2022-12-02T09:21:06,028 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1xi4g2t 2022-12-02T09:21:06,032 Created temporary directory: /tmp/pip-build-tracker-07bq0naz 2022-12-02T09:21:06,033 Initialized build tracking at /tmp/pip-build-tracker-07bq0naz 2022-12-02T09:21:06,033 Created build tracker: /tmp/pip-build-tracker-07bq0naz 2022-12-02T09:21:06,034 Entered build tracker: /tmp/pip-build-tracker-07bq0naz 2022-12-02T09:21:06,035 Created temporary directory: /tmp/pip-wheel-jhewb55_ 2022-12-02T09:21:06,043 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-02T09:21:06,048 Created temporary directory: /tmp/pip-ephem-wheel-cache-qk0gycn5 2022-12-02T09:21:06,098 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-02T09:21:06,106 2 location(s) to search for versions of biobb-adapters: 2022-12-02T09:21:06,106 * https://pypi.org/simple/biobb-adapters/ 2022-12-02T09:21:06,106 * https://www.piwheels.org/simple/biobb-adapters/ 2022-12-02T09:21:06,107 Fetching project page and analyzing links: https://pypi.org/simple/biobb-adapters/ 2022-12-02T09:21:06,108 Getting page https://pypi.org/simple/biobb-adapters/ 2022-12-02T09:21:06,111 Found index url https://pypi.org/simple 2022-12-02T09:21:06,329 Fetched page https://pypi.org/simple/biobb-adapters/ as application/vnd.pypi.simple.v1+json 2022-12-02T09:21:06,339 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/6e/48/fa9f1781406343cda29442d0ad67f8fa113f3661c8a62ae599a225e559d6/biobb_adapters-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,341 Found link https://files.pythonhosted.org/packages/ea/47/5763ae5620f550174e112f8231676887f996c7c7bdacb854a46860abf447/biobb_adapters-0.0.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.0.1 2022-12-02T09:21:06,342 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/0f/61/dc32b2bcfb9b1d1c8d79dc96d32671a901cd83acd1b6184772cdef43c920/biobb_adapters-0.1.2-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,343 Found link https://files.pythonhosted.org/packages/3e/05/6809d3f7ea93db6f0bceb198539299a5e33e6315b666d04e6e57568e7f11/biobb_adapters-0.1.2.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.2 2022-12-02T09:21:06,344 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/d8/34/06237256a2caa148311d8093a3f71206668f61b7cd20799b8ecf6563cbce/biobb_adapters-0.1.3-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,345 Found link https://files.pythonhosted.org/packages/cf/8d/f1da413a4007f55934dff4375e5d87d0b0f8fb7d84c1062157948f4392c9/biobb_adapters-0.1.3.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.3 2022-12-02T09:21:06,346 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/10/82/a1f366057fb6d101117ace12799cda70ce00ea9c76277d2c8e08e2fafc14/biobb_adapters-0.1.4-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,347 Found link https://files.pythonhosted.org/packages/fc/71/7d6174c4c56a7b38322a5a99c1d72c4f6b1115106508a887fbbda63e30d4/biobb_adapters-0.1.4.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 0.1.4 2022-12-02T09:21:06,348 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/af/fd/491ede12a15215794041755b568998a5ff3e8c2e1e8df7b5cec044dcdc6e/biobb_adapters-3.6.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,349 Found link https://files.pythonhosted.org/packages/d4/8e/89622b96a2f6255ba0313fb1eaf264343e3c7c1c2e2bcbb0544b990d32bc/biobb_adapters-3.6.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.0 2022-12-02T09:21:06,350 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/76/dc/444595a3497f5b5e9220cfb8c683abb044a799aa63249e69fa1c8c46c51b/biobb_adapters-3.6.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,351 Found link https://files.pythonhosted.org/packages/1c/c1/1cb78ece834741799903f6eac3dd0035297ff1c7cbb75f391ec9d5edd95b/biobb_adapters-3.6.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.6.1 2022-12-02T09:21:06,352 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/ba/21/064ebc456bb946b0e94829c80dfd6adc302bc65cf2d4eb774a5a1da47d90/biobb_adapters-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:06,353 Found link https://files.pythonhosted.org/packages/8d/bd/df127a6c4c110ffd8e6cf6a5a186fb0ddd180f7fd15f3283f5588834a605/biobb_adapters-3.7.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3), version: 3.7.0 2022-12-02T09:21:06,354 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/48/da/7e3fc1435ec04371f16bcc6c8d39f0b4c5c74195d1847a07862f23aa5c59/biobb_adapters-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2022-12-02T09:21:06,355 Found link https://files.pythonhosted.org/packages/9c/cc/757e3378f55f0e6de3c20e924e551493315d7be28a5c304397faf993bab3/biobb_adapters-3.8.0.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.0 2022-12-02T09:21:06,356 Skipping link: No binaries permitted for biobb-adapters: https://files.pythonhosted.org/packages/cb/e7/5a1b54a0aecde3bf2fb8f891afba3f75349a0d2b0941b7984d15b06cf0e5/biobb_adapters-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7) 2022-12-02T09:21:06,357 Found link https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz (from https://pypi.org/simple/biobb-adapters/) (requires-python:>=3.7), version: 3.8.1 2022-12-02T09:21:06,358 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-adapters/ 2022-12-02T09:21:06,359 Getting page https://www.piwheels.org/simple/biobb-adapters/ 2022-12-02T09:21:06,361 Found index url https://www.piwheels.org/simple 2022-12-02T09:21:07,032 Fetched page https://www.piwheels.org/simple/biobb-adapters/ as text/html 2022-12-02T09:21:07,041 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.8.0-py3-none-any.whl#sha256=b292fb32ccd27073b7e6361b3aba9b76a5c482a106f56dab11448ab7f34019e2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3.7) 2022-12-02T09:21:07,041 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.7.0-py3-none-any.whl#sha256=87c2d259b7048ea5f5b42b1af9b4ec0ebeea79a3bf75d12b74e150a6912939ec (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,042 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.1-py3-none-any.whl#sha256=8260317060e532fea600980ac833bd79b07ac5df283349b573221a8a7c732506 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,042 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-3.6.0-py3-none-any.whl#sha256=deec3d977dc1d2088be8a28197d1bd98650e1baba87d45b5d2ef7fed41fa671c (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,043 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.4-py3-none-any.whl#sha256=f26f2aaffd33d22a606ba569276dcfd04bce56a2e8ab8e382acc2646b01f3a85 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,044 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.3-py3-none-any.whl#sha256=3d9b62abc78a28b54c050954fd6ee0e3a1fed164a3d3b8d6eadadd0b25b775d2 (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,044 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.1.2-py3-none-any.whl#sha256=0acb06de199e0ac06376a0ffe5e2071445ee7a36fce431a17edc27fdf218492d (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,045 Skipping link: No binaries permitted for biobb-adapters: https://www.piwheels.org/simple/biobb-adapters/biobb_adapters-0.0.1-py3-none-any.whl#sha256=cf710e8eb6bc1256248c69baea53ce2727fc707766e31bcf25fc9b9cfe66745a (from https://www.piwheels.org/simple/biobb-adapters/) (requires-python:>=3) 2022-12-02T09:21:07,045 Skipping link: not a file: https://www.piwheels.org/simple/biobb-adapters/ 2022-12-02T09:21:07,046 Skipping link: not a file: https://pypi.org/simple/biobb-adapters/ 2022-12-02T09:21:07,085 Given no hashes to check 1 links for project 'biobb-adapters': discarding no candidates 2022-12-02T09:21:07,115 Collecting biobb-adapters==3.8.1 2022-12-02T09:21:07,119 Created temporary directory: /tmp/pip-unpack-282g93jy 2022-12-02T09:21:09,156 Downloading biobb_adapters-3.8.1.tar.gz (39.4 MB) 2022-12-02T09:21:30,233 Added biobb-adapters==3.8.1 from https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-07bq0naz' 2022-12-02T09:21:30,236 Running setup.py (path:/tmp/pip-wheel-jhewb55_/biobb-adapters_555390fbdaeb401d94ab7dd8696bdd1a/setup.py) egg_info for package biobb-adapters 2022-12-02T09:21:30,238 Created temporary directory: /tmp/pip-pip-egg-info-9picif57 2022-12-02T09:21:30,238 Preparing metadata (setup.py): started 2022-12-02T09:21:30,241 Running command python setup.py egg_info 2022-12-02T09:21:32,472 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-02T09:21:32,713 running egg_info 2022-12-02T09:21:32,719 creating /tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info 2022-12-02T09:21:32,780 writing /tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/PKG-INFO 2022-12-02T09:21:32,786 writing dependency_links to /tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/dependency_links.txt 2022-12-02T09:21:32,790 writing requirements to /tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/requires.txt 2022-12-02T09:21:32,792 writing top-level names to /tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/top_level.txt 2022-12-02T09:21:32,794 writing manifest file '/tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/SOURCES.txt' 2022-12-02T09:21:33,068 reading manifest file '/tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/SOURCES.txt' 2022-12-02T09:21:33,071 reading manifest template 'MANIFEST.in' 2022-12-02T09:21:33,581 writing manifest file '/tmp/pip-pip-egg-info-9picif57/biobb_adapters.egg-info/SOURCES.txt' 2022-12-02T09:21:33,787 Preparing metadata (setup.py): finished with status 'done' 2022-12-02T09:21:33,800 Source in /tmp/pip-wheel-jhewb55_/biobb-adapters_555390fbdaeb401d94ab7dd8696bdd1a has version 3.8.1, which satisfies requirement biobb-adapters==3.8.1 from https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz 2022-12-02T09:21:33,802 Removed biobb-adapters==3.8.1 from https://files.pythonhosted.org/packages/50/7a/7ce78a35dfc275fa95aaa96e3f52ff9bb12ccb5d6c47697439aa4ea737ae/biobb_adapters-3.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-07bq0naz' 2022-12-02T09:21:33,817 Created temporary directory: /tmp/pip-unpack-b1oky4eb 2022-12-02T09:21:33,818 Building wheels for collected packages: biobb-adapters 2022-12-02T09:21:33,828 Created temporary directory: /tmp/pip-wheel-0kr1hq3o 2022-12-02T09:21:33,829 Building wheel for biobb-adapters (setup.py): started 2022-12-02T09:21:33,831 Destination directory: /tmp/pip-wheel-0kr1hq3o 2022-12-02T09:21:33,832 Running command python setup.py bdist_wheel 2022-12-02T09:21:36,042 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-02T09:21:36,318 running bdist_wheel 2022-12-02T09:21:37,060 running build 2022-12-02T09:21:37,061 running build_py 2022-12-02T09:21:37,131 creating build 2022-12-02T09:21:37,132 creating build/lib 2022-12-02T09:21:37,133 creating build/lib/biobb_adapters 2022-12-02T09:21:37,136 copying biobb_adapters/__init__.py -> build/lib/biobb_adapters 2022-12-02T09:21:37,141 creating build/lib/biobb_adapters/pycompss 2022-12-02T09:21:37,143 copying biobb_adapters/pycompss/__init__.py -> build/lib/biobb_adapters/pycompss 2022-12-02T09:21:37,147 creating build/lib/biobb_adapters/pycompss/biobb_io 2022-12-02T09:21:37,149 copying biobb_adapters/pycompss/biobb_io/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io 2022-12-02T09:21:37,153 creating build/lib/biobb_adapters/pycompss/biobb_cmip 2022-12-02T09:21:37,154 copying biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip 2022-12-02T09:21:37,159 creating build/lib/biobb_adapters/pycompss/biobb_chemistry 2022-12-02T09:21:37,160 copying biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry 2022-12-02T09:21:37,164 creating build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:37,165 copying biobb_adapters/pycompss/biobb_commons/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:37,168 copying biobb_adapters/pycompss/biobb_commons/task_config.py -> build/lib/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:37,173 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils 2022-12-02T09:21:37,174 copying biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils 2022-12-02T09:21:37,178 creating build/lib/biobb_adapters/pycompss/biobb_ml 2022-12-02T09:21:37,180 copying biobb_adapters/pycompss/biobb_ml/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml 2022-12-02T09:21:37,184 creating build/lib/biobb_adapters/pycompss/biobb_md 2022-12-02T09:21:37,185 copying biobb_adapters/pycompss/biobb_md/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md 2022-12-02T09:21:37,189 creating build/lib/biobb_adapters/pycompss/biobb_pmx 2022-12-02T09:21:37,190 copying biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx 2022-12-02T09:21:37,194 creating build/lib/biobb_adapters/pycompss/biobb_model 2022-12-02T09:21:37,196 copying biobb_adapters/pycompss/biobb_model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model 2022-12-02T09:21:37,199 creating build/lib/biobb_adapters/pycompss/biobb_amber 2022-12-02T09:21:37,201 copying biobb_adapters/pycompss/biobb_amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber 2022-12-02T09:21:37,205 creating build/lib/biobb_adapters/pycompss/biobb_analysis 2022-12-02T09:21:37,206 copying biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis 2022-12-02T09:21:37,210 creating build/lib/biobb_adapters/pycompss/biobb_vs 2022-12-02T09:21:37,212 copying biobb_adapters/pycompss/biobb_vs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs 2022-12-02T09:21:37,218 creating build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,219 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,223 copying biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,225 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,228 copying biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,232 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,235 copying biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,238 copying biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,241 copying biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,244 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,247 copying biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,251 copying biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,254 copying biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,257 copying biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,260 copying biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,264 copying biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,267 copying biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,270 copying biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,273 copying biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,276 copying biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/lib/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:37,281 creating build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,282 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,286 copying biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,288 copying biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,292 copying biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,295 copying biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,298 copying biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/lib/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:37,303 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,305 copying biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,307 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,311 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,314 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,317 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,320 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,323 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,326 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,330 copying biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:37,335 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,336 copying biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,339 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,343 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,346 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,349 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,352 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,355 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,358 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,361 copying biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:37,366 creating build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,367 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,370 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,373 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,376 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,379 copying biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:37,386 creating build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,388 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,391 copying biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,394 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,397 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,400 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,403 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,406 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,409 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,412 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,416 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,419 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,422 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,425 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,428 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,431 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,435 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,438 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,441 copying biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,444 copying biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,447 copying biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,450 copying biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,454 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,457 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,460 copying biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,463 copying biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,466 copying biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,469 copying biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:37,474 creating build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,475 copying biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,479 copying biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,482 copying biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,484 copying biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,487 copying biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/lib/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:37,492 creating build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,494 copying biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,497 copying biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,500 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,503 copying biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,506 copying biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,509 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,512 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,515 copying biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,518 copying biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:37,524 creating build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,525 copying biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,528 copying biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,531 copying biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,534 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,537 copying biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,540 copying biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,544 copying biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:37,548 creating build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:37,550 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:37,552 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:37,556 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:37,559 copying biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:37,564 creating build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,565 copying biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,568 copying biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,571 copying biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,574 copying biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,578 copying biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,581 copying biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,584 copying biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,587 copying biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/lib/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:37,592 creating build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,593 copying biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,596 copying biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,599 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,602 copying biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,605 copying biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,608 copying biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,611 copying biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,614 copying biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/lib/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:37,619 creating build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:37,620 copying biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:37,623 copying biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:37,626 copying biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:37,630 copying biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/lib/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:37,635 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,636 copying biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,639 copying biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,642 copying biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,645 copying biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,648 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,652 copying biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,655 copying biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,658 copying biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,662 copying biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,665 copying biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,668 copying biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:37,673 creating build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,675 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,678 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,681 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,684 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,687 copying biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:37,692 creating build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,694 copying biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,697 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,700 copying biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,704 copying biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,707 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,710 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,713 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,716 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,719 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,723 copying biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,726 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,729 copying biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/lib/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:37,734 creating build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,736 copying biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,739 copying biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,742 copying biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,745 copying biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,748 copying biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,752 copying biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,755 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,758 copying biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,761 copying biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,764 copying biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,768 copying biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,771 copying biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/lib/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:37,775 creating build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:37,777 copying biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:37,780 copying biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:37,784 creating build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:37,786 copying biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:37,789 copying biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:37,793 creating build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:37,795 copying biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:37,798 copying biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:37,803 creating build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,804 copying biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,807 copying biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,811 copying biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,814 copying biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,817 copying biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/lib/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:37,821 creating build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:37,823 copying biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:37,826 copying biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:37,831 creating build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:37,832 copying biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:37,835 copying biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:37,838 copying biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/lib/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:37,843 creating build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:37,844 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:37,847 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:37,850 copying biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:37,855 creating build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:37,856 copying biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:37,859 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:37,862 copying biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/lib/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:37,867 creating build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:37,868 copying biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:37,871 copying biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:37,876 creating build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:37,877 copying biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:37,880 copying biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:37,883 copying biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/lib/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:37,890 