2022-12-01T18:32:15,888 Created temporary directory: /tmp/pip-ephem-wheel-cache-w_cv9pb3 2022-12-01T18:32:15,892 Created temporary directory: /tmp/pip-build-tracker-visfohdc 2022-12-01T18:32:15,893 Initialized build tracking at /tmp/pip-build-tracker-visfohdc 2022-12-01T18:32:15,893 Created build tracker: /tmp/pip-build-tracker-visfohdc 2022-12-01T18:32:15,894 Entered build tracker: /tmp/pip-build-tracker-visfohdc 2022-12-01T18:32:15,895 Created temporary directory: /tmp/pip-wheel-6p3ajfam 2022-12-01T18:32:15,903 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-01T18:32:15,908 Created temporary directory: /tmp/pip-ephem-wheel-cache-5hq13ugh 2022-12-01T18:32:15,965 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-01T18:32:15,973 2 location(s) to search for versions of biobb-adapters: 2022-12-01T18:32:15,973 * https://pypi.org/simple/biobb-adapters/ 2022-12-01T18:32:15,973 * https://www.piwheels.org/simple/biobb-adapters/ 2022-12-01T18:32:15,974 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2022-12-01T18:32:15,975 Getting page https://pypi.org/simple/biobb-adapters/ 2022-12-01T18:32:15,978 Found index url https://pypi.org/simple 2022-12-01T18:32:16,213 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2022-12-01T18:32:16,223 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,224 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2022-12-01T18:32:16,225 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,226 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2022-12-01T18:32:16,227 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,228 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2022-12-01T18:32:16,229 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,230 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2022-12-01T18:32:16,231 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,232 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2022-12-01T18:32:16,233 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,234 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2022-12-01T18:32:16,235 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,236 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2022-12-01T18:32:16,237 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2022-12-01T18:32:16,238 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2022-12-01T18:32:16,239 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2022-12-01T18:32:16,240 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2022-12-01T18:32:16,242 Found index url https://www.piwheels.org/simple 2022-12-01T18:32:16,460 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2022-12-01T18:32:16,468 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,468 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,469 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,469 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,470 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,470 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,471 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-01T18:32:16,472 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2022-12-01T18:32:16,472 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2022-12-01T18:32:16,510 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2022-12-01T18:32:16,540 Collecting biobb-adapters==3.8.0 2022-12-01T18:32:16,545 Created temporary directory: /tmp/pip-unpack-mhrgwugo 2022-12-01T18:32:18,354 Downloading biobb_adapters-3.8.0.tar.gz (39.4 MB) 2022-12-01T18:32:40,635 Added biobb-adapters==3.8.0 from https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-visfohdc' 2022-12-01T18:32:40,639 Running setup.py (path:/tmp/pip-wheel-6p3ajfam/biobb-adapters_d57a6f4698aa49d2818d643fa6ab582c/setup.py) egg_info for package biobb-adapters 2022-12-01T18:32:40,640 Created temporary directory: /tmp/pip-pip-egg-info-jhxxv8rh 2022-12-01T18:32:40,641 Preparing metadata (setup.py): started 2022-12-01T18:32:40,643 Running command python setup.py egg_info 2022-12-01T18:32:42,938 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-01T18:32:43,176 running egg_info 2022-12-01T18:32:43,182 creating /tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info 2022-12-01T18:32:43,243 writing /tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/PKG-INFO 2022-12-01T18:32:43,248 writing dependency_links to /tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/dependency_links.txt 2022-12-01T18:32:43,252 writing requirements to /tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/requires.txt 2022-12-01T18:32:43,254 writing top-level names to /tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/top_level.txt 2022-12-01T18:32:43,256 writing manifest file '/tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/SOURCES.txt' 2022-12-01T18:32:43,529 reading manifest file '/tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/SOURCES.txt' 2022-12-01T18:32:43,532 reading manifest template 'MANIFEST.in' 2022-12-01T18:32:44,021 writing manifest file '/tmp/pip-pip-egg-info-jhxxv8rh/biobb_adapters.egg-info/SOURCES.txt' 2022-12-01T18:32:44,225 Preparing metadata (setup.py): finished with status 'done' 2022-12-01T18:32:44,238 Source in /tmp/pip-wheel-6p3ajfam/biobb-adapters_d57a6f4698aa49d2818d643fa6ab582c has version 3.8.0, which satisfies requirement biobb-adapters==3.8.0 from https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz 2022-12-01T18:32:44,240 Removed biobb-adapters==3.8.0 from https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-visfohdc' 2022-12-01T18:32:44,255 Created temporary directory: /tmp/pip-unpack-63rrw6uy 2022-12-01T18:32:44,256 Building wheels for collected packages: biobb-adapters 2022-12-01T18:32:44,265 Created temporary directory: /tmp/pip-wheel-es4iq_w5 2022-12-01T18:32:44,266 Building wheel for biobb-adapters (setup.py): started 2022-12-01T18:32:44,268 Destination directory: /tmp/pip-wheel-es4iq_w5 2022-12-01T18:32:44,268 Running command python setup.py bdist_wheel 2022-12-01T18:32:46,455 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-01T18:32:46,728 running bdist_wheel 2022-12-01T18:32:47,463 running build 2022-12-01T18:32:47,464 running build_py 2022-12-01T18:32:47,531 creating build 2022-12-01T18:32:47,532 creating build/lib 2022-12-01T18:32:47,533 creating build/lib/biobb_adapters 2022-12-01T18:32:47,535 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2022-12-01T18:32:47,539 creating build/lib/biobb_adapters/pycompss 2022-12-01T18:32:47,541 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2022-12-01T18:32:47,544 creating build/lib/biobb_adapters/pycompss/biobb_io 2022-12-01T18:32:47,546 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2022-12-01T18:32:47,549 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2022-12-01T18:32:47,551 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2022-12-01T18:32:47,555 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2022-12-01T18:32:47,556 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2022-12-01T18:32:47,560 creating build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:32:47,561 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:32:47,564 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:32:47,568 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2022-12-01T18:32:47,569 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2022-12-01T18:32:47,573 creating build/lib/biobb_adapters/pycompss/biobb_ml 2022-12-01T18:32:47,574 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2022-12-01T18:32:47,578 creating build/lib/biobb_adapters/pycompss/biobb_md 2022-12-01T18:32:47,579 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2022-12-01T18:32:47,583 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2022-12-01T18:32:47,584 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2022-12-01T18:32:47,588 creating build/lib/biobb_adapters/pycompss/biobb_model 2022-12-01T18:32:47,589 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2022-12-01T18:32:47,593 creating build/lib/biobb_adapters/pycompss/biobb_amber 2022-12-01T18:32:47,594 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2022-12-01T18:32:47,598 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2022-12-01T18:32:47,599 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2022-12-01T18:32:47,603 creating build/lib/biobb_adapters/pycompss/biobb_vs 2022-12-01T18:32:47,604 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2022-12-01T18:32:47,610 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,611 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,614 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,617 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,620 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,624 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,626 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,629 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,633 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,636 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,638 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,642 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,645 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,648 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,651 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,654 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,657 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,660 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,663 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,666 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:32:47,670 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,672 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,675 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,678 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,681 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,684 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,687 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:32:47,692 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,693 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,696 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,699 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,702 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,705 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,708 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,712 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,715 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,718 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:32:47,723 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,725 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,728 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,731 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,734 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,737 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,740 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,743 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,746 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,749 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:32:47,754 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,756 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,759 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,762 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,765 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,768 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:32:47,775 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,777 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,780 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,783 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,786 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,789 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,792 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,796 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,799 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,802 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,805 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,808 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,812 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,815 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,818 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,821 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,824 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,827 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,831 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,835 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,838 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,841 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,844 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,847 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,851 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,855 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,858 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,861 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:32:47,866 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,867 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,871 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,874 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,876 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,879 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:32:47,884 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,886 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,889 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,892 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,895 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,898 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,901 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,904 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,908 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,911 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:32:47,916 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,917 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,920 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,923 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,926 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,929 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,933 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,936 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:32:47,941 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:32:47,942 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:32:47,945 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:32:47,948 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:32:47,951 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:32:47,956 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,958 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,961 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,964 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,967 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,970 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,973 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,976 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,979 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:32:47,984 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:47,986 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:47,988 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:47,992 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:47,995 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:47,998 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:48,001 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:48,004 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:48,007 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:32:48,012 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:32:48,013 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:32:48,016 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:32:48,019 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:32:48,023 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:32:48,028 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,029 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,032 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,035 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,038 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,042 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,045 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,048 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,051 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,054 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,057 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,061 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:32:48,065 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,067 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,069 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,072 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,076 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,079 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:32:48,084 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,085 copying biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,088 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,091 copying biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,094 copying biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,098 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,101 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,104 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,107 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,110 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,113 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,116 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,119 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:32:48,125 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,126 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,130 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,132 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,135 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,138 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,142 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,145 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,148 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,151 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,154 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,157 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,160 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:32:48,164 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:32:48,166 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:32:48,169 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:32:48,173 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:32:48,174 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:32:48,178 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:32:48,182 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:32:48,183 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:32:48,186 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:32:48,191 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,192 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,195 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,198 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,201 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,204 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:32:48,209 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:32:48,210 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:32:48,214 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:32:48,218 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:32:48,219 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:32:48,222 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:32:48,225 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:32:48,230 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:32:48,231 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:32:48,234 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:32:48,237 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:32:48,242 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:32:48,243 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:32:48,246 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:32:48,249 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:32:48,254 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:32:48,255 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:32:48,258 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:32:48,262 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:32:48,264 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:32:48,267 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:32:48,270 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:32:48,276 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,278 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,282 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,284 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,287 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,290 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,293 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,297 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,299 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,303 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,306 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,309 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,312 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,315 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,318 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,322 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,325 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,328 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,331 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,334 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,337 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,340 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,344 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,347 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,350 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,353 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:32:48,359 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,361 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,364 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,367 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,370 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,373 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,376 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,379 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,382 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,385 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,388 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,391 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,394 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,397 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,400 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,403 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,407 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,410 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:32:48,414 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:32:48,416 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:32:48,418 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:32:48,422 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:32:48,426 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,427 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,430 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,433 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,436 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,439 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:32:48,444 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,445 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,449 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,452 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,455 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,458 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:32:48,462 running egg_info 2022-12-01T18:32:48,608 writing biobb_adapters.egg-info/PKG-INFO 2022-12-01T18:32:48,654 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2022-12-01T18:32:48,658 writing requirements to biobb_adapters.egg-info/requires.txt 2022-12-01T18:32:48,660 writing top-level names to biobb_adapters.egg-info/top_level.txt 2022-12-01T18:32:48,802 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2022-12-01T18:32:48,848 reading manifest template 'MANIFEST.in' 2022-12-01T18:32:49,331 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2022-12-01T18:32:49,339 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,339 !! 2022-12-01T18:32:49,340 ############################ 2022-12-01T18:32:49,341 # Package would be ignored # 2022-12-01T18:32:49,341 ############################ 2022-12-01T18:32:49,341 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package, 2022-12-01T18:32:49,341 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,342 'biobb_adapters.cwl.biobb_amber' has been automatically added to the distribution only 2022-12-01T18:32:49,342 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,343 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,343 Please make sure that 'biobb_adapters.cwl.biobb_amber' is included as a package by using 2022-12-01T18:32:49,344 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,344 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,344 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,345 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,345 documentation page. 2022-12-01T18:32:49,346 !! 2022-12-01T18:32:49,347 check.warn(importable) 2022-12-01T18:32:49,347 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.ambpdb' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,347 !! 2022-12-01T18:32:49,348 ############################ 2022-12-01T18:32:49,348 # Package would be ignored # 2022-12-01T18:32:49,349 ############################ 2022-12-01T18:32:49,349 Python recognizes 'biobb_adapters.cwl.biobb_amber.ambpdb' as an importable package, 2022-12-01T18:32:49,349 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,350 'biobb_adapters.cwl.biobb_amber.ambpdb' has been automatically added to the distribution only 2022-12-01T18:32:49,350 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,351 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,351 Please make sure that 'biobb_adapters.cwl.biobb_amber.ambpdb' is included as a package by using 2022-12-01T18:32:49,351 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,352 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,352 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,353 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,353 documentation page. 2022-12-01T18:32:49,354 !! 2022-12-01T18:32:49,354 check.warn(importable) 2022-12-01T18:32:49,355 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.cpptraj' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,355 !! 2022-12-01T18:32:49,356 ############################ 2022-12-01T18:32:49,356 # Package would be ignored # 2022-12-01T18:32:49,356 ############################ 2022-12-01T18:32:49,357 Python recognizes 'biobb_adapters.cwl.biobb_amber.cpptraj' as an importable package, 2022-12-01T18:32:49,357 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,357 'biobb_adapters.cwl.biobb_amber.cpptraj' has been automatically added to the distribution only 2022-12-01T18:32:49,358 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,358 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,359 Please make sure that 'biobb_adapters.cwl.biobb_amber.cpptraj' is included as a package by using 2022-12-01T18:32:49,359 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,359 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,360 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,360 documentation page. 2022-12-01T18:32:49,361 !! 