2022-11-30T22:57:36,691 Created temporary directory: /tmp/pip-ephem-wheel-cache-n4s0_qps 2022-11-30T22:57:36,696 Created temporary directory: /tmp/pip-build-tracker-pqvs7ue0 2022-11-30T22:57:36,697 Initialized build tracking at /tmp/pip-build-tracker-pqvs7ue0 2022-11-30T22:57:36,697 Created build tracker: /tmp/pip-build-tracker-pqvs7ue0 2022-11-30T22:57:36,697 Entered build tracker: /tmp/pip-build-tracker-pqvs7ue0 2022-11-30T22:57:36,699 Created temporary directory: /tmp/pip-wheel-zq7its9w 2022-11-30T22:57:36,707 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-11-30T22:57:36,712 Created temporary directory: /tmp/pip-ephem-wheel-cache-hx4si3e3 2022-11-30T22:57:36,763 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-11-30T22:57:36,770 2 location(s) to search for versions of sigprofilerassignment: 2022-11-30T22:57:36,770 * https://pypi.org/simple/sigprofilerassignment/ 2022-11-30T22:57:36,770 * https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-30T22:57:36,771 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2022-11-30T22:57:36,772 Getting page https://pypi.org/simple/sigprofilerassignment/ 2022-11-30T22:57:36,776 Found index url https://pypi.org/simple 2022-11-30T22:57:37,019 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2022-11-30T22:57:37,038 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,039 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2022-11-30T22:57:37,040 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,041 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2022-11-30T22:57:37,041 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,042 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2022-11-30T22:57:37,043 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,043 Found link 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https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,046 Found link https://files.pythonhosted.org/packages/50/e5/0606e29d66a591712f8e43b9d2550f9d3c8a7c23b2720149f80424219418/SigProfilerAssignment-0.0.7.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.7 2022-11-30T22:57:37,047 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/b5/e6/bf7281f0f954a6108054031ca43038d77c11074c97615710dfe0d6153edb/SigProfilerAssignment-0.0.8-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,047 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2022-11-30T22:57:37,048 Skipping link: No binaries permitted for sigprofilerassignment: 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2022-11-30T22:57:37,050 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/98/65/b438b8c59fd28a2b6fe3a8650439d5e4dd12c376f0edddf22f20552920e5/SigProfilerAssignment-0.0.11-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,051 Found link https://files.pythonhosted.org/packages/ad/66/15131e6cc8d00269785242b03348f6b514425db74595f95906dad17abd9c/SigProfilerAssignment-0.0.11.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.11 2022-11-30T22:57:37,052 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,052 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,055 Found link https://files.pythonhosted.org/packages/7d/14/76a03a916457f58fc7af023152a5ebab12e9c5c196e7a431a8dff5fd5713/SigProfilerAssignment-0.0.14.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.14 2022-11-30T22:57:37,056 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/58/11/55f11d7b91ceed9ef2f195917f4d6523936f2cc801b9acc87022e1c53a3c/SigProfilerAssignment-0.0.15-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,056 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2022-11-30T22:57:37,057 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d8/27/852104d5cca8ece5586c5bbccd402376b51d1255460eb67540ae51a234d0/SigProfilerAssignment-0.0.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,058 Found link https://files.pythonhosted.org/packages/09/cf/960349c3a4e334416759693bdf0fbe9e03671da4866c0cb51cd83e70e887/SigProfilerAssignment-0.0.16.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.16 2022-11-30T22:57:37,058 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/a5/03/4c78706258493def8af88439f110859e6cdc31a35c004ac3dcc993bb812d/SigProfilerAssignment-0.0.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,059 Found link https://files.pythonhosted.org/packages/01/95/3c7b1893786851e46e67efd092c7f6312c935cfae567f3c326e7408821c9/SigProfilerAssignment-0.0.17.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.17 2022-11-30T22:57:37,059 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/73/c586f0e9b2bb41a67c64605f214499ca755929f4bf4092d11a28cd2982b7/SigProfilerAssignment-0.0.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,060 Found link https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.18 2022-11-30T22:57:37,061 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,061 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2022-11-30T22:57:37,062 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,063 Found link https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.20 2022-11-30T22:57:37,064 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-30T22:57:37,064 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-30T22:57:37,067 Found index url https://www.piwheels.org/simple 2022-11-30T22:57:37,328 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2022-11-30T22:57:37,344 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.19-py3-none-any.whl#sha256=03f4c6dbbfcf41dced93e810201677be4061018a225f413d6bdd1cfc36ceca4a (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,344 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.18-py3-none-any.whl#sha256=e418f8786c23f1cdb13f1eec87b2a79361574a9d43b6cb1860c3faa2e51655f7 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,345 Skipping link: No binaries permitted for sigprofilerassignment: 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,352 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,353 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,353 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-11-30T22:57:37,354 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-11-30T22:57:37,355 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2022-11-30T22:57:37,398 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2022-11-30T22:57:37,428 Collecting sigprofilerassignment==0.0.20 2022-11-30T22:57:37,432 Created temporary directory: /tmp/pip-unpack-1wwn3ta4 2022-11-30T22:57:38,684 Downloading SigProfilerAssignment-0.0.20.tar.gz (4.6 MB) 2022-11-30T22:57:41,666 Added sigprofilerassignment==0.0.20 from https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz to build tracker '/tmp/pip-build-tracker-pqvs7ue0' 2022-11-30T22:57:41,669 Running setup.py (path:/tmp/pip-wheel-zq7its9w/sigprofilerassignment_d7f2d3f742e0450fa7f08c538a393477/setup.py) egg_info for package sigprofilerassignment 2022-11-30T22:57:41,670 Created temporary directory: /tmp/pip-pip-egg-info-0mh4m7bu 2022-11-30T22:57:41,671 Preparing metadata (setup.py): started 2022-11-30T22:57:41,673 Running command python setup.py egg_info 2022-11-30T22:57:44,192 running egg_info 2022-11-30T22:57:44,197 creating /tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info 2022-11-30T22:57:44,257 writing /tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/PKG-INFO 2022-11-30T22:57:44,263 writing dependency_links to /tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-30T22:57:44,268 writing requirements to /tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/requires.txt 2022-11-30T22:57:44,270 writing top-level names to /tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/top_level.txt 2022-11-30T22:57:44,272 