2022-11-28T11:58:28,448 Created temporary directory: /tmp/pip-ephem-wheel-cache-2nmqotzj 2022-11-28T11:58:28,453 Created temporary directory: /tmp/pip-build-tracker-bdrvej54 2022-11-28T11:58:28,454 Initialized build tracking at /tmp/pip-build-tracker-bdrvej54 2022-11-28T11:58:28,454 Created build tracker: /tmp/pip-build-tracker-bdrvej54 2022-11-28T11:58:28,454 Entered build tracker: /tmp/pip-build-tracker-bdrvej54 2022-11-28T11:58:28,456 Created temporary directory: /tmp/pip-wheel-spylsw12 2022-11-28T11:58:28,463 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-28T11:58:28,468 Created temporary directory: /tmp/pip-ephem-wheel-cache-y8b8h52l 2022-11-28T11:58:28,526 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-28T11:58:28,533 2 location(s) to search for versions of pyrepseq: 2022-11-28T11:58:28,533 * https://pypi.org/simple/pyrepseq/ 2022-11-28T11:58:28,533 * https://www.piwheels.org/simple/pyrepseq/ 2022-11-28T11:58:28,535 Fetching project page and analyzing links: https://pypi.org/simple/pyrepseq/ 2022-11-28T11:58:28,536 Getting page https://pypi.org/simple/pyrepseq/ 2022-11-28T11:58:28,539 Found index url https://pypi.org/simple 2022-11-28T11:58:28,760 Fetched page https://pypi.org/simple/pyrepseq/ as application/vnd.pypi.simple.v1+json 2022-11-28T11:58:28,765 Found link https://files.pythonhosted.org/packages/2a/6e/d407f221827595d7c7c6c953fbce9cbe78539177fdafd66bd0d52e91c4ec/pyrepseq-0.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1 2022-11-28T11:58:28,766 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/5c/cd/8dba70272781c74c063534ea320b7cf0f2ff331c5cf82879e4ba5f4d486f/pyrepseq-0.1.1-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2022-11-28T11:58:28,767 Found link https://files.pythonhosted.org/packages/93/d2/f802eda9252735e6a9f7af211f04e8e80c0be5f9fc608b2cce3711706e02/pyrepseq-0.1.1.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.1 2022-11-28T11:58:28,767 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/d1/70/9e4c3a39f9b3f0bfbd18c59bd77d9238c94cb11261fbdbb586ca8cdd1fc1/pyrepseq-0.1.2-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2022-11-28T11:58:28,768 Found link https://files.pythonhosted.org/packages/6e/df/c15c0625921eba17f79e027967d3a015ec3997dc2b9f183e6630d91acab0/pyrepseq-0.1.2.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.2 2022-11-28T11:58:28,769 Skipping link: No binaries permitted for pyrepseq: https://files.pythonhosted.org/packages/33/e1/4054c735bc4aca16b9613f3544b23d867980b98c17a1f67e9fa5d1f067c4/pyrepseq-0.1.3-py3-none-any.whl (from https://pypi.org/simple/pyrepseq/) 2022-11-28T11:58:28,769 Found link https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz (from https://pypi.org/simple/pyrepseq/), version: 0.1.3 2022-11-28T11:58:28,770 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyrepseq/ 2022-11-28T11:58:28,771 Getting page https://www.piwheels.org/simple/pyrepseq/ 2022-11-28T11:58:28,773 Found index url https://www.piwheels.org/simple 2022-11-28T11:58:29,003 Fetched page https://www.piwheels.org/simple/pyrepseq/ as text/html 2022-11-28T11:58:29,007 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.2-py3-none-any.whl#sha256=11d290404e581d46bf05739028106fb7fdc5cba61c4b27e7eb7f202a84780495 (from https://www.piwheels.org/simple/pyrepseq/) 2022-11-28T11:58:29,008 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1.1-py3-none-any.whl#sha256=ba09350e430a07ba4ea87b20d55a5c22879b48bb644f2fcbacd0a8fd6fe5c37c (from https://www.piwheels.org/simple/pyrepseq/) 2022-11-28T11:58:29,008 Skipping link: No binaries permitted for pyrepseq: https://www.piwheels.org/simple/pyrepseq/pyrepseq-0.1-py3-none-any.whl#sha256=1bdb281f17e308d5eaa2580ceb8b2ec1faac7d29eda44a6727d2027b2c607e06 (from https://www.piwheels.org/simple/pyrepseq/) 2022-11-28T11:58:29,009 Skipping link: not a file: https://www.piwheels.org/simple/pyrepseq/ 2022-11-28T11:58:29,009 Skipping link: not a file: https://pypi.org/simple/pyrepseq/ 2022-11-28T11:58:29,043 Given no hashes to check 1 links for project 'pyrepseq': discarding no candidates 2022-11-28T11:58:29,077 Collecting pyrepseq==0.1.3 2022-11-28T11:58:29,082 Created temporary directory: /tmp/pip-unpack-17earboz 2022-11-28T11:58:29,319 