2022-12-01T23:46:43,249 Created temporary directory: /tmp/pip-ephem-wheel-cache-5wzio0n0 2022-12-01T23:46:43,253 Created temporary directory: /tmp/pip-build-tracker-a4a0d3hc 2022-12-01T23:46:43,254 Initialized build tracking at /tmp/pip-build-tracker-a4a0d3hc 2022-12-01T23:46:43,254 Created build tracker: /tmp/pip-build-tracker-a4a0d3hc 2022-12-01T23:46:43,254 Entered build tracker: /tmp/pip-build-tracker-a4a0d3hc 2022-12-01T23:46:43,256 Created temporary directory: /tmp/pip-wheel-1tw3xbbh 2022-12-01T23:46:43,263 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-01T23:46:43,269 Created temporary directory: /tmp/pip-ephem-wheel-cache-3l3m1ihe 2022-12-01T23:46:43,320 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-01T23:46:43,326 2 location(s) to search for versions of pyhmmer: 2022-12-01T23:46:43,326 * https://pypi.org/simple/pyhmmer/ 2022-12-01T23:46:43,326 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-01T23:46:43,327 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-01T23:46:43,328 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-01T23:46:43,332 Found index url https://pypi.org/simple 2022-12-01T23:46:43,688 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-01T23:46:43,915 Skipping link: No binaries permitted for pyhmmer: 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https://pypi.org/simple/pyhmmer/) 2022-12-01T23:46:43,921 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-01T23:46:43,921 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2022-12-01T23:46:43,922 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,923 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,926 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,927 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,927 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-01T23:46:43,934 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-01T23:46:44,082 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,082 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,083 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,102 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,103 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,104 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-01T23:46:44,105 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,105 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,106 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,108 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,109 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,109 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,110 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,110 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,111 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-01T23:46:44,112 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,113 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,113 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,153 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,154 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,154 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-01T23:46:44,157 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,158 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,158 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,180 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,180 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,181 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,183 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,183 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,184 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,184 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,185 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,185 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-01T23:46:44,186 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2022-12-01T23:46:44,188 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-01T23:46:44,188 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-01T23:46:44,191 Found index url https://www.piwheels.org/simple 2022-12-01T23:46:44,416 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-01T23:46:44,417 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-01T23:46:44,418 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-01T23:46:44,464 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-01T23:46:44,494 Collecting pyhmmer==0.7.0rc2 2022-12-01T23:46:44,498 Created temporary directory: /tmp/pip-unpack-vy6y0svc 2022-12-01T23:46:45,716 Downloading pyhmmer-0.7.0rc2.tar.gz (11.0 MB) 2022-12-01T23:46:55,039 Added pyhmmer==0.7.0rc2 from https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz to build tracker '/tmp/pip-build-tracker-a4a0d3hc' 2022-12-01T23:46:55,049 Created temporary directory: /tmp/pip-build-env-0s25n6ce 2022-12-01T23:46:55,061 Installing build dependencies: started 2022-12-01T23:46:55,063 Running command pip subprocess to install build dependencies 2022-12-01T23:46:57,833 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-01T23:46:58,834 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-01T23:46:58,887 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-01T23:47:02,740 Collecting setuptools>=46.4 2022-12-01T23:47:03,027 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-01T23:47:06,163 Collecting cython~=0.29.16 2022-12-01T23:47:06,667 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-01T23:47:13,717 Installing collected packages: setuptools, cython 2022-12-01T23:47:23,631 Creating /tmp/pip-build-env-0s25n6ce/overlay/bin 2022-12-01T23:47:23,636 changing mode of /tmp/pip-build-env-0s25n6ce/overlay/bin/cygdb to 755 2022-12-01T23:47:23,641 changing mode of /tmp/pip-build-env-0s25n6ce/overlay/bin/cython to 755 2022-12-01T23:47:23,646 changing mode of /tmp/pip-build-env-0s25n6ce/overlay/bin/cythonize to 755 2022-12-01T23:47:23,693 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-01T23:47:23,731 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-01T23:47:23,731 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-01T23:47:24,251 Installing build dependencies: finished with status 'done' 2022-12-01T23:47:24,262 Getting requirements to build wheel: started 2022-12-01T23:47:24,264 Running command Getting requirements to build wheel 2022-12-01T23:47:27,006 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-01T23:47:27,225 Getting requirements to build wheel: finished with status 'done' 2022-12-01T23:47:27,261 Installing backend dependencies: started 2022-12-01T23:47:27,263 Running command pip subprocess to install backend dependencies 2022-12-01T23:47:30,054 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-01T23:47:31,050 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-01T23:47:31,103 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-01T23:47:31,964 Collecting wheel 2022-12-01T23:47:31,999 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-01T23:47:38,106 Installing collected packages: wheel 2022-12-01T23:47:38,391 Creating /tmp/pip-build-env-0s25n6ce/normal/bin 2022-12-01T23:47:38,397 changing mode of /tmp/pip-build-env-0s25n6ce/normal/bin/wheel to 755 2022-12-01T23:47:38,424 Successfully installed wheel-0.38.4 2022-12-01T23:47:38,463 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-01T23:47:38,463 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-01T23:47:38,842 Installing backend dependencies: finished with status 'done' 2022-12-01T23:47:38,848 Created temporary directory: /tmp/pip-modern-metadata-cr7w61ju 2022-12-01T23:47:38,854 Preparing metadata (pyproject.toml): started 2022-12-01T23:47:38,856 Running command Preparing metadata (pyproject.toml) 2022-12-01T23:47:41,588 running dist_info 2022-12-01T23:47:41,618 creating /tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info 2022-12-01T23:47:41,628 writing /tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/PKG-INFO 2022-12-01T23:47:41,634 writing dependency_links to /tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/dependency_links.txt 2022-12-01T23:47:41,639 writing requirements to /tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/requires.txt 2022-12-01T23:47:41,641 writing top-level names to /tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/top_level.txt 2022-12-01T23:47:41,643 writing manifest file '/tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/SOURCES.txt' 2022-12-01T23:47:41,749 reading manifest file '/tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/SOURCES.txt' 2022-12-01T23:47:41,756 reading manifest template 'MANIFEST.in' 2022-12-01T23:47:42,964 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-01T23:47:42,964 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-01T23:47:42,968 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-01T23:47:42,972 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-01T23:47:42,975 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-01T23:47:42,979 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-01T23:47:42,982 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-01T23:47:42,985 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-01T23:47:42,989 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-01T23:47:42,992 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-01T23:47:42,995 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-01T23:47:42,999 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-01T23:47:43,002 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-01T23:47:43,006 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-01T23:47:43,009 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-01T23:47:43,009 adding license file 'COPYING' 2022-12-01T23:47:43,082 writing manifest file '/tmp/pip-modern-metadata-cr7w61ju/pyhmmer.egg-info/SOURCES.txt' 2022-12-01T23:47:43,086 creating '/tmp/pip-modern-metadata-cr7w61ju/pyhmmer-0.7.0rc2.dist-info' 2022-12-01T23:47:43,476 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-01T23:47:43,494 Source in /tmp/pip-wheel-1tw3xbbh/pyhmmer_4722174395b34e8280dbff0a90a5e0eb has version 0.7.0rc2, which satisfies requirement pyhmmer==0.7.0rc2 from https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz 2022-12-01T23:47:43,496 Removed pyhmmer==0.7.0rc2 from https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz from build tracker '/tmp/pip-build-tracker-a4a0d3hc' 2022-12-01T23:47:43,512 Created temporary directory: /tmp/pip-unpack-j4o7n2cw 2022-12-01T23:47:43,513 Building wheels for collected packages: pyhmmer 2022-12-01T23:47:43,522 Created temporary directory: /tmp/pip-wheel-vrbs94x8 2022-12-01T23:47:43,523 Destination directory: /tmp/pip-wheel-vrbs94x8 2022-12-01T23:47:43,528 Building wheel for pyhmmer (pyproject.toml): started 2022-12-01T23:47:43,530 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-01T23:47:46,219 running bdist_wheel 2022-12-01T23:47:46,251 running build 2022-12-01T23:47:46,251 running build_py 2022-12-01T23:47:46,270 creating build 2022-12-01T23:47:46,270 creating build/lib.linux-armv7l-cpython-37 2022-12-01T23:47:46,272 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:46,274 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:46,281 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:46,285 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:46,290 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,292 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,296 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,299 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,303 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,307 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:46,315 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,316 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,320 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,325 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,329 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,333 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,336 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,341 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,344 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,348 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,352 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,357 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,360 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,364 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-01T23:47:46,370 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,372 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,376 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,379 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,383 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,386 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,390 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,394 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,398 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,403 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,407 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,411 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,414 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,418 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-01T23:47:46,423 running egg_info 2022-12-01T23:47:46,458 writing pyhmmer.egg-info/PKG-INFO 2022-12-01T23:47:46,464 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-01T23:47:46,469 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-01T23:47:46,471 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-01T23:47:46,507 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-01T23:47:46,551 reading manifest template 'MANIFEST.in' 2022-12-01T23:47:47,729 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-01T23:47:47,729 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-01T23:47:47,736 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-01T23:47:47,740 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-01T23:47:47,745 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-01T23:47:47,750 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-01T23:47:47,755 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-01T23:47:47,759 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-01T23:47:47,764 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-01T23:47:47,769 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-01T23:47:47,774 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-01T23:47:47,778 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-01T23:47:47,783 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-01T23:47:47,788 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-01T23:47:47,792 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-01T23:47:47,793 adding license file 'COPYING' 2022-12-01T23:47:47,891 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-01T23:47:47,919 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,920 !! 2022-12-01T23:47:47,921 ############################ 2022-12-01T23:47:47,921 # Package would be ignored # 2022-12-01T23:47:47,921 ############################ 2022-12-01T23:47:47,922 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-01T23:47:47,922 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,923 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-01T23:47:47,923 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,923 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,924 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-01T23:47:47,924 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,924 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,925 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,925 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,926 documentation page. 2022-12-01T23:47:47,926 !! 2022-12-01T23:47:47,927 check.warn(importable) 2022-12-01T23:47:47,927 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,928 !! 2022-12-01T23:47:47,929 ############################ 2022-12-01T23:47:47,929 # Package would be ignored # 2022-12-01T23:47:47,929 ############################ 2022-12-01T23:47:47,929 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-01T23:47:47,930 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,930 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-01T23:47:47,931 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,931 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,931 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-01T23:47:47,932 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,932 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,932 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,933 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,933 documentation page. 2022-12-01T23:47:47,934 !! 2022-12-01T23:47:47,934 check.warn(importable) 2022-12-01T23:47:47,935 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,935 !! 2022-12-01T23:47:47,936 ############################ 2022-12-01T23:47:47,936 # Package would be ignored # 2022-12-01T23:47:47,936 ############################ 2022-12-01T23:47:47,937 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-01T23:47:47,937 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,938 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-01T23:47:47,938 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,938 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,939 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-01T23:47:47,939 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,939 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,940 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,940 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,940 documentation page. 2022-12-01T23:47:47,941 !! 2022-12-01T23:47:47,942 check.warn(importable) 2022-12-01T23:47:47,942 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,942 !! 2022-12-01T23:47:47,943 ############################ 2022-12-01T23:47:47,944 # Package would be ignored # 2022-12-01T23:47:47,944 ############################ 2022-12-01T23:47:47,944 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-01T23:47:47,944 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,945 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-01T23:47:47,945 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,945 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,946 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-01T23:47:47,946 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,947 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,947 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,947 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,948 documentation page. 2022-12-01T23:47:47,949 !! 2022-12-01T23:47:47,949 check.warn(importable) 2022-12-01T23:47:47,949 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,950 !! 2022-12-01T23:47:47,951 ############################ 2022-12-01T23:47:47,951 # Package would be ignored # 2022-12-01T23:47:47,951 ############################ 2022-12-01T23:47:47,951 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-01T23:47:47,952 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,952 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-01T23:47:47,953 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,953 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,953 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-01T23:47:47,954 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,954 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,954 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,955 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,955 documentation page. 2022-12-01T23:47:47,956 !! 2022-12-01T23:47:47,956 check.warn(importable) 2022-12-01T23:47:47,957 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,957 !! 