writing manifest file '/tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-30T22:57:44,467 reading manifest file '/tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-30T22:57:44,470 reading manifest template 'MANIFEST.in' 2022-11-30T22:57:44,502 adding license file 'LICENSE.txt' 2022-11-30T22:57:44,521 writing manifest file '/tmp/pip-pip-egg-info-0mh4m7bu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-30T22:57:44,726 Preparing metadata (setup.py): finished with status 'done' 2022-11-30T22:57:44,740 Source in /tmp/pip-wheel-zq7its9w/sigprofilerassignment_d7f2d3f742e0450fa7f08c538a393477 has version 0.0.20, which satisfies requirement sigprofilerassignment==0.0.20 from https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz 2022-11-30T22:57:44,742 Removed sigprofilerassignment==0.0.20 from https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz from build tracker '/tmp/pip-build-tracker-pqvs7ue0' 2022-11-30T22:57:44,754 Created temporary directory: /tmp/pip-unpack-c5qii3za 2022-11-30T22:57:44,756 Building wheels for collected packages: sigprofilerassignment 2022-11-30T22:57:44,764 Created temporary directory: /tmp/pip-wheel-suiqji98 2022-11-30T22:57:44,765 Building wheel for sigprofilerassignment (setup.py): started 2022-11-30T22:57:44,767 Destination directory: /tmp/pip-wheel-suiqji98 2022-11-30T22:57:44,767 Running command python setup.py bdist_wheel 2022-11-30T22:57:47,332 running bdist_wheel 2022-11-30T22:57:48,062 running build 2022-11-30T22:57:48,062 running build_py 2022-11-30T22:57:48,130 creating build 2022-11-30T22:57:48,130 creating build/lib 2022-11-30T22:57:48,132 creating build/lib/SigProfilerAssignment 2022-11-30T22:57:48,133 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,137 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,143 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,146 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,153 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,156 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2022-11-30T22:57:48,161 running egg_info 2022-11-30T22:57:48,359 writing SigProfilerAssignment.egg-info/PKG-INFO 2022-11-30T22:57:48,364 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2022-11-30T22:57:48,368 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2022-11-30T22:57:48,370 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2022-11-30T22:57:48,447 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-30T22:57:48,461 reading manifest template 'MANIFEST.in' 2022-11-30T22:57:48,485 adding license file 'LICENSE.txt' 2022-11-30T22:57:48,511 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-11-30T22:57:48,518 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,518 !! 2022-11-30T22:57:48,519 ############################ 2022-11-30T22:57:48,519 # Package would be ignored # 2022-11-30T22:57:48,520 ############################ 2022-11-30T22:57:48,520 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2022-11-30T22:57:48,520 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,521 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2022-11-30T22:57:48,521 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,522 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,522 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2022-11-30T22:57:48,523 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,523 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,523 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,524 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,524 documentation page. 2022-11-30T22:57:48,525 !! 2022-11-30T22:57:48,526 check.warn(importable) 2022-11-30T22:57:48,526 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,527 !! 2022-11-30T22:57:48,528 ############################ 2022-11-30T22:57:48,528 # Package would be ignored # 2022-11-30T22:57:48,528 ############################ 2022-11-30T22:57:48,529 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package, 2022-11-30T22:57:48,529 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,529 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' has been automatically added to the distribution only 2022-11-30T22:57:48,530 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,530 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,531 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is included as a package by using 2022-11-30T22:57:48,531 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,531 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,532 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,532 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,533 documentation page. 2022-11-30T22:57:48,533 !! 2022-11-30T22:57:48,534 check.warn(importable) 2022-11-30T22:57:48,534 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,535 !! 2022-11-30T22:57:48,536 ############################ 2022-11-30T22:57:48,536 # Package would be ignored # 2022-11-30T22:57:48,536 ############################ 2022-11-30T22:57:48,536 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package, 2022-11-30T22:57:48,537 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,537 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' has been automatically added to the distribution only 2022-11-30T22:57:48,538 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,538 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,539 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is included as a package by using 2022-11-30T22:57:48,539 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,539 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,540 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,540 documentation page. 2022-11-30T22:57:48,541 !! 2022-11-30T22:57:48,542 check.warn(importable) 2022-11-30T22:57:48,542 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,543 !! 2022-11-30T22:57:48,544 ############################ 2022-11-30T22:57:48,544 # Package would be ignored # 2022-11-30T22:57:48,544 ############################ 2022-11-30T22:57:48,544 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2022-11-30T22:57:48,545 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,545 'SigProfilerAssignment.data' has been automatically added to the distribution only 2022-11-30T22:57:48,546 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,546 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,547 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2022-11-30T22:57:48,547 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,547 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,548 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,548 documentation page. 2022-11-30T22:57:48,549 !! 2022-11-30T22:57:48,550 check.warn(importable) 2022-11-30T22:57:48,550 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,550 !! 2022-11-30T22:57:48,551 ############################ 2022-11-30T22:57:48,552 # Package would be ignored # 2022-11-30T22:57:48,552 ############################ 2022-11-30T22:57:48,552 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2022-11-30T22:57:48,553 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,553 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2022-11-30T22:57:48,554 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,554 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,554 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2022-11-30T22:57:48,555 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,555 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,555 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,556 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,556 documentation page. 2022-11-30T22:57:48,557 !! 