2022-12-01T18:32:49,362 check.warn(importable) 2022-12-01T18:32:49,362 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.leap' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,362 !! 2022-12-01T18:32:49,363 ############################ 2022-12-01T18:32:49,364 # Package would be ignored # 2022-12-01T18:32:49,364 ############################ 2022-12-01T18:32:49,364 Python recognizes 'biobb_adapters.cwl.biobb_amber.leap' as an importable package, 2022-12-01T18:32:49,364 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,365 'biobb_adapters.cwl.biobb_amber.leap' has been automatically added to the distribution only 2022-12-01T18:32:49,365 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,365 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,366 Please make sure that 'biobb_adapters.cwl.biobb_amber.leap' is included as a package by using 2022-12-01T18:32:49,366 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,367 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,367 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,368 documentation page. 2022-12-01T18:32:49,369 !! 2022-12-01T18:32:49,369 check.warn(importable) 2022-12-01T18:32:49,370 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.nap' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,370 !! 2022-12-01T18:32:49,371 ############################ 2022-12-01T18:32:49,371 # Package would be ignored # 2022-12-01T18:32:49,371 ############################ 2022-12-01T18:32:49,372 Python recognizes 'biobb_adapters.cwl.biobb_amber.nap' as an importable package, 2022-12-01T18:32:49,372 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,373 'biobb_adapters.cwl.biobb_amber.nap' has been automatically added to the distribution only 2022-12-01T18:32:49,373 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,373 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,374 Please make sure that 'biobb_adapters.cwl.biobb_amber.nap' is included as a package by using 2022-12-01T18:32:49,374 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,374 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,375 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,375 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,375 documentation page. 2022-12-01T18:32:49,376 !! 2022-12-01T18:32:49,377 check.warn(importable) 2022-12-01T18:32:49,377 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.parmed' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,377 !! 2022-12-01T18:32:49,378 ############################ 2022-12-01T18:32:49,379 # Package would be ignored # 2022-12-01T18:32:49,379 ############################ 2022-12-01T18:32:49,379 Python recognizes 'biobb_adapters.cwl.biobb_amber.parmed' as an importable package, 2022-12-01T18:32:49,379 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,380 'biobb_adapters.cwl.biobb_amber.parmed' has been automatically added to the distribution only 2022-12-01T18:32:49,380 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,381 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,381 Please make sure that 'biobb_adapters.cwl.biobb_amber.parmed' is included as a package by using 2022-12-01T18:32:49,381 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,382 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,382 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,383 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,383 documentation page. 2022-12-01T18:32:49,384 !! 2022-12-01T18:32:49,384 check.warn(importable) 2022-12-01T18:32:49,385 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pdb4amber' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,385 !! 2022-12-01T18:32:49,386 ############################ 2022-12-01T18:32:49,386 # Package would be ignored # 2022-12-01T18:32:49,386 ############################ 2022-12-01T18:32:49,387 Python recognizes 'biobb_adapters.cwl.biobb_amber.pdb4amber' as an importable package, 2022-12-01T18:32:49,387 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,387 'biobb_adapters.cwl.biobb_amber.pdb4amber' has been automatically added to the distribution only 2022-12-01T18:32:49,388 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,388 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,389 Please make sure that 'biobb_adapters.cwl.biobb_amber.pdb4amber' is included as a package by using 2022-12-01T18:32:49,389 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,389 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,389 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,390 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,390 documentation page. 2022-12-01T18:32:49,391 !! 2022-12-01T18:32:49,392 check.warn(importable) 2022-12-01T18:32:49,392 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pmemd' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,392 !! 2022-12-01T18:32:49,393 ############################ 2022-12-01T18:32:49,393 # Package would be ignored # 2022-12-01T18:32:49,394 ############################ 2022-12-01T18:32:49,394 Python recognizes 'biobb_adapters.cwl.biobb_amber.pmemd' as an importable package, 2022-12-01T18:32:49,394 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,395 'biobb_adapters.cwl.biobb_amber.pmemd' has been automatically added to the distribution only 2022-12-01T18:32:49,395 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,395 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,396 Please make sure that 'biobb_adapters.cwl.biobb_amber.pmemd' is included as a package by using 2022-12-01T18:32:49,396 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,396 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,397 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,397 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,398 documentation page. 2022-12-01T18:32:49,398 !! 2022-12-01T18:32:49,399 check.warn(importable) 2022-12-01T18:32:49,399 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.process' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,400 !! 2022-12-01T18:32:49,401 ############################ 2022-12-01T18:32:49,401 # Package would be ignored # 2022-12-01T18:32:49,401 ############################ 2022-12-01T18:32:49,401 Python recognizes 'biobb_adapters.cwl.biobb_amber.process' as an importable package, 2022-12-01T18:32:49,402 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,402 'biobb_adapters.cwl.biobb_amber.process' has been automatically added to the distribution only 2022-12-01T18:32:49,403 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,403 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,403 Please make sure that 'biobb_adapters.cwl.biobb_amber.process' is included as a package by using 2022-12-01T18:32:49,404 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,404 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,404 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,405 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,405 documentation page. 2022-12-01T18:32:49,406 !! 2022-12-01T18:32:49,406 check.warn(importable) 2022-12-01T18:32:49,407 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.sander' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,407 !! 2022-12-01T18:32:49,408 ############################ 2022-12-01T18:32:49,408 # Package would be ignored # 2022-12-01T18:32:49,408 ############################ 2022-12-01T18:32:49,409 Python recognizes 'biobb_adapters.cwl.biobb_amber.sander' as an importable package, 2022-12-01T18:32:49,409 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,410 'biobb_adapters.cwl.biobb_amber.sander' has been automatically added to the distribution only 2022-12-01T18:32:49,410 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,410 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,411 Please make sure that 'biobb_adapters.cwl.biobb_amber.sander' is included as a package by using 2022-12-01T18:32:49,411 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,411 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,412 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,412 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,412 documentation page. 2022-12-01T18:32:49,413 !! 2022-12-01T18:32:49,414 check.warn(importable) 2022-12-01T18:32:49,414 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,414 !! 2022-12-01T18:32:49,415 ############################ 2022-12-01T18:32:49,415 # Package would be ignored # 2022-12-01T18:32:49,416 ############################ 2022-12-01T18:32:49,416 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package, 2022-12-01T18:32:49,416 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,417 'biobb_adapters.cwl.biobb_analysis' has been automatically added to the distribution only 2022-12-01T18:32:49,417 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,417 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,418 Please make sure that 'biobb_adapters.cwl.biobb_analysis' is included as a package by using 2022-12-01T18:32:49,418 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,419 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,419 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,419 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,420 documentation page. 2022-12-01T18:32:49,421 !! 2022-12-01T18:32:49,421 check.warn(importable) 2022-12-01T18:32:49,422 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,422 !! 2022-12-01T18:32:49,423 ############################ 2022-12-01T18:32:49,423 # Package would be ignored # 2022-12-01T18:32:49,423 ############################ 2022-12-01T18:32:49,424 Python recognizes 'biobb_adapters.cwl.biobb_analysis.ambertools' as an importable package, 2022-12-01T18:32:49,424 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,424 'biobb_adapters.cwl.biobb_analysis.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,425 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,425 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,425 Please make sure that 'biobb_adapters.cwl.biobb_analysis.ambertools' is included as a package by using 2022-12-01T18:32:49,426 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,426 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,426 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,427 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,427 documentation page. 2022-12-01T18:32:49,428 !! 2022-12-01T18:32:49,429 check.warn(importable) 2022-12-01T18:32:49,429 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,429 !! 2022-12-01T18:32:49,430 ############################ 2022-12-01T18:32:49,430 # Package would be ignored # 2022-12-01T18:32:49,431 ############################ 2022-12-01T18:32:49,431 Python recognizes 'biobb_adapters.cwl.biobb_analysis.gromacs' as an importable package, 2022-12-01T18:32:49,431 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,432 'biobb_adapters.cwl.biobb_analysis.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,432 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,432 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,433 Please make sure that 'biobb_adapters.cwl.biobb_analysis.gromacs' is included as a package by using 2022-12-01T18:32:49,433 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,433 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,434 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,434 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,434 documentation page. 2022-12-01T18:32:49,435 !! 2022-12-01T18:32:49,436 check.warn(importable) 2022-12-01T18:32:49,436 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,436 !! 2022-12-01T18:32:49,437 ############################ 2022-12-01T18:32:49,438 # Package would be ignored # 2022-12-01T18:32:49,438 ############################ 2022-12-01T18:32:49,438 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test' as an importable package, 2022-12-01T18:32:49,438 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,439 'biobb_adapters.cwl.biobb_analysis.test' has been automatically added to the distribution only 2022-12-01T18:32:49,439 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,439 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,440 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test' is included as a package by using 2022-12-01T18:32:49,440 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,441 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,441 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,442 documentation page. 2022-12-01T18:32:49,443 !! 2022-12-01T18:32:49,443 check.warn(importable) 2022-12-01T18:32:49,443 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,444 !! 2022-12-01T18:32:49,445 ############################ 2022-12-01T18:32:49,445 # Package would be ignored # 2022-12-01T18:32:49,445 ############################ 2022-12-01T18:32:49,445 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as an importable package, 2022-12-01T18:32:49,446 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,446 'biobb_adapters.cwl.biobb_analysis.test.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,446 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,447 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,447 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.ambertools' is included as a package by using 2022-12-01T18:32:49,448 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,448 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,449 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,449 documentation page. 2022-12-01T18:32:49,450 !! 2022-12-01T18:32:49,450 check.warn(importable) 2022-12-01T18:32:49,451 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,451 !! 2022-12-01T18:32:49,452 ############################ 2022-12-01T18:32:49,452 # Package would be ignored # 2022-12-01T18:32:49,452 ############################ 2022-12-01T18:32:49,453 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as an importable package, 2022-12-01T18:32:49,453 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,453 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,454 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,454 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,455 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' is included as a package by using 2022-12-01T18:32:49,455 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,455 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,455 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,456 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,456 documentation page. 2022-12-01T18:32:49,457 !! 2022-12-01T18:32:49,458 check.warn(importable) 2022-12-01T18:32:49,458 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,458 !! 2022-12-01T18:32:49,459 ############################ 2022-12-01T18:32:49,459 # Package would be ignored # 2022-12-01T18:32:49,460 ############################ 2022-12-01T18:32:49,460 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as an importable package, 2022-12-01T18:32:49,460 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,461 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,461 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,461 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,462 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' is included as a package by using 2022-12-01T18:32:49,462 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,463 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,463 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,463 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,464 documentation page. 2022-12-01T18:32:49,464 !! 2022-12-01T18:32:49,465 check.warn(importable) 2022-12-01T18:32:49,465 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,466 !! 2022-12-01T18:32:49,466 ############################ 2022-12-01T18:32:49,467 # Package would be ignored # 2022-12-01T18:32:49,467 ############################ 2022-12-01T18:32:49,467 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as an importable package, 2022-12-01T18:32:49,467 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,468 'biobb_adapters.cwl.biobb_analysis.test.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,468 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,468 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,469 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.gromacs' is included as a package by using 2022-12-01T18:32:49,469 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,470 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,470 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,471 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,471 documentation page. 2022-12-01T18:32:49,472 !! 2022-12-01T18:32:49,472 check.warn(importable) 2022-12-01T18:32:49,473 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,473 !! 2022-12-01T18:32:49,474 ############################ 2022-12-01T18:32:49,474 # Package would be ignored # 2022-12-01T18:32:49,474 ############################ 2022-12-01T18:32:49,474 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package, 2022-12-01T18:32:49,475 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,475 'biobb_adapters.cwl.biobb_chemistry' has been automatically added to the distribution only 2022-12-01T18:32:49,476 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,476 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,476 Please make sure that 'biobb_adapters.cwl.biobb_chemistry' is included as a package by using 2022-12-01T18:32:49,477 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,477 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,478 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,478 documentation page. 2022-12-01T18:32:49,479 !! 2022-12-01T18:32:49,479 check.warn(importable) 2022-12-01T18:32:49,480 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.acpype' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,480 !! 2022-12-01T18:32:49,481 ############################ 2022-12-01T18:32:49,481 # Package would be ignored # 2022-12-01T18:32:49,481 ############################ 2022-12-01T18:32:49,482 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.acpype' as an importable package, 2022-12-01T18:32:49,482 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,482 'biobb_adapters.cwl.biobb_chemistry.acpype' has been automatically added to the distribution only 2022-12-01T18:32:49,483 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,483 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,484 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.acpype' is included as a package by using 2022-12-01T18:32:49,484 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,484 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,484 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,485 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,485 documentation page. 2022-12-01T18:32:49,486 !! 2022-12-01T18:32:49,487 check.warn(importable) 2022-12-01T18:32:49,487 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,487 !! 2022-12-01T18:32:49,488 ############################ 2022-12-01T18:32:49,488 # Package would be ignored # 2022-12-01T18:32:49,489 ############################ 2022-12-01T18:32:49,489 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.ambertools' as an importable package, 2022-12-01T18:32:49,489 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,490 'biobb_adapters.cwl.biobb_chemistry.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,490 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,490 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,491 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.ambertools' is included as a package by using 2022-12-01T18:32:49,491 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,492 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,492 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,492 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,493 documentation page. 2022-12-01T18:32:49,493 !! 2022-12-01T18:32:49,494 check.warn(importable) 2022-12-01T18:32:49,494 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.babelm' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,495 !! 2022-12-01T18:32:49,495 ############################ 2022-12-01T18:32:49,496 # Package would be ignored # 2022-12-01T18:32:49,496 ############################ 2022-12-01T18:32:49,496 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.babelm' as an importable package, 2022-12-01T18:32:49,497 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,497 'biobb_adapters.cwl.biobb_chemistry.babelm' has been automatically added to the distribution only 2022-12-01T18:32:49,497 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,498 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,498 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.babelm' is included as a package by using 2022-12-01T18:32:49,498 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,499 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,499 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,500 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,500 documentation page. 2022-12-01T18:32:49,501 !! 2022-12-01T18:32:49,501 check.warn(importable) 2022-12-01T18:32:49,502 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,502 !! 2022-12-01T18:32:49,503 ############################ 2022-12-01T18:32:49,503 # Package would be ignored # 2022-12-01T18:32:49,503 ############################ 2022-12-01T18:32:49,504 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test' as an importable package, 2022-12-01T18:32:49,504 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,504 'biobb_adapters.cwl.biobb_chemistry.test' has been automatically added to the distribution only 2022-12-01T18:32:49,505 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,505 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,505 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test' is included as a package by using 2022-12-01T18:32:49,506 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,506 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,506 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,507 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,507 documentation page. 2022-12-01T18:32:49,508 !! 2022-12-01T18:32:49,509 check.warn(importable) 2022-12-01T18:32:49,509 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,509 !! 2022-12-01T18:32:49,510 ############################ 2022-12-01T18:32:49,510 # Package would be ignored # 2022-12-01T18:32:49,511 ############################ 2022-12-01T18:32:49,511 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as an importable package, 2022-12-01T18:32:49,511 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,512 'biobb_adapters.cwl.biobb_chemistry.test.acpype' has been automatically added to the distribution only 2022-12-01T18:32:49,512 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,512 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,513 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.acpype' is included as a package by using 2022-12-01T18:32:49,513 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,514 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,514 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,514 documentation page. 2022-12-01T18:32:49,515 !! 2022-12-01T18:32:49,516 check.warn(importable) 2022-12-01T18:32:49,516 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,516 !! 2022-12-01T18:32:49,517 ############################ 2022-12-01T18:32:49,517 # Package would be ignored # 2022-12-01T18:32:49,518 ############################ 2022-12-01T18:32:49,518 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as an importable package, 2022-12-01T18:32:49,518 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,519 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,519 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,519 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,520 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' is included as a package by using 2022-12-01T18:32:49,520 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,521 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,522 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,522 documentation page. 2022-12-01T18:32:49,523 !! 2022-12-01T18:32:49,523 check.warn(importable) 2022-12-01T18:32:49,524 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,524 !! 2022-12-01T18:32:49,525 ############################ 2022-12-01T18:32:49,525 # Package would be ignored # 2022-12-01T18:32:49,525 ############################ 2022-12-01T18:32:49,525 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as an importable package, 2022-12-01T18:32:49,526 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,526 'biobb_adapters.cwl.biobb_chemistry.test.babelm' has been automatically added to the distribution only 2022-12-01T18:32:49,527 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,527 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,528 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.babelm' is included as a package by using 2022-12-01T18:32:49,528 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,528 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,528 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,529 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,529 documentation page. 2022-12-01T18:32:49,530 !! 2022-12-01T18:32:49,531 check.warn(importable) 2022-12-01T18:32:49,531 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,531 !! 2022-12-01T18:32:49,532 ############################ 2022-12-01T18:32:49,532 # Package would be ignored # 2022-12-01T18:32:49,533 ############################ 2022-12-01T18:32:49,533 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as an importable package, 2022-12-01T18:32:49,533 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,534 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' has been automatically added to the distribution only 2022-12-01T18:32:49,534 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,534 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,535 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' is included as a package by using 2022-12-01T18:32:49,535 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,536 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,536 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,536 documentation page. 2022-12-01T18:32:49,537 !! 2022-12-01T18:32:49,538 check.warn(importable) 2022-12-01T18:32:49,538 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,538 !! 2022-12-01T18:32:49,539 ############################ 2022-12-01T18:32:49,539 # Package would be ignored # 2022-12-01T18:32:49,540 ############################ 2022-12-01T18:32:49,540 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as an importable package, 2022-12-01T18:32:49,540 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,541 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' has been automatically added to the distribution only 2022-12-01T18:32:49,541 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,541 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,542 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' is included as a package by using 2022-12-01T18:32:49,542 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,543 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,543 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,544 documentation page. 2022-12-01T18:32:49,545 !! 2022-12-01T18:32:49,545 check.warn(importable) 2022-12-01T18:32:49,545 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,546 !! 