creating build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,891 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,895 copying biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,897 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,901 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,904 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,907 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,910 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,913 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,917 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,920 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,923 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,927 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,930 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,933 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,936 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,940 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,943 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,946 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,949 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,953 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,956 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,959 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,963 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,966 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,969 copying biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:37,975 creating build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,977 copying biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,979 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,983 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,986 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,989 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,993 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,996 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:37,999 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,003 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,006 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,009 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,012 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,016 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,019 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,022 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,025 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,028 copying biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:38,033 creating build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:38,034 copying biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:38,037 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:38,041 copying biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/lib/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:38,045 creating build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,047 copying biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,050 copying biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,053 copying biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,056 copying biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,059 copying biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/lib/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:38,064 creating build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,066 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,069 copying biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,072 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,075 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,078 copying biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/lib/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:38,083 running egg_info 2022-12-02T09:21:38,232 writing biobb_adapters.egg-info/PKG-INFO 2022-12-02T09:21:38,236 writing dependency_links to biobb_adapters.egg-info/dependency_links.txt 2022-12-02T09:21:38,241 writing requirements to biobb_adapters.egg-info/requires.txt 2022-12-02T09:21:38,243 writing top-level names to biobb_adapters.egg-info/top_level.txt 2022-12-02T09:21:38,396 reading manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2022-12-02T09:21:38,443 reading manifest template 'MANIFEST.in' 2022-12-02T09:21:38,964 writing manifest file 'biobb_adapters.egg-info/SOURCES.txt' 2022-12-02T09:21:38,971 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:38,971 !! 2022-12-02T09:21:38,972 ############################ 2022-12-02T09:21:38,973 # Package would be ignored # 2022-12-02T09:21:38,973 ############################ 2022-12-02T09:21:38,973 Python recognizes 'biobb_adapters.cwl.biobb_amber' as an importable package, 2022-12-02T09:21:38,974 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:38,974 'biobb_adapters.cwl.biobb_amber' has been automatically added to the distribution only 2022-12-02T09:21:38,974 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:38,975 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:38,975 Please make sure that 'biobb_adapters.cwl.biobb_amber' is included as a package by using 2022-12-02T09:21:38,976 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:38,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:38,976 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:38,977 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:38,977 documentation page. 2022-12-02T09:21:38,978 !! 2022-12-02T09:21:38,979 check.warn(importable) 2022-12-02T09:21:38,979 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.ambpdb' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:38,980 !! 2022-12-02T09:21:38,980 ############################ 2022-12-02T09:21:38,981 # Package would be ignored # 2022-12-02T09:21:38,981 ############################ 2022-12-02T09:21:38,981 Python recognizes 'biobb_adapters.cwl.biobb_amber.ambpdb' as an importable package, 2022-12-02T09:21:38,982 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:38,982 'biobb_adapters.cwl.biobb_amber.ambpdb' has been automatically added to the distribution only 2022-12-02T09:21:38,982 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:38,983 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:38,983 Please make sure that 'biobb_adapters.cwl.biobb_amber.ambpdb' is included as a package by using 2022-12-02T09:21:38,984 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:38,984 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:38,984 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:38,985 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:38,985 documentation page. 2022-12-02T09:21:38,986 !! 2022-12-02T09:21:38,986 check.warn(importable) 2022-12-02T09:21:38,987 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.cpptraj' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:38,987 !! 2022-12-02T09:21:38,988 ############################ 2022-12-02T09:21:38,988 # Package would be ignored # 2022-12-02T09:21:38,988 ############################ 2022-12-02T09:21:38,989 Python recognizes 'biobb_adapters.cwl.biobb_amber.cpptraj' as an importable package, 2022-12-02T09:21:38,989 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:38,990 'biobb_adapters.cwl.biobb_amber.cpptraj' has been automatically added to the distribution only 2022-12-02T09:21:38,990 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:38,990 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:38,991 Please make sure that 'biobb_adapters.cwl.biobb_amber.cpptraj' is included as a package by using 2022-12-02T09:21:38,991 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:38,991 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:38,992 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:38,992 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:38,993 documentation page. 2022-12-02T09:21:38,994 !! 2022-12-02T09:21:38,994 check.warn(importable) 2022-12-02T09:21:38,994 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.leap' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:38,995 !! 2022-12-02T09:21:38,996 ############################ 2022-12-02T09:21:38,996 # Package would be ignored # 2022-12-02T09:21:38,996 ############################ 2022-12-02T09:21:38,996 Python recognizes 'biobb_adapters.cwl.biobb_amber.leap' as an importable package, 2022-12-02T09:21:38,997 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:38,997 'biobb_adapters.cwl.biobb_amber.leap' has been automatically added to the distribution only 2022-12-02T09:21:38,997 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:38,998 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:38,998 Please make sure that 'biobb_adapters.cwl.biobb_amber.leap' is included as a package by using 2022-12-02T09:21:38,999 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:38,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:38,999 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,000 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,000 documentation page. 2022-12-02T09:21:39,001 !! 2022-12-02T09:21:39,002 check.warn(importable) 2022-12-02T09:21:39,002 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.nap' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,002 !! 2022-12-02T09:21:39,003 ############################ 2022-12-02T09:21:39,003 # Package would be ignored # 2022-12-02T09:21:39,004 ############################ 2022-12-02T09:21:39,004 Python recognizes 'biobb_adapters.cwl.biobb_amber.nap' as an importable package, 2022-12-02T09:21:39,004 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,005 'biobb_adapters.cwl.biobb_amber.nap' has been automatically added to the distribution only 2022-12-02T09:21:39,005 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,005 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,006 Please make sure that 'biobb_adapters.cwl.biobb_amber.nap' is included as a package by using 2022-12-02T09:21:39,006 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,006 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,007 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,007 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,008 documentation page. 2022-12-02T09:21:39,008 !! 2022-12-02T09:21:39,009 check.warn(importable) 2022-12-02T09:21:39,009 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.parmed' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,010 !! 2022-12-02T09:21:39,010 ############################ 2022-12-02T09:21:39,011 # Package would be ignored # 2022-12-02T09:21:39,011 ############################ 2022-12-02T09:21:39,011 Python recognizes 'biobb_adapters.cwl.biobb_amber.parmed' as an importable package, 2022-12-02T09:21:39,012 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,012 'biobb_adapters.cwl.biobb_amber.parmed' has been automatically added to the distribution only 2022-12-02T09:21:39,012 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,013 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,013 Please make sure that 'biobb_adapters.cwl.biobb_amber.parmed' is included as a package by using 2022-12-02T09:21:39,014 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,014 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,014 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,015 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,015 documentation page. 2022-12-02T09:21:39,016 !! 2022-12-02T09:21:39,016 check.warn(importable) 2022-12-02T09:21:39,017 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pdb4amber' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,017 !! 2022-12-02T09:21:39,018 ############################ 2022-12-02T09:21:39,018 # Package would be ignored # 2022-12-02T09:21:39,018 ############################ 2022-12-02T09:21:39,019 Python recognizes 'biobb_adapters.cwl.biobb_amber.pdb4amber' as an importable package, 2022-12-02T09:21:39,019 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,020 'biobb_adapters.cwl.biobb_amber.pdb4amber' has been automatically added to the distribution only 2022-12-02T09:21:39,020 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,020 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,021 Please make sure that 'biobb_adapters.cwl.biobb_amber.pdb4amber' is included as a package by using 2022-12-02T09:21:39,021 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,021 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,022 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,022 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,022 documentation page. 2022-12-02T09:21:39,023 !! 2022-12-02T09:21:39,024 check.warn(importable) 2022-12-02T09:21:39,024 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.pmemd' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,025 !! 2022-12-02T09:21:39,025 ############################ 2022-12-02T09:21:39,026 # Package would be ignored # 2022-12-02T09:21:39,026 ############################ 2022-12-02T09:21:39,026 Python recognizes 'biobb_adapters.cwl.biobb_amber.pmemd' as an importable package, 2022-12-02T09:21:39,027 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,027 'biobb_adapters.cwl.biobb_amber.pmemd' has been automatically added to the distribution only 2022-12-02T09:21:39,028 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,028 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,028 Please make sure that 'biobb_adapters.cwl.biobb_amber.pmemd' is included as a package by using 2022-12-02T09:21:39,029 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,029 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,029 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,030 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,030 documentation page. 2022-12-02T09:21:39,031 !! 2022-12-02T09:21:39,032 check.warn(importable) 2022-12-02T09:21:39,032 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.process' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,032 !! 2022-12-02T09:21:39,033 ############################ 2022-12-02T09:21:39,033 # Package would be ignored # 2022-12-02T09:21:39,034 ############################ 2022-12-02T09:21:39,034 Python recognizes 'biobb_adapters.cwl.biobb_amber.process' as an importable package, 2022-12-02T09:21:39,034 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,035 'biobb_adapters.cwl.biobb_amber.process' has been automatically added to the distribution only 2022-12-02T09:21:39,035 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,035 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,036 Please make sure that 'biobb_adapters.cwl.biobb_amber.process' is included as a package by using 2022-12-02T09:21:39,036 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,036 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,037 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,037 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,038 documentation page. 2022-12-02T09:21:39,038 !! 2022-12-02T09:21:39,039 check.warn(importable) 2022-12-02T09:21:39,039 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_amber.sander' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,040 !! 2022-12-02T09:21:39,040 ############################ 2022-12-02T09:21:39,041 # Package would be ignored # 2022-12-02T09:21:39,041 ############################ 2022-12-02T09:21:39,041 Python recognizes 'biobb_adapters.cwl.biobb_amber.sander' as an importable package, 2022-12-02T09:21:39,042 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,042 'biobb_adapters.cwl.biobb_amber.sander' has been automatically added to the distribution only 2022-12-02T09:21:39,042 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,043 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,043 Please make sure that 'biobb_adapters.cwl.biobb_amber.sander' is included as a package by using 2022-12-02T09:21:39,044 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,044 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,045 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,045 documentation page. 2022-12-02T09:21:39,046 !! 2022-12-02T09:21:39,046 check.warn(importable) 2022-12-02T09:21:39,047 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,047 !! 2022-12-02T09:21:39,048 ############################ 2022-12-02T09:21:39,048 # Package would be ignored # 2022-12-02T09:21:39,048 ############################ 2022-12-02T09:21:39,049 Python recognizes 'biobb_adapters.cwl.biobb_analysis' as an importable package, 2022-12-02T09:21:39,049 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,049 'biobb_adapters.cwl.biobb_analysis' has been automatically added to the distribution only 2022-12-02T09:21:39,050 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,050 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,051 Please make sure that 'biobb_adapters.cwl.biobb_analysis' is included as a package by using 2022-12-02T09:21:39,051 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,051 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,051 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,052 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,052 documentation page. 2022-12-02T09:21:39,053 !! 2022-12-02T09:21:39,054 check.warn(importable) 2022-12-02T09:21:39,054 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,054 !! 2022-12-02T09:21:39,055 ############################ 2022-12-02T09:21:39,055 # Package would be ignored # 2022-12-02T09:21:39,056 ############################ 2022-12-02T09:21:39,056 Python recognizes 'biobb_adapters.cwl.biobb_analysis.ambertools' as an importable package, 2022-12-02T09:21:39,056 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,057 'biobb_adapters.cwl.biobb_analysis.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,057 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,057 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,058 Please make sure that 'biobb_adapters.cwl.biobb_analysis.ambertools' is included as a package by using 2022-12-02T09:21:39,058 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,058 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,059 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,059 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,059 documentation page. 2022-12-02T09:21:39,060 !! 2022-12-02T09:21:39,061 check.warn(importable) 2022-12-02T09:21:39,061 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,061 !! 2022-12-02T09:21:39,062 ############################ 2022-12-02T09:21:39,063 # Package would be ignored # 2022-12-02T09:21:39,063 ############################ 2022-12-02T09:21:39,063 Python recognizes 'biobb_adapters.cwl.biobb_analysis.gromacs' as an importable package, 2022-12-02T09:21:39,063 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,064 'biobb_adapters.cwl.biobb_analysis.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,064 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,065 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,065 Please make sure that 'biobb_adapters.cwl.biobb_analysis.gromacs' is included as a package by using 2022-12-02T09:21:39,065 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,066 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,067 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,067 documentation page. 2022-12-02T09:21:39,068 !! 2022-12-02T09:21:39,068 check.warn(importable) 2022-12-02T09:21:39,068 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,069 !! 2022-12-02T09:21:39,070 ############################ 2022-12-02T09:21:39,070 # Package would be ignored # 2022-12-02T09:21:39,070 ############################ 2022-12-02T09:21:39,070 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test' as an importable package, 2022-12-02T09:21:39,071 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,071 'biobb_adapters.cwl.biobb_analysis.test' has been automatically added to the distribution only 2022-12-02T09:21:39,072 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,072 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,072 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test' is included as a package by using 2022-12-02T09:21:39,073 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,073 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,074 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,074 documentation page. 2022-12-02T09:21:39,075 !! 2022-12-02T09:21:39,075 check.warn(importable) 2022-12-02T09:21:39,076 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,076 !! 2022-12-02T09:21:39,077 ############################ 2022-12-02T09:21:39,078 # Package would be ignored # 2022-12-02T09:21:39,078 ############################ 2022-12-02T09:21:39,078 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.ambertools' as an importable package, 2022-12-02T09:21:39,078 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,079 'biobb_adapters.cwl.biobb_analysis.test.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,079 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,080 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,080 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.ambertools' is included as a package by using 2022-12-02T09:21:39,080 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,081 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,082 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,082 documentation page. 2022-12-02T09:21:39,083 !! 2022-12-02T09:21:39,083 check.warn(importable) 2022-12-02T09:21:39,083 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,084 !! 2022-12-02T09:21:39,085 ############################ 2022-12-02T09:21:39,085 # Package would be ignored # 2022-12-02T09:21:39,085 ############################ 2022-12-02T09:21:39,085 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' as an importable package, 2022-12-02T09:21:39,086 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,086 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,087 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,087 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,087 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.ambertools' is included as a package by using 2022-12-02T09:21:39,088 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,088 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,088 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,089 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,089 documentation page. 2022-12-02T09:21:39,090 !! 2022-12-02T09:21:39,090 check.warn(importable) 2022-12-02T09:21:39,091 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,091 !! 2022-12-02T09:21:39,092 ############################ 2022-12-02T09:21:39,092 # Package would be ignored # 2022-12-02T09:21:39,092 ############################ 2022-12-02T09:21:39,093 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' as an importable package, 2022-12-02T09:21:39,093 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,094 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,094 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,094 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,095 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.data.gromacs' is included as a package by using 2022-12-02T09:21:39,095 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,095 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,096 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,096 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,096 documentation page. 2022-12-02T09:21:39,097 !! 2022-12-02T09:21:39,098 check.warn(importable) 2022-12-02T09:21:39,098 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,098 !! 2022-12-02T09:21:39,099 ############################ 2022-12-02T09:21:39,099 # Package would be ignored # 2022-12-02T09:21:39,100 ############################ 2022-12-02T09:21:39,100 Python recognizes 'biobb_adapters.cwl.biobb_analysis.test.gromacs' as an importable package, 2022-12-02T09:21:39,100 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,101 'biobb_adapters.cwl.biobb_analysis.test.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,101 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,102 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,102 Please make sure that 'biobb_adapters.cwl.biobb_analysis.test.gromacs' is included as a package by using 2022-12-02T09:21:39,102 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,103 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,103 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,103 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,104 documentation page. 2022-12-02T09:21:39,105 !! 2022-12-02T09:21:39,105 check.warn(importable) 2022-12-02T09:21:39,105 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,106 !! 2022-12-02T09:21:39,107 ############################ 2022-12-02T09:21:39,107 # Package would be ignored # 2022-12-02T09:21:39,107 ############################ 2022-12-02T09:21:39,107 Python recognizes 'biobb_adapters.cwl.biobb_chemistry' as an importable package, 2022-12-02T09:21:39,108 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,108 'biobb_adapters.cwl.biobb_chemistry' has been automatically added to the distribution only 2022-12-02T09:21:39,108 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,109 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,109 Please make sure that 'biobb_adapters.cwl.biobb_chemistry' is included as a package by using 2022-12-02T09:21:39,110 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,110 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,110 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,111 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,111 documentation page. 2022-12-02T09:21:39,112 !! 2022-12-02T09:21:39,112 check.warn(importable) 2022-12-02T09:21:39,113 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.acpype' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,113 !! 2022-12-02T09:21:39,114 ############################ 2022-12-02T09:21:39,114 # Package would be ignored # 2022-12-02T09:21:39,114 ############################ 2022-12-02T09:21:39,115 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.acpype' as an importable package, 2022-12-02T09:21:39,115 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,115 'biobb_adapters.cwl.biobb_chemistry.acpype' has been automatically added to the distribution only 2022-12-02T09:21:39,116 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,116 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,117 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.acpype' is included as a package by using 2022-12-02T09:21:39,117 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,117 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,117 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,118 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,118 documentation page. 2022-12-02T09:21:39,119 !! 2022-12-02T09:21:39,120 check.warn(importable) 2022-12-02T09:21:39,120 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,120 !! 2022-12-02T09:21:39,121 ############################ 2022-12-02T09:21:39,121 # Package would be ignored # 2022-12-02T09:21:39,122 ############################ 2022-12-02T09:21:39,122 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.ambertools' as an importable package, 2022-12-02T09:21:39,122 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,123 'biobb_adapters.cwl.biobb_chemistry.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,123 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,123 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,124 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.ambertools' is included as a package by using 2022-12-02T09:21:39,124 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,125 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,125 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,125 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,126 documentation page. 2022-12-02T09:21:39,127 !! 