2022-11-30T22:57:48,558 check.warn(importable) 2022-11-30T22:57:48,558 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,559 !! 2022-11-30T22:57:48,559 ############################ 2022-11-30T22:57:48,560 # Package would be ignored # 2022-11-30T22:57:48,560 ############################ 2022-11-30T22:57:48,560 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2022-11-30T22:57:48,561 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,561 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2022-11-30T22:57:48,561 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,562 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,562 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2022-11-30T22:57:48,563 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,563 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,563 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,564 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,564 documentation page. 2022-11-30T22:57:48,565 !! 2022-11-30T22:57:48,566 check.warn(importable) 2022-11-30T22:57:48,566 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,566 !! 2022-11-30T22:57:48,567 ############################ 2022-11-30T22:57:48,567 # Package would be ignored # 2022-11-30T22:57:48,568 ############################ 2022-11-30T22:57:48,568 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2022-11-30T22:57:48,568 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,569 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2022-11-30T22:57:48,569 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,569 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,570 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2022-11-30T22:57:48,570 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,571 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,571 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,571 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,572 documentation page. 2022-11-30T22:57:48,573 !! 2022-11-30T22:57:48,573 check.warn(importable) 2022-11-30T22:57:48,574 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,574 !! 2022-11-30T22:57:48,575 ############################ 2022-11-30T22:57:48,575 # Package would be ignored # 2022-11-30T22:57:48,575 ############################ 2022-11-30T22:57:48,576 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2022-11-30T22:57:48,576 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,576 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2022-11-30T22:57:48,577 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,577 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,578 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2022-11-30T22:57:48,578 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,579 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,579 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,579 documentation page. 2022-11-30T22:57:48,580 !! 2022-11-30T22:57:48,581 check.warn(importable) 2022-11-30T22:57:48,581 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,582 !! 2022-11-30T22:57:48,583 ############################ 2022-11-30T22:57:48,583 # Package would be ignored # 2022-11-30T22:57:48,583 ############################ 2022-11-30T22:57:48,584 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2022-11-30T22:57:48,584 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,585 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2022-11-30T22:57:48,585 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,585 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,586 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2022-11-30T22:57:48,586 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,587 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,588 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,588 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,589 documentation page. 2022-11-30T22:57:48,590 !! 2022-11-30T22:57:48,590 check.warn(importable) 2022-11-30T22:57:48,591 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,591 !! 2022-11-30T22:57:48,593 ############################ 2022-11-30T22:57:48,593 # Package would be ignored # 2022-11-30T22:57:48,594 ############################ 2022-11-30T22:57:48,594 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2022-11-30T22:57:48,594 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,595 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2022-11-30T22:57:48,595 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,596 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,596 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2022-11-30T22:57:48,597 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,597 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,598 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,598 documentation page. 2022-11-30T22:57:48,599 !! 2022-11-30T22:57:48,600 check.warn(importable) 2022-11-30T22:57:48,600 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,601 !! 2022-11-30T22:57:48,601 ############################ 2022-11-30T22:57:48,602 # Package would be ignored # 2022-11-30T22:57:48,602 ############################ 2022-11-30T22:57:48,603 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2022-11-30T22:57:48,603 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,604 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2022-11-30T22:57:48,604 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,605 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,605 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2022-11-30T22:57:48,606 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,606 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,606 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,608 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,608 documentation page. 2022-11-30T22:57:48,609 !! 2022-11-30T22:57:48,610 check.warn(importable) 2022-11-30T22:57:48,610 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2022-11-30T22:57:48,611 !! 2022-11-30T22:57:48,613 ############################ 2022-11-30T22:57:48,613 # Package would be ignored # 2022-11-30T22:57:48,613 ############################ 2022-11-30T22:57:48,614 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2022-11-30T22:57:48,614 but it is not listed in the `packages` configuration of setuptools. 2022-11-30T22:57:48,615 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2022-11-30T22:57:48,615 because it may contain data files, but this behavior is likely to change 2022-11-30T22:57:48,615 in future versions of setuptools (and therefore is considered deprecated). 2022-11-30T22:57:48,617 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2022-11-30T22:57:48,617 the `packages` configuration field or the proper discovery methods 2022-11-30T22:57:48,618 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-11-30T22:57:48,618 instead of `find_packages(...)`/`find:`). 2022-11-30T22:57:48,619 You can read more about "package discovery" and "data files" on setuptools 2022-11-30T22:57:48,619 documentation page. 2022-11-30T22:57:48,620 !! 