2022-12-01T18:32:49,547 ############################ 2022-12-01T18:32:49,547 # Package would be ignored # 2022-12-01T18:32:49,547 ############################ 2022-12-01T18:32:49,547 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as an importable package, 2022-12-01T18:32:49,548 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,548 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' has been automatically added to the distribution only 2022-12-01T18:32:49,548 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,549 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,549 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' is included as a package by using 2022-12-01T18:32:49,550 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,550 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,550 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,551 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,551 documentation page. 2022-12-01T18:32:49,552 !! 2022-12-01T18:32:49,552 check.warn(importable) 2022-12-01T18:32:49,553 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_cmip' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,553 !! 2022-12-01T18:32:49,554 ############################ 2022-12-01T18:32:49,554 # Package would be ignored # 2022-12-01T18:32:49,554 ############################ 2022-12-01T18:32:49,555 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package, 2022-12-01T18:32:49,555 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,555 'biobb_adapters.cwl.biobb_cmip' has been automatically added to the distribution only 2022-12-01T18:32:49,556 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,556 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,556 Please make sure that 'biobb_adapters.cwl.biobb_cmip' is included as a package by using 2022-12-01T18:32:49,557 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,557 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,557 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,558 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,558 documentation page. 2022-12-01T18:32:49,559 !! 2022-12-01T18:32:49,560 check.warn(importable) 2022-12-01T18:32:49,560 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_dna' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,560 !! 2022-12-01T18:32:49,561 ############################ 2022-12-01T18:32:49,561 # Package would be ignored # 2022-12-01T18:32:49,561 ############################ 2022-12-01T18:32:49,562 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package, 2022-12-01T18:32:49,562 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,563 'biobb_adapters.cwl.biobb_dna' has been automatically added to the distribution only 2022-12-01T18:32:49,563 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,563 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,564 Please make sure that 'biobb_adapters.cwl.biobb_dna' is included as a package by using 2022-12-01T18:32:49,564 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,564 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,565 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,565 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,565 documentation page. 2022-12-01T18:32:49,567 !! 2022-12-01T18:32:49,567 check.warn(importable) 2022-12-01T18:32:49,568 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,569 !! 2022-12-01T18:32:49,570 ############################ 2022-12-01T18:32:49,571 # Package would be ignored # 2022-12-01T18:32:49,571 ############################ 2022-12-01T18:32:49,572 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package, 2022-12-01T18:32:49,573 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,573 'biobb_adapters.cwl.biobb_io' has been automatically added to the distribution only 2022-12-01T18:32:49,574 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,574 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,575 Please make sure that 'biobb_adapters.cwl.biobb_io' is included as a package by using 2022-12-01T18:32:49,577 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,578 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,579 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,579 documentation page. 2022-12-01T18:32:49,581 !! 2022-12-01T18:32:49,583 check.warn(importable) 2022-12-01T18:32:49,583 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io.mmb_api' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,584 !! 2022-12-01T18:32:49,585 ############################ 2022-12-01T18:32:49,585 # Package would be ignored # 2022-12-01T18:32:49,586 ############################ 2022-12-01T18:32:49,587 Python recognizes 'biobb_adapters.cwl.biobb_io.mmb_api' as an importable package, 2022-12-01T18:32:49,587 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,588 'biobb_adapters.cwl.biobb_io.mmb_api' has been automatically added to the distribution only 2022-12-01T18:32:49,588 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,589 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,590 Please make sure that 'biobb_adapters.cwl.biobb_io.mmb_api' is included as a package by using 2022-12-01T18:32:49,591 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,591 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,592 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,592 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,593 documentation page. 2022-12-01T18:32:49,593 !! 2022-12-01T18:32:49,594 check.warn(importable) 2022-12-01T18:32:49,594 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,595 !! 2022-12-01T18:32:49,596 ############################ 2022-12-01T18:32:49,596 # Package would be ignored # 2022-12-01T18:32:49,596 ############################ 2022-12-01T18:32:49,597 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package, 2022-12-01T18:32:49,597 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,597 'biobb_adapters.cwl.biobb_md' has been automatically added to the distribution only 2022-12-01T18:32:49,598 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,598 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,599 Please make sure that 'biobb_adapters.cwl.biobb_md' is included as a package by using 2022-12-01T18:32:49,599 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,599 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,600 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,600 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,601 documentation page. 2022-12-01T18:32:49,602 !! 2022-12-01T18:32:49,602 check.warn(importable) 2022-12-01T18:32:49,603 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,603 !! 2022-12-01T18:32:49,604 ############################ 2022-12-01T18:32:49,604 # Package would be ignored # 2022-12-01T18:32:49,605 ############################ 2022-12-01T18:32:49,605 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs' as an importable package, 2022-12-01T18:32:49,605 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,606 'biobb_adapters.cwl.biobb_md.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,606 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,606 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,607 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs' is included as a package by using 2022-12-01T18:32:49,607 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,608 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,608 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,609 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,609 documentation page. 2022-12-01T18:32:49,610 !! 2022-12-01T18:32:49,610 check.warn(importable) 2022-12-01T18:32:49,611 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,611 !! 2022-12-01T18:32:49,612 ############################ 2022-12-01T18:32:49,612 # Package would be ignored # 2022-12-01T18:32:49,613 ############################ 2022-12-01T18:32:49,613 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs_extra' as an importable package, 2022-12-01T18:32:49,613 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,614 'biobb_adapters.cwl.biobb_md.gromacs_extra' has been automatically added to the distribution only 2022-12-01T18:32:49,614 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,614 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,615 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs_extra' is included as a package by using 2022-12-01T18:32:49,615 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,616 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,616 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,617 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,617 documentation page. 2022-12-01T18:32:49,618 !! 2022-12-01T18:32:49,618 check.warn(importable) 2022-12-01T18:32:49,619 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,619 !! 2022-12-01T18:32:49,620 ############################ 2022-12-01T18:32:49,620 # Package would be ignored # 2022-12-01T18:32:49,621 ############################ 2022-12-01T18:32:49,621 Python recognizes 'biobb_adapters.cwl.biobb_md.test' as an importable package, 2022-12-01T18:32:49,621 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,622 'biobb_adapters.cwl.biobb_md.test' has been automatically added to the distribution only 2022-12-01T18:32:49,622 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,623 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,623 Please make sure that 'biobb_adapters.cwl.biobb_md.test' is included as a package by using 2022-12-01T18:32:49,623 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,624 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,624 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,625 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,625 documentation page. 2022-12-01T18:32:49,626 !! 2022-12-01T18:32:49,626 check.warn(importable) 2022-12-01T18:32:49,627 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,627 !! 2022-12-01T18:32:49,628 ############################ 2022-12-01T18:32:49,628 # Package would be ignored # 2022-12-01T18:32:49,629 ############################ 2022-12-01T18:32:49,629 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as an importable package, 2022-12-01T18:32:49,629 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,630 'biobb_adapters.cwl.biobb_md.test.data.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,630 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,630 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,631 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs' is included as a package by using 2022-12-01T18:32:49,631 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,632 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,633 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,633 documentation page. 2022-12-01T18:32:49,634 !! 2022-12-01T18:32:49,634 check.warn(importable) 2022-12-01T18:32:49,635 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,635 !! 2022-12-01T18:32:49,636 ############################ 2022-12-01T18:32:49,636 # Package would be ignored # 2022-12-01T18:32:49,637 ############################ 2022-12-01T18:32:49,637 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as an importable package, 2022-12-01T18:32:49,637 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,638 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' has been automatically added to the distribution only 2022-12-01T18:32:49,638 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,638 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,639 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' is included as a package by using 2022-12-01T18:32:49,639 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,640 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,640 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,641 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,641 documentation page. 2022-12-01T18:32:49,642 !! 2022-12-01T18:32:49,643 check.warn(importable) 2022-12-01T18:32:49,643 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,643 !! 2022-12-01T18:32:49,644 ############################ 2022-12-01T18:32:49,644 # Package would be ignored # 2022-12-01T18:32:49,645 ############################ 2022-12-01T18:32:49,645 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs' as an importable package, 2022-12-01T18:32:49,645 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,646 'biobb_adapters.cwl.biobb_md.test.gromacs' has been automatically added to the distribution only 2022-12-01T18:32:49,646 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,647 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,647 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs' is included as a package by using 2022-12-01T18:32:49,648 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,648 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,648 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,649 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,649 documentation page. 2022-12-01T18:32:49,650 !! 2022-12-01T18:32:49,651 check.warn(importable) 2022-12-01T18:32:49,651 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,651 !! 2022-12-01T18:32:49,652 ############################ 2022-12-01T18:32:49,653 # Package would be ignored # 2022-12-01T18:32:49,653 ############################ 2022-12-01T18:32:49,653 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as an importable package, 2022-12-01T18:32:49,654 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,654 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' has been automatically added to the distribution only 2022-12-01T18:32:49,655 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,655 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,656 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' is included as a package by using 2022-12-01T18:32:49,656 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,657 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,657 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,657 documentation page. 2022-12-01T18:32:49,658 !! 2022-12-01T18:32:49,659 check.warn(importable) 2022-12-01T18:32:49,659 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,660 !! 2022-12-01T18:32:49,660 ############################ 2022-12-01T18:32:49,661 # Package would be ignored # 2022-12-01T18:32:49,661 ############################ 2022-12-01T18:32:49,661 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package, 2022-12-01T18:32:49,662 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,662 'biobb_adapters.cwl.biobb_ml' has been automatically added to the distribution only 2022-12-01T18:32:49,663 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,663 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,664 Please make sure that 'biobb_adapters.cwl.biobb_ml' is included as a package by using 2022-12-01T18:32:49,664 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,664 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,665 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,665 documentation page. 2022-12-01T18:32:49,666 !! 2022-12-01T18:32:49,667 check.warn(importable) 2022-12-01T18:32:49,667 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.classification' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,667 !! 2022-12-01T18:32:49,668 ############################ 2022-12-01T18:32:49,669 # Package would be ignored # 2022-12-01T18:32:49,669 ############################ 2022-12-01T18:32:49,669 Python recognizes 'biobb_adapters.cwl.biobb_ml.classification' as an importable package, 2022-12-01T18:32:49,670 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,670 'biobb_adapters.cwl.biobb_ml.classification' has been automatically added to the distribution only 2022-12-01T18:32:49,671 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,671 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,671 Please make sure that 'biobb_adapters.cwl.biobb_ml.classification' is included as a package by using 2022-12-01T18:32:49,672 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,672 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,673 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,673 documentation page. 2022-12-01T18:32:49,674 !! 2022-12-01T18:32:49,675 check.warn(importable) 2022-12-01T18:32:49,675 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.clustering' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,676 !! 2022-12-01T18:32:49,676 ############################ 2022-12-01T18:32:49,677 # Package would be ignored # 2022-12-01T18:32:49,677 ############################ 2022-12-01T18:32:49,677 Python recognizes 'biobb_adapters.cwl.biobb_ml.clustering' as an importable package, 2022-12-01T18:32:49,678 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,678 'biobb_adapters.cwl.biobb_ml.clustering' has been automatically added to the distribution only 2022-12-01T18:32:49,679 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,679 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,679 Please make sure that 'biobb_adapters.cwl.biobb_ml.clustering' is included as a package by using 2022-12-01T18:32:49,680 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,680 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,681 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,681 documentation page. 2022-12-01T18:32:49,682 !! 2022-12-01T18:32:49,683 check.warn(importable) 2022-12-01T18:32:49,683 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,683 !! 2022-12-01T18:32:49,684 ############################ 2022-12-01T18:32:49,685 # Package would be ignored # 2022-12-01T18:32:49,685 ############################ 2022-12-01T18:32:49,685 Python recognizes 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as an importable package, 2022-12-01T18:32:49,686 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,686 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' has been automatically added to the distribution only 2022-12-01T18:32:49,687 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,687 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,687 Please make sure that 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' is included as a package by using 2022-12-01T18:32:49,688 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,688 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,688 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,689 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,689 documentation page. 2022-12-01T18:32:49,690 !! 2022-12-01T18:32:49,691 check.warn(importable) 2022-12-01T18:32:49,691 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.neural_networks' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,692 !! 2022-12-01T18:32:49,692 ############################ 2022-12-01T18:32:49,693 # Package would be ignored # 2022-12-01T18:32:49,693 ############################ 2022-12-01T18:32:49,693 Python recognizes 'biobb_adapters.cwl.biobb_ml.neural_networks' as an importable package, 2022-12-01T18:32:49,694 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,694 'biobb_adapters.cwl.biobb_ml.neural_networks' has been automatically added to the distribution only 2022-12-01T18:32:49,695 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,695 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,696 Please make sure that 'biobb_adapters.cwl.biobb_ml.neural_networks' is included as a package by using 2022-12-01T18:32:49,696 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,697 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,697 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,698 documentation page. 2022-12-01T18:32:49,698 !! 2022-12-01T18:32:49,699 check.warn(importable) 2022-12-01T18:32:49,699 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.regression' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,700 !! 2022-12-01T18:32:49,701 ############################ 2022-12-01T18:32:49,701 # Package would be ignored # 2022-12-01T18:32:49,701 ############################ 2022-12-01T18:32:49,702 Python recognizes 'biobb_adapters.cwl.biobb_ml.regression' as an importable package, 2022-12-01T18:32:49,702 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,703 'biobb_adapters.cwl.biobb_ml.regression' has been automatically added to the distribution only 2022-12-01T18:32:49,703 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,703 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,704 Please make sure that 'biobb_adapters.cwl.biobb_ml.regression' is included as a package by using 2022-12-01T18:32:49,704 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,705 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,705 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,705 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,706 documentation page. 2022-12-01T18:32:49,707 !! 2022-12-01T18:32:49,707 check.warn(importable) 2022-12-01T18:32:49,708 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.resampling' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,708 !! 2022-12-01T18:32:49,709 ############################ 2022-12-01T18:32:49,709 # Package would be ignored # 2022-12-01T18:32:49,709 ############################ 2022-12-01T18:32:49,710 Python recognizes 'biobb_adapters.cwl.biobb_ml.resampling' as an importable package, 2022-12-01T18:32:49,710 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,711 'biobb_adapters.cwl.biobb_ml.resampling' has been automatically added to the distribution only 2022-12-01T18:32:49,711 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,711 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,712 Please make sure that 'biobb_adapters.cwl.biobb_ml.resampling' is included as a package by using 2022-12-01T18:32:49,712 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,713 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,713 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,713 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,714 documentation page. 2022-12-01T18:32:49,715 !! 2022-12-01T18:32:49,715 check.warn(importable) 2022-12-01T18:32:49,716 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.utils' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,716 !! 2022-12-01T18:32:49,717 ############################ 2022-12-01T18:32:49,717 # Package would be ignored # 2022-12-01T18:32:49,717 ############################ 2022-12-01T18:32:49,718 Python recognizes 'biobb_adapters.cwl.biobb_ml.utils' as an importable package, 2022-12-01T18:32:49,718 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,719 'biobb_adapters.cwl.biobb_ml.utils' has been automatically added to the distribution only 2022-12-01T18:32:49,719 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,719 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,720 Please make sure that 'biobb_adapters.cwl.biobb_ml.utils' is included as a package by using 2022-12-01T18:32:49,720 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,720 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,721 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,721 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,722 documentation page. 2022-12-01T18:32:49,723 !! 2022-12-01T18:32:49,723 check.warn(importable) 2022-12-01T18:32:49,724 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,724 !! 2022-12-01T18:32:49,725 ############################ 2022-12-01T18:32:49,725 # Package would be ignored # 2022-12-01T18:32:49,725 ############################ 2022-12-01T18:32:49,726 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package, 2022-12-01T18:32:49,726 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,727 'biobb_adapters.cwl.biobb_model' has been automatically added to the distribution only 2022-12-01T18:32:49,727 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,727 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,728 Please make sure that 'biobb_adapters.cwl.biobb_model' is included as a package by using 2022-12-01T18:32:49,728 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,728 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,729 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,729 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,730 documentation page. 2022-12-01T18:32:49,731 !! 2022-12-01T18:32:49,731 check.warn(importable) 2022-12-01T18:32:49,732 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.model' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,732 !! 2022-12-01T18:32:49,733 ############################ 2022-12-01T18:32:49,733 # Package would be ignored # 2022-12-01T18:32:49,733 ############################ 2022-12-01T18:32:49,734 Python recognizes 'biobb_adapters.cwl.biobb_model.model' as an importable package, 2022-12-01T18:32:49,734 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,735 'biobb_adapters.cwl.biobb_model.model' has been automatically added to the distribution only 2022-12-01T18:32:49,735 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,735 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,736 Please make sure that 'biobb_adapters.cwl.biobb_model.model' is included as a package by using 2022-12-01T18:32:49,736 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,737 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,737 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,737 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,738 documentation page. 2022-12-01T18:32:49,739 !! 2022-12-01T18:32:49,739 check.warn(importable) 2022-12-01T18:32:49,740 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,740 !! 2022-12-01T18:32:49,741 ############################ 2022-12-01T18:32:49,741 # Package would be ignored # 2022-12-01T18:32:49,741 ############################ 2022-12-01T18:32:49,742 Python recognizes 'biobb_adapters.cwl.biobb_model.test' as an importable package, 2022-12-01T18:32:49,742 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,743 'biobb_adapters.cwl.biobb_model.test' has been automatically added to the distribution only 2022-12-01T18:32:49,743 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,743 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,744 Please make sure that 'biobb_adapters.cwl.biobb_model.test' is included as a package by using 2022-12-01T18:32:49,744 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,744 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,745 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,745 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,746 documentation page. 2022-12-01T18:32:49,747 !! 2022-12-01T18:32:49,747 check.warn(importable) 2022-12-01T18:32:49,747 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.data.model' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,748 !! 2022-12-01T18:32:49,749 ############################ 2022-12-01T18:32:49,749 # Package would be ignored # 2022-12-01T18:32:49,749 ############################ 2022-12-01T18:32:49,750 Python recognizes 'biobb_adapters.cwl.biobb_model.test.data.model' as an importable package, 2022-12-01T18:32:49,750 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,751 'biobb_adapters.cwl.biobb_model.test.data.model' has been automatically added to the distribution only 2022-12-01T18:32:49,751 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,751 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,752 Please make sure that 'biobb_adapters.cwl.biobb_model.test.data.model' is included as a package by using 2022-12-01T18:32:49,753 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,753 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,754 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,754 documentation page. 2022-12-01T18:32:49,755 !! 2022-12-01T18:32:49,756 check.warn(importable) 2022-12-01T18:32:49,756 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.model' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,756 !! 2022-12-01T18:32:49,757 ############################ 2022-12-01T18:32:49,758 # Package would be ignored # 2022-12-01T18:32:49,758 ############################ 2022-12-01T18:32:49,758 Python recognizes 'biobb_adapters.cwl.biobb_model.test.model' as an importable package, 2022-12-01T18:32:49,759 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,759 'biobb_adapters.cwl.biobb_model.test.model' has been automatically added to the distribution only 2022-12-01T18:32:49,759 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,760 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,760 Please make sure that 'biobb_adapters.cwl.biobb_model.test.model' is included as a package by using 2022-12-01T18:32:49,761 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,761 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,761 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,762 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,762 documentation page. 2022-12-01T18:32:49,763 !! 