2022-12-02T09:21:39,127 check.warn(importable) 2022-12-02T09:21:39,128 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.babelm' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,128 !! 2022-12-02T09:21:39,129 ############################ 2022-12-02T09:21:39,129 # Package would be ignored # 2022-12-02T09:21:39,129 ############################ 2022-12-02T09:21:39,130 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.babelm' as an importable package, 2022-12-02T09:21:39,130 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,131 'biobb_adapters.cwl.biobb_chemistry.babelm' has been automatically added to the distribution only 2022-12-02T09:21:39,131 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,131 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,132 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.babelm' is included as a package by using 2022-12-02T09:21:39,132 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,132 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,133 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,133 documentation page. 2022-12-02T09:21:39,134 !! 2022-12-02T09:21:39,135 check.warn(importable) 2022-12-02T09:21:39,135 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,135 !! 2022-12-02T09:21:39,136 ############################ 2022-12-02T09:21:39,136 # Package would be ignored # 2022-12-02T09:21:39,137 ############################ 2022-12-02T09:21:39,137 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test' as an importable package, 2022-12-02T09:21:39,137 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,138 'biobb_adapters.cwl.biobb_chemistry.test' has been automatically added to the distribution only 2022-12-02T09:21:39,138 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,138 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,139 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test' is included as a package by using 2022-12-02T09:21:39,139 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,139 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,140 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,140 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,141 documentation page. 2022-12-02T09:21:39,141 !! 2022-12-02T09:21:39,142 check.warn(importable) 2022-12-02T09:21:39,142 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,143 !! 2022-12-02T09:21:39,143 ############################ 2022-12-02T09:21:39,144 # Package would be ignored # 2022-12-02T09:21:39,144 ############################ 2022-12-02T09:21:39,144 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.acpype' as an importable package, 2022-12-02T09:21:39,145 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,145 'biobb_adapters.cwl.biobb_chemistry.test.acpype' has been automatically added to the distribution only 2022-12-02T09:21:39,145 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,146 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,146 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.acpype' is included as a package by using 2022-12-02T09:21:39,146 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,147 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,148 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,148 documentation page. 2022-12-02T09:21:39,149 !! 2022-12-02T09:21:39,149 check.warn(importable) 2022-12-02T09:21:39,149 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,150 !! 2022-12-02T09:21:39,151 ############################ 2022-12-02T09:21:39,151 # Package would be ignored # 2022-12-02T09:21:39,151 ############################ 2022-12-02T09:21:39,151 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' as an importable package, 2022-12-02T09:21:39,152 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,152 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,153 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,153 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,153 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.ambertools' is included as a package by using 2022-12-02T09:21:39,154 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,154 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,154 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,155 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,155 documentation page. 2022-12-02T09:21:39,156 !! 2022-12-02T09:21:39,156 check.warn(importable) 2022-12-02T09:21:39,157 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,157 !! 2022-12-02T09:21:39,158 ############################ 2022-12-02T09:21:39,158 # Package would be ignored # 2022-12-02T09:21:39,158 ############################ 2022-12-02T09:21:39,159 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.babelm' as an importable package, 2022-12-02T09:21:39,159 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,159 'biobb_adapters.cwl.biobb_chemistry.test.babelm' has been automatically added to the distribution only 2022-12-02T09:21:39,160 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,160 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,161 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.babelm' is included as a package by using 2022-12-02T09:21:39,161 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,161 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,161 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,162 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,162 documentation page. 2022-12-02T09:21:39,163 !! 2022-12-02T09:21:39,164 check.warn(importable) 2022-12-02T09:21:39,164 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,164 !! 2022-12-02T09:21:39,165 ############################ 2022-12-02T09:21:39,165 # Package would be ignored # 2022-12-02T09:21:39,166 ############################ 2022-12-02T09:21:39,166 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' as an importable package, 2022-12-02T09:21:39,166 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,167 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' has been automatically added to the distribution only 2022-12-02T09:21:39,167 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,167 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,168 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.acpype' is included as a package by using 2022-12-02T09:21:39,168 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,168 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,169 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,169 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,169 documentation page. 2022-12-02T09:21:39,170 !! 2022-12-02T09:21:39,171 check.warn(importable) 2022-12-02T09:21:39,171 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,171 !! 2022-12-02T09:21:39,172 ############################ 2022-12-02T09:21:39,173 # Package would be ignored # 2022-12-02T09:21:39,173 ############################ 2022-12-02T09:21:39,173 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' as an importable package, 2022-12-02T09:21:39,173 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,174 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' has been automatically added to the distribution only 2022-12-02T09:21:39,174 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,175 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,175 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.ambertools' is included as a package by using 2022-12-02T09:21:39,176 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,176 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,176 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,177 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,177 documentation page. 2022-12-02T09:21:39,178 !! 2022-12-02T09:21:39,179 check.warn(importable) 2022-12-02T09:21:39,179 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,179 !! 2022-12-02T09:21:39,180 ############################ 2022-12-02T09:21:39,180 # Package would be ignored # 2022-12-02T09:21:39,181 ############################ 2022-12-02T09:21:39,181 Python recognizes 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' as an importable package, 2022-12-02T09:21:39,181 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,182 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' has been automatically added to the distribution only 2022-12-02T09:21:39,182 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,182 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,183 Please make sure that 'biobb_adapters.cwl.biobb_chemistry.test.data.babelm' is included as a package by using 2022-12-02T09:21:39,183 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,184 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,184 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,184 documentation page. 2022-12-02T09:21:39,185 !! 2022-12-02T09:21:39,186 check.warn(importable) 2022-12-02T09:21:39,186 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_cmip' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,186 !! 2022-12-02T09:21:39,187 ############################ 2022-12-02T09:21:39,187 # Package would be ignored # 2022-12-02T09:21:39,188 ############################ 2022-12-02T09:21:39,188 Python recognizes 'biobb_adapters.cwl.biobb_cmip' as an importable package, 2022-12-02T09:21:39,188 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,189 'biobb_adapters.cwl.biobb_cmip' has been automatically added to the distribution only 2022-12-02T09:21:39,189 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,189 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,190 Please make sure that 'biobb_adapters.cwl.biobb_cmip' is included as a package by using 2022-12-02T09:21:39,190 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,191 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,191 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,192 documentation page. 2022-12-02T09:21:39,193 !! 2022-12-02T09:21:39,193 check.warn(importable) 2022-12-02T09:21:39,194 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_dna' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,194 !! 2022-12-02T09:21:39,195 ############################ 2022-12-02T09:21:39,195 # Package would be ignored # 2022-12-02T09:21:39,195 ############################ 2022-12-02T09:21:39,196 Python recognizes 'biobb_adapters.cwl.biobb_dna' as an importable package, 2022-12-02T09:21:39,196 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,197 'biobb_adapters.cwl.biobb_dna' has been automatically added to the distribution only 2022-12-02T09:21:39,197 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,197 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,198 Please make sure that 'biobb_adapters.cwl.biobb_dna' is included as a package by using 2022-12-02T09:21:39,198 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,198 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,199 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,199 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,200 documentation page. 2022-12-02T09:21:39,201 !! 2022-12-02T09:21:39,201 check.warn(importable) 2022-12-02T09:21:39,201 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,202 !! 2022-12-02T09:21:39,203 ############################ 2022-12-02T09:21:39,203 # Package would be ignored # 2022-12-02T09:21:39,203 ############################ 2022-12-02T09:21:39,204 Python recognizes 'biobb_adapters.cwl.biobb_gromacs' as an importable package, 2022-12-02T09:21:39,204 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,204 'biobb_adapters.cwl.biobb_gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,205 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,205 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,206 Please make sure that 'biobb_adapters.cwl.biobb_gromacs' is included as a package by using 2022-12-02T09:21:39,206 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,207 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,207 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,207 documentation page. 2022-12-02T09:21:39,208 !! 2022-12-02T09:21:39,209 check.warn(importable) 2022-12-02T09:21:39,209 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,210 !! 2022-12-02T09:21:39,210 ############################ 2022-12-02T09:21:39,211 # Package would be ignored # 2022-12-02T09:21:39,211 ############################ 2022-12-02T09:21:39,211 Python recognizes 'biobb_adapters.cwl.biobb_io' as an importable package, 2022-12-02T09:21:39,212 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,212 'biobb_adapters.cwl.biobb_io' has been automatically added to the distribution only 2022-12-02T09:21:39,213 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,213 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,214 Please make sure that 'biobb_adapters.cwl.biobb_io' is included as a package by using 2022-12-02T09:21:39,214 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,214 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,214 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,215 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,215 documentation page. 2022-12-02T09:21:39,216 !! 2022-12-02T09:21:39,217 check.warn(importable) 2022-12-02T09:21:39,217 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_io.mmb_api' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,217 !! 2022-12-02T09:21:39,218 ############################ 2022-12-02T09:21:39,219 # Package would be ignored # 2022-12-02T09:21:39,219 ############################ 2022-12-02T09:21:39,219 Python recognizes 'biobb_adapters.cwl.biobb_io.mmb_api' as an importable package, 2022-12-02T09:21:39,220 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,220 'biobb_adapters.cwl.biobb_io.mmb_api' has been automatically added to the distribution only 2022-12-02T09:21:39,221 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,221 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,221 Please make sure that 'biobb_adapters.cwl.biobb_io.mmb_api' is included as a package by using 2022-12-02T09:21:39,222 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,222 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,223 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,223 documentation page. 2022-12-02T09:21:39,224 !! 2022-12-02T09:21:39,225 check.warn(importable) 2022-12-02T09:21:39,225 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,225 !! 2022-12-02T09:21:39,226 ############################ 2022-12-02T09:21:39,227 # Package would be ignored # 2022-12-02T09:21:39,227 ############################ 2022-12-02T09:21:39,227 Python recognizes 'biobb_adapters.cwl.biobb_md' as an importable package, 2022-12-02T09:21:39,228 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,228 'biobb_adapters.cwl.biobb_md' has been automatically added to the distribution only 2022-12-02T09:21:39,229 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,229 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,230 Please make sure that 'biobb_adapters.cwl.biobb_md' is included as a package by using 2022-12-02T09:21:39,230 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,231 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,231 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,232 documentation page. 2022-12-02T09:21:39,233 !! 2022-12-02T09:21:39,233 check.warn(importable) 2022-12-02T09:21:39,234 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,234 !! 2022-12-02T09:21:39,235 ############################ 2022-12-02T09:21:39,235 # Package would be ignored # 2022-12-02T09:21:39,235 ############################ 2022-12-02T09:21:39,236 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs' as an importable package, 2022-12-02T09:21:39,236 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,237 'biobb_adapters.cwl.biobb_md.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,237 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,237 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,238 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs' is included as a package by using 2022-12-02T09:21:39,238 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,238 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,239 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,239 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,240 documentation page. 2022-12-02T09:21:39,241 !! 2022-12-02T09:21:39,241 check.warn(importable) 2022-12-02T09:21:39,241 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,242 !! 2022-12-02T09:21:39,243 ############################ 2022-12-02T09:21:39,243 # Package would be ignored # 2022-12-02T09:21:39,243 ############################ 2022-12-02T09:21:39,244 Python recognizes 'biobb_adapters.cwl.biobb_md.gromacs_extra' as an importable package, 2022-12-02T09:21:39,244 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,244 'biobb_adapters.cwl.biobb_md.gromacs_extra' has been automatically added to the distribution only 2022-12-02T09:21:39,245 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,245 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,246 Please make sure that 'biobb_adapters.cwl.biobb_md.gromacs_extra' is included as a package by using 2022-12-02T09:21:39,246 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,246 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,247 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,247 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,247 documentation page. 2022-12-02T09:21:39,248 !! 2022-12-02T09:21:39,249 check.warn(importable) 2022-12-02T09:21:39,249 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,250 !! 2022-12-02T09:21:39,251 ############################ 2022-12-02T09:21:39,251 # Package would be ignored # 2022-12-02T09:21:39,251 ############################ 2022-12-02T09:21:39,251 Python recognizes 'biobb_adapters.cwl.biobb_md.test' as an importable package, 2022-12-02T09:21:39,252 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,252 'biobb_adapters.cwl.biobb_md.test' has been automatically added to the distribution only 2022-12-02T09:21:39,253 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,253 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,254 Please make sure that 'biobb_adapters.cwl.biobb_md.test' is included as a package by using 2022-12-02T09:21:39,254 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,254 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,255 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,255 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,255 documentation page. 2022-12-02T09:21:39,256 !! 2022-12-02T09:21:39,257 check.warn(importable) 2022-12-02T09:21:39,257 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,258 !! 2022-12-02T09:21:39,258 ############################ 2022-12-02T09:21:39,259 # Package would be ignored # 2022-12-02T09:21:39,259 ############################ 2022-12-02T09:21:39,259 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs' as an importable package, 2022-12-02T09:21:39,260 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,260 'biobb_adapters.cwl.biobb_md.test.data.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,261 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,261 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,262 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs' is included as a package by using 2022-12-02T09:21:39,262 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,262 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,262 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,263 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,263 documentation page. 2022-12-02T09:21:39,264 !! 2022-12-02T09:21:39,265 check.warn(importable) 2022-12-02T09:21:39,265 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,265 !! 2022-12-02T09:21:39,266 ############################ 2022-12-02T09:21:39,267 # Package would be ignored # 2022-12-02T09:21:39,267 ############################ 2022-12-02T09:21:39,267 Python recognizes 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' as an importable package, 2022-12-02T09:21:39,268 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,268 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' has been automatically added to the distribution only 2022-12-02T09:21:39,269 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,269 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,269 Please make sure that 'biobb_adapters.cwl.biobb_md.test.data.gromacs_extra' is included as a package by using 2022-12-02T09:21:39,270 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,270 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,270 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,271 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,271 documentation page. 2022-12-02T09:21:39,272 !! 2022-12-02T09:21:39,273 check.warn(importable) 2022-12-02T09:21:39,273 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,273 !! 2022-12-02T09:21:39,274 ############################ 2022-12-02T09:21:39,275 # Package would be ignored # 2022-12-02T09:21:39,275 ############################ 2022-12-02T09:21:39,275 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs' as an importable package, 2022-12-02T09:21:39,276 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,276 'biobb_adapters.cwl.biobb_md.test.gromacs' has been automatically added to the distribution only 2022-12-02T09:21:39,277 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,277 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,278 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs' is included as a package by using 2022-12-02T09:21:39,278 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,278 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,279 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,279 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,280 documentation page. 2022-12-02T09:21:39,281 !! 2022-12-02T09:21:39,281 check.warn(importable) 2022-12-02T09:21:39,281 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,282 !! 2022-12-02T09:21:39,283 ############################ 2022-12-02T09:21:39,283 # Package would be ignored # 2022-12-02T09:21:39,283 ############################ 2022-12-02T09:21:39,284 Python recognizes 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' as an importable package, 2022-12-02T09:21:39,284 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,284 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' has been automatically added to the distribution only 2022-12-02T09:21:39,285 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,285 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,286 Please make sure that 'biobb_adapters.cwl.biobb_md.test.gromacs_extra' is included as a package by using 2022-12-02T09:21:39,286 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,287 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,287 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,288 documentation page. 2022-12-02T09:21:39,289 !! 2022-12-02T09:21:39,289 check.warn(importable) 2022-12-02T09:21:39,290 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,290 !! 2022-12-02T09:21:39,291 ############################ 2022-12-02T09:21:39,291 # Package would be ignored # 2022-12-02T09:21:39,291 ############################ 2022-12-02T09:21:39,292 Python recognizes 'biobb_adapters.cwl.biobb_ml' as an importable package, 2022-12-02T09:21:39,292 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,293 'biobb_adapters.cwl.biobb_ml' has been automatically added to the distribution only 2022-12-02T09:21:39,293 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,293 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,294 Please make sure that 'biobb_adapters.cwl.biobb_ml' is included as a package by using 2022-12-02T09:21:39,294 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,295 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,295 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,295 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,296 documentation page. 2022-12-02T09:21:39,297 !! 2022-12-02T09:21:39,297 check.warn(importable) 2022-12-02T09:21:39,298 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.classification' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,298 !! 2022-12-02T09:21:39,299 ############################ 2022-12-02T09:21:39,299 # Package would be ignored # 2022-12-02T09:21:39,299 ############################ 2022-12-02T09:21:39,300 Python recognizes 'biobb_adapters.cwl.biobb_ml.classification' as an importable package, 2022-12-02T09:21:39,300 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,301 'biobb_adapters.cwl.biobb_ml.classification' has been automatically added to the distribution only 2022-12-02T09:21:39,301 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,301 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,302 Please make sure that 'biobb_adapters.cwl.biobb_ml.classification' is included as a package by using 2022-12-02T09:21:39,302 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,303 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,303 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,303 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,304 documentation page. 2022-12-02T09:21:39,305 !! 2022-12-02T09:21:39,305 check.warn(importable) 2022-12-02T09:21:39,306 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.clustering' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,306 !! 2022-12-02T09:21:39,307 ############################ 2022-12-02T09:21:39,307 # Package would be ignored # 2022-12-02T09:21:39,307 ############################ 2022-12-02T09:21:39,308 Python recognizes 'biobb_adapters.cwl.biobb_ml.clustering' as an importable package, 2022-12-02T09:21:39,308 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,309 'biobb_adapters.cwl.biobb_ml.clustering' has been automatically added to the distribution only 2022-12-02T09:21:39,309 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,309 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,310 Please make sure that 'biobb_adapters.cwl.biobb_ml.clustering' is included as a package by using 2022-12-02T09:21:39,310 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,310 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,311 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,311 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,312 documentation page. 2022-12-02T09:21:39,313 !! 2022-12-02T09:21:39,313 check.warn(importable) 2022-12-02T09:21:39,314 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,314 !! 2022-12-02T09:21:39,315 ############################ 2022-12-02T09:21:39,315 # Package would be ignored # 2022-12-02T09:21:39,315 ############################ 2022-12-02T09:21:39,316 Python recognizes 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' as an importable package, 2022-12-02T09:21:39,316 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,317 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' has been automatically added to the distribution only 2022-12-02T09:21:39,317 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,317 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,318 Please make sure that 'biobb_adapters.cwl.biobb_ml.dimensionality_reduction' is included as a package by using 2022-12-02T09:21:39,318 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,318 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,319 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,319 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,320 documentation page. 2022-12-02T09:21:39,321 !! 2022-12-02T09:21:39,321 check.warn(importable) 2022-12-02T09:21:39,321 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.neural_networks' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,322 !! 