2022-12-01T23:47:47,958 ############################ 2022-12-01T23:47:47,958 # Package would be ignored # 2022-12-01T23:47:47,959 ############################ 2022-12-01T23:47:47,959 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-01T23:47:47,959 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,960 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-01T23:47:47,960 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,960 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,961 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-01T23:47:47,961 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,962 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,962 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,962 documentation page. 2022-12-01T23:47:47,963 !! 2022-12-01T23:47:47,964 check.warn(importable) 2022-12-01T23:47:47,964 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,964 !! 2022-12-01T23:47:47,965 ############################ 2022-12-01T23:47:47,965 # Package would be ignored # 2022-12-01T23:47:47,966 ############################ 2022-12-01T23:47:47,966 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-01T23:47:47,966 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,967 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-01T23:47:47,967 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,967 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,968 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-01T23:47:47,968 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,969 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,969 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,969 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,970 documentation page. 2022-12-01T23:47:47,971 !! 2022-12-01T23:47:47,971 check.warn(importable) 2022-12-01T23:47:47,971 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-01T23:47:47,972 !! 2022-12-01T23:47:47,973 ############################ 2022-12-01T23:47:47,973 # Package would be ignored # 2022-12-01T23:47:47,973 ############################ 2022-12-01T23:47:47,973 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-01T23:47:47,974 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:47:47,974 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-01T23:47:47,975 because it may contain data files, but this behavior is likely to change 2022-12-01T23:47:47,975 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:47:47,976 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-01T23:47:47,976 the `packages` configuration field or the proper discovery methods 2022-12-01T23:47:47,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:47:47,976 instead of `find_packages(...)`/`find:`). 2022-12-01T23:47:47,977 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:47:47,977 documentation page. 2022-12-01T23:47:47,978 !! 2022-12-01T23:47:47,979 check.warn(importable) 2022-12-01T23:47:47,994 copying pyhmmer/capacity.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:47,998 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,003 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,008 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,013 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,019 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,024 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,040 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,044 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,049 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,053 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,058 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,065 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,085 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-01T23:47:48,089 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-01T23:47:48,091 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-01T23:47:48,095 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-01T23:47:48,100 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,102 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,106 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,110 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,114 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,118 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,122 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,127 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-01T23:47:48,131 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-01T23:47:48,134 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-01T23:47:48,136 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-01T23:47:48,140 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-01T23:47:48,142 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-01T23:47:48,146 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-01T23:47:48,148 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-01T23:47:48,154 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-01T23:47:48,162 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-01T23:47:48,169 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-01T23:47:48,295 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,297 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,306 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,311 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,315 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,321 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,328 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,341 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,347 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,351 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,359 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,367 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,377 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,383 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,387 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,394 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,402 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,616 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,676 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,680 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,782 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-01T23:47:48,930 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,931 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,947 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,956 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,968 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,979 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:48,995 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:49,016 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-01T23:47:49,225 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-01T23:47:49,226 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-01T23:47:49,234 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-01T23:47:49,246 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-01T23:47:49,255 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-01T23:47:49,581 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-01T23:47:49,583 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-01T23:47:49,587 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-01T23:47:49,593 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-01T23:47:49,597 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-01T23:47:49,599 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-01T23:47:49,604 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-01T23:47:49,609 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-01T23:47:49,614 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-01T23:47:49,620 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,621 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,678 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,695 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,899 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,908 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,912 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,917 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-01T23:47:49,922 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,923 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,928 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,932 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,937 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,942 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,946 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,950 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,956 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,961 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-01T23:47:49,975 running build_clib 2022-12-01T23:47:49,992 creating build/temp.linux-armv7l-cpython-37 2022-12-01T23:47:49,993 generating "divsufsort.h" for divsufsort library 2022-12-01T23:47:49,994 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-01T23:47:49,998 generating "esl_config.h" for easel library 2022-12-01T23:48:00,934 generating "p7_config.h" for hmmer library 2022-12-01T23:48:13,206 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-01T23:48:13,233 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-01T23:48:13,258 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-01T23:48:13,301 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-01T23:48:13,302 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-01T23:48:13,303 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-01T23:48:13,304 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-01T23:48:13,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-01T23:48:22,325 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-01T23:48:22,465 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_scorematrix.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_random.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_mpi.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_cpu.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_neon.c, vendor/easel/esl_msafile.c, vendor/easel/esl_recorder.c, vendor/easel/esl_distance.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_histogram.c, vendor/easel/esl_alloc.c, vendor/easel/esl_getopts.c, vendor/easel/interface_gsl.c, vendor/easel/esl_stack.c, vendor/easel/esl_ssi.c, vendor/easel/esl_sse.c, vendor/easel/esl_avx512.c, vendor/easel/esl_weibull.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_avx.c, vendor/easel/esl_huffman.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_vmx.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sq.c, vendor/easel/esl_hmm.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_mem.c, vendor/easel/esl_wuss.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_gev.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_regexp.c, vendor/easel/interface_lapack.c, vendor/easel/easel.c, vendor/easel/esl_stats.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_arr3.c, vendor/easel/esl_cluster.c, vendor/easel/esl_msa.c, vendor/easel/esl_swat.c, vendor/easel/esl_heap.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_arr2.c, vendor/easel/esl_exponential.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_normal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_tree.c, vendor/easel/esl_red_black.c, vendor/easel/esl_json.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_gencode.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_paml.c, vendor/easel/esl_threads.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_graph.c, vendor/easel/esl_sqio.c, vendor/easel/esl_composition.c, vendor/easel/esl_varint.c, vendor/easel/esl_rand64.c, vendor/easel/esl_stopwatch.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-01T23:48:22,473 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-01T23:48:22,475 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-01T23:48:22,476 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-01T23:48:22,477 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-01T23:48:22,478 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-01T23:48:22,479 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-01T23:48:22,479 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-01T23:48:22,480 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-01T23:48:22,481 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-01T23:48:22,483 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-01T23:48:22,485 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-01T23:48:22,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-01T23:48:22,720 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-01T23:48:22,722 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-01T23:48:24,091 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-01T23:48:24,093 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-01T23:48:24,333 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-01T23:48:24,334 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:24,334 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-01T23:48:24,335 ^ 2022-12-01T23:48:24,335 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-01T23:48:24,336 char *p; 2022-12-01T23:48:24,336 ^ 2022-12-01T23:48:24,481 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-01T23:48:24,482 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:24,483 if (rank > h->n) 2022-12-01T23:48:24,483 ^ 2022-12-01T23:48:25,156 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-01T23:48:25,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-01T23:48:26,510 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-01T23:48:26,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-01T23:48:26,603 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-01T23:48:26,605 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-01T23:48:27,055 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-01T23:48:27,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-01T23:48:27,726 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-01T23:48:27,728 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-01T23:48:27,763 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-01T23:48:27,765 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-01T23:48:28,213 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-01T23:48:28,215 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-01T23:48:28,616 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-01T23:48:28,617 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:28,617 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-01T23:48:28,618 ^~ 2022-12-01T23:48:28,902 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-01T23:48:28,904 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-01T23:48:29,249 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-01T23:48:29,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-01T23:48:29,380 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-01T23:48:29,382 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-01T23:48:29,538 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-01T23:48:29,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-01T23:48:30,304 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-01T23:48:30,306 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-01T23:48:30,715 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-01T23:48:30,716 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-01T23:48:30,717 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-01T23:48:30,717 for (i = 0; i < a; i++) 2022-12-01T23:48:30,718 ^ 2022-12-01T23:48:30,719 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-01T23:48:31,169 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-01T23:48:31,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-01T23:48:31,527 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-01T23:48:31,529 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:31,530 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-01T23:48:31,531 ^~ 2022-12-01T23:48:32,282 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-01T23:48:32,284 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-01T23:48:32,302 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-01T23:48:32,304 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-01T23:48:32,469 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-01T23:48:32,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-01T23:48:33,630 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-01T23:48:33,632 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-01T23:48:34,016 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-01T23:48:34,017 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,018 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-01T23:48:34,018 ^~ 2022-12-01T23:48:34,041 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-01T23:48:34,042 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,042 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-01T23:48:34,042 ^ 2022-12-01T23:48:34,049 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-01T23:48:34,050 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,051 if (n > ns->plen) ns->plen = n; 2022-12-01T23:48:34,051 ^ 2022-12-01T23:48:34,054 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,054 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-01T23:48:34,055 ^ 2022-12-01T23:48:34,056 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-01T23:48:34,056 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,057 if (n > ns->slen) ns->slen = n; 2022-12-01T23:48:34,057 ^ 2022-12-01T23:48:34,060 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,060 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-01T23:48:34,061 ^ 2022-12-01T23:48:34,071 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-01T23:48:34,071 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,072 for (i = 0; i < ns->nprimary; i++) 2022-12-01T23:48:34,072 ^ 2022-12-01T23:48:34,074 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,074 for (i = 0; i < ns->nprimary; i++) 2022-12-01T23:48:34,075 ^ 2022-12-01T23:48:34,077 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,077 for (i = 0; i < ns->nsecondary; i++) 2022-12-01T23:48:34,078 ^ 2022-12-01T23:48:34,079 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,080 for (i = 0; i < ns->nsecondary; i++) 2022-12-01T23:48:34,080 ^ 2022-12-01T23:48:34,087 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-01T23:48:34,088 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,088 for (i = 0; i < ns->nprimary; i++) 2022-12-01T23:48:34,089 ^ 2022-12-01T23:48:34,090 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,090 for (i = 0; i < ns->nsecondary; i++) 2022-12-01T23:48:34,090 ^ 2022-12-01T23:48:34,100 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-01T23:48:34,101 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,101 for (i = 0; i < ns->nprimary; i++) { 2022-12-01T23:48:34,102 ^ 2022-12-01T23:48:34,103 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,103 for (i = 0; i < ns->nsecondary; i++) 2022-12-01T23:48:34,104 ^ 2022-12-01T23:48:34,105 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,105 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-01T23:48:34,105 ^ 2022-12-01T23:48:34,106 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,106 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-01T23:48:34,107 ^ 2022-12-01T23:48:34,107 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:34,108 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-01T23:48:34,108 ^ 2022-12-01T23:48:34,356 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-01T23:48:34,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-01T23:48:35,214 