2022-12-01T18:32:49,764 check.warn(importable) 2022-12-01T18:32:49,764 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,764 !! 2022-12-01T18:32:49,765 ############################ 2022-12-01T18:32:49,766 # Package would be ignored # 2022-12-01T18:32:49,766 ############################ 2022-12-01T18:32:49,766 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package, 2022-12-01T18:32:49,767 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,767 'biobb_adapters.cwl.biobb_pmx' has been automatically added to the distribution only 2022-12-01T18:32:49,767 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,768 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,768 Please make sure that 'biobb_adapters.cwl.biobb_pmx' is included as a package by using 2022-12-01T18:32:49,769 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,769 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,770 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,770 documentation page. 2022-12-01T18:32:49,771 !! 2022-12-01T18:32:49,772 check.warn(importable) 2022-12-01T18:32:49,772 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx.pmx' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,772 !! 2022-12-01T18:32:49,773 ############################ 2022-12-01T18:32:49,774 # Package would be ignored # 2022-12-01T18:32:49,774 ############################ 2022-12-01T18:32:49,774 Python recognizes 'biobb_adapters.cwl.biobb_pmx.pmx' as an importable package, 2022-12-01T18:32:49,775 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,775 'biobb_adapters.cwl.biobb_pmx.pmx' has been automatically added to the distribution only 2022-12-01T18:32:49,776 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,776 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,777 Please make sure that 'biobb_adapters.cwl.biobb_pmx.pmx' is included as a package by using 2022-12-01T18:32:49,777 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,777 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,777 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,778 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,778 documentation page. 2022-12-01T18:32:49,779 !! 2022-12-01T18:32:49,780 check.warn(importable) 2022-12-01T18:32:49,780 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,781 !! 2022-12-01T18:32:49,781 ############################ 2022-12-01T18:32:49,782 # Package would be ignored # 2022-12-01T18:32:49,782 ############################ 2022-12-01T18:32:49,782 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package, 2022-12-01T18:32:49,783 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,783 'biobb_adapters.cwl.biobb_structure_utils' has been automatically added to the distribution only 2022-12-01T18:32:49,784 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,784 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,785 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is included as a package by using 2022-12-01T18:32:49,785 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,785 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,785 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,786 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,786 documentation page. 2022-12-01T18:32:49,787 !! 2022-12-01T18:32:49,788 check.warn(importable) 2022-12-01T18:32:49,788 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,788 !! 2022-12-01T18:32:49,789 ############################ 2022-12-01T18:32:49,790 # Package would be ignored # 2022-12-01T18:32:49,790 ############################ 2022-12-01T18:32:49,790 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test' as an importable package, 2022-12-01T18:32:49,791 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,791 'biobb_adapters.cwl.biobb_structure_utils.test' has been automatically added to the distribution only 2022-12-01T18:32:49,792 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,792 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,793 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test' is included as a package by using 2022-12-01T18:32:49,793 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,793 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,793 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,794 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,794 documentation page. 2022-12-01T18:32:49,795 !! 2022-12-01T18:32:49,796 check.warn(importable) 2022-12-01T18:32:49,796 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.data' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,797 !! 2022-12-01T18:32:49,797 ############################ 2022-12-01T18:32:49,798 # Package would be ignored # 2022-12-01T18:32:49,798 ############################ 2022-12-01T18:32:49,798 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.data' as an importable package, 2022-12-01T18:32:49,799 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,799 'biobb_adapters.cwl.biobb_structure_utils.test.data' has been automatically added to the distribution only 2022-12-01T18:32:49,800 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,800 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,801 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.data' is included as a package by using 2022-12-01T18:32:49,801 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,801 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,802 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,803 documentation page. 2022-12-01T18:32:49,804 !! 2022-12-01T18:32:49,804 check.warn(importable) 2022-12-01T18:32:49,804 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,805 !! 2022-12-01T18:32:49,806 ############################ 2022-12-01T18:32:49,806 # Package would be ignored # 2022-12-01T18:32:49,806 ############################ 2022-12-01T18:32:49,807 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as an importable package, 2022-12-01T18:32:49,807 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,808 'biobb_adapters.cwl.biobb_structure_utils.test.utils' has been automatically added to the distribution only 2022-12-01T18:32:49,808 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,808 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,809 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.utils' is included as a package by using 2022-12-01T18:32:49,809 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,810 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,810 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,811 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,811 documentation page. 2022-12-01T18:32:49,812 !! 2022-12-01T18:32:49,812 check.warn(importable) 2022-12-01T18:32:49,813 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.utils' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,813 !! 2022-12-01T18:32:49,814 ############################ 2022-12-01T18:32:49,814 # Package would be ignored # 2022-12-01T18:32:49,815 ############################ 2022-12-01T18:32:49,815 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.utils' as an importable package, 2022-12-01T18:32:49,815 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,816 'biobb_adapters.cwl.biobb_structure_utils.utils' has been automatically added to the distribution only 2022-12-01T18:32:49,816 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,816 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,817 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.utils' is included as a package by using 2022-12-01T18:32:49,817 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,818 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,819 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,819 documentation page. 2022-12-01T18:32:49,820 !! 2022-12-01T18:32:49,820 check.warn(importable) 2022-12-01T18:32:49,821 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,821 !! 2022-12-01T18:32:49,822 ############################ 2022-12-01T18:32:49,822 # Package would be ignored # 2022-12-01T18:32:49,823 ############################ 2022-12-01T18:32:49,823 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package, 2022-12-01T18:32:49,823 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,824 'biobb_adapters.cwl.biobb_vs' has been automatically added to the distribution only 2022-12-01T18:32:49,824 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,824 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,825 Please make sure that 'biobb_adapters.cwl.biobb_vs' is included as a package by using 2022-12-01T18:32:49,825 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,826 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,826 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,826 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,827 documentation page. 2022-12-01T18:32:49,828 !! 2022-12-01T18:32:49,828 check.warn(importable) 2022-12-01T18:32:49,829 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.fpocket' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,829 !! 2022-12-01T18:32:49,830 ############################ 2022-12-01T18:32:49,830 # Package would be ignored # 2022-12-01T18:32:49,830 ############################ 2022-12-01T18:32:49,831 Python recognizes 'biobb_adapters.cwl.biobb_vs.fpocket' as an importable package, 2022-12-01T18:32:49,831 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,832 'biobb_adapters.cwl.biobb_vs.fpocket' has been automatically added to the distribution only 2022-12-01T18:32:49,832 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,832 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,833 Please make sure that 'biobb_adapters.cwl.biobb_vs.fpocket' is included as a package by using 2022-12-01T18:32:49,833 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,833 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,834 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,834 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,835 documentation page. 2022-12-01T18:32:49,836 !! 2022-12-01T18:32:49,836 check.warn(importable) 2022-12-01T18:32:49,837 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.utils' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,837 !! 2022-12-01T18:32:49,838 ############################ 2022-12-01T18:32:49,838 # Package would be ignored # 2022-12-01T18:32:49,838 ############################ 2022-12-01T18:32:49,839 Python recognizes 'biobb_adapters.cwl.biobb_vs.utils' as an importable package, 2022-12-01T18:32:49,839 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,840 'biobb_adapters.cwl.biobb_vs.utils' has been automatically added to the distribution only 2022-12-01T18:32:49,840 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,840 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,841 Please make sure that 'biobb_adapters.cwl.biobb_vs.utils' is included as a package by using 2022-12-01T18:32:49,841 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,842 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,842 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,843 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,843 documentation page. 2022-12-01T18:32:49,844 !! 2022-12-01T18:32:49,844 check.warn(importable) 2022-12-01T18:32:49,845 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.vina' as data is deprecated, please list it in `packages`. 2022-12-01T18:32:49,845 !! 2022-12-01T18:32:49,846 ############################ 2022-12-01T18:32:49,846 # Package would be ignored # 2022-12-01T18:32:49,846 ############################ 2022-12-01T18:32:49,847 Python recognizes 'biobb_adapters.cwl.biobb_vs.vina' as an importable package, 2022-12-01T18:32:49,847 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T18:32:49,848 'biobb_adapters.cwl.biobb_vs.vina' has been automatically added to the distribution only 2022-12-01T18:32:49,848 because it may contain data files, but this behavior is likely to change 2022-12-01T18:32:49,848 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T18:32:49,849 Please make sure that 'biobb_adapters.cwl.biobb_vs.vina' is included as a package by using 2022-12-01T18:32:49,849 the `packages` configuration field or the proper discovery methods 2022-12-01T18:32:49,849 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T18:32:49,850 instead of `find_packages(...)`/`find:`). 2022-12-01T18:32:49,850 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T18:32:49,851 documentation page. 2022-12-01T18:32:49,852 !! 2022-12-01T18:32:49,853 check.warn(importable) 2022-12-01T18:32:49,853 creating build/lib/biobb_adapters/cwl 2022-12-01T18:32:49,853 creating build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,853 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,854 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,854 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,854 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,855 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,855 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,855 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,856 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,856 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,856 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,857 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,857 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,857 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,858 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,858 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,858 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-01T18:32:49,858 creating build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-01T18:32:49,859 copying biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-01T18:32:49,859 creating build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-01T18:32:49,860 copying biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-01T18:32:49,860 creating build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:32:49,860 copying biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:32:49,861 copying biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:32:49,861 copying biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:32:49,861 copying biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:32:49,862 creating build/lib/biobb_adapters/cwl/biobb_amber/nap 2022-12-01T18:32:49,862 copying biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/nap 2022-12-01T18:32:49,862 creating build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:32:49,863 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:32:49,863 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:32:49,863 creating build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-01T18:32:49,863 copying biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-01T18:32:49,864 creating build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-01T18:32:49,864 copying biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-01T18:32:49,864 creating build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:32:49,865 copying biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:32:49,865 copying biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:32:49,865 creating build/lib/biobb_adapters/cwl/biobb_amber/sander 2022-12-01T18:32:49,866 copying biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/sander 2022-12-01T18:32:49,866 creating build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,866 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,867 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,867 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,867 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,868 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,868 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,868 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,869 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,869 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,869 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,869 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,870 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,870 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,870 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,871 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,871 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,871 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,872 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,872 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,872 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:32:49,873 creating build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,873 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,873 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,873 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,874 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,874 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,874 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,875 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,875 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,875 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,876 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,876 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,876 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:32:49,877 creating build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,877 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,877 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,878 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,878 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,878 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,879 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,879 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,879 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:32:49,880 creating build/lib/biobb_adapters/cwl/biobb_analysis/test 2022-12-01T18:32:49,881 copying biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_analysis/test 2022-12-01T18:32:49,885 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,886 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,890 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,894 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,898 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,902 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,906 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,910 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,914 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,917 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,921 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,924 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,928 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:32:49,932 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data 2022-12-01T18:32:49,932 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:32:49,934 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:32:50,113 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:32:50,392 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:32:50,395 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:32:50,402 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:32:50,461 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:32:50,772 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,774 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,778 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,783 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,786 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,790 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,794 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,798 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,802 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:32:50,805 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,807 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,811 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,815 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,819 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,823 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,827 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,831 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,834 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,838 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,842 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:50,846 creating build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:50,847 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:50,852 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:50,857 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:50,861 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:50,866 creating build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:50,868 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:50,873 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:50,877 creating build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:50,879 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:50,884 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:50,888 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:50,893 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:50,897 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test 2022-12-01T18:32:50,900 copying biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_chemistry/test 2022-12-01T18:32:50,904 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:50,906 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:50,911 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:50,916 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:50,922 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:50,931 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:50,933 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:50,937 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:50,941 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:50,942 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:50,946 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:50,950 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:50,954 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:50,957 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data 2022-12-01T18:32:50,958 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:50,960 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:50,964 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:50,968 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:50,970 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:50,975 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:50,979 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:50,980 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:50,985 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:50,988 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:50,992 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:50,996 creating build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:50,997 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:51,002 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:51,006 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:51,009 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:51,013 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:51,017 creating build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,018 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,022 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,026 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,030 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,034 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,037 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,041 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,045 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,049 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,053 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,056 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,060 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,065 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,068 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,072 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,076 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,080 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-01T18:32:51,084 creating build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,085 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,089 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,092 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,096 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,100 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,103 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,107 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,111 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,115 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,119 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,122 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,126 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,129 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,133 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:51,136 creating build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,138 copying biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,142 copying biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,146 copying biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,149 copying biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,153 copying biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,157 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,160 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,164 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,167 copying biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,171 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,175 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,178 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,182 copying biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:51,185 creating build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,187 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,191 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,195 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,199 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,202 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,206 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,210 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,214 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,218 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,222 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,226 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,230 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:51,234 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,235 copying biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,239 copying biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,243 copying biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,247 copying biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,251 copying biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,254 copying biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,258 copying biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,262 copying biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:32:51,266 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-01T18:32:51,268 copying biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-01T18:32:51,272 creating build/lib/biobb_adapters/cwl/biobb_md/test 2022-12-01T18:32:51,273 copying biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_md/test 2022-12-01T18:32:51,277 creating build/lib/biobb_adapters/cwl/biobb_md/test/data 2022-12-01T18:32:51,278 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,280 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,510 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,684 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,692 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,798 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,823 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:51,979 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,028 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,051 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,229 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,258 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,657 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,760 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:52,861 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:53,107 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:53,279 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:53,287 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:53,310 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:32:53,311 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:32:53,942 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:32:54,340 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,341 copying biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,345 copying biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,349 copying biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,352 copying biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,356 copying biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,359 copying biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,363 copying biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,367 copying biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:32:54,370 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-01T18:32:54,372 copying biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-01T18:32:54,376 creating build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,377 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,381 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,385 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,389 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,393 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,396 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,400 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,404 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,407 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,412 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,416 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,420 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,423 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,427 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,431 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,435 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,438 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,442 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,446 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,450 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,454 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,457 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,461 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,465 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,468 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,472 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,476 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,480 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,484 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,487 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,491 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,495 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,498 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,502 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,506 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,509 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,513 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,517 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:54,521 creating build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,522 copying biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,526 copying biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,531 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,535 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,539 copying biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,544 copying biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,548 copying biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:54,553 creating build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,555 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,560 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,565 copying biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,569 copying biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,574 copying biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,578 copying biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,583 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,588 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:54,592 creating build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:54,594 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:54,599 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:54,603 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:54,608 creating build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,610 copying biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,615 copying biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,619 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,622 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,626 copying biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,630 copying biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:54,633 creating build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:54,635 copying biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:54,639 copying biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:54,642 copying biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:54,646 copying biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:54,650 creating build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:54,651 copying biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:54,655 copying biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:54,659 copying biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:54,663 creating build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,664 copying biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,668 copying biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,672 copying biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,676 copying biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,679 copying biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,683 copying biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,687 copying biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:54,690 creating build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,692 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,696 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,699 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,703 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,706 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,710 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,714 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,717 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,721 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-01T18:32:54,724 creating build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,726 copying biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,730 copying biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,733 copying biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,737 copying biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,741 copying biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,744 copying biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:32:54,748 creating build/lib/biobb_adapters/cwl/biobb_model/test 2022-12-01T18:32:54,749 copying biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_model/test 2022-12-01T18:32:54,753 creating build/lib/biobb_adapters/cwl/biobb_model/test/data 2022-12-01T18:32:54,753 creating build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-01T18:32:54,755 copying biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-01T18:32:54,783 creating build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:32:54,784 copying biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:32:54,788 copying biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:32:54,792 creating build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,793 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,797 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,802 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,805 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,809 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,813 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,817 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:32:54,821 creating build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:32:54,822 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:32:54,826 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:32:54,829 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:32:54,833 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,835 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,838 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,842 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,846 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,850 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,853 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,857 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,861 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,864 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,868 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,872 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,875 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,879 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,883 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,886 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:54,890 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-01T18:32:54,892 copying biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-01T18:32:54,896 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:54,897 copying biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:54,981 copying biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,173 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,368 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,588 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,612 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,617 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,636 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,641 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,704 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:55,999 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:56,197 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:56,218 copying biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:56,253 copying biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:56,258 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,261 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,265 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,268 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,272 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,276 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,280 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,284 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,288 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,292 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,296 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:56,299 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,301 copying biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,305 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,309 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,313 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,317 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,321 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,325 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,329 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,333 copying biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,337 copying biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,341 copying biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,345 copying biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:56,349 creating build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,350 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,355 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,359 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,363 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,367 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,372 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,376 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,380 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,384 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-01T18:32:56,388 creating build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:32:56,389 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:32:56,394 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:32:56,398 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:32:56,402 creating build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:32:56,404 copying biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:32:56,408 copying biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:32:56,412 copying biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:32:56,416 copying biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:32:56,420 creating build/lib/biobb_adapters/cwl/biobb_vs/vina 2022-12-01T18:32:56,422 copying biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/vina 2022-12-01T18:32:56,570 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-01T18:32:56,570 setuptools.SetuptoolsDeprecationWarning, 2022-12-01T18:32:56,634 installing to build/bdist.linux-armv7l/wheel 2022-12-01T18:32:56,635 running install 2022-12-01T18:32:56,698 running install_lib 2022-12-01T18:32:56,766 creating build/bdist.linux-armv7l 2022-12-01T18:32:56,767 creating build/bdist.linux-armv7l/wheel 2022-12-01T18:32:56,771 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2022-12-01T18:32:56,773 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters 2022-12-01T18:32:56,778 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2022-12-01T18:32:56,781 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,784 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,786 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,790 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,794 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,798 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,802 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,806 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,810 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,814 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,818 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,823 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,827 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,831 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,835 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-01T18:32:56,839 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,844 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,848 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,852 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,855 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,859 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,862 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,866 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,869 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,873 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,876 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,879 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,883 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,886 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-01T18:32:56,891 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,892 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,896 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,899 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,903 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,907 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-01T18:32:56,914 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:56,916 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:56,920 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:56,925 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2022-12-01T18:32:56,926 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2022-12-01T18:32:56,931 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data 2022-12-01T18:32:56,933 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:56,935 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:56,940 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-01T18:32:56,944 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:56,946 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:56,950 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:56,954 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:56,957 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-01T18:32:56,962 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:56,963 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:56,967 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-01T18:32:56,972 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:56,974 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:56,977 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:56,981 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:56,984 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-01T18:32:56,988 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:56,990 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:56,993 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:56,996 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:57,000 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-01T18:32:57,004 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:57,006 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:57,009 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-01T18:32:57,012 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,016 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,019 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,023 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,027 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:57,028 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:57,032 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:57,035 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:57,039 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-01T18:32:57,043 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,047 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:57,049 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:57,053 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:57,056 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:57,059 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-01T18:32:57,064 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:57,065 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:57,069 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-01T18:32:57,072 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,076 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,080 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-01T18:32:57,085 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,086 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,090 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,093 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,097 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,100 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,103 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,106 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,110 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:57,115 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-01T18:32:57,116 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-01T18:32:57,121 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,122 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,147 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,336 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,491 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,503 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,553 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,557 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,561 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,710 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,898 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:57,918 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:58,004 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:58,055 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:58,059 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-01T18:32:58,268 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,269 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,273 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,276 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,279 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,282 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,286 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,289 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,292 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,296 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,299 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-01T18:32:58,302 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,306 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,308 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,311 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,315 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,318 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,321 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,325 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,328 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,331 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,335 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,338 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,341 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,344 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-01T18:32:58,347 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,351 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,354 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,357 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,361 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,364 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-01T18:32:58,369 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,371 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,374 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,377 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,381 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,384 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,388 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,391 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,394 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,397 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,401 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,404 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,408 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:58,410 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:58,414 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:58,417 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:58,420 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-01T18:32:58,423 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,428 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,430 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,434 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,437 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,440 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,444 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,447 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,450 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,453 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-01T18:32:58,456 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,462 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,463 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,467 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,471 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,474 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,477 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,481 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-01T18:32:58,485 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:58,486 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:58,490 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:58,493 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-01T18:32:58,496 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,500 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,503 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,506 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,510 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,515 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,516 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,519 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,523 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,526 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,529 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,532 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,535 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-01T18:32:58,538 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,542 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,545 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,548 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,551 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,555 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,558 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,562 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,565 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,568 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,571 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,575 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,579 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,581 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,585 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,589 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,593 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,596 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,601 