2022-12-02T09:21:39,323 ############################ 2022-12-02T09:21:39,323 # Package would be ignored # 2022-12-02T09:21:39,323 ############################ 2022-12-02T09:21:39,324 Python recognizes 'biobb_adapters.cwl.biobb_ml.neural_networks' as an importable package, 2022-12-02T09:21:39,324 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,325 'biobb_adapters.cwl.biobb_ml.neural_networks' has been automatically added to the distribution only 2022-12-02T09:21:39,325 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,325 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,326 Please make sure that 'biobb_adapters.cwl.biobb_ml.neural_networks' is included as a package by using 2022-12-02T09:21:39,326 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,326 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,327 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,328 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,328 documentation page. 2022-12-02T09:21:39,329 !! 2022-12-02T09:21:39,329 check.warn(importable) 2022-12-02T09:21:39,330 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.regression' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,330 !! 2022-12-02T09:21:39,331 ############################ 2022-12-02T09:21:39,331 # Package would be ignored # 2022-12-02T09:21:39,332 ############################ 2022-12-02T09:21:39,332 Python recognizes 'biobb_adapters.cwl.biobb_ml.regression' as an importable package, 2022-12-02T09:21:39,332 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,333 'biobb_adapters.cwl.biobb_ml.regression' has been automatically added to the distribution only 2022-12-02T09:21:39,333 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,334 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,334 Please make sure that 'biobb_adapters.cwl.biobb_ml.regression' is included as a package by using 2022-12-02T09:21:39,334 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,335 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,336 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,336 documentation page. 2022-12-02T09:21:39,337 !! 2022-12-02T09:21:39,338 check.warn(importable) 2022-12-02T09:21:39,338 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.resampling' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,338 !! 2022-12-02T09:21:39,339 ############################ 2022-12-02T09:21:39,339 # Package would be ignored # 2022-12-02T09:21:39,340 ############################ 2022-12-02T09:21:39,340 Python recognizes 'biobb_adapters.cwl.biobb_ml.resampling' as an importable package, 2022-12-02T09:21:39,340 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,341 'biobb_adapters.cwl.biobb_ml.resampling' has been automatically added to the distribution only 2022-12-02T09:21:39,341 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,342 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,342 Please make sure that 'biobb_adapters.cwl.biobb_ml.resampling' is included as a package by using 2022-12-02T09:21:39,343 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,343 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,343 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,344 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,344 documentation page. 2022-12-02T09:21:39,345 !! 2022-12-02T09:21:39,346 check.warn(importable) 2022-12-02T09:21:39,346 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_ml.utils' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,346 !! 2022-12-02T09:21:39,347 ############################ 2022-12-02T09:21:39,348 # Package would be ignored # 2022-12-02T09:21:39,348 ############################ 2022-12-02T09:21:39,348 Python recognizes 'biobb_adapters.cwl.biobb_ml.utils' as an importable package, 2022-12-02T09:21:39,349 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,349 'biobb_adapters.cwl.biobb_ml.utils' has been automatically added to the distribution only 2022-12-02T09:21:39,349 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,350 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,351 Please make sure that 'biobb_adapters.cwl.biobb_ml.utils' is included as a package by using 2022-12-02T09:21:39,351 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,351 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,351 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,352 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,352 documentation page. 2022-12-02T09:21:39,353 !! 2022-12-02T09:21:39,354 check.warn(importable) 2022-12-02T09:21:39,354 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,355 !! 2022-12-02T09:21:39,356 ############################ 2022-12-02T09:21:39,356 # Package would be ignored # 2022-12-02T09:21:39,356 ############################ 2022-12-02T09:21:39,356 Python recognizes 'biobb_adapters.cwl.biobb_model' as an importable package, 2022-12-02T09:21:39,357 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,357 'biobb_adapters.cwl.biobb_model' has been automatically added to the distribution only 2022-12-02T09:21:39,358 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,358 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,359 Please make sure that 'biobb_adapters.cwl.biobb_model' is included as a package by using 2022-12-02T09:21:39,359 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,359 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,360 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,360 documentation page. 2022-12-02T09:21:39,361 !! 2022-12-02T09:21:39,362 check.warn(importable) 2022-12-02T09:21:39,362 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.model' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,363 !! 2022-12-02T09:21:39,364 ############################ 2022-12-02T09:21:39,364 # Package would be ignored # 2022-12-02T09:21:39,364 ############################ 2022-12-02T09:21:39,364 Python recognizes 'biobb_adapters.cwl.biobb_model.model' as an importable package, 2022-12-02T09:21:39,365 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,365 'biobb_adapters.cwl.biobb_model.model' has been automatically added to the distribution only 2022-12-02T09:21:39,366 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,366 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,367 Please make sure that 'biobb_adapters.cwl.biobb_model.model' is included as a package by using 2022-12-02T09:21:39,367 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,368 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,368 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,368 documentation page. 2022-12-02T09:21:39,369 !! 2022-12-02T09:21:39,370 check.warn(importable) 2022-12-02T09:21:39,370 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,371 !! 2022-12-02T09:21:39,371 ############################ 2022-12-02T09:21:39,372 # Package would be ignored # 2022-12-02T09:21:39,372 ############################ 2022-12-02T09:21:39,372 Python recognizes 'biobb_adapters.cwl.biobb_model.test' as an importable package, 2022-12-02T09:21:39,373 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,373 'biobb_adapters.cwl.biobb_model.test' has been automatically added to the distribution only 2022-12-02T09:21:39,374 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,374 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,375 Please make sure that 'biobb_adapters.cwl.biobb_model.test' is included as a package by using 2022-12-02T09:21:39,375 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,375 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,375 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,376 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,376 documentation page. 2022-12-02T09:21:39,377 !! 2022-12-02T09:21:39,378 check.warn(importable) 2022-12-02T09:21:39,379 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.data.model' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,379 !! 2022-12-02T09:21:39,380 ############################ 2022-12-02T09:21:39,380 # Package would be ignored # 2022-12-02T09:21:39,380 ############################ 2022-12-02T09:21:39,381 Python recognizes 'biobb_adapters.cwl.biobb_model.test.data.model' as an importable package, 2022-12-02T09:21:39,381 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,382 'biobb_adapters.cwl.biobb_model.test.data.model' has been automatically added to the distribution only 2022-12-02T09:21:39,382 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,382 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,383 Please make sure that 'biobb_adapters.cwl.biobb_model.test.data.model' is included as a package by using 2022-12-02T09:21:39,383 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,384 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,384 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,384 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,385 documentation page. 2022-12-02T09:21:39,386 !! 2022-12-02T09:21:39,386 check.warn(importable) 2022-12-02T09:21:39,387 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_model.test.model' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,387 !! 2022-12-02T09:21:39,388 ############################ 2022-12-02T09:21:39,388 # Package would be ignored # 2022-12-02T09:21:39,388 ############################ 2022-12-02T09:21:39,389 Python recognizes 'biobb_adapters.cwl.biobb_model.test.model' as an importable package, 2022-12-02T09:21:39,389 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,390 'biobb_adapters.cwl.biobb_model.test.model' has been automatically added to the distribution only 2022-12-02T09:21:39,390 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,390 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,391 Please make sure that 'biobb_adapters.cwl.biobb_model.test.model' is included as a package by using 2022-12-02T09:21:39,391 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,391 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,392 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,392 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,393 documentation page. 2022-12-02T09:21:39,394 !! 2022-12-02T09:21:39,394 check.warn(importable) 2022-12-02T09:21:39,395 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,395 !! 2022-12-02T09:21:39,396 ############################ 2022-12-02T09:21:39,396 # Package would be ignored # 2022-12-02T09:21:39,396 ############################ 2022-12-02T09:21:39,397 Python recognizes 'biobb_adapters.cwl.biobb_pmx' as an importable package, 2022-12-02T09:21:39,397 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,398 'biobb_adapters.cwl.biobb_pmx' has been automatically added to the distribution only 2022-12-02T09:21:39,398 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,398 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,399 Please make sure that 'biobb_adapters.cwl.biobb_pmx' is included as a package by using 2022-12-02T09:21:39,399 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,400 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,400 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,401 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,401 documentation page. 2022-12-02T09:21:39,402 !! 2022-12-02T09:21:39,403 check.warn(importable) 2022-12-02T09:21:39,403 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_pmx.pmx' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,403 !! 2022-12-02T09:21:39,404 ############################ 2022-12-02T09:21:39,404 # Package would be ignored # 2022-12-02T09:21:39,405 ############################ 2022-12-02T09:21:39,405 Python recognizes 'biobb_adapters.cwl.biobb_pmx.pmx' as an importable package, 2022-12-02T09:21:39,405 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,406 'biobb_adapters.cwl.biobb_pmx.pmx' has been automatically added to the distribution only 2022-12-02T09:21:39,406 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,407 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,407 Please make sure that 'biobb_adapters.cwl.biobb_pmx.pmx' is included as a package by using 2022-12-02T09:21:39,407 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,408 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,408 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,409 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,409 documentation page. 2022-12-02T09:21:39,410 !! 2022-12-02T09:21:39,411 check.warn(importable) 2022-12-02T09:21:39,411 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,411 !! 2022-12-02T09:21:39,412 ############################ 2022-12-02T09:21:39,412 # Package would be ignored # 2022-12-02T09:21:39,413 ############################ 2022-12-02T09:21:39,413 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils' as an importable package, 2022-12-02T09:21:39,413 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,414 'biobb_adapters.cwl.biobb_structure_utils' has been automatically added to the distribution only 2022-12-02T09:21:39,414 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,415 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,415 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils' is included as a package by using 2022-12-02T09:21:39,416 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,416 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,416 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,417 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,417 documentation page. 2022-12-02T09:21:39,418 !! 2022-12-02T09:21:39,419 check.warn(importable) 2022-12-02T09:21:39,419 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,419 !! 2022-12-02T09:21:39,420 ############################ 2022-12-02T09:21:39,421 # Package would be ignored # 2022-12-02T09:21:39,421 ############################ 2022-12-02T09:21:39,421 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test' as an importable package, 2022-12-02T09:21:39,422 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,422 'biobb_adapters.cwl.biobb_structure_utils.test' has been automatically added to the distribution only 2022-12-02T09:21:39,422 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,423 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,423 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test' is included as a package by using 2022-12-02T09:21:39,424 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,424 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,425 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,425 documentation page. 2022-12-02T09:21:39,426 !! 2022-12-02T09:21:39,427 check.warn(importable) 2022-12-02T09:21:39,427 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.data' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,427 !! 2022-12-02T09:21:39,429 ############################ 2022-12-02T09:21:39,429 # Package would be ignored # 2022-12-02T09:21:39,429 ############################ 2022-12-02T09:21:39,429 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.data' as an importable package, 2022-12-02T09:21:39,430 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,430 'biobb_adapters.cwl.biobb_structure_utils.test.data' has been automatically added to the distribution only 2022-12-02T09:21:39,431 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,431 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,432 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.data' is included as a package by using 2022-12-02T09:21:39,432 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,432 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,433 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,433 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,433 documentation page. 2022-12-02T09:21:39,434 !! 2022-12-02T09:21:39,435 check.warn(importable) 2022-12-02T09:21:39,435 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,436 !! 2022-12-02T09:21:39,437 ############################ 2022-12-02T09:21:39,437 # Package would be ignored # 2022-12-02T09:21:39,437 ############################ 2022-12-02T09:21:39,438 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.test.utils' as an importable package, 2022-12-02T09:21:39,438 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,439 'biobb_adapters.cwl.biobb_structure_utils.test.utils' has been automatically added to the distribution only 2022-12-02T09:21:39,439 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,439 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,440 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.test.utils' is included as a package by using 2022-12-02T09:21:39,440 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,441 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,441 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,442 documentation page. 2022-12-02T09:21:39,443 !! 2022-12-02T09:21:39,443 check.warn(importable) 2022-12-02T09:21:39,444 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_structure_utils.utils' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,444 !! 2022-12-02T09:21:39,445 ############################ 2022-12-02T09:21:39,445 # Package would be ignored # 2022-12-02T09:21:39,445 ############################ 2022-12-02T09:21:39,446 Python recognizes 'biobb_adapters.cwl.biobb_structure_utils.utils' as an importable package, 2022-12-02T09:21:39,446 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,447 'biobb_adapters.cwl.biobb_structure_utils.utils' has been automatically added to the distribution only 2022-12-02T09:21:39,447 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,447 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,448 Please make sure that 'biobb_adapters.cwl.biobb_structure_utils.utils' is included as a package by using 2022-12-02T09:21:39,448 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,448 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,449 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,449 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,450 documentation page. 2022-12-02T09:21:39,451 !! 2022-12-02T09:21:39,451 check.warn(importable) 2022-12-02T09:21:39,452 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,452 !! 2022-12-02T09:21:39,453 ############################ 2022-12-02T09:21:39,453 # Package would be ignored # 2022-12-02T09:21:39,453 ############################ 2022-12-02T09:21:39,454 Python recognizes 'biobb_adapters.cwl.biobb_vs' as an importable package, 2022-12-02T09:21:39,454 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,455 'biobb_adapters.cwl.biobb_vs' has been automatically added to the distribution only 2022-12-02T09:21:39,455 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,455 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,456 Please make sure that 'biobb_adapters.cwl.biobb_vs' is included as a package by using 2022-12-02T09:21:39,456 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,457 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,458 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,458 documentation page. 2022-12-02T09:21:39,459 !! 2022-12-02T09:21:39,459 check.warn(importable) 2022-12-02T09:21:39,460 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.fpocket' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,460 !! 2022-12-02T09:21:39,461 ############################ 2022-12-02T09:21:39,461 # Package would be ignored # 2022-12-02T09:21:39,462 ############################ 2022-12-02T09:21:39,462 Python recognizes 'biobb_adapters.cwl.biobb_vs.fpocket' as an importable package, 2022-12-02T09:21:39,462 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,463 'biobb_adapters.cwl.biobb_vs.fpocket' has been automatically added to the distribution only 2022-12-02T09:21:39,463 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,464 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,464 Please make sure that 'biobb_adapters.cwl.biobb_vs.fpocket' is included as a package by using 2022-12-02T09:21:39,464 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,465 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,466 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,466 documentation page. 2022-12-02T09:21:39,467 !! 2022-12-02T09:21:39,468 check.warn(importable) 2022-12-02T09:21:39,468 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.utils' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,468 !! 2022-12-02T09:21:39,469 ############################ 2022-12-02T09:21:39,469 # Package would be ignored # 2022-12-02T09:21:39,470 ############################ 2022-12-02T09:21:39,470 Python recognizes 'biobb_adapters.cwl.biobb_vs.utils' as an importable package, 2022-12-02T09:21:39,470 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,471 'biobb_adapters.cwl.biobb_vs.utils' has been automatically added to the distribution only 2022-12-02T09:21:39,471 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,472 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,472 Please make sure that 'biobb_adapters.cwl.biobb_vs.utils' is included as a package by using 2022-12-02T09:21:39,472 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,473 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,473 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,474 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,474 documentation page. 2022-12-02T09:21:39,475 !! 2022-12-02T09:21:39,476 check.warn(importable) 2022-12-02T09:21:39,476 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_adapters.cwl.biobb_vs.vina' as data is deprecated, please list it in `packages`. 2022-12-02T09:21:39,476 !! 2022-12-02T09:21:39,477 ############################ 2022-12-02T09:21:39,477 # Package would be ignored # 2022-12-02T09:21:39,478 ############################ 2022-12-02T09:21:39,478 Python recognizes 'biobb_adapters.cwl.biobb_vs.vina' as an importable package, 2022-12-02T09:21:39,479 but it is not listed in the `packages` configuration of setuptools. 2022-12-02T09:21:39,479 'biobb_adapters.cwl.biobb_vs.vina' has been automatically added to the distribution only 2022-12-02T09:21:39,480 because it may contain data files, but this behavior is likely to change 2022-12-02T09:21:39,480 in future versions of setuptools (and therefore is considered deprecated). 2022-12-02T09:21:39,481 Please make sure that 'biobb_adapters.cwl.biobb_vs.vina' is included as a package by using 2022-12-02T09:21:39,481 the `packages` configuration field or the proper discovery methods 2022-12-02T09:21:39,481 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-02T09:21:39,481 instead of `find_packages(...)`/`find:`). 2022-12-02T09:21:39,482 You can read more about "package discovery" and "data files" on setuptools 2022-12-02T09:21:39,482 documentation page. 2022-12-02T09:21:39,483 !! 2022-12-02T09:21:39,484 check.warn(importable) 2022-12-02T09:21:39,484 creating build/lib/biobb_adapters/cwl 2022-12-02T09:21:39,485 creating build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,485 copying biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,485 copying biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,486 copying biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,486 copying biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,486 copying biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,486 copying biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,487 copying biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,487 copying biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,487 copying biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,488 copying biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,488 copying biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,488 copying biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,489 copying biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,489 copying biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,489 copying biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,490 copying biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:39,490 creating build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-02T09:21:39,490 copying biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-02T09:21:39,491 creating build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-02T09:21:39,491 copying biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-02T09:21:39,491 creating build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:39,491 copying biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:39,492 copying biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:39,492 copying biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:39,492 copying biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:39,493 creating build/lib/biobb_adapters/cwl/biobb_amber/nap 2022-12-02T09:21:39,493 copying biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/nap 2022-12-02T09:21:39,493 creating build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:39,494 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:39,494 copying biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:39,494 creating build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-02T09:21:39,495 copying biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-02T09:21:39,495 creating build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-02T09:21:39,495 copying biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-02T09:21:39,496 creating build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:39,496 copying biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:39,496 copying biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:39,496 creating build/lib/biobb_adapters/cwl/biobb_amber/sander 2022-12-02T09:21:39,497 copying biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_amber/sander 2022-12-02T09:21:39,497 creating build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,497 copying biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,498 copying biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,498 copying biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,498 copying biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,499 copying biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,499 copying biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,499 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,500 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,500 copying biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,500 copying biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,501 copying biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,501 copying biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,501 copying biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,502 copying biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,502 copying biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,502 copying biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,503 copying biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,503 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,503 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,504 copying biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:39,504 creating build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,504 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,505 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,505 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,505 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,505 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,506 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,506 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,506 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,507 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,507 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,507 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,508 copying biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:39,508 creating build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,508 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,509 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,509 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,509 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,509 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,510 