2022-11-30T22:57:48,621 check.warn(importable) 2022-11-30T22:57:48,621 creating build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,621 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,622 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,622 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,622 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,622 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,623 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,623 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,624 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:48,635 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:48,636 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:48,641 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:48,645 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-11-30T22:57:48,646 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-11-30T22:57:48,679 creating build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,681 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,685 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,688 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,693 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,696 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,707 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,731 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,735 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,739 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,743 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,748 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2022-11-30T22:57:48,755 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2022-11-30T22:57:48,756 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,758 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,763 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,770 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,775 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,783 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,788 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,794 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,799 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,811 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,822 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,828 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,833 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,839 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,849 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,861 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,872 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,877 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,883 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,888 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,894 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,905 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,917 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,922 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,928 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,933 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,944 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:48,955 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,956 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,963 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,970 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,977 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,984 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,989 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:48,994 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,006 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,018 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,023 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,028 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,040 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,052 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,057 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,062 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,077 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,091 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,096 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,102 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,113 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:49,124 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,126 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,133 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,140 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,147 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,154 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,159 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,165 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,176 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,188 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,193 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,198 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,211 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,233 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,238 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,243 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,254 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,266 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,271 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,276 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,287 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:49,299 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,301 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,307 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,315 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,324 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,333 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,339 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,344 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,359 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,371 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,377 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,382 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,394 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,406 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,412 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,418 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,430 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,442 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,446 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,452 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,462 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:49,473 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,474 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,481 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,488 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,496 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,503 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,508 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,514 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,526 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,537 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,542 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,548 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,560 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,571 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,577 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,582 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,594 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,606 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,611 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,617 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,628 