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-01T23:48:35,215 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-01T23:48:35,773 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-01T23:48:35,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-01T23:48:37,031 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-01T23:48:37,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-01T23:48:37,139 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-01T23:48:37,141 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-01T23:48:37,594 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-01T23:48:37,595 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:37,595 if (alphatype != dd->abc_r->type) 2022-12-01T23:48:37,596 ^~ 2022-12-01T23:48:37,617 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-01T23:48:37,618 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:48:37,618 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-01T23:48:37,619 ^ 2022-12-01T23:48:37,619 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:37,620 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-01T23:48:37,621 ^ 2022-12-01T23:48:37,621 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:37,622 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-01T23:48:37,623 ^ 2022-12-01T23:48:37,623 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:37,624 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-01T23:48:37,624 ^ 2022-12-01T23:48:37,631 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:37,633 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-01T23:48:37,633 ^~ 2022-12-01T23:48:37,634 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:37,634 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-01T23:48:37,635 ^~ 2022-12-01T23:48:37,636 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:37,637 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-01T23:48:37,648 ^~ 2022-12-01T23:48:37,649 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:37,650 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-01T23:48:37,650 ^~ 2022-12-01T23:48:37,706 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-01T23:48:37,707 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-01T23:48:37,708 } 2022-12-01T23:48:37,708 ^ 2022-12-01T23:48:37,722 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-01T23:48:37,722 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-01T23:48:37,723 } 2022-12-01T23:48:37,723 ^ 2022-12-01T23:48:38,003 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-01T23:48:38,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-01T23:48:38,154 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-01T23:48:38,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-01T23:48:38,235 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-01T23:48:38,236 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-01T23:48:38,393 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-01T23:48:38,395 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-01T23:48:38,561 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-01T23:48:38,563 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-01T23:48:38,672 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-01T23:48:38,674 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-01T23:48:39,260 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-01T23:48:39,261 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:39,262 return status; 2022-12-01T23:48:39,262 ^~~~~~ 2022-12-01T23:48:39,878 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-01T23:48:39,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-01T23:48:40,922 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-01T23:48:40,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-01T23:48:41,287 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-01T23:48:41,288 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,288 for (h = 0; h < kh->hashsize; h++) 2022-12-01T23:48:41,289 ^ 2022-12-01T23:48:41,292 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-01T23:48:41,293 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,294 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-01T23:48:41,294 ^ 2022-12-01T23:48:41,297 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-01T23:48:41,298 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,299 for (h = 0; h < kh->hashsize; h++) 2022-12-01T23:48:41,299 ^ 2022-12-01T23:48:41,306 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-01T23:48:41,307 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,307 if (kh->nkeys > 3*kh->hashsize) 2022-12-01T23:48:41,308 ^ 2022-12-01T23:48:41,314 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-01T23:48:41,315 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,315 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-01T23:48:41,316 ^ 2022-12-01T23:48:41,322 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-01T23:48:41,323 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:41,324 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-01T23:48:41,324 ^ 2022-12-01T23:48:42,002 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-01T23:48:42,004 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-01T23:48:42,471 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-01T23:48:42,471 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-01T23:48:42,472 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:42,472 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:48:42,473 ^ 2022-12-01T23:48:42,473 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:48:42,474 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-01T23:48:42,474 ^~~~~~~ 2022-12-01T23:48:42,474 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:48:42,475 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:48:42,475 ^~~ 2022-12-01T23:48:42,476 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:48:42,476 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-01T23:48:42,477 ^~~~~~~ 2022-12-01T23:48:42,477 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:42,478 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:48:42,480 ^ 2022-12-01T23:48:42,481 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:48:42,481 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-01T23:48:42,481 ^~~~~~~ 2022-12-01T23:48:42,482 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:48:42,482 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:48:42,483 ^~~ 2022-12-01T23:48:42,483 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:48:42,484 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-01T23:48:42,485 ^~~~~~~ 2022-12-01T23:48:42,486 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-01T23:48:42,486 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-01T23:48:42,506 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-01T23:48:42,510 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-01T23:48:42,898 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-01T23:48:42,900 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-01T23:48:43,030 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-01T23:48:43,031 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-01T23:48:43,032 for (pos = 0; pos < sq->n; pos++) 2022-12-01T23:48:43,033 ^ 2022-12-01T23:48:43,034 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-01T23:48:43,035 for (pos = 1; pos <= sq->n; pos++) 2022-12-01T23:48:43,035 ^~ 2022-12-01T23:48:43,100 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-01T23:48:43,102 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-01T23:48:43,165 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-01T23:48:43,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-01T23:48:44,893 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-01T23:48:44,894 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:44,894 int flags; 2022-12-01T23:48:44,895 ^~~~~ 2022-12-01T23:48:45,242 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-01T23:48:45,244 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-01T23:48:46,596 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-01T23:48:46,598 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-01T23:48:46,801 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-01T23:48:46,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-01T23:48:47,332 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-01T23:48:47,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-01T23:48:47,387 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-01T23:48:47,389 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-01T23:48:47,547 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-01T23:48:47,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-01T23:48:47,703 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-01T23:48:47,705 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:48:47,706 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-01T23:48:47,706 ^ 2022-12-01T23:48:47,978 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-01T23:48:47,979 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-01T23:48:48,072 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-01T23:48:48,073 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:48:48,073 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-01T23:48:48,074 ^~~~~~~~~~~~~~~~ 2022-12-01T23:48:48,510 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-01T23:48:48,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-01T23:48:48,544 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-01T23:48:48,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-01T23:48:48,964 In file included from vendor/easel/esl_hmm.c:9: 2022-12-01T23:48:48,965 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-01T23:48:48,966 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:48:48,966 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-01T23:48:48,967 ^ 2022-12-01T23:48:48,967 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-01T23:48:48,968 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-01T23:48:48,968 ^~~~~~~ 2022-12-01T23:48:48,969 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:48:48,970 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-01T23:48:48,970 ^~~ 2022-12-01T23:48:48,971 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-01T23:48:48,971 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-01T23:48:48,972 ^~~~~~~ 2022-12-01T23:48:50,848 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-01T23:48:50,850 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-01T23:48:50,966 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-01T23:48:50,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-01T23:48:51,404 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-01T23:48:51,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-01T23:48:51,611 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-01T23:48:51,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-01T23:48:52,238 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-01T23:48:52,239 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-01T23:48:52,523 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-01T23:48:52,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-01T23:48:52,796 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-01T23:48:52,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-01T23:48:53,615 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-01T23:48:53,615 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:53,616 if (opt_fx) *opt_fx = fx; 2022-12-01T23:48:53,616 ~~~~~~~~^~~~ 2022-12-01T23:48:53,617 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:53,617 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-01T23:48:53,618 ~~^~~ 2022-12-01T23:48:53,618 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-01T23:48:53,619 double ax,bx,cx; 2022-12-01T23:48:53,619 ^~ 2022-12-01T23:48:53,620 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:48:53,620 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-01T23:48:53,621 ~^~~~~~~~~~~~~ 2022-12-01T23:48:53,621 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-01T23:48:53,622 double ax,bx,cx; 2022-12-01T23:48:53,622 ^~ 2022-12-01T23:48:54,518 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-01T23:48:54,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-01T23:48:54,777 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-01T23:48:54,780 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-01T23:48:54,802 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-01T23:48:54,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-01T23:48:55,123 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-01T23:48:55,125 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-01T23:48:55,788 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-01T23:48:55,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-01T23:48:56,637 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-01T23:48:56,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-01T23:48:56,700 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-01T23:48:56,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-01T23:48:58,328 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-01T23:48:58,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-01T23:48:59,095 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-01T23:48:59,097 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-01T23:48:59,857 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-01T23:48:59,859 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-01T23:48:59,977 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-01T23:48:59,979 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-01T23:49:00,287 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-01T23:49:00,287 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,288 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-01T23:49:00,289 ^~ 2022-12-01T23:49:00,472 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-01T23:49:00,474 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-01T23:49:00,865 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-01T23:49:00,866 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,867 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-01T23:49:00,867 ^~ 2022-12-01T23:49:00,868 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,868 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-01T23:49:00,869 ^~ 2022-12-01T23:49:00,870 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,870 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-01T23:49:00,871 ^~ 2022-12-01T23:49:00,893 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-01T23:49:00,893 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,894 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,894 ^~ 2022-12-01T23:49:00,895 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-01T23:49:00,896 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,897 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,897 ^~ 2022-12-01T23:49:00,898 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-01T23:49:00,898 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,899 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,899 ^~ 2022-12-01T23:49:00,904 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-01T23:49:00,904 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,905 if (status != eslOK || nres != W) { 2022-12-01T23:49:00,905 ^~ 2022-12-01T23:49:00,906 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,907 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,907 ^~ 2022-12-01T23:49:00,928 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-01T23:49:00,929 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,929 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-01T23:49:00,929 ^ 2022-12-01T23:49:00,935 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,935 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-01T23:49:00,936 ^~ 2022-12-01T23:49:00,937 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-01T23:49:00,938 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,938 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-01T23:49:00,939 ^ 2022-12-01T23:49:00,939 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,940 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-01T23:49:00,940 ^~ 2022-12-01T23:49:00,941 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,941 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-01T23:49:00,941 ^ 2022-12-01T23:49:00,942 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,942 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-01T23:49:00,942 ^ 2022-12-01T23:49:00,943 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,943 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-01T23:49:00,944 ^ 2022-12-01T23:49:00,944 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,945 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-01T23:49:00,945 ^ 2022-12-01T23:49:00,946 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,946 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-01T23:49:00,946 ^ 2022-12-01T23:49:00,947 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,947 if (inx < volume->end_seq) break; 2022-12-01T23:49:00,948 ^ 2022-12-01T23:49:00,949 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,949 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-01T23:49:00,950 ^~ 2022-12-01T23:49:00,950 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,951 if (ncbi->index_start == -1 || inx > end) { 2022-12-01T23:49:00,951 ^~ 2022-12-01T23:49:00,952 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,952 if (ncbi->index_start == -1 || inx > end) { 2022-12-01T23:49:00,953 ^ 2022-12-01T23:49:00,954 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,954 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-01T23:49:00,955 ^~ 2022-12-01T23:49:00,955 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,955 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-01T23:49:00,956 ^~ 2022-12-01T23:49:00,956 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,957 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-01T23:49:00,957 ^~ 2022-12-01T23:49:00,958 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-01T23:49:00,958 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,959 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,959 ^~ 2022-12-01T23:49:00,960 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,960 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-01T23:49:00,960 ^~ 2022-12-01T23:49:00,961 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,961 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-01T23:49:00,962 ^~ 2022-12-01T23:49:00,962 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-01T23:49:00,963 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,963 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,964 ^~ 2022-12-01T23:49:00,965 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,965 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-01T23:49:00,966 ^~ 2022-12-01T23:49:00,973 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,974 if (ncbi->seq_apos - sq->doff < size) { 2022-12-01T23:49:00,974 ^ 2022-12-01T23:49:00,978 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-01T23:49:00,979 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,979 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,980 ^~ 2022-12-01T23:49:00,984 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:00,984 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-01T23:49:00,984 ^~ 2022-12-01T23:49:00,995 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-01T23:49:00,996 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:00,996 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-01T23:49:00,997 ^~ 2022-12-01T23:49:01,003 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:01,004 