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,510 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,511 copying biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl -> build/lib/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:39,515 creating build/lib/biobb_adapters/cwl/biobb_analysis/test 2022-12-02T09:21:39,516 copying biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_analysis/test 2022-12-02T09:21:39,520 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,522 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,526 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,530 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,534 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,538 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,542 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,546 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,549 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,554 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,557 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,561 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,565 copying biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:39,569 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data 2022-12-02T09:21:39,569 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:39,571 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:39,787 copying biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:40,132 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:40,133 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:40,137 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:40,193 copying biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:40,541 creating build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,543 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,547 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,550 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,554 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,558 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,562 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,565 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,569 copying biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:40,573 creating build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,574 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,578 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,582 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,586 copying biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,590 copying biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,594 copying biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,597 copying biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,601 copying biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,605 copying biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,609 copying biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:40,613 creating build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:40,614 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:40,618 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:40,622 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:40,626 copying biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:40,630 creating build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:40,631 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:40,636 copying biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:40,640 creating build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:40,641 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:40,645 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:40,649 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:40,653 copying biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:40,657 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test 2022-12-02T09:21:40,658 copying biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_chemistry/test 2022-12-02T09:21:40,663 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:40,664 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:40,668 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:40,671 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:40,675 copying biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:40,679 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:40,680 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:40,684 copying biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:40,688 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:40,690 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:40,694 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:40,698 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:40,701 copying biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:40,705 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data 2022-12-02T09:21:40,706 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:40,707 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:40,712 copying biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:40,716 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:40,717 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:40,723 copying biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:40,726 creating build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:40,728 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:40,734 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:40,738 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:40,741 copying biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:40,745 creating build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,746 copying biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,751 copying biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,755 copying biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,759 copying biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,763 copying biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/lib/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:40,767 creating build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,768 copying biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,772 copying biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,777 copying biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,781 copying biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,784 copying biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,788 copying biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,792 copying biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,797 copying biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,801 copying biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,804 copying biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,808 copying biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,812 copying biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,817 copying biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,821 copying biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,825 copying biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,829 copying biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,833 copying biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/lib/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:40,837 creating build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,838 copying biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,843 copying biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,847 copying biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,850 copying biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,854 copying biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,858 copying biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,862 copying biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,866 copying biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,870 copying biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,874 copying biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,878 copying biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,882 copying biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,886 copying biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/lib/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:40,889 creating build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,891 copying biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,895 copying biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,899 copying biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,903 copying biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,906 copying biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,910 copying biobb_adapters/cwl/biobb_io/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,914 copying biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,918 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,922 copying biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,926 copying biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,929 copying biobb_adapters/cwl/biobb_io/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,933 copying biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,937 copying biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,941 copying biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:40,944 creating build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,946 copying biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,950 copying biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,954 copying biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,957 copying biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,961 copying biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,965 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,969 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,972 copying biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,976 copying biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,980 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,984 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,988 copying biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,991 copying biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/lib/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:40,995 creating build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:40,996 copying biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,001 copying biobb_adapters/cwl/biobb_md/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,005 copying biobb_adapters/cwl/biobb_md/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,009 copying biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,013 copying biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,016 copying biobb_adapters/cwl/biobb_md/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,020 copying biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,025 copying biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,028 copying biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,033 copying biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,036 copying biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,040 copying biobb_adapters/cwl/biobb_md/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:41,044 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,045 copying biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,049 copying biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,054 copying biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,057 copying biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,061 copying biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,065 copying biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,068 copying biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,072 copying biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:41,076 creating build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-02T09:21:41,077 copying biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-02T09:21:41,081 creating build/lib/biobb_adapters/cwl/biobb_md/test 2022-12-02T09:21:41,082 copying biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_md/test 2022-12-02T09:21:41,086 creating build/lib/biobb_adapters/cwl/biobb_md/test/data 2022-12-02T09:21:41,086 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,088 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,283 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,467 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,474 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,577 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,602 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,769 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,813 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,838 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:41,991 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,014 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,367 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,453 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,579 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,744 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,918 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,925 copying biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:42,949 creating build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:42,951 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:43,660 copying biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:44,134 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,136 copying biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,139 copying biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,143 copying biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,147 copying biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,151 copying biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,154 copying biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,157 copying biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,162 copying biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:44,165 creating build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-02T09:21:44,166 copying biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-02T09:21:44,170 creating build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,172 copying biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,175 copying biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,179 copying biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,184 copying biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,188 copying biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,192 copying biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,195 copying biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,199 copying biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,202 copying biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,206 copying biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,210 copying biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,213 copying biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,217 copying biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,220 copying biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,224 copying biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,228 copying biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,232 copying biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,236 copying biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,240 copying biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,244 copying biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,248 copying biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,252 copying biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,255 copying biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,259 copying biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,263 copying biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,266 copying biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,270 copying biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,274 copying biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,278 copying biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,282 copying biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,286 copying biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,290 copying biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,294 copying biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,297 copying biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,301 copying biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,304 copying biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,308 copying biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,312 copying biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:44,316 creating build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,317 copying biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,321 copying biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,326 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,330 copying biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,334 copying biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,339 copying biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,343 copying biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:44,347 creating build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,348 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,352 copying biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,356 copying biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,360 copying biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,364 copying biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,367 copying biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,371 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,375 copying biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:44,379 creating build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:44,380 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:44,385 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:44,389 copying biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:44,392 creating build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,394 copying biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,398 copying biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,403 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,406 copying biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,410 copying biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,414 copying biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:44,418 creating build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:44,420 copying biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:44,424 copying biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:44,428 copying biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:44,432 copying biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:44,436 creating build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:44,437 copying biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:44,442 copying biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:44,446 copying biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:44,450 creating build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,451 copying biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,455 copying biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,459 copying biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,463 copying biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,467 copying biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,471 copying biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,474 copying biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/lib/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:44,478 creating build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,480 copying biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,484 copying biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,488 copying biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,492 copying biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,495 copying biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,499 copying biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,503 copying biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,506 copying biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,510 copying biobb_adapters/cwl/biobb_model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:44,513 creating build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,515 copying biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,519 copying biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,523 copying biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,527 copying biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,531 copying biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,534 copying biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/lib/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:44,538 creating build/lib/biobb_adapters/cwl/biobb_model/test 2022-12-02T09:21:44,540 copying biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_model/test 2022-12-02T09:21:44,544 creating build/lib/biobb_adapters/cwl/biobb_model/test/data 2022-12-02T09:21:44,545 creating build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-02T09:21:44,547 copying biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/lib/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-02T09:21:44,575 creating build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:44,577 copying biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:44,581 copying biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/lib/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:44,586 creating build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,588 copying biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,593 copying biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,598 copying biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,603 copying biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,607 copying biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,613 copying biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,617 copying biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:44,621 creating build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:44,624 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:44,628 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:44,633 copying biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/lib/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:44,637 creating build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,639 copying biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,645 copying biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,650 copying biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,655 copying biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,660 copying biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,665 copying biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,670 copying biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,675 copying biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,680 copying biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,686 copying biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,691 copying biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,696 copying biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,700 copying biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,705 copying biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,710 copying biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:44,715 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-02T09:21:44,717 copying biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-02T09:21:44,722 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:44,724 copying biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:44,797 copying biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,000 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,187 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,538 copying biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,566 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,571 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,585 copying biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,589 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,656 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:45,864 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,061 copying biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,078 copying biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,115 copying biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,118 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,120 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,125 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,129 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,133 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,137 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,142 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,146 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,150 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,154 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,158 copying biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:46,161 creating build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,163 copying biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,167 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,172 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,176 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,180 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,184 copying biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,188 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,193 copying biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,197 copying biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,201 copying biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,205 copying biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,209 copying biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/lib/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:46,213 creating build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,215 copying biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,219 copying biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,223 copying biobb_adapters/cwl/biobb_vs/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,227 copying biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,231 copying biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,235 copying biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,239 copying biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,243 copying biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,247 copying biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:46,251 creating build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:46,253 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:46,257 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:46,262 copying biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:46,265 creating build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:46,267 copying biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:46,271 copying biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:46,276 copying biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:46,280 copying biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:46,283 creating build/lib/biobb_adapters/cwl/biobb_vs/vina 2022-12-02T09:21:46,285 copying biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/lib/biobb_adapters/cwl/biobb_vs/vina 2022-12-02T09:21:46,431 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-02T09:21:46,432 setuptools.SetuptoolsDeprecationWarning, 2022-12-02T09:21:46,495 installing to build/bdist.linux-armv7l/wheel 2022-12-02T09:21:46,495 running install 2022-12-02T09:21:46,557 running install_lib 2022-12-02T09:21:46,624 creating build/bdist.linux-armv7l 2022-12-02T09:21:46,625 creating build/bdist.linux-armv7l/wheel 2022-12-02T09:21:46,628 creating build/bdist.linux-armv7l/wheel/biobb_adapters 2022-12-02T09:21:46,630 copying build/lib/biobb_adapters/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters 2022-12-02T09:21:46,635 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl 2022-12-02T09:21:46,638 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,642 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,644 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,648 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,651 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,655 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,658 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,662 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,666 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,669 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,674 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,677 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,682 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,685 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,689 copying build/lib/biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io/mmb_api 2022-12-02T09:21:46,693 copying build/lib/biobb_adapters/cwl/biobb_io/canonical_fasta.