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:49,640 creating build/lib/SigProfilerAssignment/data/tests 2022-11-30T22:57:49,641 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-30T22:57:49,643 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-11-30T22:57:49,667 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:49,668 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:49,673 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:49,677 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,678 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,685 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,699 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,710 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,725 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:49,807 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-11-30T22:57:49,807 setuptools.SetuptoolsDeprecationWarning, 2022-11-30T22:57:49,869 installing to build/bdist.linux-armv7l/wheel 2022-11-30T22:57:49,870 running install 2022-11-30T22:57:49,931 running install_lib 2022-11-30T22:57:49,997 creating build/bdist.linux-armv7l 2022-11-30T22:57:49,998 creating build/bdist.linux-armv7l/wheel 2022-11-30T22:57:50,002 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,005 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,009 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,016 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,020 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,027 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,033 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,035 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,042 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,047 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,052 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,057 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,070 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,076 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,082 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:50,085 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-11-30T22:57:50,087 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-11-30T22:57:50,126 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:50,131 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-11-30T22:57:50,135 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-11-30T22:57:50,140 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-11-30T22:57:50,147 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,149 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,152 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,155 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,158 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,163 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,166 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,189 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,200 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,203 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:50,209 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2022-11-30T22:57:50,212 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,213 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,219 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,226 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,241 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,255 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,259 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,271 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,282 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,287 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,293 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,298 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,303 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,312 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,327 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,333 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,339 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,352 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,363 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,368 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,372 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-11-30T22:57:50,385 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,387 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,399 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,410 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,414 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,425 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,431 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,442 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,449 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,453 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,458 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,465 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,476 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,481 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,485 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,496 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,501 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,506 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,512 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,517 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,530 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-11-30T22:57:50,543 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,544 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,549 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,555 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,568 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,573 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,586 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,591 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,597 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,609 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,619 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,631 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,636 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,640 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,647 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,652 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,662 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,667 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,678 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,688 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,694 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-11-30T22:57:50,702 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,703 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,715 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,719 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,725 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,729 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,739 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,746 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,751 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,763 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,775 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,785 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,796 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,801 