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-01T23:49:01,004 ^~ 2022-12-01T23:49:01,017 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-01T23:49:01,018 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,018 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-01T23:49:01,019 ^ 2022-12-01T23:49:01,020 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,020 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-01T23:49:01,020 ^ 2022-12-01T23:49:01,021 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,021 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-01T23:49:01,022 ^~ 2022-12-01T23:49:01,023 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-01T23:49:01,024 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,025 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-01T23:49:01,025 ^ 2022-12-01T23:49:01,026 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,026 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-01T23:49:01,027 ^ 2022-12-01T23:49:01,028 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:01,028 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-01T23:49:01,029 ^~ 2022-12-01T23:49:01,035 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-01T23:49:01,035 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:01,036 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-01T23:49:01,036 ^~ 2022-12-01T23:49:01,919 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-01T23:49:01,921 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-01T23:49:02,684 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-01T23:49:02,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-01T23:49:03,094 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-01T23:49:03,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-01T23:49:03,935 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-01T23:49:03,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-01T23:49:05,518 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-01T23:49:05,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-01T23:49:06,123 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-01T23:49:06,126 creating build/temp.linux-armv7l-cpython-37/build 2022-12-01T23:49:06,128 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-01T23:49:06,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-01T23:49:06,474 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-01T23:49:06,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-01T23:49:06,687 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-01T23:49:06,688 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:06,689 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-01T23:49:06,689 ^~ 2022-12-01T23:49:07,058 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-01T23:49:07,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-01T23:49:07,788 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-01T23:49:07,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-01T23:49:08,065 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-01T23:49:08,066 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-01T23:49:08,067 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-01T23:49:08,067 ~~~~^~~~~~~ 2022-12-01T23:49:08,276 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-01T23:49:08,279 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-01T23:49:08,418 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-01T23:49:08,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-01T23:49:08,597 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-01T23:49:08,599 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-01T23:49:09,523 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-01T23:49:09,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-01T23:49:09,857 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-01T23:49:09,858 static double stopwatch_getRealTime(void); 2022-12-01T23:49:09,859 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:11,906 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-01T23:49:11,907 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-01T23:49:14,500 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-01T23:49:15,002 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-01T23:49:15,012 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-01T23:49:15,013 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-01T23:49:15,015 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-01T23:49:15,016 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-01T23:49:15,017 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-01T23:49:15,017 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-01T23:49:15,018 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-01T23:49:15,018 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-01T23:49:15,019 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-01T23:49:15,020 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-01T23:49:15,022 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-01T23:49:15,060 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-01T23:49:15,457 In file included from vendor/hmmer/src/errors.c:19: 2022-12-01T23:49:15,457 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:15,458 #error "No vector implementation enabled" 2022-12-01T23:49:15,458 ^~~~~ 2022-12-01T23:49:15,459 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,460 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:15,460 ^~~~~~ 2022-12-01T23:49:15,460 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,461 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:15,461 ^~~~~~ 2022-12-01T23:49:15,462 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,463 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:15,463 ^~~~~~ 2022-12-01T23:49:15,464 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,464 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:15,465 ^~~~~~ 2022-12-01T23:49:15,465 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,466 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:15,467 ^~~~~~~~~~~ 2022-12-01T23:49:15,467 P7_PROFILE 2022-12-01T23:49:15,471 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,472 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:15,473 ^~~~~~~~~~~ 2022-12-01T23:49:15,473 P7_PROFILE 2022-12-01T23:49:15,474 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,474 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:15,475 ^~~~~~~~~~~ 2022-12-01T23:49:15,475 P7_PROFILE 2022-12-01T23:49:15,476 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,476 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:15,477 ^~~~~~~~~~~ 2022-12-01T23:49:15,477 P7_PROFILE 2022-12-01T23:49:15,489 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,490 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:15,491 ^~~~~~~~~~~ 2022-12-01T23:49:15,491 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-01T23:49:15,492 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:15,493 #error "No vector implementation enabled" 2022-12-01T23:49:15,494 ^~~~~ 2022-12-01T23:49:15,495 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,495 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:15,496 ^~~~~~ 2022-12-01T23:49:15,496 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,498 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:15,518 ^~~~~~ 2022-12-01T23:49:15,519 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,520 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:15,521 ^~~~~~ 2022-12-01T23:49:15,521 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,522 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:15,523 ^~~~~~ 2022-12-01T23:49:15,523 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,524 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:15,525 ^~~~~~~~~~~ 2022-12-01T23:49:15,526 P7_PROFILE 2022-12-01T23:49:15,526 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,527 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:15,538 ^~~~~~~~~~~ 2022-12-01T23:49:15,539 P7_PROFILE 2022-12-01T23:49:15,540 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,540 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:15,541 ^~~~~~~~~~~ 2022-12-01T23:49:15,542 P7_PROFILE 2022-12-01T23:49:15,543 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,544 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:15,545 ^~~~~~~~~~~ 2022-12-01T23:49:15,546 P7_PROFILE 2022-12-01T23:49:15,546 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,547 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,568 ^~~~~~~~~~~ 2022-12-01T23:49:15,569 P7_PROFILE 2022-12-01T23:49:15,570 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,570 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:15,571 ^~~~~~~~~~~ 2022-12-01T23:49:15,572 P7_PROFILE 2022-12-01T23:49:15,573 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,574 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,574 ^~~~~~ 2022-12-01T23:49:15,575 P7_GMX 2022-12-01T23:49:15,576 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,577 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,577 ^~~~~~ 2022-12-01T23:49:15,588 P7_GMX 2022-12-01T23:49:15,589 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,590 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:15,590 ^~~~~~~~~~~ 2022-12-01T23:49:15,591 P7_PROFILE 2022-12-01T23:49:15,592 In file included from vendor/hmmer/src/build.c:32: 2022-12-01T23:49:15,592 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:15,593 #error "No vector implementation enabled" 2022-12-01T23:49:15,594 ^~~~~ 2022-12-01T23:49:15,594 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,595 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,596 ^~~~~~ 2022-12-01T23:49:15,597 P7_GMX 2022-12-01T23:49:15,598 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,604 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:15,605 ^~~~~~ 2022-12-01T23:49:15,606 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,607 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:15,607 ^~~~~~~~~~~ 2022-12-01T23:49:15,608 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,609 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:15,609 ^~~~~~ 2022-12-01T23:49:15,610 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,611 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:15,612 ^~~~~~ 2022-12-01T23:49:15,613 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,613 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:15,614 ^~~~~~ 2022-12-01T23:49:15,615 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,615 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,616 ^~~~~~ 2022-12-01T23:49:15,616 P7_GMX 2022-12-01T23:49:15,617 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,617 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:15,628 ^~~~~~~~~~~ 2022-12-01T23:49:15,629 P7_PROFILE 2022-12-01T23:49:15,629 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,630 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:15,630 ^~~~~~~~~~~ 2022-12-01T23:49:15,631 P7_PROFILE 2022-12-01T23:49:15,631 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,632 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:15,632 ^~~~~~~~~~~ 2022-12-01T23:49:15,633 P7_PROFILE 2022-12-01T23:49:15,634 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,634 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:15,635 ^~~~~~~~~~~ 2022-12-01T23:49:15,635 P7_PROFILE 2022-12-01T23:49:15,636 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,636 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:15,637 ^~~~~~~~~~~ 2022-12-01T23:49:15,637 P7_PROFILE 2022-12-01T23:49:15,638 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,648 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:15,649 ^~~~~~~~~~~ 2022-12-01T23:49:15,649 P7_PROFILE 2022-12-01T23:49:15,650 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,650 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,651 ^~~~~~~~~~~ 2022-12-01T23:49:15,651 P7_PROFILE 2022-12-01T23:49:15,652 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,653 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:15,654 ^~~~~~~~~~~ 2022-12-01T23:49:15,654 P7_PROFILE 2022-12-01T23:49:15,655 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,656 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,657 ^~~~~~ 2022-12-01T23:49:15,668 P7_GMX 2022-12-01T23:49:15,673 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,673 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:15,674 ^~~~~~~~~~~ 2022-12-01T23:49:15,674 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,675 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:15,677 ^~~~~~~~~~~ 2022-12-01T23:49:15,677 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,678 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,678 ^~~~~~ 2022-12-01T23:49:15,679 P7_GMX 2022-12-01T23:49:15,679 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,679 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:15,680 ^~~~~~~~~~~ 2022-12-01T23:49:15,680 P7_PROFILE 2022-12-01T23:49:15,681 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,681 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:15,682 ^~~~~~~~~~~ 2022-12-01T23:49:15,682 P7_PROFILE 2022-12-01T23:49:15,683 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,683 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,683 ^~~~~~ 2022-12-01T23:49:15,684 P7_GMX 2022-12-01T23:49:15,684 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,685 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:15,685 ^~~~~~~~~~~ 2022-12-01T23:49:15,685 P7_PROFILE 2022-12-01T23:49:15,686 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,686 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,687 ^~~~~~ 2022-12-01T23:49:15,687 P7_GMX 2022-12-01T23:49:15,687 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,688 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:15,689 ^~~~~~~~~~~ 2022-12-01T23:49:15,689 P7_PROFILE 2022-12-01T23:49:15,690 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,692 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:15,692 ^~~~~~~~~~~ 2022-12-01T23:49:15,693 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-01T23:49:15,693 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:15,694 #error "No vector implementation enabled" 2022-12-01T23:49:15,694 ^~~~~ 2022-12-01T23:49:15,694 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,695 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:15,695 ^~~~~~~~~~~ 2022-12-01T23:49:15,695 P7_PROFILE 2022-12-01T23:49:15,696 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,696 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:15,696 ^~~~~~~~~~~ 2022-12-01T23:49:15,697 P7_PROFILE 2022-12-01T23:49:15,697 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,697 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:15,698 ^~~~~~ 2022-12-01T23:49:15,698 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,699 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:15,699 ^~~~~~ 2022-12-01T23:49:15,699 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,700 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:15,700 ^~~~~~ 2022-12-01T23:49:15,700 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,701 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:15,701 ^~~~~~~~~~~ 2022-12-01T23:49:15,701 P7_PROFILE 2022-12-01T23:49:15,702 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:15,702 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:15,703 ^~~~~~ 2022-12-01T23:49:15,703 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,703 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:15,704 ^~~~~~~~~~~ 2022-12-01T23:49:15,704 P7_PROFILE 2022-12-01T23:49:15,704 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,705 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:15,705 ^~~~~~~~~~~ 2022-12-01T23:49:15,705 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,706 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:15,706 ^~~~~~~~~~~ 2022-12-01T23:49:15,707 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,707 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:15,707 ^~~~~~~~~~~ 2022-12-01T23:49:15,708 P7_PROFILE 2022-12-01T23:49:15,708 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,709 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:15,709 ^~~~~~~~~~~ 2022-12-01T23:49:15,710 P7_PROFILE 2022-12-01T23:49:15,710 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,710 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:15,711 ^~~~~~~~~~~ 2022-12-01T23:49:15,711 P7_PROFILE 2022-12-01T23:49:15,711 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,712 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:15,712 ^~~~~~~~~~~ 2022-12-01T23:49:15,712 P7_PROFILE 2022-12-01T23:49:15,713 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,713 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:15,713 ^~~~~~~~~~~ 2022-12-01T23:49:15,714 P7_PROFILE 2022-12-01T23:49:15,714 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,714 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:15,715 ^~~~~~~~~~~ 2022-12-01T23:49:15,715 P7_PROFILE 2022-12-01T23:49:15,716 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-01T23:49:15,716 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,717 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:15,717 ^~~~~~~~~~~ 2022-12-01T23:49:15,717 P7_PROFILE 2022-12-01T23:49:15,718 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-01T23:49:15,718 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,719 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:15,719 ^~~~~~~~~~~ 2022-12-01T23:49:15,720 P7_PROFILE 2022-12-01T23:49:15,720 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,720 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:15,721 ^~~~~~~~~~~ 2022-12-01T23:49:15,721 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,721 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:15,722 ^~~~~~~~~~~ 2022-12-01T23:49:15,722 P7_PROFILE 2022-12-01T23:49:15,723 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,723 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:15,723 ^~~~~~~~~~~ 2022-12-01T23:49:15,724 P7_PROFILE 2022-12-01T23:49:15,724 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,725 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,725 ^~~~~~~~~~~ 2022-12-01T23:49:15,725 P7_PROFILE 2022-12-01T23:49:15,726 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,726 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:15,726 ^~~~~~~~~~~ 2022-12-01T23:49:15,727 P7_PROFILE 2022-12-01T23:49:15,727 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,728 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,728 ^~~~~~ 2022-12-01T23:49:15,729 P7_GMX 2022-12-01T23:49:15,729 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,730 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,730 ^~~~~~~~~~~ 2022-12-01T23:49:15,731 P7_PROFILE 2022-12-01T23:49:15,731 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,732 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,732 ^~~~~~ 2022-12-01T23:49:15,732 P7_GMX 2022-12-01T23:49:15,733 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,733 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,734 ^~~~~~ 2022-12-01T23:49:15,734 P7_GMX 2022-12-01T23:49:15,735 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,735 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,735 ^~~~~~ 2022-12-01T23:49:15,736 P7_GMX 2022-12-01T23:49:15,736 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,736 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,737 ^~~~~~ 2022-12-01T23:49:15,737 P7_GMX 2022-12-01T23:49:15,738 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,738 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,739 ^~~~~~ 2022-12-01T23:49:15,740 P7_GMX 2022-12-01T23:49:15,740 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,741 