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,696 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,699 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_variants.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,703 copying build/lib/biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,706 copying build/lib/biobb_adapters/cwl/biobb_io/structure_info.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,710 copying build/lib/biobb_adapters/cwl/biobb_io/mmcif.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,714 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,717 copying build/lib/biobb_adapters/cwl/biobb_io/pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,721 copying build/lib/biobb_adapters/cwl/biobb_io/api_binding_site.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,724 copying build/lib/biobb_adapters/cwl/biobb_io/drugbank.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,728 copying build/lib/biobb_adapters/cwl/biobb_io/alphafold.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,731 copying build/lib/biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,735 copying build/lib/biobb_adapters/cwl/biobb_io/ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,738 copying build/lib/biobb_adapters/cwl/biobb_io/ideal_sdf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_io 2022-12-02T09:21:46,743 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,744 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,748 copying build/lib/biobb_adapters/cwl/biobb_cmip/titration.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,752 copying build/lib/biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,755 copying build/lib/biobb_adapters/cwl/biobb_cmip/cmip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,759 copying build/lib/biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_cmip 2022-12-02T09:21:46,764 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,766 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,769 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,774 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2022-12-02T09:21:46,775 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test 2022-12-02T09:21:46,780 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data 2022-12-02T09:21:46,782 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:46,784 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:46,788 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2 -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/acpype 2022-12-02T09:21:46,793 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:46,794 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:46,799 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:46,802 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:46,805 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/babelm 2022-12-02T09:21:46,810 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:46,811 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:46,815 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/data/ambertools 2022-12-02T09:21:46,820 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:46,821 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:46,825 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:46,828 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:46,831 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/acpype 2022-12-02T09:21:46,836 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:46,837 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:46,841 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:46,844 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:46,847 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/babelm 2022-12-02T09:21:46,852 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:46,853 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:46,857 copying build/lib/biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/test/ambertools 2022-12-02T09:21:46,860 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,863 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,867 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,871 copying build/lib/biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,876 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:46,877 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:46,881 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:46,884 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:46,888 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/acpype 2022-12-02T09:21:46,891 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,896 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:46,897 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:46,901 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:46,904 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:46,908 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/babelm 2022-12-02T09:21:46,912 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:46,914 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:46,917 copying build/lib/biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry/ambertools 2022-12-02T09:21:46,921 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,924 copying build/lib/biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,928 copying build/lib/biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_chemistry 2022-12-02T09:21:46,932 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,934 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,937 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,941 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,944 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,947 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,951 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,954 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,957 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:46,961 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-02T09:21:46,963 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test 2022-12-02T09:21:46,968 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,969 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:46,992 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,184 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,378 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,389 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,453 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,456 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,460 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,648 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,840 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,855 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,932 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,965 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:47,969 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/data 2022-12-02T09:21:48,188 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,190 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,194 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,197 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,201 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,204 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,208 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,211 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,214 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,218 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,221 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/test/utils 2022-12-02T09:21:48,224 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,229 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,230 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,234 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,237 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,241 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,244 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,247 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,251 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,254 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,257 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,261 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,264 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,268 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils/utils 2022-12-02T09:21:48,271 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,274 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,278 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,282 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,285 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,288 copying build/lib/biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_structure_utils 2022-12-02T09:21:48,294 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,295 copying build/lib/biobb_adapters/cwl/biobb_ml/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,299 copying build/lib/biobb_adapters/cwl/biobb_ml/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,303 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,306 copying build/lib/biobb_adapters/cwl/biobb_ml/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,310 copying build/lib/biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,314 copying build/lib/biobb_adapters/cwl/biobb_ml/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,317 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,321 copying build/lib/biobb_adapters/cwl/biobb_ml/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,324 copying build/lib/biobb_adapters/cwl/biobb_ml/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,328 copying build/lib/biobb_adapters/cwl/biobb_ml/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,331 copying build/lib/biobb_adapters/cwl/biobb_ml/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,336 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:48,337 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:48,342 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:48,345 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:48,348 copying build/lib/biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/regression 2022-12-02T09:21:48,352 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,357 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,358 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,362 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,365 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,369 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,372 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,376 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,379 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,383 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/clustering 2022-12-02T09:21:48,386 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,391 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,393 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,397 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,400 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,404 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,407 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,410 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/neural_networks 2022-12-02T09:21:48,415 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:48,416 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:48,420 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:48,424 copying build/lib/biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/dimensionality_reduction 2022-12-02T09:21:48,427 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,430 copying build/lib/biobb_adapters/cwl/biobb_ml/clustering_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,434 copying build/lib/biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,437 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_components.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,441 copying build/lib/biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,445 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,446 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,450 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,454 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,457 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,460 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,463 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,467 copying build/lib/biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/utils 2022-12-02T09:21:48,470 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,474 copying build/lib/biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,477 copying build/lib/biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,481 copying build/lib/biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,484 copying build/lib/biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,487 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,491 copying build/lib/biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,494 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,497 copying build/lib/biobb_adapters/cwl/biobb_ml/pls_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,501 copying build/lib/biobb_adapters/cwl/biobb_ml/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,505 copying build/lib/biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,509 copying build/lib/biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,513 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,515 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,519 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,523 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,527 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,531 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,535 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,538 copying build/lib/biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/classification 2022-12-02T09:21:48,542 copying build/lib/biobb_adapters/cwl/biobb_ml/decision_tree.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,546 copying build/lib/biobb_adapters/cwl/biobb_ml/dummy_variables.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,549 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,553 copying build/lib/biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,557 copying build/lib/biobb_adapters/cwl/biobb_ml/dendrogram.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,560 copying build/lib/biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,565 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:48,566 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:48,569 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:48,573 copying build/lib/biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml/resampling 2022-12-02T09:21:48,576 copying build/lib/biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,579 copying build/lib/biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_ml 2022-12-02T09:21:48,584 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:48,586 copying build/lib/biobb_adapters/cwl/biobb_md/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:48,589 copying build/lib/biobb_adapters/cwl/biobb_md/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:48,593 copying build/lib/biobb_adapters/cwl/biobb_md/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:48,597 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2022-12-02T09:21:48,598 copying build/lib/biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test 2022-12-02T09:21:48,603 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data 2022-12-02T09:21:48,606 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:48,607 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:48,988 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,088 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,111 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,122 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,288 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,310 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,478 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,505 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,686 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,693 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:49,855 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,106 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,154 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,254 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,354 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,492 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs 2022-12-02T09:21:50,514 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:50,516 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:50,938 copying build/lib/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/data/gromacs_extra 2022-12-02T09:21:51,458 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,459 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,463 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,466 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,470 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,473 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,477 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,480 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,484 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs 2022-12-02T09:21:51,488 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-02T09:21:51,490 copying build/lib/biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/test/gromacs_extra 2022-12-02T09:21:51,493 copying build/lib/biobb_adapters/cwl/biobb_md/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,497 copying build/lib/biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,501 copying build/lib/biobb_adapters/cwl/biobb_md/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,504 copying build/lib/biobb_adapters/cwl/biobb_md/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,508 copying build/lib/biobb_adapters/cwl/biobb_md/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,511 copying build/lib/biobb_adapters/cwl/biobb_md/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,514 copying build/lib/biobb_adapters/cwl/biobb_md/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,519 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,521 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,525 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,528 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,532 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,535 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,538 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,542 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,545 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs 2022-12-02T09:21:51,548 copying build/lib/biobb_adapters/cwl/biobb_md/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,552 copying build/lib/biobb_adapters/cwl/biobb_md/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md 2022-12-02T09:21:51,556 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-02T09:21:51,557 copying build/lib/biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_md/gromacs_extra 2022-12-02T09:21:51,562 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,564 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,567 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,571 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,575 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,578 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,582 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,586 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx 2022-12-02T09:21:51,590 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:51,591 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:51,595 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:51,598 copying build/lib/biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_pmx/pmx 2022-12-02T09:21:51,603 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,605 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,608 copying build/lib/biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,611 copying build/lib/biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,614 copying build/lib/biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,618 copying build/lib/biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,622 copying build/lib/biobb_adapters/cwl/biobb_gromacs/trjcat.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,625 copying build/lib/biobb_adapters/cwl/biobb_gromacs/mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,629 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genrestr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,632 copying build/lib/biobb_adapters/cwl/biobb_gromacs/genion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,635 copying build/lib/biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,639 copying build/lib/biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,642 copying build/lib/biobb_adapters/cwl/biobb_gromacs/solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,645 copying build/lib/biobb_adapters/cwl/biobb_gromacs/editconf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_gromacs 2022-12-02T09:21:51,650 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,651 copying build/lib/biobb_adapters/cwl/biobb_model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,655 copying build/lib/biobb_adapters/cwl/biobb_model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,658 copying build/lib/biobb_adapters/cwl/biobb_model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,662 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2022-12-02T09:21:51,664 copying build/lib/biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test 2022-12-02T09:21:51,668 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data 2022-12-02T09:21:51,670 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-02T09:21:51,672 copying build/lib/biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/data/model 2022-12-02T09:21:51,701 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:51,702 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:51,706 copying build/lib/biobb_adapters/cwl/biobb_model/test/model/mutate.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/test/model 2022-12-02T09:21:51,709 copying build/lib/biobb_adapters/cwl/biobb_model/fix_altlocs.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,712 copying build/lib/biobb_adapters/cwl/biobb_model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,715 copying build/lib/biobb_adapters/cwl/biobb_model/fix_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,719 copying build/lib/biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,722 copying build/lib/biobb_adapters/cwl/biobb_model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,726 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,728 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,731 copying build/lib/biobb_adapters/cwl/biobb_model/model/mutate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,735 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,738 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,741 copying build/lib/biobb_adapters/cwl/biobb_model/model/fix_amides.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,744 copying build/lib/biobb_adapters/cwl/biobb_model/model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model/model 2022-12-02T09:21:51,747 copying build/lib/biobb_adapters/cwl/biobb_model/checking_log.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_model 2022-12-02T09:21:51,753 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,755 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-02T09:21:51,757 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/cpptraj 2022-12-02T09:21:51,761 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,765 copying build/lib/biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,768 copying build/lib/biobb_adapters/cwl/biobb_amber/cestats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,773 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2022-12-02T09:21:51,775 copying build/lib/biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/nap 2022-12-02T09:21:51,778 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,782 copying build/lib/biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,786 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2022-12-02T09:21:51,787 copying build/lib/biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/sander 2022-12-02T09:21:51,792 copying build/lib/biobb_adapters/cwl/biobb_amber/cphstats_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,796 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:51,798 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:51,802 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:51,807 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:51,811 copying build/lib/biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/leap 2022-12-02T09:21:51,814 copying build/lib/biobb_adapters/cwl/biobb_amber/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,817 copying build/lib/biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,821 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-02T09:21:51,823 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pmemd 2022-12-02T09:21:51,827 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,830 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_solvate.