2022-12-01T00:33:23,154 Created temporary directory: /tmp/pip-ephem-wheel-cache-o9m0ulp_ 2022-12-01T00:33:23,156 Created temporary directory: /tmp/pip-build-tracker-2ijfc9kl 2022-12-01T00:33:23,156 Initialized build tracking at /tmp/pip-build-tracker-2ijfc9kl 2022-12-01T00:33:23,156 Created build tracker: /tmp/pip-build-tracker-2ijfc9kl 2022-12-01T00:33:23,156 Entered build tracker: /tmp/pip-build-tracker-2ijfc9kl 2022-12-01T00:33:23,157 Created temporary directory: /tmp/pip-wheel-o4hjxi9_ 2022-12-01T00:33:23,160 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,279 Found link https://files.pythonhosted.org/packages/3d/c6/c039d2c2749bf2f45a0e15c5c7446c84077210527270a35612d20c86c063/biolink-model-3.1.1.tar.gz (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 3.1.1 2022-12-01T00:33:23,279 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/bf/4c/96cdc2767dbbe7880c2bcad50acab54d9672e1d9a05f9ca81fe7d76fcae8/biolink_model-3.1.1-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,280 Fetching project page and analyzing links: https://www.piwheels.org/simple/biolink-model/ 2022-12-01T00:33:23,280 Getting page https://www.piwheels.org/simple/biolink-model/ 2022-12-01T00:33:23,281 Found index url https://www.piwheels.org/simple 2022-12-01T00:33:23,563 Fetched page https://www.piwheels.org/simple/biolink-model/ as text/html 2022-12-01T00:33:23,565 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.5-py3-none-any.whl#sha256=d4fb26095d715bd9abea9e36b3a3c14299c2de72b3c2333e8dc4b91248af2fb7 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,565 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.4-py3-none-any.whl#sha256=903f752ed3430dbab76022e2c69176550e267eb9c55ac4cb39b98d9b270609d0 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,565 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.3-py3-none-any.whl#sha256=882f1d08c2a5605c40c0ae3368dcc1acbf5349c9f9aff243c999f6fa575a1e52 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,566 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.2-py3-none-any.whl#sha256=460f615978ea5b78c1736ba23bc4c05f92a8125034eed571f83a57f1fc06f8fd (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2022-12-01T00:33:23,566 Skipping link: not a file: https://www.piwheels.org/simple/biolink-model/ 2022-12-01T00:33:23,566 Skipping link: not a file: https://pypi.org/simple/biolink-model/ 2022-12-01T00:33:23,587 Given no hashes to check 1 links for project 'biolink-model': discarding no candidates 2022-12-01T00:33:23,604 Collecting biolink-model==3.1.1 2022-12-01T00:33:23,606 Created temporary directory: /tmp/pip-unpack-57ms8qw1 2022-12-01T00:33:23,658 Downloading biolink-model-3.1.1.tar.gz (110 kB) 2022-12-01T00:33:23,767 Added biolink-model==3.1.1 from https://files.pythonhosted.org/packages/3d/c6/c039d2c2749bf2f45a0e15c5c7446c84077210527270a35612d20c86c063/biolink-model-3.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-2ijfc9kl' 2022-12-01T00:33:23,769 Running setup.py (path:/tmp/pip-wheel-o4hjxi9_/biolink-model_5917ce6e8fbd4de0be5f1281eae74e2e/setup.py) egg_info for package biolink-model 2022-12-01T00:33:23,770 Created temporary directory: /tmp/pip-pip-egg-info-q_ukpb99 2022-12-01T00:33:23,770 Preparing metadata (setup.py): started 2022-12-01T00:33:23,771 Running command python setup.py egg_info 2022-12-01T00:33:24,630 Traceback (most recent call last): 2022-12-01T00:33:24,631 File "", line 2, in 2022-12-01T00:33:24,631 File "", line 34, in 2022-12-01T00:33:24,631 File "/tmp/pip-wheel-o4hjxi9_/biolink-model_5917ce6e8fbd4de0be5f1281eae74e2e/setup.py", line 5, in 2022-12-01T00:33:24,631 with open("requirements.txt", "r") as FH: 2022-12-01T00:33:24,631 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2022-12-01T00:33:24,712 ERROR: [present-rich] python setup.py egg_info exited with 1 2022-12-01T00:33:24,730 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2022-12-01T00:33:24,730 exec(compile('"'"''"'"''"'"' 2022-12-01T00:33:24,730 # This is -- a caller that pip uses to run setup.py 2022-12-01T00:33:24,730 # 2022-12-01T00:33:24,730 # - It imports setuptools before invoking setup.py, to enable projects that directly 2022-12-01T00:33:24,730 # import from `distutils.core` to work with newer packaging standards. 2022-12-01T00:33:24,730 # - It provides a clear error message when setuptools is not installed. 2022-12-01T00:33:24,730 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2022-12-01T00:33:24,730 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2022-12-01T00:33:24,730 # manifest_maker: standard file '"'"'-c'"'"' not found". 