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,741 ^~~~~~ 2022-12-01T23:49:15,741 P7_GMX 2022-12-01T23:49:15,742 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,742 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:15,743 ^~~~~~~~~~~ 2022-12-01T23:49:15,743 P7_PROFILE 2022-12-01T23:49:15,743 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:15,744 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:15,744 ^~~~~~ 2022-12-01T23:49:15,745 P7_GMX 2022-12-01T23:49:15,745 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,746 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:15,746 ^~~~~~~~~~~ 2022-12-01T23:49:15,746 P7_PROFILE 2022-12-01T23:49:15,747 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,747 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:15,748 ^~~~~~~~~~~ 2022-12-01T23:49:15,749 P7_PROFILE 2022-12-01T23:49:15,749 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,750 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:15,750 ^~~~~~~~~~~ 2022-12-01T23:49:15,751 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,751 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:15,752 ^~~~~~~~~~~ 2022-12-01T23:49:15,752 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,752 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:15,753 ^~~~~~~~~~~ 2022-12-01T23:49:15,753 P7_PROFILE 2022-12-01T23:49:15,754 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,754 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:15,755 ^~~~~~~~~~~ 2022-12-01T23:49:15,755 P7_PROFILE 2022-12-01T23:49:15,755 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,756 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:15,756 ^~~~~~~~~~~ 2022-12-01T23:49:15,757 P7_PROFILE 2022-12-01T23:49:15,757 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,758 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:15,759 ^~~~~~~~~~~ 2022-12-01T23:49:15,759 P7_PROFILE 2022-12-01T23:49:15,760 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,760 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:15,761 ^~~~~~~~~~~ 2022-12-01T23:49:15,761 P7_PROFILE 2022-12-01T23:49:15,762 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,762 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:15,763 ^~~~~~~~~~~ 2022-12-01T23:49:15,763 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:15,763 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:15,764 ^~~~~~~~~~~ 2022-12-01T23:49:15,764 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,765 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:15,765 ^~~~~~~~~~~ 2022-12-01T23:49:15,766 P7_PROFILE 2022-12-01T23:49:15,766 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,766 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:15,767 ^~~~~~~~~~~ 2022-12-01T23:49:15,767 P7_PROFILE 2022-12-01T23:49:15,769 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,769 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:15,770 ^~~~~~~~~~~ 2022-12-01T23:49:15,770 P7_PROFILE 2022-12-01T23:49:15,771 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:15,771 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:15,772 ^~~~~~~~~~~ 2022-12-01T23:49:15,772 P7_PROFILE 2022-12-01T23:49:15,773 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-01T23:49:15,773 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-01T23:49:15,774 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-01T23:49:15,774 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-01T23:49:15,774 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-01T23:49:15,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-01T23:49:15,929 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-01T23:49:15,931 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-01T23:49:15,958 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-01T23:49:15,963 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-01T23:49:16,041 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-01T23:49:16,042 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,042 #error "No vector implementation enabled" 2022-12-01T23:49:16,043 ^~~~~ 2022-12-01T23:49:16,044 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,044 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,045 ^~~~~~ 2022-12-01T23:49:16,045 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,046 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,046 ^~~~~~ 2022-12-01T23:49:16,047 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,047 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,048 ^~~~~~ 2022-12-01T23:49:16,049 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,049 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,049 ^~~~~~ 2022-12-01T23:49:16,050 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,051 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,052 ^~~~~~~~~~~ 2022-12-01T23:49:16,052 P7_PROFILE 2022-12-01T23:49:16,058 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,059 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,060 ^~~~~~~~~~~ 2022-12-01T23:49:16,060 P7_PROFILE 2022-12-01T23:49:16,060 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,061 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,061 ^~~~~~~~~~~ 2022-12-01T23:49:16,062 P7_PROFILE 2022-12-01T23:49:16,062 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,063 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,063 ^~~~~~~~~~~ 2022-12-01T23:49:16,064 P7_PROFILE 2022-12-01T23:49:16,064 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,064 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,065 ^~~~~~~~~~~ 2022-12-01T23:49:16,078 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,079 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,080 ^~~~~~~~~~~ 2022-12-01T23:49:16,081 P7_PROFILE 2022-12-01T23:49:16,081 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,082 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,082 ^~~~~~~~~~~ 2022-12-01T23:49:16,082 P7_PROFILE 2022-12-01T23:49:16,083 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,084 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,085 ^~~~~~~~~~~ 2022-12-01T23:49:16,085 P7_PROFILE 2022-12-01T23:49:16,086 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,086 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,087 ^~~~~~ 2022-12-01T23:49:16,088 P7_GMX 2022-12-01T23:49:16,094 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,094 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,095 ^~~~~~ 2022-12-01T23:49:16,095 P7_GMX 2022-12-01T23:49:16,096 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,097 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,098 ^~~~~~ 2022-12-01T23:49:16,098 P7_GMX 2022-12-01T23:49:16,099 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,099 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,100 ^~~~~~ 2022-12-01T23:49:16,101 P7_GMX 2022-12-01T23:49:16,101 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,102 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,102 ^~~~~~~~~~~ 2022-12-01T23:49:16,103 P7_PROFILE 2022-12-01T23:49:16,103 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,104 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,104 ^~~~~~~~~~~ 2022-12-01T23:49:16,119 P7_PROFILE 2022-12-01T23:49:16,119 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,120 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,123 ^~~~~~~~~~~ 2022-12-01T23:49:16,124 P7_PROFILE 2022-12-01T23:49:16,125 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,126 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,130 ^~~~~~~~~~~ 2022-12-01T23:49:16,131 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,133 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,135 ^~~~~~~~~~~ 2022-12-01T23:49:16,135 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,136 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,136 ^~~~~~~~~~~ 2022-12-01T23:49:16,137 P7_PROFILE 2022-12-01T23:49:16,137 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,138 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,139 ^~~~~~~~~~~ 2022-12-01T23:49:16,146 P7_PROFILE 2022-12-01T23:49:16,147 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,147 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,147 ^~~~~~~~~~~ 2022-12-01T23:49:16,148 P7_PROFILE 2022-12-01T23:49:16,167 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-01T23:49:16,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-01T23:49:16,191 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-01T23:49:16,194 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-01T23:49:16,197 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-01T23:49:16,210 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-01T23:49:16,211 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,211 #error "No vector implementation enabled" 2022-12-01T23:49:16,212 ^~~~~ 2022-12-01T23:49:16,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-01T23:49:16,213 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,214 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,214 ^~~~~~ 2022-12-01T23:49:16,215 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,216 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,216 ^~~~~~ 2022-12-01T23:49:16,217 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,218 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,218 ^~~~~~ 2022-12-01T23:49:16,219 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,220 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,221 ^~~~~~ 2022-12-01T23:49:16,223 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,223 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,227 ^~~~~~~~~~~ 2022-12-01T23:49:16,229 P7_PROFILE 2022-12-01T23:49:16,231 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,233 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,235 ^~~~~~~~~~~ 2022-12-01T23:49:16,237 P7_PROFILE 2022-12-01T23:49:16,238 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,243 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,243 ^~~~~~~~~~~ 2022-12-01T23:49:16,244 P7_PROFILE 2022-12-01T23:49:16,246 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,246 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,249 ^~~~~~~~~~~ 2022-12-01T23:49:16,249 P7_PROFILE 2022-12-01T23:49:16,250 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,255 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,256 ^~~~~~~~~~~ 2022-12-01T23:49:16,256 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,257 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,258 ^~~~~~~~~~~ 2022-12-01T23:49:16,258 P7_PROFILE 2022-12-01T23:49:16,259 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,259 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,260 ^~~~~~~~~~~ 2022-12-01T23:49:16,261 P7_PROFILE 2022-12-01T23:49:16,261 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,262 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,262 ^~~~~~~~~~~ 2022-12-01T23:49:16,262 P7_PROFILE 2022-12-01T23:49:16,263 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,264 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,264 ^~~~~~ 2022-12-01T23:49:16,264 P7_GMX 2022-12-01T23:49:16,265 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,265 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,266 ^~~~~~ 2022-12-01T23:49:16,266 P7_GMX 2022-12-01T23:49:16,266 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,267 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,267 ^~~~~~ 2022-12-01T23:49:16,267 P7_GMX 2022-12-01T23:49:16,268 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,269 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,269 ^~~~~~ 2022-12-01T23:49:16,270 P7_GMX 2022-12-01T23:49:16,291 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,293 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,293 ^~~~~~~~~~~ 2022-12-01T23:49:16,294 P7_PROFILE 2022-12-01T23:49:16,295 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,296 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,297 ^~~~~~~~~~~ 2022-12-01T23:49:16,297 P7_PROFILE 2022-12-01T23:49:16,299 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,300 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,300 ^~~~~~~~~~~ 2022-12-01T23:49:16,301 P7_PROFILE 2022-12-01T23:49:16,302 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,302 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,303 ^~~~~~~~~~~ 2022-12-01T23:49:16,303 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,303 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,304 ^~~~~~~~~~~ 2022-12-01T23:49:16,305 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,305 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,306 ^~~~~~~~~~~ 2022-12-01T23:49:16,306 P7_PROFILE 2022-12-01T23:49:16,307 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,307 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,308 ^~~~~~~~~~~ 2022-12-01T23:49:16,308 P7_PROFILE 2022-12-01T23:49:16,316 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,317 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,317 ^~~~~~~~~~~ 2022-12-01T23:49:16,318 P7_PROFILE 2022-12-01T23:49:16,362 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-01T23:49:16,364 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-01T23:49:16,649 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-01T23:49:16,650 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,651 #error "No vector implementation enabled" 2022-12-01T23:49:16,651 ^~~~~ 2022-12-01T23:49:16,651 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-01T23:49:16,652 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,652 #error "No vector implementation enabled" 2022-12-01T23:49:16,653 ^~~~~ 2022-12-01T23:49:16,653 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,654 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,654 ^~~~~~ 2022-12-01T23:49:16,655 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,656 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,657 ^~~~~~ 2022-12-01T23:49:16,657 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,658 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,658 ^~~~~~ 2022-12-01T23:49:16,659 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,660 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,661 ^~~~~~ 2022-12-01T23:49:16,662 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,662 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,663 ^~~~~~ 2022-12-01T23:49:16,663 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,664 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,665 ^~~~~~ 2022-12-01T23:49:16,666 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,667 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,667 ^~~~~~ 2022-12-01T23:49:16,669 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,669 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,670 ^~~~~~ 2022-12-01T23:49:16,671 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,671 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,672 ^~~~~~~~~~~ 2022-12-01T23:49:16,672 P7_PROFILE 2022-12-01T23:49:16,673 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,673 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,674 ^~~~~~~~~~~ 2022-12-01T23:49:16,674 P7_PROFILE 2022-12-01T23:49:16,674 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,675 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,675 ^~~~~~~~~~~ 2022-12-01T23:49:16,676 P7_PROFILE 2022-12-01T23:49:16,676 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,677 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,678 ^~~~~~~~~~~ 2022-12-01T23:49:16,679 P7_PROFILE 2022-12-01T23:49:16,679 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,680 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,681 ^~~~~~~~~~~ 2022-12-01T23:49:16,682 P7_PROFILE 2022-12-01T23:49:16,682 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,683 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,683 ^~~~~~~~~~~ 2022-12-01T23:49:16,683 P7_PROFILE 2022-12-01T23:49:16,684 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,685 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,685 ^~~~~~~~~~~ 2022-12-01T23:49:16,686 P7_PROFILE 2022-12-01T23:49:16,687 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,687 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,688 ^~~~~~~~~~~ 2022-12-01T23:49:16,689 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,690 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,690 ^~~~~~~~~~~ 2022-12-01T23:49:16,691 P7_PROFILE 2022-12-01T23:49:16,692 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,692 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,693 ^~~~~~~~~~~ 2022-12-01T23:49:16,693 P7_PROFILE 2022-12-01T23:49:16,694 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,695 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,695 ^~~~~~~~~~~ 2022-12-01T23:49:16,696 P7_PROFILE 2022-12-01T23:49:16,696 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,697 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,698 ^~~~~~~~~~~ 2022-12-01T23:49:16,699 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,700 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,700 ^~~~~~~~~~~ 2022-12-01T23:49:16,701 P7_PROFILE 2022-12-01T23:49:16,702 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,702 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,703 ^~~~~~ 2022-12-01T23:49:16,704 P7_GMX 2022-12-01T23:49:16,705 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,705 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,706 ^~~~~~ 2022-12-01T23:49:16,707 P7_GMX 2022-12-01T23:49:16,708 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,709 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,709 ^~~~~~ 2022-12-01T23:49:16,710 P7_GMX 2022-12-01T23:49:16,710 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,711 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,712 ^~~~~~ 2022-12-01T23:49:16,713 P7_GMX 2022-12-01T23:49:16,713 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,714 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,714 ^~~~~~~~~~~ 2022-12-01T23:49:16,715 P7_PROFILE 2022-12-01T23:49:16,715 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,716 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,717 ^~~~~~~~~~~ 2022-12-01T23:49:16,717 P7_PROFILE 2022-12-01T23:49:16,718 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,719 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,720 ^~~~~~~~~~~ 2022-12-01T23:49:16,721 P7_PROFILE 2022-12-01T23:49:16,721 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,722 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,723 ^~~~~~~~~~~ 2022-12-01T23:49:16,723 P7_PROFILE 2022-12-01T23:49:16,724 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,725 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,725 ^~~~~~~~~~~ 2022-12-01T23:49:16,726 P7_PROFILE 2022-12-01T23:49:16,726 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,727 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,727 ^~~~~~~~~~~ 2022-12-01T23:49:16,729 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,730 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,730 ^~~~~~~~~~~ 2022-12-01T23:49:16,731 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,731 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,732 ^~~~~~~~~~~ 2022-12-01T23:49:16,733 P7_PROFILE 2022-12-01T23:49:16,734 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,735 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,735 ^~~~~~~~~~~ 2022-12-01T23:49:16,736 P7_PROFILE 2022-12-01T23:49:16,736 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,736 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,737 ^~~~~~~~~~~ 2022-12-01T23:49:16,737 P7_PROFILE 2022-12-01T23:49:16,738 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,738 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,739 ^~~~~~ 2022-12-01T23:49:16,740 P7_GMX 2022-12-01T23:49:16,741 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,742 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,742 ^~~~~~ 2022-12-01T23:49:16,743 P7_GMX 2022-12-01T23:49:16,745 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,745 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,746 ^~~~~~~~~~~ 2022-12-01T23:49:16,747 P7_PROFILE 2022-12-01T23:49:16,747 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,748 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,749 ^~~~~~ 2022-12-01T23:49:16,750 P7_GMX 2022-12-01T23:49:16,750 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-01T23:49:16,751 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,752 #error "No vector implementation enabled" 2022-12-01T23:49:16,752 ^~~~~ 2022-12-01T23:49:16,752 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,753 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,754 ^~~~~~ 2022-12-01T23:49:16,755 P7_GMX 2022-12-01T23:49:16,755 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,756 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,756 ^~~~~~ 2022-12-01T23:49:16,758 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,758 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,759 ^~~~~~ 2022-12-01T23:49:16,761 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,761 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,762 ^~~~~~ 2022-12-01T23:49:16,763 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,763 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,764 ^~~~~~ 2022-12-01T23:49:16,764 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,765 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,765 ^~~~~~~~~~~ 2022-12-01T23:49:16,766 P7_PROFILE 2022-12-01T23:49:16,766 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,766 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,767 ^~~~~~~~~~~ 2022-12-01T23:49:16,768 P7_PROFILE 2022-12-01T23:49:16,769 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,770 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,771 ^~~~~~~~~~~ 2022-12-01T23:49:16,771 P7_PROFILE 2022-12-01T23:49:16,772 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,772 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,773 ^~~~~~~~~~~ 2022-12-01T23:49:16,774 P7_PROFILE 2022-12-01T23:49:16,774 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,775 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,775 ^~~~~~~~~~~ 2022-12-01T23:49:16,776 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,776 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,777 ^~~~~~~~~~~ 2022-12-01T23:49:16,777 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,777 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,778 ^~~~~~~~~~~ 2022-12-01T23:49:16,779 P7_PROFILE 2022-12-01T23:49:16,780 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,781 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,782 ^~~~~~~~~~~ 2022-12-01T23:49:16,783 P7_PROFILE 2022-12-01T23:49:16,783 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,784 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,784 ^~~~~~~~~~~ 2022-12-01T23:49:16,785 P7_PROFILE 2022-12-01T23:49:16,785 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,786 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,787 ^~~~~~~~~~~ 2022-12-01T23:49:16,787 P7_PROFILE 2022-12-01T23:49:16,788 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,788 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,789 ^~~~~~~~~~~ 2022-12-01T23:49:16,790 P7_PROFILE 2022-12-01T23:49:16,791 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,791 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,792 ^~~~~~~~~~~ 2022-12-01T23:49:16,792 P7_PROFILE 2022-12-01T23:49:16,793 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,793 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,794 ^~~~~~~~~~~ 2022-12-01T23:49:16,794 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-01T23:49:16,795 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-01T23:49:16,795 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,796 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,796 ^~~~~~~~~~~ 2022-12-01T23:49:16,797 P7_PROFILE 2022-12-01T23:49:16,798 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,798 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,799 ^~~~~~~~~~~ 2022-12-01T23:49:16,799 P7_PROFILE 2022-12-01T23:49:16,802 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,803 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,803 ^~~~~~~~~~~ 2022-12-01T23:49:16,804 P7_PROFILE 2022-12-01T23:49:16,807 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,807 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,808 ^~~~~~ 2022-12-01T23:49:16,809 P7_GMX 2022-12-01T23:49:16,809 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,810 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,811 ^~~~~~ 2022-12-01T23:49:16,811 P7_GMX 2022-12-01T23:49:16,812 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-01T23:49:16,813 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:16,813 #error "No vector implementation enabled" 2022-12-01T23:49:16,814 ^~~~~ 2022-12-01T23:49:16,814 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,815 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,815 ^~~~~~ 2022-12-01T23:49:16,815 P7_GMX 2022-12-01T23:49:16,816 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-01T23:49:16,816 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,817 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:16,817 ^~~~~~ 2022-12-01T23:49:16,818 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,819 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:16,820 ^~~~~~ 2022-12-01T23:49:16,820 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,821 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,821 ^~~~~~ 2022-12-01T23:49:16,822 P7_GMX 2022-12-01T23:49:16,823 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,824 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:16,824 ^~~~~~ 2022-12-01T23:49:16,825 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:16,825 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:16,826 ^~~~~~ 2022-12-01T23:49:16,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-01T23:49:16,828 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,829 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,829 ^~~~~~~~~~~ 2022-12-01T23:49:16,830 P7_PROFILE 2022-12-01T23:49:16,831 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,831 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:16,832 ^~~~~~~~~~~ 2022-12-01T23:49:16,833 P7_PROFILE 2022-12-01T23:49:16,833 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,834 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:16,834 ^~~~~~~~~~~ 2022-12-01T23:49:16,835 P7_PROFILE 2022-12-01T23:49:16,836 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,836 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,837 ^~~~~~~~~~~ 2022-12-01T23:49:16,837 P7_PROFILE 2022-12-01T23:49:16,838 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,838 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:16,839 ^~~~~~~~~~~ 2022-12-01T23:49:16,839 P7_PROFILE 2022-12-01T23:49:16,840 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,841 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,842 ^~~~~~~~~~~ 2022-12-01T23:49:16,842 P7_PROFILE 2022-12-01T23:49:16,843 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,844 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,845 ^~~~~~~~~~~ 2022-12-01T23:49:16,846 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,846 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,847 ^~~~~~~~~~~ 2022-12-01T23:49:16,847 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,848 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:16,848 ^~~~~~~~~~~ 2022-12-01T23:49:16,849 P7_PROFILE 2022-12-01T23:49:16,850 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,851 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,852 ^~~~~~~~~~~ 2022-12-01T23:49:16,852 P7_PROFILE 2022-12-01T23:49:16,853 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,854 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:16,855 ^~~~~~~~~~~ 2022-12-01T23:49:16,856 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,856 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,858 ^~~~~~~~~~~ 2022-12-01T23:49:16,859 P7_PROFILE 2022-12-01T23:49:16,859 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,860 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:16,861 ^~~~~~~~~~~ 2022-12-01T23:49:16,862 P7_PROFILE 2022-12-01T23:49:16,863 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,864 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:16,864 ^~~~~~~~~~~ 2022-12-01T23:49:16,865 P7_PROFILE 2022-12-01T23:49:16,866 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,867 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,868 ^~~~~~~~~~~ 2022-12-01T23:49:16,869 P7_PROFILE 2022-12-01T23:49:16,870 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,871 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,872 ^~~~~~~~~~~ 2022-12-01T23:49:16,872 P7_PROFILE 2022-12-01T23:49:16,873 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,874 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,874 ^~~~~~ 2022-12-01T23:49:16,875 P7_GMX 2022-12-01T23:49:16,876 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,877 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,878 ^~~~~~ 2022-12-01T23:49:16,878 P7_GMX 2022-12-01T23:49:16,879 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,880 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,880 ^~~~~~ 2022-12-01T23:49:16,881 P7_GMX 2022-12-01T23:49:16,882 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-01T23:49:16,883 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,884 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-01T23:49:16,884 ^~~~~~ 2022-12-01T23:49:16,885 P7_GMX 2022-12-01T23:49:16,886 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,887 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-01T23:49:16,887 ^~~~~~ 2022-12-01T23:49:16,888 P7_GMX 2022-12-01T23:49:16,889 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:16,890 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:16,891 ^~~~~~ 2022-12-01T23:49:16,891 P7_GMX 2022-12-01T23:49:16,892 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,893 P7_OPROFILE *om = NULL; 2022-12-01T23:49:16,894 ^~~~~~~~~~~ 2022-12-01T23:49:16,895 P7_PROFILE 2022-12-01T23:49:16,896 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,896 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:16,897 ^~~~~~~~~~~ 2022-12-01T23:49:16,897 P7_PROFILE 2022-12-01T23:49:16,898 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,898 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-01T23:49:16,899 ^~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,899 p7_profile_Create 2022-12-01T23:49:16,900 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-01T23:49:16,901 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-01T23:49:16,902 ^ 2022-12-01T23:49:16,902 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,903 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:16,903 ^~~~~~~~~~~ 2022-12-01T23:49:16,904 P7_PROFILE 2022-12-01T23:49:16,905 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,906 p7_oprofile_Convert(gm, om); 2022-12-01T23:49:16,907 ^~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,907 p7_profile_Compare 2022-12-01T23:49:16,908 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,909 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:16,909 ^~~~~~~~~~~ 2022-12-01T23:49:16,910 P7_PROFILE 2022-12-01T23:49:16,910 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,911 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:16,911 ^~~~~~~~~~~ 2022-12-01T23:49:16,912 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:16,913 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:16,913 ^~~~~~~~~~~ 2022-12-01T23:49:16,914 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,914 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-01T23:49:16,915 ^~~~~~~~~~~~~ 2022-12-01T23:49:16,915 p7_gmx_Create 2022-12-01T23:49:16,916 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-01T23:49:16,917 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-01T23:49:16,917 ^ 2022-12-01T23:49:16,918 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-01T23:49:16,919 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-01T23:49:16,919 ^ 2022-12-01T23:49:16,920 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,920 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:16,921 ^~~~~~~~~~~ 2022-12-01T23:49:16,921 P7_PROFILE 2022-12-01T23:49:16,922 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,922 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-01T23:49:16,923 ^~~~~~~~~~~~~ 2022-12-01T23:49:16,923 p7_gmx_GrowTo 2022-12-01T23:49:16,924 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,925 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:16,925 ^~~~~~~~~~~ 2022-12-01T23:49:16,926 P7_PROFILE 2022-12-01T23:49:16,926 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:16,927 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:16,927 ^~~~~~~~~~~ 2022-12-01T23:49:16,927 P7_PROFILE 2022-12-01T23:49:16,928 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,929 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-01T23:49:16,930 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,930 p7_ReconfigLength 2022-12-01T23:49:16,931 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-01T23:49:16,932 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,933 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-01T23:49:16,933 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,934 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,934 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-01T23:49:16,935 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,936 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,936 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-01T23:49:16,937 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,937 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,938 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-01T23:49:16,938 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,939 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,940 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-01T23:49:16,940 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,941 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,941 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-01T23:49:16,942 ^~~~~~~~~~ 2022-12-01T23:49:16,943 p7_GForward 2022-12-01T23:49:16,944 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,944 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-01T23:49:16,945 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,945 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:16,946 if (ser_size != ptr - (*buf + *n)){ 2022-12-01T23:49:16,946 ^~ 2022-12-01T23:49:16,947 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,947 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-01T23:49:16,948 ^~~~~~~~~~~ 2022-12-01T23:49:16,949 p7_GBackward 2022-12-01T23:49:16,949 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-01T23:49:16,950 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,950 ret_obj->envsc = *((float *) &host_32bit); 2022-12-01T23:49:16,951 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,951 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,952 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-01T23:49:16,952 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,952 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,953 ret_obj->dombias = *((float *) &host_32bit); 2022-12-01T23:49:16,953 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,954 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,954 ret_obj->oasc = *((float *) &host_32bit); 2022-12-01T23:49:16,954 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,955 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,955 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-01T23:49:16,956 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,957 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,958 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-01T23:49:16,959 ^~~~~~~~~~~ 2022-12-01T23:49:16,959 p7_GDecoding 2022-12-01T23:49:16,960 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,960 ret_obj->lnP = *((double *) &host_64bit); 2022-12-01T23:49:16,960 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,961 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-01T23:49:16,961 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-01T23:49:16,961 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,962 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,962 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-01T23:49:16,963 ^~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,963 p7_GOptimalAccuracy 2022-12-01T23:49:16,963 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,964 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-01T23:49:16,964 ^~~~~~~~~~ 2022-12-01T23:49:16,964 p7_GOATrace 2022-12-01T23:49:16,965 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:16,965 if(ptr - (buf + *n) != obj_size){ 2022-12-01T23:49:16,966 ^~ 2022-12-01T23:49:16,966 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,967 p7_omx_Reuse(oxf); 2022-12-01T23:49:16,967 ^~~~~~~~~~~~ 2022-12-01T23:49:16,968 p7_gmx_Reuse 2022-12-01T23:49:16,968 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,969 p7_omx_Destroy(oxf); 2022-12-01T23:49:16,970 ^~~~~~~~~~~~~~ 2022-12-01T23:49:16,970 p7_gmx_Destroy 2022-12-01T23:49:16,971 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-01T23:49:16,971 p7_oprofile_Destroy(om); 2022-12-01T23:49:16,971 ^~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:16,972 p7_profile_Destroy 2022-12-01T23:49:17,003 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-01T23:49:17,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-01T23:49:17,073 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-01T23:49:17,075 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-01T23:49:17,332 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-01T23:49:17,333 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:17,333 #error "No vector implementation enabled" 2022-12-01T23:49:17,334 ^~~~~ 2022-12-01T23:49:17,334 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,335 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:17,335 ^~~~~~ 2022-12-01T23:49:17,336 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,336 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:17,337 ^~~~~~ 2022-12-01T23:49:17,337 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,338 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:17,339 ^~~~~~ 2022-12-01T23:49:17,340 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,340 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:17,341 ^~~~~~ 2022-12-01T23:49:17,343 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,344 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:17,346 ^~~~~~~~~~~ 2022-12-01T23:49:17,347 P7_PROFILE 2022-12-01T23:49:17,348 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,348 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:17,349 ^~~~~~~~~~~ 2022-12-01T23:49:17,350 P7_PROFILE 2022-12-01T23:49:17,350 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,351 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:17,356 ^~~~~~~~~~~ 2022-12-01T23:49:17,358 P7_PROFILE 2022-12-01T23:49:17,359 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,359 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:17,360 ^~~~~~~~~~~ 2022-12-01T23:49:17,361 P7_PROFILE 2022-12-01T23:49:17,364 