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,604 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-01T18:32:58,608 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,613 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,616 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,620 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,623 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,627 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,631 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:58,633 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:58,636 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:58,640 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-01T18:32:58,643 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,647 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-01T18:32:58,652 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:58,653 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:58,657 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:58,661 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:32:58,665 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2022-12-01T18:32:58,666 copying build/lib/biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2022-12-01T18:32:58,671 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data 2022-12-01T18:32:58,674 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:58,676 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:58,981 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,106 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,130 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,137 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,292 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,315 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,493 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,515 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,662 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,669 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:32:59,828 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,083 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,133 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,220 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,318 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,469 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-01T18:33:00,493 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:33:00,495 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:33:00,859 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-01T18:33:01,563 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,565 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,569 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,575 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,578 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,582 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,586 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,590 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,594 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-01T18:33:01,598 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-01T18:33:01,600 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-01T18:33:01,604 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,608 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,613 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,617 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,622 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,625 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,629 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,634 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,636 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,640 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,644 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,647 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,650 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,653 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,656 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,659 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-01T18:33:01,663 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,666 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-01T18:33:01,670 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-01T18:33:01,671 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-01T18:33:01,676 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,677 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,681 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,684 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,688 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,691 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,695 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,698 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-01T18:33:01,703 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:33:01,704 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:33:01,707 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:33:01,711 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-01T18:33:01,715 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,716 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,720 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,723 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,727 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2022-12-01T18:33:01,729 copying build/lib/biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2022-12-01T18:33:01,733 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data 2022-12-01T18:33:01,735 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-01T18:33:01,737 copying build/lib/biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-01T18:33:01,764 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:33:01,766 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:33:01,769 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-01T18:33:01,773 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,776 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,781 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,784 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,787 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,792 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,793 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,796 copying build/lib/biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,801 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,804 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,807 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,811 copying build/lib/biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-01T18:33:01,814 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-01T18:33:01,819 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,821 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-01T18:33:01,823 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-01T18:33:01,826 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,830 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,834 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,838 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2022-12-01T18:33:01,840 copying build/lib/biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2022-12-01T18:33:01,843 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,846 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,851 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2022-12-01T18:33:01,852 copying build/lib/biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2022-12-01T18:33:01,856 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,861 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:33:01,862 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:33:01,866 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:33:01,870 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:33:01,874 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-01T18:33:01,877 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,881 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,885 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-01T18:33:01,886 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-01T18:33:01,891 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,894 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,899 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:33:01,900 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:33:01,904 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-01T18:33:01,907 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,912 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-01T18:33:01,914 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-01T18:33:01,917 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,921 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:33:01,923 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:33:01,926 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-01T18:33:01,929 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,934 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-01T18:33:01,936 copying build/lib/biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-01T18:33:01,939 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,943 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,946 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-01T18:33:01,951 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,952 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,956 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,960 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,963 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,966 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,971 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,974 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,977 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,980 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,984 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,987 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,991 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,994 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:01,997 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:02,001 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:02,004 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:02,008 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-01T18:33:02,013 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,015 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,018 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,021 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,025 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,028 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,032 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2022-12-01T18:33:02,034 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2022-12-01T18:33:02,038 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data 2022-12-01T18:33:02,040 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:33:02,042 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:33:02,236 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-01T18:33:02,567 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:33:02,568 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:33:02,572 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:33:02,864 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-01T18:33:02,923 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,924 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,928 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,931 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,934 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,937 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,940 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,944 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,947 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,950 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,953 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,956 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,959 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-01T18:33:02,964 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,965 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,969 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,972 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,975 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,979 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,982 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,985 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,988 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-01T18:33:02,992 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,996 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:02,999 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,002 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,006 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,009 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,012 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,016 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,021 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,022 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,026 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,029 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,032 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,035 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,039 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,042 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,045 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,048 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,051 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,055 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,058 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-01T18:33:03,061 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,065 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,069 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,071 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,074 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,077 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,081 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,084 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,087 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,090 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,094 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-01T18:33:03,097 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,100 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,104 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,107 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,111 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-01T18:33:03,116 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,117 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,121 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,124 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,127 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,131 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2022-12-01T18:33:03,133 copying build/lib/biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2022-12-01T18:33:03,136 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,141 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:33:03,143 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:33:03,146 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:33:03,149 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:33:03,153 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-01T18:33:03,156 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,160 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:33:03,162 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:33:03,165 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:33:03,168 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-01T18:33:03,172 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,175 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,178 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-01T18:33:03,183 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2022-12-01T18:33:03,184 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2022-12-01T18:33:03,188 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2022-12-01T18:33:03,189 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2022-12-01T18:33:03,193 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,195 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,198 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,201 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,204 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,207 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,210 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,213 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,216 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,219 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,222 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,225 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,228 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,231 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,234 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,237 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,240 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,243 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,246 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,249 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-01T18:33:03,253 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2022-12-01T18:33:03,255 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2022-12-01T18:33:03,259 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,260 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,263 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,266 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,269 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,273 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,276 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-01T18:33:03,280 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2022-12-01T18:33:03,281 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2022-12-01T18:33:03,285 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,286 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,289 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,293 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,296 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,299 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,302 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,305 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,308 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,312 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-01T18:33:03,316 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,317 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,320 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,323 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,326 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,329 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,333 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,336 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,339 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,342 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-01T18:33:03,346 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,347 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,350 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,353 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,356 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,360 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-01T18:33:03,364 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:33:03,365 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:33:03,368 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-01T18:33:03,372 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2022-12-01T18:33:03,373 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2022-12-01T18:33:03,378 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,379 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,383 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,385 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,388 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,391 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,395 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,398 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,401 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,405 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,408 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,411 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,414 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,417 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,420 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,424 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,427 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,431 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,434 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,437 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,440 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,443 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,446 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,450 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,453 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,456 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,459 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,463 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-01T18:33:03,467 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2022-12-01T18:33:03,468 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2022-12-01T18:33:03,472 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,473 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,477 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,480 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,483 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,486 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-01T18:33:03,490 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,491 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,494 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,497 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,500 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,504 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,507 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,510 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,513 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,517 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-01T18:33:03,521 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,522 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,525 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,528 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,531 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,535 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,538 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,541 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-01T18:33:03,546 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:33:03,547 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:33:03,550 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:33:03,553 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:33:03,556 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-01T18:33:03,561 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,562 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,565 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,568 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,572 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,575 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,578 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,581 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,584 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-01T18:33:03,589 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,590 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,593 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,597 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,600 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,603 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,607 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,610 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,613 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-01T18:33:03,617 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:33:03,619 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:33:03,622 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:33:03,626 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:33:03,629 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-01T18:33:03,633 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2022-12-01T18:33:03,634 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2022-12-01T18:33:03,639 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,640 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,643 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,647 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,650 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,653 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,657 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,660 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,664 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,667 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,670 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,674 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-01T18:33:03,678 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,680 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,683 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,686 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,689 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,693 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-01T18:33:03,697 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2022-12-01T18:33:03,698 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2022-12-01T18:33:03,703 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,704 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,707 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,711 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,714 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,718 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,721 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,724 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,728 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,731 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,734 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,738 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,741 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-01T18:33:03,746 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2022-12-01T18:33:03,747 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2022-12-01T18:33:03,751 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,753 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,756 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,759 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,763 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,766 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,769 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,773 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,776 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,779 