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,835 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:51,836 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_minout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:51,840 copying build/lib/biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/process 2022-12-02T09:21:51,844 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,849 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-02T09:21:51,850 copying build/lib/biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/pdb4amber 2022-12-02T09:21:51,854 copying build/lib/biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,858 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:51,859 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:51,863 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/parmed 2022-12-02T09:21:51,866 copying build/lib/biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,872 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-02T09:21:51,873 copying build/lib/biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber/ambpdb 2022-12-02T09:21:51,876 copying build/lib/biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,881 copying build/lib/biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,884 copying build/lib/biobb_adapters/cwl/biobb_amber/process_mdout.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_amber 2022-12-02T09:21:51,889 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,890 copying build/lib/biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,895 copying build/lib/biobb_adapters/cwl/biobb_dna/interseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,899 copying build/lib/biobb_adapters/cwl/biobb_dna/interbpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,903 copying build/lib/biobb_adapters/cwl/biobb_dna/puckering.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,906 copying build/lib/biobb_adapters/cwl/biobb_dna/interhpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,910 copying build/lib/biobb_adapters/cwl/biobb_dna/average_stiffness.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,914 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canion.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,917 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_averages.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,920 copying build/lib/biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,925 copying build/lib/biobb_adapters/cwl/biobb_dna/bipopulations.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,928 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,932 copying build/lib/biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,935 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_canal.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,938 copying build/lib/biobb_adapters/cwl/biobb_dna/biobb_curves.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,941 copying build/lib/biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,945 copying build/lib/biobb_adapters/cwl/biobb_dna/canonicalag.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,950 copying build/lib/biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_dna 2022-12-02T09:21:51,955 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,957 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,960 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,964 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,967 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,970 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:51,975 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2022-12-02T09:21:51,976 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test 2022-12-02T09:21:51,981 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data 2022-12-02T09:21:51,983 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:51,985 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:52,142 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/ambertools 2022-12-02T09:21:52,476 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:52,478 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:52,483 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:52,884 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/data/gromacs 2022-12-02T09:21:52,939 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,941 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,944 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,948 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,951 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,954 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,958 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,961 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,965 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,968 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,971 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,974 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,978 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/ambertools 2022-12-02T09:21:52,982 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:52,984 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:52,987 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:52,991 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:52,994 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:52,998 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:53,001 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:53,005 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:53,008 copying build/lib/biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/test/gromacs 2022-12-02T09:21:53,012 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,015 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,019 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,022 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,025 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,029 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,032 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,036 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,042 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,044 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,048 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,052 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,056 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,060 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,064 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,068 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,072 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,076 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,081 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,085 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,089 copying build/lib/biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/ambertools 2022-12-02T09:21:53,093 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,097 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,102 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,104 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,109 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,113 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,117 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,121 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,125 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,130 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,134 copying build/lib/biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis/gromacs 2022-12-02T09:21:53,138 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,142 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,145 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,150 copying build/lib/biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,155 copying build/lib/biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_analysis 2022-12-02T09:21:53,160 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,162 copying build/lib/biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,165 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_run.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,169 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,172 copying build/lib/biobb_adapters/cwl/biobb_vs/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,176 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2022-12-02T09:21:53,178 copying build/lib/biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/vina 2022-12-02T09:21:53,181 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,185 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:53,187 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:53,191 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:53,194 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:53,197 copying build/lib/biobb_adapters/cwl/biobb_vs/utils/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/utils 2022-12-02T09:21:53,200 copying build/lib/biobb_adapters/cwl/biobb_vs/bindingsite.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,205 creating build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:53,206 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:53,210 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:53,213 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs/fpocket 2022-12-02T09:21:53,216 copying build/lib/biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,219 copying build/lib/biobb_adapters/cwl/biobb_vs/fpocket_select.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,223 copying build/lib/biobb_adapters/cwl/biobb_vs/box.cwl -> build/bdist.linux-armv7l/wheel/biobb_adapters/cwl/biobb_vs 2022-12-02T09:21:53,228 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2022-12-02T09:21:53,229 copying build/lib/biobb_adapters/pycompss/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss 2022-12-02T09:21:53,233 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2022-12-02T09:21:53,234 copying build/lib/biobb_adapters/pycompss/biobb_io/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io 2022-12-02T09:21:53,239 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,240 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,244 copying build/lib/biobb_adapters/pycompss/biobb_io/api/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,247 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,250 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_variants.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,253 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,256 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,259 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,262 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,266 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,269 copying build/lib/biobb_adapters/pycompss/biobb_io/api/binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,272 copying build/lib/biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,275 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,279 copying build/lib/biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,282 copying build/lib/biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,285 copying build/lib/biobb_adapters/pycompss/biobb_io/api/drugbank.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,289 copying build/lib/biobb_adapters/pycompss/biobb_io/api/api_binding_site.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,292 copying build/lib/biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,295 copying build/lib/biobb_adapters/pycompss/biobb_io/api/structure_info.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,299 copying build/lib/biobb_adapters/pycompss/biobb_io/api/mmcif.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_io/api 2022-12-02T09:21:53,303 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2022-12-02T09:21:53,304 copying build/lib/biobb_adapters/pycompss/biobb_cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip 2022-12-02T09:21:53,308 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,310 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,314 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,316 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,320 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/titration.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,323 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,326 copying build/lib/biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_cmip/cmip 2022-12-02T09:21:53,331 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2022-12-02T09:21:53,332 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry 2022-12-02T09:21:53,336 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,338 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,341 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,344 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,347 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,350 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,354 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,357 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,360 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,364 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/acpype 2022-12-02T09:21:53,368 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,369 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,373 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,376 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,379 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,383 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,386 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,389 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,393 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,396 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/babelm 2022-12-02T09:21:53,401 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,402 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,405 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,409 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,412 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,415 copying build/lib/biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_chemistry/ambertools 2022-12-02T09:21:53,419 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:53,421 copying build/lib/biobb_adapters/pycompss/biobb_commons/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:53,424 copying build/lib/biobb_adapters/pycompss/biobb_commons/task_config.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_commons 2022-12-02T09:21:53,428 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2022-12-02T09:21:53,430 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils 2022-12-02T09:21:53,435 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,436 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,439 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,442 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,445 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,448 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,452 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,455 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,458 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,462 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,465 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,468 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,471 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,475 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,478 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,481 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,485 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,488 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,491 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,494 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,497 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,500 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,504 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,507 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,510 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,513 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,516 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,519 copying build/lib/biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_structure_utils/utils 2022-12-02T09:21:53,524 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2022-12-02T09:21:53,526 copying build/lib/biobb_adapters/pycompss/biobb_ml/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml 2022-12-02T09:21:53,529 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,531 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,534 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,537 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,540 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,543 copying build/lib/biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/regression 2022-12-02T09:21:53,548 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,549 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,552 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,555 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,558 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,561 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,564 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,567 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,571 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,574 copying build/lib/biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/clustering 2022-12-02T09:21:53,578 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,579 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,582 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,585 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,588 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,592 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,595 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,598 copying build/lib/biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/neural_networks 2022-12-02T09:21:53,603 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:53,604 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:53,607 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:53,610 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:53,613 copying build/lib/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/dimensionality_reduction 2022-12-02T09:21:53,617 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,618 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,621 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,624 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,627 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,630 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,633 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,636 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,639 copying build/lib/biobb_adapters/pycompss/biobb_ml/utils/map_variables.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/utils 2022-12-02T09:21:53,644 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,645 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,648 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,651 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,654 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,657 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,660 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,664 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,667 copying build/lib/biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/classification 2022-12-02T09:21:53,671 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:53,672 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:53,675 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:53,678 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/resampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:53,681 copying build/lib/biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_ml/resampling 2022-12-02T09:21:53,685 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2022-12-02T09:21:53,687 copying build/lib/biobb_adapters/pycompss/biobb_md/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md 2022-12-02T09:21:53,691 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,692 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,695 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,698 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,701 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,704 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,707 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,710 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,713 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,716 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,720 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,723 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs 2022-12-02T09:21:53,727 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,728 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,731 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,734 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,737 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,740 copying build/lib/biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_md/gromacs_extra 2022-12-02T09:21:53,744 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2022-12-02T09:21:53,745 copying build/lib/biobb_adapters/pycompss/biobb_pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx 2022-12-02T09:21:53,749 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,751 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,753 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,757 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,760 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,763 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,766 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,769 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,772 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,775 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,778 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,781 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,784 copying build/lib/biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_pmx/pmx 2022-12-02T09:21:53,788 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2022-12-02T09:21:53,789 copying build/lib/biobb_adapters/pycompss/biobb_model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model 2022-12-02T09:21:53,794 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,795 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,798 copying build/lib/biobb_adapters/pycompss/biobb_model/model/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,801 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_chirality.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,804 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,807 copying build/lib/biobb_adapters/pycompss/biobb_model/model/checking_log.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,810 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,813 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,816 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_backbone.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,819 copying build/lib/biobb_adapters/pycompss/biobb_model/model/mutate_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,822 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_amides.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,825 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,828 copying build/lib/biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_model/model 2022-12-02T09:21:53,832 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2022-12-02T09:21:53,833 copying build/lib/biobb_adapters/pycompss/biobb_amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber 2022-12-02T09:21:53,837 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:53,838 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:53,842 copying build/lib/biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cpptraj 2022-12-02T09:21:53,846 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:53,847 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:53,850 copying build/lib/biobb_adapters/pycompss/biobb_amber/nab/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/nab 2022-12-02T09:21:53,854 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:53,855 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:53,858 copying build/lib/biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/sander 2022-12-02T09:21:53,862 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,863 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,866 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,869 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,873 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,876 copying build/lib/biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/leap 2022-12-02T09:21:53,880 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:53,881 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:53,884 copying build/lib/biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pmemd 2022-12-02T09:21:53,888 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:53,890 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:53,892 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_minout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:53,896 copying build/lib/biobb_adapters/pycompss/biobb_amber/process/process_mdout.