2022-12-01T00:33:24,730 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2022-12-01T00:33:24,730 import os, sys, tokenize 2022-12-01T00:33:24,730 2022-12-01T00:33:24,730 try: 2022-12-01T00:33:24,730 import setuptools 2022-12-01T00:33:24,730 except ImportError as error: 2022-12-01T00:33:24,730 print( 2022-12-01T00:33:24,730 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2022-12-01T00:33:24,730 "the build environment.", 2022-12-01T00:33:24,730 file=sys.stderr, 2022-12-01T00:33:24,730 ) 2022-12-01T00:33:24,730 sys.exit(1) 2022-12-01T00:33:24,730 2022-12-01T00:33:24,730 __file__ = %r 2022-12-01T00:33:24,730 sys.argv[0] = __file__ 2022-12-01T00:33:24,730 2022-12-01T00:33:24,730 if os.path.exists(__file__): 2022-12-01T00:33:24,730 filename = __file__ 2022-12-01T00:33:24,730 with tokenize.open(__file__) as f: 2022-12-01T00:33:24,730 setup_py_code = f.read() 2022-12-01T00:33:24,730 else: 2022-12-01T00:33:24,730 filename = "" 2022-12-01T00:33:24,730 setup_py_code = "from setuptools import setup; setup()" 2022-12-01T00:33:24,730 2022-12-01T00:33:24,730 exec(compile(setup_py_code, filename, "exec")) 2022-12-01T00:33:24,730 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-o4hjxi9_/biolink-model_5917ce6e8fbd4de0be5f1281eae74e2e/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-q_ukpb99[/] 2022-12-01T00:33:24,730 [bold magenta]cwd[/]: /tmp/pip-wheel-o4hjxi9_/biolink-model_5917ce6e8fbd4de0be5f1281eae74e2e/ 2022-12-01T00:33:24,731 Preparing metadata (setup.py): finished with status 'error' 2022-12-01T00:33:24,732 ERROR: [present-rich] metadata generation failed 2022-12-01T00:33:24,738 Exception information: 2022-12-01T00:33:24,738 Traceback (most recent call last): 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2022-12-01T00:33:24,738 call_subprocess( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2022-12-01T00:33:24,738 raise error 2022-12-01T00:33:24,738 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2022-12-01T00:33:24,738 2022-12-01T00:33:24,738 The above exception was the direct cause of the following exception: 2022-12-01T00:33:24,738 2022-12-01T00:33:24,738 Traceback (most recent call last): 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-01T00:33:24,738 status = run_func(*args) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-01T00:33:24,738 return func(self, options, args) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2022-12-01T00:33:24,738 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2022-12-01T00:33:24,738 result = self._result = resolver.resolve( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2022-12-01T00:33:24,738 state = resolution.resolve(requirements, max_rounds=max_rounds) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2022-12-01T00:33:24,738 self._add_to_criteria(self.state.criteria, r, parent=None) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2022-12-01T00:33:24,738 if not criterion.candidates: 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2022-12-01T00:33:24,738 return bool(self._sequence) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2022-12-01T00:33:24,738 return any(self) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2022-12-01T00:33:24,738 return (c for c in iterator if id(c) not in self._incompatible_ids) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2022-12-01T00:33:24,738 candidate = func() 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2022-12-01T00:33:24,738 self._link_candidate_cache[link] = LinkCandidate( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__ 2022-12-01T00:33:24,738 super().__init__( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2022-12-01T00:33:24,738 self.dist = self._prepare() 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2022-12-01T00:33:24,738 dist = self._prepare_distribution() 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2022-12-01T00:33:24,738 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2022-12-01T00:33:24,738 return self._prepare_linked_requirement(req, parallel_builds) 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement 2022-12-01T00:33:24,738 dist = _get_prepared_distribution( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2022-12-01T00:33:24,738 abstract_dist.prepare_distribution_metadata( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2022-12-01T00:33:24,738 self.req.prepare_metadata() 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 541, in prepare_metadata 2022-12-01T00:33:24,738 self.metadata_directory = generate_metadata_legacy( 2022-12-01T00:33:24,738 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2022-12-01T00:33:24,738 raise MetadataGenerationFailed(package_details=details) from error 2022-12-01T00:33:24,738 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2022-12-01T00:33:24,749 Removed biolink-model==3.1.1 from https://files.pythonhosted.org/packages/3d/c6/c039d2c2749bf2f45a0e15c5c7446c84077210527270a35612d20c86c063/biolink-model-3.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-2ijfc9kl' 2022-12-01T00:33:24,749 Removed build tracker: '/tmp/pip-build-tracker-2ijfc9kl'