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,783 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,786 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,789 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-01T18:33:03,794 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2022-12-01T18:33:03,795 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2022-12-01T18:33:03,799 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:33:03,800 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:33:03,803 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-01T18:33:03,808 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:33:03,809 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:33:03,813 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-01T18:33:03,816 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:33:03,818 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:33:03,821 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-01T18:33:03,825 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,827 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,830 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,833 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,836 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,840 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-01T18:33:03,844 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:33:03,845 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:33:03,848 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-01T18:33:03,853 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:33:03,854 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:33:03,857 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:33:03,861 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-01T18:33:03,865 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:33:03,867 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:33:03,870 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:33:03,873 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-01T18:33:03,878 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:33:03,879 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:33:03,882 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:33:03,885 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-01T18:33:03,890 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:33:03,891 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:33:03,894 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-01T18:33:03,898 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:33:03,900 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:33:03,903 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:33:03,907 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-01T18:33:03,911 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2022-12-01T18:33:03,912 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2022-12-01T18:33:03,917 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,919 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,923 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,925 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,929 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,932 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,935 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,939 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,942 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,945 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,948 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,952 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,955 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,958 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,962 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,965 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,968 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,972 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,975 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,978 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,982 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,985 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,988 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,991 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,995 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:03,998 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-01T18:33:04,003 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,005 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,008 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,011 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,015 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,018 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,022 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,025 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,028 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,031 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,035 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,038 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,041 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,045 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,048 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,051 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,055 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,058 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-01T18:33:04,063 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2022-12-01T18:33:04,064 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2022-12-01T18:33:04,068 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:33:04,069 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:33:04,073 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:33:04,076 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-01T18:33:04,081 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,082 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,085 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,089 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,092 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,095 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-01T18:33:04,100 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,101 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,105 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,107 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,111 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,114 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-01T18:33:04,117 running install_egg_info 2022-12-01T18:33:04,192 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/biobb_adapters-3.8.0-py3.7.egg-info 2022-12-01T18:33:04,219 running install_scripts 2022-12-01T18:33:04,419 creating build/bdist.linux-armv7l/wheel/biobb_adapters-3.8.0.dist-info/WHEEL 2022-12-01T18:33:04,424 creating '/tmp/pip-wheel-es4iq_w5/biobb_adapters-3.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-01T18:33:04,428 adding 'biobb_adapters/__init__.py' 2022-12-01T18:33:04,434 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2022-12-01T18:33:04,437 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2022-12-01T18:33:04,440 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2022-12-01T18:33:04,443 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2022-12-01T18:33:04,446 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2022-12-01T18:33:04,449 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2022-12-01T18:33:04,451 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2022-12-01T18:33:04,454 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2022-12-01T18:33:04,457 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2022-12-01T18:33:04,460 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2022-12-01T18:33:04,463 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2022-12-01T18:33:04,465 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2022-12-01T18:33:04,468 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2022-12-01T18:33:04,471 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2022-12-01T18:33:04,474 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2022-12-01T18:33:04,477 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2022-12-01T18:33:04,481 adding 'biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl' 2022-12-01T18:33:04,485 adding 'biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl' 2022-12-01T18:33:04,489 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl' 2022-12-01T18:33:04,492 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl' 2022-12-01T18:33:04,494 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl' 2022-12-01T18:33:04,497 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl' 2022-12-01T18:33:04,501 adding 'biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl' 2022-12-01T18:33:04,505 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl' 2022-12-01T18:33:04,507 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl' 2022-12-01T18:33:04,511 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl' 2022-12-01T18:33:04,515 adding 'biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl' 2022-12-01T18:33:04,519 adding 'biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl' 2022-12-01T18:33:04,522 adding 'biobb_adapters/cwl/biobb_amber/process/process_minout.cwl' 2022-12-01T18:33:04,527 adding 'biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl' 2022-12-01T18:33:04,532 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2022-12-01T18:33:04,535 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2022-12-01T18:33:04,538 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2022-12-01T18:33:04,541 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2022-12-01T18:33:04,543 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2022-12-01T18:33:04,546 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2022-12-01T18:33:04,549 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2022-12-01T18:33:04,552 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2022-12-01T18:33:04,556 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2022-12-01T18:33:04,560 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2022-12-01T18:33:04,564 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2022-12-01T18:33:04,567 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2022-12-01T18:33:04,569 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2022-12-01T18:33:04,572 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2022-12-01T18:33:04,575 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2022-12-01T18:33:04,577 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2022-12-01T18:33:04,580 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2022-12-01T18:33:04,583 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2022-12-01T18:33:04,587 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2022-12-01T18:33:04,590 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2022-12-01T18:33:04,595 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl' 2022-12-01T18:33:04,598 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl' 2022-12-01T18:33:04,602 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl' 2022-12-01T18:33:04,606 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl' 2022-12-01T18:33:04,609 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl' 2022-12-01T18:33:04,612 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl' 2022-12-01T18:33:04,615 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl' 2022-12-01T18:33:04,618 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl' 2022-12-01T18:33:04,621 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl' 2022-12-01T18:33:04,624 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl' 2022-12-01T18:33:04,627 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl' 2022-12-01T18:33:04,630 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl' 2022-12-01T18:33:04,634 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl' 2022-12-01T18:33:04,637 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl' 2022-12-01T18:33:04,641 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl' 2022-12-01T18:33:04,644 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl' 2022-12-01T18:33:04,648 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl' 2022-12-01T18:33:04,652 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl' 2022-12-01T18:33:04,655 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl' 2022-12-01T18:33:04,658 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl' 2022-12-01T18:33:04,662 adding 'biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh' 2022-12-01T18:33:04,665 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml' 2022-12-01T18:33:04,668 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml' 2022-12-01T18:33:04,670 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml' 2022-12-01T18:33:04,672 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml' 2022-12-01T18:33:04,674 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml' 2022-12-01T18:33:04,677 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml' 2022-12-01T18:33:04,679 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml' 2022-12-01T18:33:04,681 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml' 2022-12-01T18:33:04,683 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml' 2022-12-01T18:33:04,686 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml' 2022-12-01T18:33:04,688 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml' 2022-12-01T18:33:04,690 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml' 2022-12-01T18:33:05,955 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top' 2022-12-01T18:33:08,862 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd' 2022-12-01T18:33:09,001 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr' 2022-12-01T18:33:09,388 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr' 2022-12-01T18:33:12,504 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr' 2022-12-01T18:33:12,663 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml' 2022-12-01T18:33:12,666 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml' 2022-12-01T18:33:12,668 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml' 2022-12-01T18:33:12,670 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml' 2022-12-01T18:33:12,672 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml' 2022-12-01T18:33:12,675 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml' 2022-12-01T18:33:12,677 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml' 2022-12-01T18:33:12,679 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml' 2022-12-01T18:33:12,683 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2022-12-01T18:33:12,686 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2022-12-01T18:33:12,689 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2022-12-01T18:33:12,692 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2022-12-01T18:33:12,694 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2022-12-01T18:33:12,697 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2022-12-01T18:33:12,700 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2022-12-01T18:33:12,703 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2022-12-01T18:33:12,705 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2022-12-01T18:33:12,708 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2022-12-01T18:33:12,712 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl' 2022-12-01T18:33:12,715 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl' 2022-12-01T18:33:12,718 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl' 2022-12-01T18:33:12,721 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl' 2022-12-01T18:33:12,724 adding 'biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl' 2022-12-01T18:33:12,727 adding 'biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl' 2022-12-01T18:33:12,731 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl' 2022-12-01T18:33:12,734 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl' 2022-12-01T18:33:12,737 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl' 2022-12-01T18:33:12,739 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl' 2022-12-01T18:33:12,743 adding 'biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh' 2022-12-01T18:33:12,746 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml' 2022-12-01T18:33:12,748 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml' 2022-12-01T18:33:12,751 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml' 2022-12-01T18:33:12,753 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml' 2022-12-01T18:33:12,756 adding 'biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml' 2022-12-01T18:33:12,758 adding 'biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml' 2022-12-01T18:33:12,761 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml' 2022-12-01T18:33:12,763 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml' 2022-12-01T18:33:12,765 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml' 2022-12-01T18:33:12,767 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml' 2022-12-01T18:33:12,772 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2' 2022-12-01T18:33:12,775 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb' 2022-12-01T18:33:12,779 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb' 2022-12-01T18:33:12,781 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb' 2022-12-01T18:33:12,786 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb' 2022-12-01T18:33:12,788 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb' 2022-12-01T18:33:12,791 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb' 2022-12-01T18:33:12,793 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi' 2022-12-01T18:33:12,797 adding 'biobb_adapters/cwl/biobb_cmip/cmip.cwl' 2022-12-01T18:33:12,800 adding 'biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl' 2022-12-01T18:33:12,802 adding 'biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl' 2022-12-01T18:33:12,805 adding 'biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl' 2022-12-01T18:33:12,807 adding 'biobb_adapters/cwl/biobb_cmip/titration.cwl' 2022-12-01T18:33:12,811 adding 'biobb_adapters/cwl/biobb_dna/average_stiffness.cwl' 2022-12-01T18:33:12,814 adding 'biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl' 2022-12-01T18:33:12,817 adding 'biobb_adapters/cwl/biobb_dna/biobb_canal.cwl' 2022-12-01T18:33:12,819 adding 'biobb_adapters/cwl/biobb_dna/biobb_canion.cwl' 2022-12-01T18:33:12,822 adding 'biobb_adapters/cwl/biobb_dna/biobb_curves.cwl' 2022-12-01T18:33:12,824 adding 'biobb_adapters/cwl/biobb_dna/bipopulations.cwl' 2022-12-01T18:33:12,827 adding 'biobb_adapters/cwl/biobb_dna/canonicalag.cwl' 2022-12-01T18:33:12,830 adding 'biobb_adapters/cwl/biobb_dna/dna_averages.cwl' 2022-12-01T18:33:12,832 adding 'biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl' 2022-12-01T18:33:12,835 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl' 2022-12-01T18:33:12,837 adding 'biobb_adapters/cwl/biobb_dna/interbpcorr.cwl' 2022-12-01T18:33:12,840 adding 'biobb_adapters/cwl/biobb_dna/interhpcorr.cwl' 2022-12-01T18:33:12,843 adding 'biobb_adapters/cwl/biobb_dna/interseqcorr.cwl' 2022-12-01T18:33:12,846 adding 'biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl' 2022-12-01T18:33:12,848 adding 'biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl' 2022-12-01T18:33:12,851 adding 'biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl' 2022-12-01T18:33:12,854 adding 'biobb_adapters/cwl/biobb_dna/puckering.cwl' 2022-12-01T18:33:12,857 adding 'biobb_adapters/cwl/biobb_io/alphafold.cwl' 2022-12-01T18:33:12,860 adding 'biobb_adapters/cwl/biobb_io/api_binding_site.cwl' 2022-12-01T18:33:12,862 adding 'biobb_adapters/cwl/biobb_io/canonical_fasta.cwl' 2022-12-01T18:33:12,865 adding 'biobb_adapters/cwl/biobb_io/drugbank.cwl' 2022-12-01T18:33:12,867 adding 'biobb_adapters/cwl/biobb_io/ideal_sdf.cwl' 2022-12-01T18:33:12,869 adding 'biobb_adapters/cwl/biobb_io/ligand.cwl' 2022-12-01T18:33:12,872 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl' 2022-12-01T18:33:12,874 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl' 2022-12-01T18:33:12,877 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl' 2022-12-01T18:33:12,879 adding 'biobb_adapters/cwl/biobb_io/mmcif.cwl' 2022-12-01T18:33:12,882 adding 'biobb_adapters/cwl/biobb_io/pdb.cwl' 2022-12-01T18:33:12,884 adding 'biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl' 2022-12-01T18:33:12,886 adding 'biobb_adapters/cwl/biobb_io/pdb_variants.cwl' 2022-12-01T18:33:12,889 adding 'biobb_adapters/cwl/biobb_io/structure_info.cwl' 2022-12-01T18:33:12,893 adding 'biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl' 2022-12-01T18:33:12,895 adding 'biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl' 2022-12-01T18:33:12,898 adding 'biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl' 2022-12-01T18:33:12,900 adding 'biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl' 2022-12-01T18:33:12,903 adding 'biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl' 2022-12-01T18:33:12,905 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl' 2022-12-01T18:33:12,907 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl' 2022-12-01T18:33:12,910 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl' 2022-12-01T18:33:12,912 adding 'biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl' 2022-12-01T18:33:12,914 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl' 2022-12-01T18:33:12,917 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl' 2022-12-01T18:33:12,919 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl' 2022-12-01T18:33:12,922 adding 'biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl' 2022-12-01T18:33:12,926 adding 'biobb_adapters/cwl/biobb_md/append_ligand.cwl' 2022-12-01T18:33:12,928 adding 'biobb_adapters/cwl/biobb_md/editconf.cwl' 2022-12-01T18:33:12,931 adding 'biobb_adapters/cwl/biobb_md/genion.cwl' 2022-12-01T18:33:12,934 adding 'biobb_adapters/cwl/biobb_md/genrestr.cwl' 2022-12-01T18:33:12,936 adding 'biobb_adapters/cwl/biobb_md/gmxselect.cwl' 2022-12-01T18:33:12,939 adding 'biobb_adapters/cwl/biobb_md/grompp.cwl' 2022-12-01T18:33:12,942 adding 'biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl' 2022-12-01T18:33:12,945 adding 'biobb_adapters/cwl/biobb_md/make_ndx.cwl' 2022-12-01T18:33:12,948 adding 'biobb_adapters/cwl/biobb_md/mdrun.cwl' 2022-12-01T18:33:12,950 adding 'biobb_adapters/cwl/biobb_md/ndx2resttop.cwl' 2022-12-01T18:33:12,954 adding 'biobb_adapters/cwl/biobb_md/pdb2gmx.cwl' 2022-12-01T18:33:12,957 adding 'biobb_adapters/cwl/biobb_md/solvate.cwl' 2022-12-01T18:33:12,962 adding 'biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl' 2022-12-01T18:33:12,965 adding 'biobb_adapters/cwl/biobb_md/gromacs/genion.cwl' 2022-12-01T18:33:12,967 adding 'biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl' 2022-12-01T18:33:12,970 adding 'biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl' 2022-12-01T18:33:12,973 adding 'biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl' 2022-12-01T18:33:12,975 adding 'biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl' 2022-12-01T18:33:12,977 adding 'biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl' 2022-12-01T18:33:12,980 adding 'biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl' 2022-12-01T18:33:12,983 adding 'biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl' 2022-12-01T18:33:12,987 adding 'biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh' 2022-12-01T18:33:16,698 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro' 2022-12-01T18:33:18,164 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr' 2022-12-01T18:33:18,263 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro' 2022-12-01T18:33:18,905 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr' 2022-12-01T18:33:19,067 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip' 2022-12-01T18:33:20,946 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro' 2022-12-01T18:33:21,531 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx' 2022-12-01T18:33:21,658 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip' 2022-12-01T18:33:23,532 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro' 2022-12-01T18:33:23,706 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip' 2022-12-01T18:33:27,859 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr' 2022-12-01T18:33:28,667 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr' 2022-12-01T18:33:29,633 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb' 2022-12-01T18:33:31,543 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro' 2022-12-01T18:33:32,964 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr' 2022-12-01T18:33:33,064 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro' 2022-12-01T18:33:33,175 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip' 2022-12-01T18:33:40,242 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx' 2022-12-01T18:33:43,359 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip' 2022-12-01T18:33:43,557 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml' 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'biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl' 2022-12-01T18:33:43,601 adding 'biobb_adapters/cwl/biobb_ml/classification_predict.cwl' 2022-12-01T18:33:43,604 adding 'biobb_adapters/cwl/biobb_ml/clustering_predict.cwl' 2022-12-01T18:33:43,607 adding 'biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl' 2022-12-01T18:33:43,610 adding 'biobb_adapters/cwl/biobb_ml/dbscan.cwl' 2022-12-01T18:33:43,613 adding 'biobb_adapters/cwl/biobb_ml/decision_tree.cwl' 2022-12-01T18:33:43,617 adding 'biobb_adapters/cwl/biobb_ml/dendrogram.cwl' 2022-12-01T18:33:43,620 adding 'biobb_adapters/cwl/biobb_ml/drop_columns.cwl' 2022-12-01T18:33:43,623 adding 'biobb_adapters/cwl/biobb_ml/dummy_variables.cwl' 2022-12-01T18:33:43,626 adding 'biobb_adapters/cwl/biobb_ml/k_means.cwl' 2022-12-01T18:33:43,629 adding 'biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl' 2022-12-01T18:33:43,632 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors.cwl' 2022-12-01T18:33:43,636 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl' 2022-12-01T18:33:43,639 adding 'biobb_adapters/cwl/biobb_ml/linear_regression.cwl' 2022-12-01T18:33:43,643 adding 'biobb_adapters/cwl/biobb_ml/logistic_regression.cwl' 2022-12-01T18:33:43,646 adding 'biobb_adapters/cwl/biobb_ml/map_variables.cwl' 2022-12-01T18:33:43,649 adding 'biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl' 2022-12-01T18:33:43,652 adding 'biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl' 2022-12-01T18:33:43,655 adding 'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2022-12-01T18:33:43,659 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2022-12-01T18:33:43,662 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2022-12-01T18:33:43,665 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2022-12-01T18:33:43,668 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2022-12-01T18:33:43,672 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2022-12-01T18:33:43,675 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2022-12-01T18:33:43,678 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2022-12-01T18:33:43,682 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2022-12-01T18:33:43,685 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2022-12-01T18:33:43,688 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2022-12-01T18:33:43,691 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 2022-12-01T18:33:43,694 adding 'biobb_adapters/cwl/biobb_ml/scale_columns.cwl' 2022-12-01T18:33:43,697 adding 'biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl' 2022-12-01T18:33:43,701 adding 'biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl' 2022-12-01T18:33:43,704 adding 'biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl' 2022-12-01T18:33:43,707 adding 'biobb_adapters/cwl/biobb_ml/undersampling.cwl' 2022-12-01T18:33:43,712 adding 'biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl' 