Downloading pyrepseq-0.1.3.tar.gz (15 kB) 2022-11-28T11:58:29,416 Added pyrepseq==0.1.3 from https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz to build tracker '/tmp/pip-build-tracker-bdrvej54' 2022-11-28T11:58:29,419 Running setup.py (path:/tmp/pip-wheel-spylsw12/pyrepseq_98ed080bc35e43a7b34440aa954333dd/setup.py) egg_info for package pyrepseq 2022-11-28T11:58:29,420 Created temporary directory: /tmp/pip-pip-egg-info-8yki4n_j 2022-11-28T11:58:29,421 Preparing metadata (setup.py): started 2022-11-28T11:58:29,423 Running command python setup.py egg_info 2022-11-28T11:58:31,953 running egg_info 2022-11-28T11:58:31,958 creating /tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info 2022-11-28T11:58:32,019 writing /tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/PKG-INFO 2022-11-28T11:58:32,022 writing dependency_links to /tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/dependency_links.txt 2022-11-28T11:58:32,027 writing requirements to /tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/requires.txt 2022-11-28T11:58:32,028 writing top-level names to /tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/top_level.txt 2022-11-28T11:58:32,031 writing manifest file '/tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/SOURCES.txt' 2022-11-28T11:58:32,224 reading manifest file '/tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/SOURCES.txt' 2022-11-28T11:58:32,227 adding license file 'LICENSE' 2022-11-28T11:58:32,231 writing manifest file '/tmp/pip-pip-egg-info-8yki4n_j/pyrepseq.egg-info/SOURCES.txt' 2022-11-28T11:58:32,434 Preparing metadata (setup.py): finished with status 'done' 2022-11-28T11:58:32,447 Source in /tmp/pip-wheel-spylsw12/pyrepseq_98ed080bc35e43a7b34440aa954333dd has version 0.1.3, which satisfies requirement pyrepseq==0.1.3 from https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz 2022-11-28T11:58:32,449 Removed pyrepseq==0.1.3 from https://files.pythonhosted.org/packages/4d/81/85d54e0ce44d05782f34e5258ba3410e795fbd9643270cdb0429aa2bf696/pyrepseq-0.1.3.tar.gz from build tracker '/tmp/pip-build-tracker-bdrvej54' 2022-11-28T11:58:32,460 Created temporary directory: /tmp/pip-unpack-9akjn6uc 2022-11-28T11:58:32,461 Building wheels for collected packages: pyrepseq 2022-11-28T11:58:32,471 Created temporary directory: /tmp/pip-wheel-jgdxecba 2022-11-28T11:58:32,471 Building wheel for pyrepseq (setup.py): started 2022-11-28T11:58:32,473 Destination directory: /tmp/pip-wheel-jgdxecba 2022-11-28T11:58:32,474 Running command python setup.py bdist_wheel 2022-11-28T11:58:34,986 running bdist_wheel 2022-11-28T11:58:35,733 running build 2022-11-28T11:58:35,734 running build_py 2022-11-28T11:58:35,803 creating build 2022-11-28T11:58:35,805 creating build/lib 2022-11-28T11:58:35,806 creating build/lib/pyrepseq 2022-11-28T11:58:35,809 copying pyrepseq/__init__.py -> build/lib/pyrepseq 2022-11-28T11:58:35,814 copying pyrepseq/plotting.py -> build/lib/pyrepseq 2022-11-28T11:58:35,819 copying pyrepseq/io.py -> build/lib/pyrepseq 2022-11-28T11:58:35,824 copying pyrepseq/distance.py -> build/lib/pyrepseq 2022-11-28T11:58:35,829 copying pyrepseq/stats.py -> build/lib/pyrepseq 2022-11-28T11:58:35,833 copying pyrepseq/version.py -> build/lib/pyrepseq 2022-11-28T11:58:35,836 running egg_info 2022-11-28T11:58:35,982 writing pyrepseq.egg-info/PKG-INFO 2022-11-28T11:58:35,986 writing dependency_links to pyrepseq.egg-info/dependency_links.txt 2022-11-28T11:58:35,990 writing requirements to pyrepseq.egg-info/requires.txt 2022-11-28T11:58:35,993 writing top-level names to pyrepseq.egg-info/top_level.txt 2022-11-28T11:58:36,060 reading manifest file 'pyrepseq.egg-info/SOURCES.txt' 2022-11-28T11:58:36,065 adding license file 'LICENSE' 2022-11-28T11:58:36,070 writing manifest file 'pyrepseq.egg-info/SOURCES.txt' 2022-11-28T11:58:36,077 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyrepseq.data' as data is deprecated, please list it in `packages`. 2022-11-28T11:58:36,077 !! 2022-11-28T11:58:36,078 ############################ 2022-11-28T11:58:36,078 # Package would be ignored # 2022-11-28T11:58:36,079 ############################ 2022-11-28T11:58:36,079 Python recognizes 'pyrepseq.data' as an importable package, 2022-11-28T11:58:36,079 but it is not listed in the `packages` configuration of setuptools. 