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,365 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:17,366 ^~~~~~~~~~~ 2022-12-01T23:49:17,366 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,367 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:17,367 ^~~~~~~~~~~ 2022-12-01T23:49:17,376 P7_PROFILE 2022-12-01T23:49:17,377 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,378 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:17,379 ^~~~~~~~~~~ 2022-12-01T23:49:17,379 P7_PROFILE 2022-12-01T23:49:17,384 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,384 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,385 ^~~~~~~~~~~ 2022-12-01T23:49:17,385 P7_PROFILE 2022-12-01T23:49:17,386 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,386 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,387 ^~~~~~ 2022-12-01T23:49:17,388 P7_GMX 2022-12-01T23:49:17,388 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,389 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,390 ^~~~~~ 2022-12-01T23:49:17,390 P7_GMX 2022-12-01T23:49:17,391 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,392 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,392 ^~~~~~ 2022-12-01T23:49:17,393 P7_GMX 2022-12-01T23:49:17,394 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,395 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,396 ^~~~~~ 2022-12-01T23:49:17,397 P7_GMX 2022-12-01T23:49:17,398 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-01T23:49:17,399 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:17,399 #error "No vector implementation enabled" 2022-12-01T23:49:17,400 ^~~~~ 2022-12-01T23:49:17,401 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,402 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:17,402 ^~~~~~ 2022-12-01T23:49:17,403 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,403 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:17,404 ^~~~~~~~~~~ 2022-12-01T23:49:17,404 P7_PROFILE 2022-12-01T23:49:17,405 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,405 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:17,405 ^~~~~~ 2022-12-01T23:49:17,406 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,406 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:17,407 ^~~~~~ 2022-12-01T23:49:17,407 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,408 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:17,408 ^~~~~~ 2022-12-01T23:49:17,409 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,409 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:17,410 ^~~~~~~~~~~ 2022-12-01T23:49:17,411 P7_PROFILE 2022-12-01T23:49:17,412 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,413 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:17,414 ^~~~~~~~~~~ 2022-12-01T23:49:17,414 P7_PROFILE 2022-12-01T23:49:17,415 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,416 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:17,417 ^~~~~~~~~~~ 2022-12-01T23:49:17,417 P7_PROFILE 2022-12-01T23:49:17,418 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,419 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:17,419 ^~~~~~~~~~~ 2022-12-01T23:49:17,420 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,421 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:17,422 ^~~~~~~~~~~ 2022-12-01T23:49:17,422 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,423 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:17,424 ^~~~~~~~~~~ 2022-12-01T23:49:17,425 P7_PROFILE 2022-12-01T23:49:17,425 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,426 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:17,426 ^~~~~~~~~~~ 2022-12-01T23:49:17,427 P7_PROFILE 2022-12-01T23:49:17,428 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,429 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:17,429 ^~~~~~~~~~~ 2022-12-01T23:49:17,430 P7_PROFILE 2022-12-01T23:49:17,431 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,432 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:17,432 ^~~~~~~~~~~ 2022-12-01T23:49:17,433 P7_PROFILE 2022-12-01T23:49:17,434 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,434 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:17,435 ^~~~~~~~~~~ 2022-12-01T23:49:17,437 P7_PROFILE 2022-12-01T23:49:17,438 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,439 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:17,439 ^~~~~~~~~~~ 2022-12-01T23:49:17,440 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,441 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:17,441 ^~~~~~~~~~~ 2022-12-01T23:49:17,442 P7_PROFILE 2022-12-01T23:49:17,443 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,444 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:17,444 ^~~~~~~~~~~ 2022-12-01T23:49:17,445 P7_PROFILE 2022-12-01T23:49:17,446 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,446 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:17,447 ^~~~~~~~~~~ 2022-12-01T23:49:17,448 P7_PROFILE 2022-12-01T23:49:17,448 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,449 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,449 ^~~~~~~~~~~ 2022-12-01T23:49:17,450 P7_PROFILE 2022-12-01T23:49:17,450 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,451 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,452 ^~~~~~ 2022-12-01T23:49:17,452 P7_GMX 2022-12-01T23:49:17,453 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,454 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,454 ^~~~~~ 2022-12-01T23:49:17,455 P7_GMX 2022-12-01T23:49:17,456 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,457 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,457 ^~~~~~ 2022-12-01T23:49:17,458 P7_GMX 2022-12-01T23:49:17,458 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,459 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,459 ^~~~~~ 2022-12-01T23:49:17,460 P7_GMX 2022-12-01T23:49:17,461 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,462 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:17,462 ^~~~~~~~~~~ 2022-12-01T23:49:17,463 P7_PROFILE 2022-12-01T23:49:17,463 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,464 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:17,464 ^~~~~~~~~~~ 2022-12-01T23:49:17,465 P7_PROFILE 2022-12-01T23:49:17,465 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,466 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:17,466 ^~~~~~~~~~~ 2022-12-01T23:49:17,467 P7_PROFILE 2022-12-01T23:49:17,467 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,468 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:17,468 ^~~~~~~~~~~ 2022-12-01T23:49:17,469 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,470 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:17,471 ^~~~~~~~~~~ 2022-12-01T23:49:17,471 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,472 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:17,472 ^~~~~~~~~~~ 2022-12-01T23:49:17,473 P7_PROFILE 2022-12-01T23:49:17,473 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,474 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:17,474 ^~~~~~~~~~~ 2022-12-01T23:49:17,475 P7_PROFILE 2022-12-01T23:49:17,489 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,490 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:17,490 ^~~~~~~~~~~ 2022-12-01T23:49:17,491 P7_PROFILE 2022-12-01T23:49:17,492 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-01T23:49:17,492 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,493 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-01T23:49:17,493 ^~~~~~~~~~~ 2022-12-01T23:49:17,494 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-01T23:49:17,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-01T23:49:17,495 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-01T23:49:17,496 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,496 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-01T23:49:17,497 ^~~~~~~~~~~ 2022-12-01T23:49:17,497 P7_PROFILE 2022-12-01T23:49:17,503 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-01T23:49:17,504 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,504 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-01T23:49:17,505 ^~~~~~~~~~~ 2022-12-01T23:49:17,505 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-01T23:49:17,506 if ( size <= 0 ) { \ 2022-12-01T23:49:17,506 ^~~~ 2022-12-01T23:49:17,507 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-01T23:49:17,507 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-01T23:49:17,508 ^~~~~~~~~~~ 2022-12-01T23:49:17,508 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-01T23:49:17,509 if ( size <= 0 ) { \ 2022-12-01T23:49:17,510 ^~~~ 2022-12-01T23:49:17,510 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-01T23:49:17,511 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-01T23:49:17,511 ^ 2022-12-01T23:49:17,512 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-01T23:49:17,512 if ( size <= 0 ) { \ 2022-12-01T23:49:17,513 ^~~~ 2022-12-01T23:49:17,513 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-01T23:49:17,514 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-01T23:49:17,514 ^ 2022-12-01T23:49:17,515 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-01T23:49:17,515 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-01T23:49:17,516 ^~~~ 2022-12-01T23:49:17,516 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-01T23:49:17,517 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-01T23:49:17,518 ^ 2022-12-01T23:49:17,519 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-01T23:49:17,520 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-01T23:49:17,520 ^~~~ 2022-12-01T23:49:17,521 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-01T23:49:17,522 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-01T23:49:17,523 ^~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:17,523 p7_profile_Reuse 2022-12-01T23:49:17,524 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-01T23:49:17,525 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:17,526 #error "No vector implementation enabled" 2022-12-01T23:49:17,527 ^~~~~ 2022-12-01T23:49:17,527 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-01T23:49:17,528 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-01T23:49:17,528 ^~~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:17,529 p7_profile_Reuse 2022-12-01T23:49:17,529 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,530 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:17,530 ^~~~~~ 2022-12-01T23:49:17,531 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,532 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:17,533 ^~~~~~ 2022-12-01T23:49:17,534 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,535 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:17,536 ^~~~~~ 2022-12-01T23:49:17,537 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,538 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:17,539 ^~~~~~ 2022-12-01T23:49:17,539 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-01T23:49:17,540 if (om) p7_oprofile_Destroy(om); 2022-12-01T23:49:17,541 ^~~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:17,541 p7_profile_Destroy 2022-12-01T23:49:17,542 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-01T23:49:17,543 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,544 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-01T23:49:17,545 ^~~~~~~~~~~ 2022-12-01T23:49:17,546 P7_PROFILE 2022-12-01T23:49:17,546 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-01T23:49:17,547 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-01T23:49:17,548 ^ 2022-12-01T23:49:17,549 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,549 for (i = 0; i < cache->n; i++) 2022-12-01T23:49:17,550 ^ 2022-12-01T23:49:17,551 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-01T23:49:17,551 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-01T23:49:17,552 ^~~~~~~~~~~~~~~~~~ 2022-12-01T23:49:17,553 p7_profile_Sizeof 2022-12-01T23:49:17,553 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,554 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:17,554 ^~~~~~~~~~~ 2022-12-01T23:49:17,555 P7_PROFILE 2022-12-01T23:49:17,555 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-01T23:49:17,556 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,557 P7_OPROFILE *om; 2022-12-01T23:49:17,557 ^~~~~~~~~~~ 2022-12-01T23:49:17,558 P7_PROFILE 2022-12-01T23:49:17,559 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,559 for (i = 0; i < cache->n; i++) 2022-12-01T23:49:17,560 ^ 2022-12-01T23:49:17,560 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-01T23:49:17,561 if (om->name) free(om->name); 2022-12-01T23:49:17,561 ^~ 2022-12-01T23:49:17,562 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-01T23:49:17,562 if (om->name) free(om->name); 2022-12-01T23:49:17,563 ^~ 2022-12-01T23:49:17,563 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-01T23:49:17,563 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-01T23:49:17,564 ^~ 2022-12-01T23:49:17,564 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-01T23:49:17,565 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,566 for (i = 0; i < cache->n; i++) 2022-12-01T23:49:17,567 ^ 2022-12-01T23:49:17,567 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,568 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:17,568 ^~~~~~~~~~~ 2022-12-01T23:49:17,569 P7_PROFILE 2022-12-01T23:49:17,569 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-01T23:49:17,570 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:17,571 #error "No vector implementation enabled" 2022-12-01T23:49:17,572 ^~~~~ 2022-12-01T23:49:17,572 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,573 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:17,573 ^~~~~~ 2022-12-01T23:49:17,574 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,575 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:17,575 ^~~~~~ 2022-12-01T23:49:17,576 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,576 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:17,577 ^~~~~~ 2022-12-01T23:49:17,578 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,579 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:17,579 ^~~~~~ 2022-12-01T23:49:17,580 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,581 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:17,582 ^~~~~~~~~~~ 2022-12-01T23:49:17,583 P7_PROFILE 2022-12-01T23:49:17,583 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,584 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:17,584 ^~~~~~~~~~~ 2022-12-01T23:49:17,585 P7_PROFILE 2022-12-01T23:49:17,585 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,586 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:17,586 ^~~~~~~~~~~ 2022-12-01T23:49:17,587 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,587 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:17,588 ^~~~~~~~~~~ 2022-12-01T23:49:17,589 P7_PROFILE 2022-12-01T23:49:17,589 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,590 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:17,590 ^~~~~~~~~~~ 2022-12-01T23:49:17,591 P7_PROFILE 2022-12-01T23:49:17,592 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,592 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:17,592 ^~~~~~~~~~~ 2022-12-01T23:49:17,593 P7_PROFILE 2022-12-01T23:49:17,594 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,595 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:17,596 ^~~~~~~~~~~ 2022-12-01T23:49:17,596 P7_PROFILE 2022-12-01T23:49:17,597 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,597 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,598 ^~~~~~~~~~~ 2022-12-01T23:49:17,599 P7_PROFILE 2022-12-01T23:49:17,600 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,600 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:17,601 ^~~~~~~~~~~ 2022-12-01T23:49:17,601 P7_PROFILE 2022-12-01T23:49:17,602 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,603 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,604 ^~~~~~ 2022-12-01T23:49:17,604 P7_GMX 2022-12-01T23:49:17,605 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,606 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:17,606 ^~~~~~~~~~~ 2022-12-01T23:49:17,607 P7_PROFILE 2022-12-01T23:49:17,608 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,609 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,609 ^~~~~~ 2022-12-01T23:49:17,610 P7_GMX 2022-12-01T23:49:17,611 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,612 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,613 ^~~~~~ 2022-12-01T23:49:17,613 P7_GMX 2022-12-01T23:49:17,614 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,615 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:17,615 ^~~~~~~~~~~ 2022-12-01T23:49:17,616 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,616 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,616 ^~~~~~ 2022-12-01T23:49:17,617 P7_GMX 2022-12-01T23:49:17,617 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,618 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:17,618 ^~~~~~~~~~~ 2022-12-01T23:49:17,618 P7_PROFILE 2022-12-01T23:49:17,619 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,619 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:17,620 ^~~~~~~~~~~ 2022-12-01T23:49:17,621 P7_PROFILE 2022-12-01T23:49:17,622 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,622 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:17,623 ^~~~~~~~~~~ 2022-12-01T23:49:17,623 P7_PROFILE 2022-12-01T23:49:17,624 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,625 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:17,625 ^~~~~~~~~~~ 2022-12-01T23:49:17,626 P7_PROFILE 2022-12-01T23:49:17,626 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,627 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,627 ^~~~~~~~~~~ 2022-12-01T23:49:17,628 P7_PROFILE 2022-12-01T23:49:17,629 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,630 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:17,631 ^~~~~~~~~~~ 2022-12-01T23:49:17,631 P7_PROFILE 2022-12-01T23:49:17,632 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,632 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,632 ^~~~~~ 2022-12-01T23:49:17,633 P7_GMX 2022-12-01T23:49:17,634 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,635 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:17,636 ^~~~~~~~~~~ 2022-12-01T23:49:17,636 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,637 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:17,638 ^~~~~~~~~~~ 2022-12-01T23:49:17,638 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,639 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,639 ^~~~~~ 2022-12-01T23:49:17,640 P7_GMX 2022-12-01T23:49:17,640 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,641 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:17,641 ^~~~~~~~~~~ 2022-12-01T23:49:17,642 P7_PROFILE 2022-12-01T23:49:17,642 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,643 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,643 ^~~~~~ 2022-12-01T23:49:17,644 P7_GMX 2022-12-01T23:49:17,644 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,645 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:17,645 ^~~~~~~~~~~ 2022-12-01T23:49:17,646 P7_PROFILE 2022-12-01T23:49:17,647 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,648 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,648 ^~~~~~ 2022-12-01T23:49:17,649 P7_GMX 2022-12-01T23:49:17,649 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,650 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:17,650 ^~~~~~~~~~~ 2022-12-01T23:49:17,651 P7_PROFILE 2022-12-01T23:49:17,651 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,652 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:17,652 ^~~~~~~~~~~ 2022-12-01T23:49:17,653 P7_PROFILE 2022-12-01T23:49:17,653 