2022-12-01T18:33:43,715 adding 'biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl' 2022-12-01T18:33:43,719 adding 'biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl' 2022-12-01T18:33:43,722 adding 'biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl' 2022-12-01T18:33:43,725 adding 'biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl' 2022-12-01T18:33:43,728 adding 'biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl' 2022-12-01T18:33:43,732 adding 'biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl' 2022-12-01T18:33:43,736 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl' 2022-12-01T18:33:43,740 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl' 2022-12-01T18:33:43,743 adding 'biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl' 2022-12-01T18:33:43,746 adding 'biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl' 2022-12-01T18:33:43,748 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl' 2022-12-01T18:33:43,751 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl' 2022-12-01T18:33:43,754 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl' 2022-12-01T18:33:43,756 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl' 2022-12-01T18:33:43,761 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl' 2022-12-01T18:33:43,763 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl' 2022-12-01T18:33:43,766 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl' 2022-12-01T18:33:43,770 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl' 2022-12-01T18:33:43,773 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl' 2022-12-01T18:33:43,775 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl' 2022-12-01T18:33:43,778 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl' 2022-12-01T18:33:43,781 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl' 2022-12-01T18:33:43,783 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl' 2022-12-01T18:33:43,787 adding 'biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl' 2022-12-01T18:33:43,790 adding 'biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl' 2022-12-01T18:33:43,793 adding 'biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl' 2022-12-01T18:33:43,796 adding 'biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl' 2022-12-01T18:33:43,799 adding 'biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl' 2022-12-01T18:33:43,802 adding 'biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl' 2022-12-01T18:33:43,805 adding 'biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl' 2022-12-01T18:33:43,809 adding 'biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl' 2022-12-01T18:33:43,811 adding 'biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl' 2022-12-01T18:33:43,814 adding 'biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl' 2022-12-01T18:33:43,817 adding 'biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl' 2022-12-01T18:33:43,819 adding 'biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl' 2022-12-01T18:33:43,822 adding 'biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl' 2022-12-01T18:33:43,824 adding 'biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl' 2022-12-01T18:33:43,828 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2022-12-01T18:33:43,831 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2022-12-01T18:33:43,833 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2022-12-01T18:33:43,836 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 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'biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl' 2022-12-01T18:33:44,136 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl' 2022-12-01T18:33:44,139 adding 'biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl' 2022-12-01T18:33:44,141 adding 'biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl' 2022-12-01T18:33:44,144 adding 'biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl' 2022-12-01T18:33:44,146 adding 'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2022-12-01T18:33:44,150 adding 'biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh' 2022-12-01T18:33:44,751 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb' 2022-12-01T18:33:46,292 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro' 2022-12-01T18:33:49,204 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro' 2022-12-01T18:33:50,693 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb' 2022-12-01T18:33:50,918 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb' 2022-12-01T18:33:50,928 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb' 2022-12-01T18:33:51,002 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb' 2022-12-01T18:33:51,009 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb' 2022-12-01T18:33:51,543 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb' 2022-12-01T18:33:53,068 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb' 2022-12-01T18:33:54,643 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb' 2022-12-01T18:33:54,806 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb' 2022-12-01T18:33:55,174 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro' 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'biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml' 2022-12-01T18:33:55,213 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml' 2022-12-01T18:33:55,217 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl' 2022-12-01T18:33:55,220 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl' 2022-12-01T18:33:55,222 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl' 2022-12-01T18:33:55,225 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl' 2022-12-01T18:33:55,227 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl' 2022-12-01T18:33:55,230 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl' 2022-12-01T18:33:55,233 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl' 2022-12-01T18:33:55,236 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl' 2022-12-01T18:33:55,239 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl' 2022-12-01T18:33:55,242 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl' 2022-12-01T18:33:55,245 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl' 2022-12-01T18:33:55,248 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl' 2022-12-01T18:33:55,253 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2022-12-01T18:33:55,256 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2022-12-01T18:33:55,260 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2022-12-01T18:33:55,263 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2022-12-01T18:33:55,266 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2022-12-01T18:33:55,269 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2022-12-01T18:33:55,272 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2022-12-01T18:33:55,275 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2022-12-01T18:33:55,279 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2022-12-01T18:33:55,283 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl' 2022-12-01T18:33:55,286 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl' 2022-12-01T18:33:55,289 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl' 2022-12-01T18:33:55,294 adding 'biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl' 2022-12-01T18:33:55,297 adding 'biobb_adapters/cwl/biobb_vs/utils/box.cwl' 2022-12-01T18:33:55,300 adding 'biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl' 2022-12-01T18:33:55,303 adding 'biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl' 2022-12-01T18:33:55,307 adding 'biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl' 2022-12-01T18:33:55,312 adding 'biobb_adapters/pycompss/__init__.py' 2022-12-01T18:33:55,316 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2022-12-01T18:33:55,319 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2022-12-01T18:33:55,322 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2022-12-01T18:33:55,326 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2022-12-01T18:33:55,329 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2022-12-01T18:33:55,332 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2022-12-01T18:33:55,336 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2022-12-01T18:33:55,339 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2022-12-01T18:33:55,343 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2022-12-01T18:33:55,346 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2022-12-01T18:33:55,349 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2022-12-01T18:33:55,352 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2022-12-01T18:33:55,355 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2022-12-01T18:33:55,359 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2022-12-01T18:33:55,362 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2022-12-01T18:33:55,365 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2022-12-01T18:33:55,368 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2022-12-01T18:33:55,371 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2022-12-01T18:33:55,375 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2022-12-01T18:33:55,378 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2022-12-01T18:33:55,381 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2022-12-01T18:33:55,385 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2022-12-01T18:33:55,388 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2022-12-01T18:33:55,392 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2022-12-01T18:33:55,395 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2022-12-01T18:33:55,398 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2022-12-01T18:33:55,402 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2022-12-01T18:33:55,405 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2022-12-01T18:33:55,409 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2022-12-01T18:33:55,413 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2022-12-01T18:33:55,416 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2022-12-01T18:33:55,419 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2022-12-01T18:33:55,422 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2022-12-01T18:33:55,425 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2022-12-01T18:33:55,428 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2022-12-01T18:33:55,431 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2022-12-01T18:33:55,434 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2022-12-01T18:33:55,437 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2022-12-01T18:33:55,439 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2022-12-01T18:33:55,442 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2022-12-01T18:33:55,445 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2022-12-01T18:33:55,448 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2022-12-01T18:33:55,451 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2022-12-01T18:33:55,454 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2022-12-01T18:33:55,457 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2022-12-01T18:33:55,460 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2022-12-01T18:33:55,463 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2022-12-01T18:33:55,465 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2022-12-01T18:33:55,468 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2022-12-01T18:33:55,471 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2022-12-01T18:33:55,474 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2022-12-01T18:33:55,477 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2022-12-01T18:33:55,480 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2022-12-01T18:33:55,483 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2022-12-01T18:33:55,487 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2022-12-01T18:33:55,491 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2022-12-01T18:33:55,494 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2022-12-01T18:33:55,496 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2022-12-01T18:33:55,499 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2022-12-01T18:33:55,502 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2022-12-01T18:33:55,505 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2022-12-01T18:33:55,508 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2022-12-01T18:33:55,511 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2022-12-01T18:33:55,514 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2022-12-01T18:33:55,517 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2022-12-01T18:33:55,520 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2022-12-01T18:33:55,523 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2022-12-01T18:33:55,526 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2022-12-01T18:33:55,529 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2022-12-01T18:33:55,532 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2022-12-01T18:33:55,534 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2022-12-01T18:33:55,538 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2022-12-01T18:33:55,542 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2022-12-01T18:33:55,545 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2022-12-01T18:33:55,548 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2022-12-01T18:33:55,551 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2022-12-01T18:33:55,554 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2022-12-01T18:33:55,557 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2022-12-01T18:33:55,560 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2022-12-01T18:33:55,563 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2022-12-01T18:33:55,566 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2022-12-01T18:33:55,569 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2022-12-01T18:33:55,573 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2022-12-01T18:33:55,575 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2022-12-01T18:33:55,578 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2022-12-01T18:33:55,581 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2022-12-01T18:33:55,585 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2022-12-01T18:33:55,588 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2022-12-01T18:33:55,591 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2022-12-01T18:33:55,594 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2022-12-01T18:33:55,597 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2022-12-01T18:33:55,600 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2022-12-01T18:33:55,603 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2022-12-01T18:33:55,606 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2022-12-01T18:33:55,609 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2022-12-01T18:33:55,616 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2022-12-01T18:33:55,620 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2022-12-01T18:33:55,623 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2022-12-01T18:33:55,626 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2022-12-01T18:33:55,629 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2022-12-01T18:33:55,632 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2022-12-01T18:33:55,635 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2022-12-01T18:33:55,639 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2022-12-01T18:33:55,642 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2022-12-01T18:33:55,646 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2022-12-01T18:33:55,650 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2022-12-01T18:33:55,653 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2022-12-01T18:33:55,656 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2022-12-01T18:33:55,659 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2022-12-01T18:33:55,661 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2022-12-01T18:33:55,664 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2022-12-01T18:33:55,667 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2022-12-01T18:33:55,670 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2022-12-01T18:33:55,673 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2022-12-01T18:33:55,676 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2022-12-01T18:33:55,679 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2022-12-01T18:33:55,682 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2022-12-01T18:33:55,685 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2022-12-01T18:33:55,688 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2022-12-01T18:33:55,691 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2022-12-01T18:33:55,694 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2022-12-01T18:33:55,697 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2022-12-01T18:33:55,699 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2022-12-01T18:33:55,702 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2022-12-01T18:33:55,706 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2022-12-01T18:33:55,710 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2022-12-01T18:33:55,713 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2022-12-01T18:33:55,716 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2022-12-01T18:33:55,719 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2022-12-01T18:33:55,722 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2022-12-01T18:33:55,725 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2022-12-01T18:33:55,728 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2022-12-01T18:33:55,731 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2022-12-01T18:33:55,734 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2022-12-01T18:33:55,737 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2022-12-01T18:33:55,740 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2022-12-01T18:33:55,744 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2022-12-01T18:33:55,746 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2022-12-01T18:33:55,749 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2022-12-01T18:33:55,752 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2022-12-01T18:33:55,755 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2022-12-01T18:33:55,759 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2022-12-01T18:33:55,763 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2022-12-01T18:33:55,766 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2022-12-01T18:33:55,769 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2022-12-01T18:33:55,772 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2022-12-01T18:33:55,775 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2022-12-01T18:33:55,778 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2022-12-01T18:33:55,780 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2022-12-01T18:33:55,784 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2022-12-01T18:33:55,788 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2022-12-01T18:33:55,791 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2022-12-01T18:33:55,794 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2022-12-01T18:33:55,797 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2022-12-01T18:33:55,799 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2022-12-01T18:33:55,803 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2022-12-01T18:33:55,805 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2022-12-01T18:33:55,808 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2022-12-01T18:33:55,811 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2022-12-01T18:33:55,815 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2022-12-01T18:33:55,818 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2022-12-01T18:33:55,821 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2022-12-01T18:33:55,824 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2022-12-01T18:33:55,828 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2022-12-01T18:33:55,831 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2022-12-01T18:33:55,834 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2022-12-01T18:33:55,837 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2022-12-01T18:33:55,840 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2022-12-01T18:33:55,843 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2022-12-01T18:33:55,846 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2022-12-01T18:33:55,850 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2022-12-01T18:33:55,853 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2022-12-01T18:33:55,856 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2022-12-01T18:33:55,859 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2022-12-01T18:33:55,863 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2022-12-01T18:33:55,866 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2022-12-01T18:33:55,869 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2022-12-01T18:33:55,872 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2022-12-01T18:33:55,875 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2022-12-01T18:33:55,879 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2022-12-01T18:33:55,883 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2022-12-01T18:33:55,886 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2022-12-01T18:33:55,889 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2022-12-01T18:33:55,892 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2022-12-01T18:33:55,895 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2022-12-01T18:33:55,897 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2022-12-01T18:33:55,900 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2022-12-01T18:33:55,904 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2022-12-01T18:33:55,908 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2022-12-01T18:33:55,911 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2022-12-01T18:33:55,914 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2022-12-01T18:33:55,917 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2022-12-01T18:33:55,920 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2022-12-01T18:33:55,923 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2022-12-01T18:33:55,926 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2022-12-01T18:33:55,929 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2022-12-01T18:33:55,932 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2022-12-01T18:33:55,935 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2022-12-01T18:33:55,938 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2022-12-01T18:33:55,941 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2022-12-01T18:33:55,945 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2022-12-01T18:33:55,949 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py' 2022-12-01T18:33:55,952 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py' 2022-12-01T18:33:55,955 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py' 2022-12-01T18:33:55,958 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py' 2022-12-01T18:33:55,960 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py' 2022-12-01T18:33:55,963 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py' 2022-12-01T18:33:55,967 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py' 2022-12-01T18:33:55,970 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py' 2022-12-01T18:33:55,973 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py' 2022-12-01T18:33:55,976 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py' 2022-12-01T18:33:55,979 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py' 2022-12-01T18:33:55,982 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py' 2022-12-01T18:33:55,986 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2022-12-01T18:33:55,991 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2022-12-01T18:33:55,994 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2022-12-01T18:33:55,997 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2022-12-01T18:33:56,000 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2022-12-01T18:33:56,003 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2022-12-01T18:33:56,006 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2022-12-01T18:33:56,008 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2022-12-01T18:33:56,011 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2022-12-01T18:33:56,014 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2022-12-01T18:33:56,017 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2022-12-01T18:33:56,020 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2022-12-01T18:33:56,023 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2022-12-01T18:33:56,026 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2022-12-01T18:33:56,029 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2022-12-01T18:33:56,032 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2022-12-01T18:33:56,035 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2022-12-01T18:33:56,038 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2022-12-01T18:33:56,041 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2022-12-01T18:33:56,044 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2022-12-01T18:33:56,047 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2022-12-01T18:33:56,050 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2022-12-01T18:33:56,053 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2022-12-01T18:33:56,056 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2022-12-01T18:33:56,059 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2022-12-01T18:33:56,062 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2022-12-01T18:33:56,065 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2022-12-01T18:33:56,068 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2022-12-01T18:33:56,072 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2022-12-01T18:33:56,076 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2022-12-01T18:33:56,079 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2022-12-01T18:33:56,082 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2022-12-01T18:33:56,085 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2022-12-01T18:33:56,088 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2022-12-01T18:33:56,092 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2022-12-01T18:33:56,095 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2022-12-01T18:33:56,098 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2022-12-01T18:33:56,101 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2022-12-01T18:33:56,104 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2022-12-01T18:33:56,108 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2022-12-01T18:33:56,111 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2022-12-01T18:33:56,114 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2022-12-01T18:33:56,119 adding 'biobb_adapters-3.8.0.dist-info/METADATA' 2022-12-01T18:33:56,122 adding 'biobb_adapters-3.8.0.dist-info/WHEEL' 2022-12-01T18:33:56,124 adding 'biobb_adapters-3.8.0.dist-info/top_level.txt' 2022-12-01T18:33:56,157 adding 'biobb_adapters-3.8.0.dist-info/RECORD' 2022-12-01T18:33:56,485 removing build/bdist.linux-armv7l/wheel 2022-12-01T18:33:57,201 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2022-12-01T18:33:58,389 Created wheel for biobb-adapters: filename=biobb_adapters-3.8.0-py3-none-any.whl size=40219085 sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 2022-12-01T18:33:58,391 Stored in directory: /tmp/pip-ephem-wheel-cache-5hq13ugh/wheels/17/59/ed/91c416a16bf1b5d70bd7afa2ed35d8707aaf9d2e52f59d8468 2022-12-01T18:33:58,515 Successfully built biobb-adapters 2022-12-01T18:34:01,298 Removed build tracker: '/tmp/pip-build-tracker-visfohdc'