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,806 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,810 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,822 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,827 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,833 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,837 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,843 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,849 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,859 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,864 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,869 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,881 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-11-30T22:57:50,893 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,895 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,901 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,913 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,917 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,929 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,939 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,944 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,948 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,954 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,960 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,965 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,969 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,975 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,985 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:50,990 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,000 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,004 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,015 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,029 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,035 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-11-30T22:57:51,049 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2022-11-30T22:57:51,052 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,055 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,062 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,081 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,094 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,105 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-11-30T22:57:51,117 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-30T22:57:51,118 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-11-30T22:57:51,142 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:51,143 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:51,147 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-11-30T22:57:51,150 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:51,162 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-11-30T22:57:51,166 running install_egg_info 2022-11-30T22:57:51,238 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.20-py3.7.egg-info 2022-11-30T22:57:51,263 running install_scripts 2022-11-30T22:57:51,454 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-11-30T22:57:51,462 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.20.dist-info/WHEEL 2022-11-30T22:57:51,466 creating '/tmp/pip-wheel-suiqji98/SigProfilerAssignment-0.0.20-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-11-30T22:57:51,472 adding 'SigProfilerAssignment/Analyzer.py' 2022-11-30T22:57:51,474 adding 'SigProfilerAssignment/__init__.py' 2022-11-30T22:57:51,487 adding 'SigProfilerAssignment/decompose_subroutines.py' 2022-11-30T22:57:51,496 adding 'SigProfilerAssignment/decomposition.py' 2022-11-30T22:57:51,505 adding 'SigProfilerAssignment/single_sample.py' 2022-11-30T22:57:51,508 adding 'SigProfilerAssignment/version.py' 2022-11-30T22:57:51,515 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2022-11-30T22:57:51,519 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2022-11-30T22:57:51,524 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2022-11-30T22:57:51,528 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2022-11-30T22:57:51,532 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2022-11-30T22:57:51,537 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2022-11-30T22:57:51,541 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2022-11-30T22:57:51,566 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2022-11-30T22:57:51,576 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2022-11-30T22:57:51,578 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2022-11-30T22:57:51,852 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2022-11-30T22:57:51,871 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2022-11-30T22:57:51,874 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2022-11-30T22:57:51,881 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2022-11-30T22:57:51,884 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2022-11-30T22:57:51,919 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2022-11-30T22:57:52,026 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2022-11-30T22:57:52,038 adding 'SigProfilerAssignment/data/Samples.txt' 2022-11-30T22:57:52,041 adding 'SigProfilerAssignment/data/csvexample.csv' 2022-11-30T22:57:52,046 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2022-11-30T22:57:52,054 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2022-11-30T22:57:52,087 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2022-11-30T22:57:52,099 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2022-11-30T22:57:52,120 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2022-11-30T22:57:52,141 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2022-11-30T22:57:52,171 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2022-11-30T22:57:52,180 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2022-11-30T22:57:52,187 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2022-11-30T22:57:52,201 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2022-11-30T22:57:52,286 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2022-11-30T22:57:52,375 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2022-11-30T22:57:52,385 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2022-11-30T22:57:52,393 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2022-11-30T22:57:52,407 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2022-11-30T22:57:52,461 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2022-11-30T22:57:52,554 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2022-11-30T22:57:52,650 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2022-11-30T22:57:52,663 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2022-11-30T22:57:52,671 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2022-11-30T22:57:52,678 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2022-11-30T22:57:52,692 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2022-11-30T22:57:52,796 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2022-11-30T22:57:52,900 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2022-11-30T22:57:52,910 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2022-11-30T22:57:52,918 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2022-11-30T22:57:52,932 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2022-11-30T22:57:53,010 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2022-11-30T22:57:53,091 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2022-11-30T22:57:53,116 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2022-11-30T22:57:53,137 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2022-11-30T22:57:53,168 