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,654 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:17,655 ^~~~~~~~~~~ 2022-12-01T23:49:17,656 P7_PROFILE 2022-12-01T23:49:17,657 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,658 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:17,658 ^~~~~~~~~~~ 2022-12-01T23:49:17,659 P7_PROFILE 2022-12-01T23:49:17,659 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,660 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:17,660 ^~~~~~~~~~~ 2022-12-01T23:49:17,661 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,661 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:17,662 ^~~~~~~~~~~ 2022-12-01T23:49:17,662 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,663 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:17,664 ^~~~~~~~~~~ 2022-12-01T23:49:17,664 P7_PROFILE 2022-12-01T23:49:17,665 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,665 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:17,666 ^~~~~~~~~~~ 2022-12-01T23:49:17,666 P7_PROFILE 2022-12-01T23:49:17,667 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,667 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:17,668 ^~~~~~~~~~~ 2022-12-01T23:49:17,668 P7_PROFILE 2022-12-01T23:49:17,908 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-01T23:49:17,908 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-01T23:49:17,909 #error "No vector implementation enabled" 2022-12-01T23:49:17,909 ^~~~~ 2022-12-01T23:49:17,910 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,911 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-01T23:49:17,911 ^~~~~~ 2022-12-01T23:49:17,911 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,912 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-01T23:49:17,912 ^~~~~~ 2022-12-01T23:49:17,912 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,913 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-01T23:49:17,913 ^~~~~~ 2022-12-01T23:49:17,914 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-01T23:49:17,914 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-01T23:49:17,915 ^~~~~~ 2022-12-01T23:49:17,916 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,917 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-01T23:49:17,917 ^~~~~~~~~~~ 2022-12-01T23:49:17,918 P7_PROFILE 2022-12-01T23:49:17,919 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,920 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-01T23:49:17,920 ^~~~~~~~~~~ 2022-12-01T23:49:17,921 P7_PROFILE 2022-12-01T23:49:17,922 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,923 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-01T23:49:17,923 ^~~~~~~~~~~ 2022-12-01T23:49:17,923 P7_PROFILE 2022-12-01T23:49:17,925 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,925 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-01T23:49:17,925 ^~~~~~~~~~~ 2022-12-01T23:49:17,926 P7_PROFILE 2022-12-01T23:49:17,928 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,929 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-01T23:49:17,929 ^~~~~~~~~~~ 2022-12-01T23:49:17,938 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,939 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-01T23:49:17,939 ^~~~~~~~~~~ 2022-12-01T23:49:17,940 P7_PROFILE 2022-12-01T23:49:17,940 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,941 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-01T23:49:17,941 ^~~~~~~~~~~ 2022-12-01T23:49:17,941 P7_PROFILE 2022-12-01T23:49:17,942 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,942 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,943 ^~~~~~~~~~~ 2022-12-01T23:49:17,943 P7_PROFILE 2022-12-01T23:49:17,944 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,944 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,944 ^~~~~~ 2022-12-01T23:49:17,945 P7_GMX 2022-12-01T23:49:17,946 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,946 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,946 ^~~~~~ 2022-12-01T23:49:17,947 P7_GMX 2022-12-01T23:49:17,948 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,949 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,949 ^~~~~~ 2022-12-01T23:49:17,949 P7_GMX 2022-12-01T23:49:17,958 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-01T23:49:17,959 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-01T23:49:17,959 ^~~~~~ 2022-12-01T23:49:17,959 P7_GMX 2022-12-01T23:49:17,960 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,960 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-01T23:49:17,960 ^~~~~~~~~~~ 2022-12-01T23:49:17,961 P7_PROFILE 2022-12-01T23:49:17,962 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,962 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-01T23:49:17,962 ^~~~~~~~~~~ 2022-12-01T23:49:17,963 P7_PROFILE 2022-12-01T23:49:17,965 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,966 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-01T23:49:17,966 ^~~~~~~~~~~ 2022-12-01T23:49:17,967 P7_PROFILE 2022-12-01T23:49:17,967 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,967 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-01T23:49:17,968 ^~~~~~~~~~~ 2022-12-01T23:49:17,969 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-01T23:49:17,969 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-01T23:49:17,969 ^~~~~~~~~~~ 2022-12-01T23:49:17,970 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,970 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-01T23:49:17,970 ^~~~~~~~~~~ 2022-12-01T23:49:17,971 P7_PROFILE 2022-12-01T23:49:17,971 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,971 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-01T23:49:17,972 ^~~~~~~~~~~ 2022-12-01T23:49:17,972 P7_PROFILE 2022-12-01T23:49:17,978 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-01T23:49:17,979 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-01T23:49:17,979 ^~~~~~~~~~~ 2022-12-01T23:49:17,979 P7_PROFILE 2022-12-01T23:49:17,988 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-01T23:49:17,989 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,989 if (ranges[lo].lower > end) return -1; 2022-12-01T23:49:17,989 ^ 2022-12-01T23:49:17,990 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,991 if (ranges[hi].upper < start) return -1; 2022-12-01T23:49:17,991 ^ 2022-12-01T23:49:17,992 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,992 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-01T23:49:17,993 ^ 2022-12-01T23:49:17,993 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,994 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-01T23:49:17,994 ^~ 2022-12-01T23:49:17,995 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,995 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-01T23:49:17,996 ^~ 2022-12-01T23:49:17,997 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,997 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-01T23:49:17,997 ^~ 2022-12-01T23:49:17,998 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:17,999 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-01T23:49:17,999 ^~ 2022-12-01T23:49:18,001 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-01T23:49:18,001 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-01T23:49:18,002 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-01T23:49:18,002 ^~ 2022-12-01T23:49:18,002 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-01T23:49:18,002 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-01T23:49:18,003 ^~ 2022-12-01T23:49:18,008 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-01T23:49:18,009 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,009 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:49:18,009 ^ 2022-12-01T23:49:18,010 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:49:18,010 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-01T23:49:18,011 ^~~~~~~ 2022-12-01T23:49:18,011 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:49:18,011 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-01T23:49:18,012 ^~~ 2022-12-01T23:49:18,012 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-01T23:49:18,012 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-01T23:49:18,013 ^~~~~~~ 2022-12-01T23:49:18,013 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,013 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-01T23:49:18,014 ^ 2022-12-01T23:49:18,014 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-01T23:49:18,014 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-01T23:49:18,015 ^~~~~~~ 2022-12-01T23:49:18,015 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-01T23:49:18,015 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-01T23:49:18,016 ^~~ 2022-12-01T23:49:18,016 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-01T23:49:18,016 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-01T23:49:18,017 ^~~~~~~ 2022-12-01T23:49:18,017 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,017 for (j= start; j<=end; j++) 2022-12-01T23:49:18,018 ^~ 2022-12-01T23:49:18,018 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-01T23:49:18,019 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-01T23:49:18,019 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-01T23:49:18,019 ^~ 2022-12-01T23:49:18,020 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-01T23:49:18,020 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-01T23:49:18,020 ^~ 2022-12-01T23:49:18,023 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-01T23:49:18,023 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:18,024 for (i=0; iseq_count; i++) { 2022-12-01T23:49:18,024 ^ 2022-12-01T23:49:18,028 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,029 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-01T23:49:18,029 ^~ 2022-12-01T23:49:18,030 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,030 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-01T23:49:18,030 ^~ 2022-12-01T23:49:18,030 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,031 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-01T23:49:18,031 ^~ 2022-12-01T23:49:18,032 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-01T23:49:18,032 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-01T23:49:18,032 ^~ 2022-12-01T23:49:18,032 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:18,033 for (i=0; iambig_list->count; i++) { 2022-12-01T23:49:18,033 ^ 2022-12-01T23:49:18,034 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:18,034 for (i=0; iseq_count; i++) 2022-12-01T23:49:18,034 ^ 2022-12-01T23:49:18,035 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-01T23:49:18,036 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-01T23:49:18,036 for (i=0; iseq_count; i++) { 2022-12-01T23:49:18,037 ^ 2022-12-01T23:49:18,153 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-01T23:49:18,154 !! 2022-12-01T23:49:18,155 ############################ 2022-12-01T23:49:18,155 # Package would be ignored # 2022-12-01T23:49:18,155 ############################ 2022-12-01T23:49:18,156 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-01T23:49:18,156 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:49:18,157 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-01T23:49:18,157 because it may contain data files, but this behavior is likely to change 2022-12-01T23:49:18,157 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:49:18,158 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-01T23:49:18,158 the `packages` configuration field or the proper discovery methods 2022-12-01T23:49:18,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:49:18,159 instead of `find_packages(...)`/`find:`). 2022-12-01T23:49:18,159 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:49:18,160 documentation page. 2022-12-01T23:49:18,161 !! 2022-12-01T23:49:18,161 check.warn(importable) 2022-12-01T23:49:18,162 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-01T23:49:18,162 !! 2022-12-01T23:49:18,163 ############################ 2022-12-01T23:49:18,163 # Package would be ignored # 2022-12-01T23:49:18,163 ############################ 2022-12-01T23:49:18,164 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-01T23:49:18,164 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:49:18,165 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-01T23:49:18,165 because it may contain data files, but this behavior is likely to change 2022-12-01T23:49:18,165 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:49:18,166 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-01T23:49:18,166 the `packages` configuration field or the proper discovery methods 2022-12-01T23:49:18,167 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:49:18,167 instead of `find_packages(...)`/`find:`). 2022-12-01T23:49:18,168 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:49:18,168 documentation page. 2022-12-01T23:49:18,169 !! 2022-12-01T23:49:18,169 check.warn(importable) 2022-12-01T23:49:18,170 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-01T23:49:18,170 !! 2022-12-01T23:49:18,171 ############################ 2022-12-01T23:49:18,172 # Package would be ignored # 2022-12-01T23:49:18,172 ############################ 2022-12-01T23:49:18,173 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-01T23:49:18,173 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:49:18,174 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-01T23:49:18,174 because it may contain data files, but this behavior is likely to change 2022-12-01T23:49:18,175 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:49:18,176 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-01T23:49:18,176 the `packages` configuration field or the proper discovery methods 2022-12-01T23:49:18,177 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:49:18,177 instead of `find_packages(...)`/`find:`). 2022-12-01T23:49:18,178 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:49:18,178 documentation page. 2022-12-01T23:49:18,179 !! 2022-12-01T23:49:18,180 check.warn(importable) 2022-12-01T23:49:18,181 /tmp/pip-build-env-0s25n6ce/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-01T23:49:18,181 !! 2022-12-01T23:49:18,182 ############################ 2022-12-01T23:49:18,182 # Package would be ignored # 2022-12-01T23:49:18,183 ############################ 2022-12-01T23:49:18,183 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-01T23:49:18,184 but it is not listed in the `packages` configuration of setuptools. 2022-12-01T23:49:18,185 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-01T23:49:18,185 because it may contain data files, but this behavior is likely to change 2022-12-01T23:49:18,186 in future versions of setuptools (and therefore is considered deprecated). 2022-12-01T23:49:18,186 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-01T23:49:18,187 the `packages` configuration field or the proper discovery methods 2022-12-01T23:49:18,187 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-01T23:49:18,187 instead of `find_packages(...)`/`find:`). 2022-12-01T23:49:18,188 You can read more about "package discovery" and "data files" on setuptools 2022-12-01T23:49:18,189 documentation page. 2022-12-01T23:49:18,190 !! 2022-12-01T23:49:18,191 check.warn(importable) 2022-12-01T23:49:18,191 checking whether can be included... yes 2022-12-01T23:49:18,192 checking whether can be included... yes 2022-12-01T23:49:18,192 checking whether can be included... yes 2022-12-01T23:49:18,192 checking whether can be included... yes 2022-12-01T23:49:18,193 checking whether can be included... yes 2022-12-01T23:49:18,193 checking whether can be included... yes 2022-12-01T23:49:18,193 checking whether can be included... yes 2022-12-01T23:49:18,194 checking whether can be included... yes 2022-12-01T23:49:18,194 checking whether can be included... yes 2022-12-01T23:49:18,194 checking whether can be included... yes 2022-12-01T23:49:18,195 checking whether can be included... yes 2022-12-01T23:49:18,195 checking whether can be included... yes 2022-12-01T23:49:18,196 checking whether can be included... yes 2022-12-01T23:49:18,196 checking whether function 'aligned_alloc' is available... no 2022-12-01T23:49:18,196 checking whether function 'erfc' is available... no 2022-12-01T23:49:18,197 checking whether function 'getpid' is available... yes 2022-12-01T23:49:18,197 checking whether function '_mm_malloc' is available... no 2022-12-01T23:49:18,198 checking whether function 'popen' is available... yes 2022-12-01T23:49:18,198 checking whether function 'posix_memalign' is available... yes 2022-12-01T23:49:18,198 checking whether function 'strcasecmp' is available... yes 2022-12-01T23:49:18,199 checking whether function 'strsep' is available... yes 2022-12-01T23:49:18,199 checking whether function 'sysconf' is available... yes 2022-12-01T23:49:18,199 checking whether function 'sysctl' is available... yes 2022-12-01T23:49:18,200 checking whether function 'times' is available... yes 2022-12-01T23:49:18,200 checking whether function 'fseeko' is available... yes 2022-12-01T23:49:18,201 checking whether can be included... yes 2022-12-01T23:49:18,201 checking whether can be included... yes 2022-12-01T23:49:18,202 checking whether can be included... yes 2022-12-01T23:49:18,202 checking whether can be included... yes 2022-12-01T23:49:18,202 checking whether can be included... yes 2022-12-01T23:49:18,203 checking whether can be included... yes 2022-12-01T23:49:18,203 checking whether can be included... yes 2022-12-01T23:49:18,204 checking whether can be included... yes 2022-12-01T23:49:18,204 checking whether function 'mkstemp' is available... yes 2022-12-01T23:49:18,204 checking whether function 'popen' is available... yes 2022-12-01T23:49:18,205 checking whether function 'putenv' is available... yes 2022-12-01T23:49:18,205 checking whether function 'strcasecmp' is available... yes 2022-12-01T23:49:18,206 checking whether function 'strsep' is available... yes 2022-12-01T23:49:18,206 checking whether function 'times' is available... yes 2022-12-01T23:49:18,207 checking whether function 'getpid' is available... yes 2022-12-01T23:49:18,207 checking whether function 'sysctl' is available... yes 2022-12-01T23:49:18,208 checking whether function 'sysconf' is available... yes 2022-12-01T23:49:18,208 checking whether function 'getcwd' is available... yes 2022-12-01T23:49:18,209 checking whether function 'chmod' is available... yes 2022-12-01T23:49:18,209 checking whether function 'stat' is available... yes 2022-12-01T23:49:18,210 checking whether function 'fstat' is available... yes 2022-12-01T23:49:18,210 checking whether function 'erfc' is available... no 2022-12-01T23:49:18,211 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-01T23:49:18,429 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-01T23:49:18,476 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpskejaab9[/] 2022-12-01T23:49:18,476 [bold magenta]cwd[/]: /tmp/pip-wheel-1tw3xbbh/pyhmmer_4722174395b34e8280dbff0a90a5e0eb 2022-12-01T23:49:18,477 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-01T23:49:18,482 ERROR: Failed building wheel for pyhmmer 2022-12-01T23:49:18,487 Failed to build pyhmmer 2022-12-01T23:49:18,490 ERROR: Failed to build one or more wheels 2022-12-01T23:49:18,492 Exception information: 2022-12-01T23:49:18,492 Traceback (most recent call last): 2022-12-01T23:49:18,492 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-01T23:49:18,492 status = run_func(*args) 2022-12-01T23:49:18,492 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-01T23:49:18,492 return func(self, options, args) 2022-12-01T23:49:18,492 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-01T23:49:18,492 raise CommandError("Failed to build one or more wheels") 2022-12-01T23:49:18,492 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-01T23:49:18,502 Removed build tracker: '/tmp/pip-build-tracker-a4a0d3hc'