2022-11-28T11:58:36,080 'pyrepseq.data' has been automatically added to the distribution only 2022-11-28T11:58:36,080 because it may contain data files, but this behavior is likely to change 2022-11-28T11:58:36,081 in future versions of setuptools (and therefore is considered deprecated). 2022-11-28T11:58:36,081 Please make sure that 'pyrepseq.data' is included as a package by using 2022-11-28T11:58:36,082 the `packages` configuration field or the proper discovery methods 2022-11-28T11:58:36,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-28T11:58:36,082 instead of `find_packages(...)`/`find:`). 2022-11-28T11:58:36,083 You can read more about "package discovery" and "data files" on setuptools 2022-11-28T11:58:36,083 documentation page. 2022-11-28T11:58:36,084 !! 2022-11-28T11:58:36,085 check.warn(importable) 2022-11-28T11:58:36,086 creating build/lib/pyrepseq/data 2022-11-28T11:58:36,086 copying pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/lib/pyrepseq/data 2022-11-28T11:58:36,162 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-28T11:58:36,163 setuptools.SetuptoolsDeprecationWarning, 2022-11-28T11:58:36,226 installing to build/bdist.linux-armv7l/wheel 2022-11-28T11:58:36,226 running install 2022-11-28T11:58:36,289 running install_lib 2022-11-28T11:58:36,355 creating build/bdist.linux-armv7l 2022-11-28T11:58:36,355 creating build/bdist.linux-armv7l/wheel 2022-11-28T11:58:36,359 creating build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,360 copying build/lib/pyrepseq/__init__.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,365 copying build/lib/pyrepseq/plotting.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,370 copying build/lib/pyrepseq/io.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,373 copying build/lib/pyrepseq/distance.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,379 copying build/lib/pyrepseq/stats.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,383 copying build/lib/pyrepseq/version.py -> build/bdist.linux-armv7l/wheel/pyrepseq 2022-11-28T11:58:36,388 creating build/bdist.linux-armv7l/wheel/pyrepseq/data 2022-11-28T11:58:36,389 copying build/lib/pyrepseq/data/pcdelta_pbmc_minervina.csv -> build/bdist.linux-armv7l/wheel/pyrepseq/data 2022-11-28T11:58:36,392 running install_egg_info 2022-11-28T11:58:36,470 Copying pyrepseq.egg-info to build/bdist.linux-armv7l/wheel/pyrepseq-0.1.3-py3.7.egg-info 2022-11-28T11:58:36,490 running install_scripts 2022-11-28T11:58:36,692 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-11-28T11:58:36,699 creating build/bdist.linux-armv7l/wheel/pyrepseq-0.1.3.dist-info/WHEEL 2022-11-28T11:58:36,704 creating '/tmp/pip-wheel-jgdxecba/pyrepseq-0.1.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-28T11:58:36,708 adding 'pyrepseq/__init__.py' 2022-11-28T11:58:36,712 adding 'pyrepseq/distance.py' 2022-11-28T11:58:36,715 adding 'pyrepseq/io.py' 2022-11-28T11:58:36,720 adding 'pyrepseq/plotting.py' 2022-11-28T11:58:36,723 adding 'pyrepseq/stats.py' 2022-11-28T11:58:36,726 adding 'pyrepseq/version.py' 2022-11-28T11:58:36,729 adding 'pyrepseq/data/pcdelta_pbmc_minervina.csv' 2022-11-28T11:58:36,733 adding 'pyrepseq-0.1.3.dist-info/LICENSE' 2022-11-28T11:58:36,735 adding 'pyrepseq-0.1.3.dist-info/METADATA' 2022-11-28T11:58:36,737 adding 'pyrepseq-0.1.3.dist-info/WHEEL' 2022-11-28T11:58:36,738 adding 'pyrepseq-0.1.3.dist-info/top_level.txt' 2022-11-28T11:58:36,740 adding 'pyrepseq-0.1.3.dist-info/RECORD' 2022-11-28T11:58:36,742 removing build/bdist.linux-armv7l/wheel 2022-11-28T11:58:36,996 Building wheel for pyrepseq (setup.py): finished with status 'done' 2022-11-28T11:58:37,003 Created wheel for pyrepseq: filename=pyrepseq-0.1.3-py3-none-any.whl size=15888 sha256=dd8c3b5497b6b416298f499b916cb5f25a0b4a95fa8c442781fecf097b2b39d4 2022-11-28T11:58:37,005 Stored in directory: /tmp/pip-ephem-wheel-cache-y8b8h52l/wheels/3d/cd/eb/8813fea27c93a495aa4151b14e05f45b947e0060a45ff079b9 2022-11-28T11:58:37,031 Successfully built pyrepseq 2022-11-28T11:58:37,039 Removed build tracker: '/tmp/pip-build-tracker-bdrvej54'