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2022-11-30T22:57:53,199 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2022-11-30T22:57:53,209 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2022-11-30T22:57:53,216 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2022-11-30T22:57:53,302 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2022-11-30T22:57:53,391 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2022-11-30T22:57:53,401 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2022-11-30T22:57:53,409 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2022-11-30T22:57:53,502 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2022-11-30T22:57:53,597 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2022-11-30T22:57:53,608 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2022-11-30T22:57:53,616 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2022-11-30T22:57:53,710 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2022-11-30T22:57:53,808 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2022-11-30T22:57:53,819 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2022-11-30T22:57:53,827 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2022-11-30T22:57:53,906 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2022-11-30T22:57:53,988 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2022-11-30T22:57:54,012 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2022-11-30T22:57:54,034 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2022-11-30T22:57:54,064 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2022-11-30T22:57:54,095 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2022-11-30T22:57:54,104 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2022-11-30T22:57:54,112 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2022-11-30T22:57:54,197 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2022-11-30T22:57:54,286 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2022-11-30T22:57:54,296 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2022-11-30T22:57:54,304 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2022-11-30T22:57:54,397 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2022-11-30T22:57:54,494 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2022-11-30T22:57:54,504 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2022-11-30T22:57:54,512 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2022-11-30T22:57:54,607 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2022-11-30T22:57:54,704 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2022-11-30T22:57:54,715 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2022-11-30T22:57:54,723 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2022-11-30T22:57:54,802 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2022-11-30T22:57:54,884 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2022-11-30T22:57:54,908 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2022-11-30T22:57:54,930 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2022-11-30T22:57:54,960 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2022-11-30T22:57:54,991 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2022-11-30T22:57:55,000 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2022-11-30T22:57:55,008 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2022-11-30T22:57:55,093 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2022-11-30T22:57:55,181 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2022-11-30T22:57:55,191 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2022-11-30T22:57:55,199 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2022-11-30T22:57:55,292 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2022-11-30T22:57:55,388 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2022-11-30T22:57:55,398 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2022-11-30T22:57:55,406 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2022-11-30T22:57:55,501 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2022-11-30T22:57:55,598 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2022-11-30T22:57:55,609 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2022-11-30T22:57:55,617 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2022-11-30T22:57:55,696 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2022-11-30T22:57:55,777 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2022-11-30T22:57:55,802 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2022-11-30T22:57:55,823 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2022-11-30T22:57:55,854 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2022-11-30T22:57:55,885 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2022-11-30T22:57:55,893 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2022-11-30T22:57:55,901 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2022-11-30T22:57:55,986 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2022-11-30T22:57:56,074 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2022-11-30T22:57:56,084 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2022-11-30T22:57:56,092 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2022-11-30T22:57:56,185 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2022-11-30T22:57:56,280 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2022-11-30T22:57:56,291 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2022-11-30T22:57:56,299 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2022-11-30T22:57:56,394 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2022-11-30T22:57:56,491 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2022-11-30T22:57:56,502 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2022-11-30T22:57:56,510 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2022-11-30T22:57:56,589 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2022-11-30T22:57:56,670 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2022-11-30T22:57:56,837 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2022-11-30T22:57:56,850 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2022-11-30T22:57:56,853 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix.txt' 2022-11-30T22:57:56,868 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2022-11-30T22:57:56,918 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2022-11-30T22:57:56,966 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2022-11-30T22:57:57,050 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2022-11-30T22:57:57,103 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2022-11-30T22:57:57,111 adding 'SigProfilerAssignment-0.0.20.dist-info/LICENSE.txt' 2022-11-30T22:57:57,115 adding 'SigProfilerAssignment-0.0.20.dist-info/METADATA' 2022-11-30T22:57:57,117 adding 'SigProfilerAssignment-0.0.20.dist-info/WHEEL' 2022-11-30T22:57:57,118 adding 'SigProfilerAssignment-0.0.20.dist-info/top_level.txt' 2022-11-30T22:57:57,125 adding 'SigProfilerAssignment-0.0.20.dist-info/RECORD' 2022-11-30T22:57:57,285 removing build/bdist.linux-armv7l/wheel 2022-11-30T22:57:57,613 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2022-11-30T22:57:57,757 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.20-py3-none-any.whl size=4668146 sha256=524165a6042673bc7cd68c552f4926d548bd94722fe54ec33365d12eb46d584f 2022-11-30T22:57:57,760 Stored in directory: /tmp/pip-ephem-wheel-cache-hx4si3e3/wheels/1f/16/8c/ea839e1df697373078a6381af2583bfe49230684db1badcaab 2022-11-30T22:57:57,805 Successfully built sigprofilerassignment 2022-11-30T22:57:58,166 Removed build tracker: '/tmp/pip-build-tracker-pqvs7ue0'