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/process 2022-12-02T09:21:53,901 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:53,903 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:53,906 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:53,909 copying build/lib/biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/pdb4amber 2022-12-02T09:21:53,914 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:53,915 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:53,918 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:53,921 copying build/lib/biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/parmed 2022-12-02T09:21:53,925 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:53,926 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:53,929 copying build/lib/biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/ambpdb 2022-12-02T09:21:53,934 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:53,935 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:53,938 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:53,942 copying build/lib/biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_amber/cphstats 2022-12-02T09:21:53,946 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2022-12-02T09:21:53,948 copying build/lib/biobb_adapters/pycompss/biobb_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis 2022-12-02T09:21:53,953 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,954 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,958 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,961 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,964 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,968 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,971 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,974 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,977 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,981 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,984 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,987 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,990 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,993 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:53,997 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,000 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,003 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,007 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,010 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,013 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,016 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,020 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,023 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,026 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,029 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,033 copying build/lib/biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/ambertools 2022-12-02T09:21:54,037 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,039 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,041 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,045 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,048 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,051 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,054 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,058 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,061 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,064 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,067 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,070 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,073 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,076 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,079 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,083 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,086 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,089 copying build/lib/biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_analysis/gromacs 2022-12-02T09:21:54,093 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2022-12-02T09:21:54,095 copying build/lib/biobb_adapters/pycompss/biobb_vs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs 2022-12-02T09:21:54,098 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:54,100 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:54,103 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:54,106 copying build/lib/biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/vina 2022-12-02T09:21:54,111 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,112 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,115 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box_residues.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,118 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,122 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,125 copying build/lib/biobb_adapters/pycompss/biobb_vs/utils/box.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/utils 2022-12-02T09:21:54,130 creating build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,132 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,135 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,138 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,141 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,145 copying build/lib/biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py -> build/bdist.linux-armv7l/wheel/biobb_adapters/pycompss/biobb_vs/fpocket 2022-12-02T09:21:54,148 running install_egg_info 2022-12-02T09:21:54,225 Copying biobb_adapters.egg-info to build/bdist.linux-armv7l/wheel/biobb_adapters-3.8.1-py3.7.egg-info 2022-12-02T09:21:54,253 running install_scripts 2022-12-02T09:21:54,455 creating build/bdist.linux-armv7l/wheel/biobb_adapters-3.8.1.dist-info/WHEEL 2022-12-02T09:21:54,459 creating '/tmp/pip-wheel-0kr1hq3o/biobb_adapters-3.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-02T09:21:54,463 adding 'biobb_adapters/__init__.py' 2022-12-02T09:21:54,469 adding 'biobb_adapters/cwl/biobb_amber/amber_to_pdb.cwl' 2022-12-02T09:21:54,473 adding 'biobb_adapters/cwl/biobb_amber/cestats_run.cwl' 2022-12-02T09:21:54,476 adding 'biobb_adapters/cwl/biobb_amber/cphstats_run.cwl' 2022-12-02T09:21:54,479 adding 'biobb_adapters/cwl/biobb_amber/cpptraj_randomize_ions.cwl' 2022-12-02T09:21:54,482 adding 'biobb_adapters/cwl/biobb_amber/leap_add_ions.cwl' 2022-12-02T09:21:54,484 adding 'biobb_adapters/cwl/biobb_amber/leap_build_linear_structure.cwl' 2022-12-02T09:21:54,487 adding 'biobb_adapters/cwl/biobb_amber/leap_gen_top.cwl' 2022-12-02T09:21:54,490 adding 'biobb_adapters/cwl/biobb_amber/leap_solvate.cwl' 2022-12-02T09:21:54,492 adding 'biobb_adapters/cwl/biobb_amber/nab_build_dna_structure.cwl' 2022-12-02T09:21:54,495 adding 'biobb_adapters/cwl/biobb_amber/parmed_cpinutil.cwl' 2022-12-02T09:21:54,497 adding 'biobb_adapters/cwl/biobb_amber/parmed_hmassrepartition.cwl' 2022-12-02T09:21:54,500 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber_run.cwl' 2022-12-02T09:21:54,503 adding 'biobb_adapters/cwl/biobb_amber/pmemd_mdrun.cwl' 2022-12-02T09:21:54,505 adding 'biobb_adapters/cwl/biobb_amber/process_mdout.cwl' 2022-12-02T09:21:54,508 adding 'biobb_adapters/cwl/biobb_amber/process_minout.cwl' 2022-12-02T09:21:54,511 adding 'biobb_adapters/cwl/biobb_amber/sander_mdrun.cwl' 2022-12-02T09:21:54,515 adding 'biobb_adapters/cwl/biobb_amber/ambpdb/amber_to_pdb.cwl' 2022-12-02T09:21:54,519 adding 'biobb_adapters/cwl/biobb_amber/cpptraj/cpptraj_randomize_ions.cwl' 2022-12-02T09:21:54,523 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_add_ions.cwl' 2022-12-02T09:21:54,526 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_build_linear_structure.cwl' 2022-12-02T09:21:54,528 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_gen_top.cwl' 2022-12-02T09:21:54,531 adding 'biobb_adapters/cwl/biobb_amber/leap/leap_solvate.cwl' 2022-12-02T09:21:54,535 adding 'biobb_adapters/cwl/biobb_amber/nap/nab_build_dna_structure.cwl' 2022-12-02T09:21:54,538 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_cpinutil.cwl' 2022-12-02T09:21:54,541 adding 'biobb_adapters/cwl/biobb_amber/parmed/parmed_hmassrepartition.cwl' 2022-12-02T09:21:54,545 adding 'biobb_adapters/cwl/biobb_amber/pdb4amber/pdb4amber.cwl' 2022-12-02T09:21:54,549 adding 'biobb_adapters/cwl/biobb_amber/pmemd/pmemd_mdrun.cwl' 2022-12-02T09:21:54,552 adding 'biobb_adapters/cwl/biobb_amber/process/process_mdout.cwl' 2022-12-02T09:21:54,555 adding 'biobb_adapters/cwl/biobb_amber/process/process_minout.cwl' 2022-12-02T09:21:54,559 adding 'biobb_adapters/cwl/biobb_amber/sander/sander_mdrun.cwl' 2022-12-02T09:21:54,564 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_average.cwl' 2022-12-02T09:21:54,566 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_bfactor.cwl' 2022-12-02T09:21:54,569 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_convert.cwl' 2022-12-02T09:21:54,572 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_dry.cwl' 2022-12-02T09:21:54,574 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_image.cwl' 2022-12-02T09:21:54,577 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_mask.cwl' 2022-12-02T09:21:54,580 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rgyr.cwl' 2022-12-02T09:21:54,583 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rms.cwl' 2022-12-02T09:21:54,586 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_rmsf.cwl' 2022-12-02T09:21:54,588 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_slice.cwl' 2022-12-02T09:21:54,591 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_snapshot.cwl' 2022-12-02T09:21:54,594 adding 'biobb_adapters/cwl/biobb_analysis/cpptraj_strip.cwl' 2022-12-02T09:21:54,596 adding 'biobb_adapters/cwl/biobb_analysis/gmx_cluster.cwl' 2022-12-02T09:21:54,599 adding 'biobb_adapters/cwl/biobb_analysis/gmx_energy.cwl' 2022-12-02T09:21:54,602 adding 'biobb_adapters/cwl/biobb_analysis/gmx_image.cwl' 2022-12-02T09:21:54,604 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rgyr.cwl' 2022-12-02T09:21:54,607 adding 'biobb_adapters/cwl/biobb_analysis/gmx_rms.cwl' 2022-12-02T09:21:54,609 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str.cwl' 2022-12-02T09:21:54,613 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_str_ens.cwl' 2022-12-02T09:21:54,616 adding 'biobb_adapters/cwl/biobb_analysis/gmx_trjconv_trj.cwl' 2022-12-02T09:21:54,620 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_average.cwl' 2022-12-02T09:21:54,623 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_bfactor.cwl' 2022-12-02T09:21:54,625 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_convert.cwl' 2022-12-02T09:21:54,628 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_dry.cwl' 2022-12-02T09:21:54,631 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_image.cwl' 2022-12-02T09:21:54,634 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_mask.cwl' 2022-12-02T09:21:54,636 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rgyr.cwl' 2022-12-02T09:21:54,639 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rms.cwl' 2022-12-02T09:21:54,642 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_rmsf.cwl' 2022-12-02T09:21:54,645 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_slice.cwl' 2022-12-02T09:21:54,647 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_snapshot.cwl' 2022-12-02T09:21:54,650 adding 'biobb_adapters/cwl/biobb_analysis/ambertools/cpptraj_strip.cwl' 2022-12-02T09:21:54,654 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_cluster.cwl' 2022-12-02T09:21:54,657 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_energy.cwl' 2022-12-02T09:21:54,659 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_image.cwl' 2022-12-02T09:21:54,662 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rgyr.cwl' 2022-12-02T09:21:54,665 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_rms.cwl' 2022-12-02T09:21:54,667 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str.cwl' 2022-12-02T09:21:54,670 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_str_ens.cwl' 2022-12-02T09:21:54,673 adding 'biobb_adapters/cwl/biobb_analysis/gromacs/gmx_trjconv_trj.cwl' 2022-12-02T09:21:54,676 adding 'biobb_adapters/cwl/biobb_analysis/test/cwl_unitest.sh' 2022-12-02T09:21:54,679 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_average.yml' 2022-12-02T09:21:54,682 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_bfactor.yml' 2022-12-02T09:21:54,684 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_convert.yml' 2022-12-02T09:21:54,686 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_dry.yml' 2022-12-02T09:21:54,688 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_image.yml' 2022-12-02T09:21:54,690 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_mask.yml' 2022-12-02T09:21:54,692 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rgyr.yml' 2022-12-02T09:21:54,694 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rms.yml' 2022-12-02T09:21:54,696 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_rmsf.yml' 2022-12-02T09:21:54,699 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_slice.yml' 2022-12-02T09:21:54,701 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_snapshot.yml' 2022-12-02T09:21:54,703 adding 'biobb_adapters/cwl/biobb_analysis/test/ambertools/cpptraj_strip.yml' 2022-12-02T09:21:55,950 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.parm.top' 2022-12-02T09:21:58,841 adding 'biobb_adapters/cwl/biobb_analysis/test/data/ambertools/cpptraj.traj.dcd' 2022-12-02T09:21:58,980 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/energy.edr' 2022-12-02T09:21:59,363 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/topology.tpr' 2022-12-02T09:22:02,438 adding 'biobb_adapters/cwl/biobb_analysis/test/data/gromacs/trajectory.trr' 2022-12-02T09:22:02,597 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_cluster.yml' 2022-12-02T09:22:02,599 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_energy.yml' 2022-12-02T09:22:02,601 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_image.yml' 2022-12-02T09:22:02,603 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rgyr.yml' 2022-12-02T09:22:02,606 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_rms.yml' 2022-12-02T09:22:02,608 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str.yml' 2022-12-02T09:22:02,610 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_str_ens.yml' 2022-12-02T09:22:02,612 adding 'biobb_adapters/cwl/biobb_analysis/test/gromacs/gmx_trjconv_trj.yml' 2022-12-02T09:22:02,616 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_ac.cwl' 2022-12-02T09:22:02,619 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_cns.cwl' 2022-12-02T09:22:02,621 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx.cwl' 2022-12-02T09:22:02,624 adding 'biobb_adapters/cwl/biobb_chemistry/acpype_params_gmx_opls.cwl' 2022-12-02T09:22:02,626 adding 'biobb_adapters/cwl/biobb_chemistry/babel_add_hydrogens.cwl' 2022-12-02T09:22:02,629 adding 'biobb_adapters/cwl/biobb_chemistry/babel_convert.cwl' 2022-12-02T09:22:02,632 adding 'biobb_adapters/cwl/biobb_chemistry/babel_minimize.cwl' 2022-12-02T09:22:02,635 adding 'biobb_adapters/cwl/biobb_chemistry/babel_remove_hydrogens.cwl' 2022-12-02T09:22:02,637 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_add_hydrogens.cwl' 2022-12-02T09:22:02,640 adding 'biobb_adapters/cwl/biobb_chemistry/reduce_remove_hydrogens.cwl' 2022-12-02T09:22:02,643 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_ac.cwl' 2022-12-02T09:22:02,646 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_cns.cwl' 2022-12-02T09:22:02,648 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx.cwl' 2022-12-02T09:22:02,651 adding 'biobb_adapters/cwl/biobb_chemistry/acpype/acpype_params_gmx_opls.cwl' 2022-12-02T09:22:02,655 adding 'biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_add_hydrogens.cwl' 2022-12-02T09:22:02,657 adding 'biobb_adapters/cwl/biobb_chemistry/ambertools/reduce_remove_hydrogens.cwl' 2022-12-02T09:22:02,661 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_add_hydrogens.cwl' 2022-12-02T09:22:02,664 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_convert.cwl' 2022-12-02T09:22:02,666 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_minimize.cwl' 2022-12-02T09:22:02,669 adding 'biobb_adapters/cwl/biobb_chemistry/babelm/babel_remove_hydrogens.cwl' 2022-12-02T09:22:02,672 adding 'biobb_adapters/cwl/biobb_chemistry/test/cwl_unitest.sh' 2022-12-02T09:22:02,676 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_ac.yml' 2022-12-02T09:22:02,678 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_cns.yml' 2022-12-02T09:22:02,680 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx.yml' 2022-12-02T09:22:02,682 adding 'biobb_adapters/cwl/biobb_chemistry/test/acpype/acpype_params_gmx_opls.yml' 2022-12-02T09:22:02,685 adding 'biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_add_hydrogens.yml' 2022-12-02T09:22:02,687 adding 'biobb_adapters/cwl/biobb_chemistry/test/ambertools/reduce_remove_hydrogens.yml' 2022-12-02T09:22:02,691 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_add_hydrogens.yml' 2022-12-02T09:22:02,693 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_convert.yml' 2022-12-02T09:22:02,695 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_minimize.yml' 2022-12-02T09:22:02,697 adding 'biobb_adapters/cwl/biobb_chemistry/test/babelm/babel_remove_hydrogens.yml' 2022-12-02T09:22:02,701 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.mol2' 2022-12-02T09:22:02,704 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/acpype/acpype.params.pdb' 2022-12-02T09:22:02,708 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.H.pdb' 2022-12-02T09:22:02,711 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/ambertools/reduce.no.H.pdb' 2022-12-02T09:22:02,715 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.H.pdb' 2022-12-02T09:22:02,718 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.minimize.pdb' 2022-12-02T09:22:02,721 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.no.H.pdb' 2022-12-02T09:22:02,723 adding 'biobb_adapters/cwl/biobb_chemistry/test/data/babelm/babel.smi' 2022-12-02T09:22:02,727 adding 'biobb_adapters/cwl/biobb_cmip/cmip.cwl' 2022-12-02T09:22:02,729 adding 'biobb_adapters/cwl/biobb_cmip/ignore_residues.cwl' 2022-12-02T09:22:02,732 adding 'biobb_adapters/cwl/biobb_cmip/prepare_pdb.cwl' 2022-12-02T09:22:02,734 adding 'biobb_adapters/cwl/biobb_cmip/prepare_structure.cwl' 2022-12-02T09:22:02,737 adding 'biobb_adapters/cwl/biobb_cmip/titration.cwl' 2022-12-02T09:22:02,741 adding 'biobb_adapters/cwl/biobb_dna/average_stiffness.cwl' 2022-12-02T09:22:02,744 adding 'biobb_adapters/cwl/biobb_dna/basepair_stiffness.cwl' 2022-12-02T09:22:02,746 adding 'biobb_adapters/cwl/biobb_dna/biobb_canal.cwl' 2022-12-02T09:22:02,749 adding 'biobb_adapters/cwl/biobb_dna/biobb_canion.cwl' 2022-12-02T09:22:02,752 adding 'biobb_adapters/cwl/biobb_dna/biobb_curves.cwl' 2022-12-02T09:22:02,754 adding 'biobb_adapters/cwl/biobb_dna/bipopulations.cwl' 2022-12-02T09:22:02,757 adding 'biobb_adapters/cwl/biobb_dna/canonicalag.cwl' 2022-12-02T09:22:02,759 adding 'biobb_adapters/cwl/biobb_dna/dna_averages.cwl' 2022-12-02T09:22:02,762 adding 'biobb_adapters/cwl/biobb_dna/dna_bimodality.cwl' 2022-12-02T09:22:02,765 adding 'biobb_adapters/cwl/biobb_dna/dna_timeseries.cwl' 2022-12-02T09:22:02,768 adding 'biobb_adapters/cwl/biobb_dna/interbpcorr.cwl' 2022-12-02T09:22:02,770 adding 'biobb_adapters/cwl/biobb_dna/interhpcorr.cwl' 2022-12-02T09:22:02,773 adding 'biobb_adapters/cwl/biobb_dna/interseqcorr.cwl' 2022-12-02T09:22:02,776 adding 'biobb_adapters/cwl/biobb_dna/intrabpcorr.cwl' 2022-12-02T09:22:02,778 adding 'biobb_adapters/cwl/biobb_dna/intrahpcorr.cwl' 2022-12-02T09:22:02,781 adding 'biobb_adapters/cwl/biobb_dna/intraseqcorr.cwl' 2022-12-02T09:22:02,784 adding 'biobb_adapters/cwl/biobb_dna/puckering.cwl' 2022-12-02T09:22:02,788 adding 'biobb_adapters/cwl/biobb_gromacs/append_ligand.cwl' 2022-12-02T09:22:02,790 adding 'biobb_adapters/cwl/biobb_gromacs/editconf.cwl' 2022-12-02T09:22:02,793 adding 'biobb_adapters/cwl/biobb_gromacs/genion.cwl' 2022-12-02T09:22:02,795 adding 'biobb_adapters/cwl/biobb_gromacs/genrestr.cwl' 2022-12-02T09:22:02,798 adding 'biobb_adapters/cwl/biobb_gromacs/gmxselect.cwl' 2022-12-02T09:22:02,800 adding 'biobb_adapters/cwl/biobb_gromacs/grompp.cwl' 2022-12-02T09:22:02,804 adding 'biobb_adapters/cwl/biobb_gromacs/grompp_mdrun.cwl' 2022-12-02T09:22:02,806 adding 'biobb_adapters/cwl/biobb_gromacs/make_ndx.cwl' 2022-12-02T09:22:02,809 adding 'biobb_adapters/cwl/biobb_gromacs/mdrun.cwl' 2022-12-02T09:22:02,812 adding 'biobb_adapters/cwl/biobb_gromacs/ndx2resttop.cwl' 2022-12-02T09:22:02,814 adding 'biobb_adapters/cwl/biobb_gromacs/pdb2gmx.cwl' 2022-12-02T09:22:02,817 adding 'biobb_adapters/cwl/biobb_gromacs/solvate.cwl' 2022-12-02T09:22:02,819 adding 'biobb_adapters/cwl/biobb_gromacs/trjcat.cwl' 2022-12-02T09:22:02,823 adding 'biobb_adapters/cwl/biobb_io/alphafold.cwl' 2022-12-02T09:22:02,826 adding 'biobb_adapters/cwl/biobb_io/api_binding_site.cwl' 2022-12-02T09:22:02,828 adding 'biobb_adapters/cwl/biobb_io/canonical_fasta.cwl' 2022-12-02T09:22:02,831 adding 'biobb_adapters/cwl/biobb_io/drugbank.cwl' 2022-12-02T09:22:02,833 adding 'biobb_adapters/cwl/biobb_io/ideal_sdf.cwl' 2022-12-02T09:22:02,835 adding 'biobb_adapters/cwl/biobb_io/ligand.cwl' 2022-12-02T09:22:02,838 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim.cwl' 2022-12-02T09:22:02,840 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_list.cwl' 2022-12-02T09:22:02,843 adding 'biobb_adapters/cwl/biobb_io/memprotmd_sim_search.cwl' 2022-12-02T09:22:02,845 adding 'biobb_adapters/cwl/biobb_io/mmcif.cwl' 2022-12-02T09:22:02,847 adding 'biobb_adapters/cwl/biobb_io/pdb.cwl' 2022-12-02T09:22:02,850 adding 'biobb_adapters/cwl/biobb_io/pdb_cluster_zip.cwl' 2022-12-02T09:22:02,852 adding 'biobb_adapters/cwl/biobb_io/pdb_variants.cwl' 2022-12-02T09:22:02,855 adding 'biobb_adapters/cwl/biobb_io/structure_info.cwl' 2022-12-02T09:22:02,858 adding 'biobb_adapters/cwl/biobb_io/mmb_api/binding_site.cwl' 2022-12-02T09:22:02,861 adding 'biobb_adapters/cwl/biobb_io/mmb_api/canonical_fasta.cwl' 2022-12-02T09:22:02,863 adding 'biobb_adapters/cwl/biobb_io/mmb_api/drugbank.cwl' 2022-12-02T09:22:02,866 adding 'biobb_adapters/cwl/biobb_io/mmb_api/ideal_sdf.cwl' 2022-12-02T09:22:02,868 adding 'biobb_adapters/cwl/biobb_io/mmb_api/ligand.cwl' 2022-12-02T09:22:02,871 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim.cwl' 2022-12-02T09:22:02,873 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_list.cwl' 2022-12-02T09:22:02,875 adding 'biobb_adapters/cwl/biobb_io/mmb_api/memprotmd_sim_search.cwl' 2022-12-02T09:22:02,878 adding 'biobb_adapters/cwl/biobb_io/mmb_api/mmcif.cwl' 2022-12-02T09:22:02,880 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb.cwl' 2022-12-02T09:22:02,883 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb_cluster_zip.cwl' 2022-12-02T09:22:02,885 adding 'biobb_adapters/cwl/biobb_io/mmb_api/pdb_variants.cwl' 2022-12-02T09:22:02,888 adding 'biobb_adapters/cwl/biobb_io/mmb_api/structure_info.cwl' 2022-12-02T09:22:02,892 adding 'biobb_adapters/cwl/biobb_md/append_ligand.cwl' 2022-12-02T09:22:02,894 adding 'biobb_adapters/cwl/biobb_md/editconf.cwl' 2022-12-02T09:22:02,897 adding 'biobb_adapters/cwl/biobb_md/genion.cwl' 2022-12-02T09:22:02,899 adding 'biobb_adapters/cwl/biobb_md/genrestr.cwl' 2022-12-02T09:22:02,902 adding 'biobb_adapters/cwl/biobb_md/gmxselect.cwl' 2022-12-02T09:22:02,904 adding 'biobb_adapters/cwl/biobb_md/grompp.cwl' 2022-12-02T09:22:02,907 adding 'biobb_adapters/cwl/biobb_md/grompp_mdrun.cwl' 2022-12-02T09:22:02,910 adding 'biobb_adapters/cwl/biobb_md/make_ndx.cwl' 2022-12-02T09:22:02,913 adding 'biobb_adapters/cwl/biobb_md/mdrun.cwl' 2022-12-02T09:22:02,915 adding 'biobb_adapters/cwl/biobb_md/ndx2resttop.cwl' 2022-12-02T09:22:02,918 adding 'biobb_adapters/cwl/biobb_md/pdb2gmx.cwl' 2022-12-02T09:22:02,921 adding 'biobb_adapters/cwl/biobb_md/solvate.cwl' 2022-12-02T09:22:02,924 adding 'biobb_adapters/cwl/biobb_md/gromacs/editconf.cwl' 2022-12-02T09:22:02,927 adding 'biobb_adapters/cwl/biobb_md/gromacs/genion.cwl' 2022-12-02T09:22:02,929 adding 'biobb_adapters/cwl/biobb_md/gromacs/genrestr.cwl' 2022-12-02T09:22:02,931 adding 'biobb_adapters/cwl/biobb_md/gromacs/grompp.cwl' 2022-12-02T09:22:02,934 adding 'biobb_adapters/cwl/biobb_md/gromacs/make_ndx.cwl' 2022-12-02T09:22:02,936 adding 'biobb_adapters/cwl/biobb_md/gromacs/mdrun.cwl' 2022-12-02T09:22:02,938 adding 'biobb_adapters/cwl/biobb_md/gromacs/pdb2gmx.cwl' 2022-12-02T09:22:02,941 adding 'biobb_adapters/cwl/biobb_md/gromacs/solvate.cwl' 2022-12-02T09:22:02,944 adding 'biobb_adapters/cwl/biobb_md/gromacs_extra/ndx2resttop.cwl' 2022-12-02T09:22:02,947 adding 'biobb_adapters/cwl/biobb_md/test/cwl_unitest.sh' 2022-12-02T09:22:06,611 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.gro' 2022-12-02T09:22:08,072 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/cluster.trr' 2022-12-02T09:22:08,170 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/editconf.gro' 2022-12-02T09:22:08,806 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.tpr' 2022-12-02T09:22:08,956 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genion.zip' 2022-12-02T09:22:10,820 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.gro' 2022-12-02T09:22:11,395 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.ndx' 2022-12-02T09:22:11,521 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/genrestr.zip' 2022-12-02T09:22:13,513 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.gro' 2022-12-02T09:22:13,688 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/grompp.zip' 2022-12-02T09:22:17,842 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/make_ndx.tpr' 2022-12-02T09:22:18,643 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/mdrun.tpr' 2022-12-02T09:22:19,603 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/pyruvate_kinase.pdb' 2022-12-02T09:22:21,508 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.gro' 2022-12-02T09:22:22,935 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/rms.trr' 2022-12-02T09:22:23,033 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.gro' 2022-12-02T09:22:23,144 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs/solvate.zip' 2022-12-02T09:22:30,407 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.ndx' 2022-12-02T09:22:33,505 adding 'biobb_adapters/cwl/biobb_md/test/data/gromacs_extra/ndx2resttop.zip' 2022-12-02T09:22:33,703 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/editconf.yml' 2022-12-02T09:22:33,705 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/genion.yml' 2022-12-02T09:22:33,707 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/genrestr.yml' 2022-12-02T09:22:33,709 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/grompp.yml' 2022-12-02T09:22:33,711 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/make_ndx.yml' 2022-12-02T09:22:33,714 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/mdrun.yml' 2022-12-02T09:22:33,716 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/pdb2gmx.yml' 2022-12-02T09:22:33,718 adding 'biobb_adapters/cwl/biobb_md/test/gromacs/solvate.yml' 2022-12-02T09:22:33,722 adding 'biobb_adapters/cwl/biobb_md/test/gromacs_extra/ndx2resttop.yml' 2022-12-02T09:22:33,727 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_clustering.cwl' 2022-12-02T09:22:33,730 adding 'biobb_adapters/cwl/biobb_ml/agglomerative_coefficient.cwl' 2022-12-02T09:22:33,732 adding 'biobb_adapters/cwl/biobb_ml/autoencoder_neural_network.cwl' 2022-12-02T09:22:33,735 adding 'biobb_adapters/cwl/biobb_ml/classification_neural_network.cwl' 2022-12-02T09:22:33,738 adding 'biobb_adapters/cwl/biobb_ml/classification_predict.cwl' 2022-12-02T09:22:33,740 adding 'biobb_adapters/cwl/biobb_ml/clustering_predict.cwl' 2022-12-02T09:22:33,743 adding 'biobb_adapters/cwl/biobb_ml/correlation_matrix.cwl' 2022-12-02T09:22:33,745 adding 'biobb_adapters/cwl/biobb_ml/dbscan.cwl' 2022-12-02T09:22:33,748 adding 'biobb_adapters/cwl/biobb_ml/decision_tree.cwl' 2022-12-02T09:22:33,750 adding 'biobb_adapters/cwl/biobb_ml/dendrogram.cwl' 2022-12-02T09:22:33,753 adding 'biobb_adapters/cwl/biobb_ml/drop_columns.cwl' 2022-12-02T09:22:33,755 adding 'biobb_adapters/cwl/biobb_ml/dummy_variables.cwl' 2022-12-02T09:22:33,758 adding 'biobb_adapters/cwl/biobb_ml/k_means.cwl' 2022-12-02T09:22:33,761 adding 'biobb_adapters/cwl/biobb_ml/k_means_coefficient.cwl' 2022-12-02T09:22:33,764 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors.cwl' 2022-12-02T09:22:33,766 adding 'biobb_adapters/cwl/biobb_ml/k_neighbors_coefficient.cwl' 2022-12-02T09:22:33,769 adding 'biobb_adapters/cwl/biobb_ml/linear_regression.cwl' 2022-12-02T09:22:33,771 adding 'biobb_adapters/cwl/biobb_ml/logistic_regression.cwl' 2022-12-02T09:22:33,774 adding 'biobb_adapters/cwl/biobb_ml/map_variables.cwl' 2022-12-02T09:22:33,777 adding 'biobb_adapters/cwl/biobb_ml/neural_network_decode.cwl' 2022-12-02T09:22:33,779 adding 'biobb_adapters/cwl/biobb_ml/neural_network_predict.cwl' 2022-12-02T09:22:33,782 adding 'biobb_adapters/cwl/biobb_ml/oversampling.cwl' 2022-12-02T09:22:33,784 adding 'biobb_adapters/cwl/biobb_ml/pairwise_comparison.cwl' 2022-12-02T09:22:33,787 adding 'biobb_adapters/cwl/biobb_ml/pls_components.cwl' 2022-12-02T09:22:33,789 adding 'biobb_adapters/cwl/biobb_ml/pls_regression.cwl' 2022-12-02T09:22:33,792 adding 'biobb_adapters/cwl/biobb_ml/polynomial_regression.cwl' 2022-12-02T09:22:33,795 adding 'biobb_adapters/cwl/biobb_ml/principal_component.cwl' 2022-12-02T09:22:33,798 adding 'biobb_adapters/cwl/biobb_ml/random_forest_classifier.cwl' 2022-12-02T09:22:33,800 adding 'biobb_adapters/cwl/biobb_ml/random_forest_regressor.cwl' 2022-12-02T09:22:33,803 adding 'biobb_adapters/cwl/biobb_ml/recurrent_neural_network.cwl' 2022-12-02T09:22:33,806 adding 'biobb_adapters/cwl/biobb_ml/regression_neural_network.cwl' 2022-12-02T09:22:33,808 adding 'biobb_adapters/cwl/biobb_ml/regression_predict.cwl' 2022-12-02T09:22:33,811 adding 'biobb_adapters/cwl/biobb_ml/resampling.cwl' 2022-12-02T09:22:33,813 adding 'biobb_adapters/cwl/biobb_ml/scale_columns.cwl' 2022-12-02T09:22:33,816 adding 'biobb_adapters/cwl/biobb_ml/spectral_clustering.cwl' 2022-12-02T09:22:33,818 adding 'biobb_adapters/cwl/biobb_ml/spectral_coefficient.cwl' 2022-12-02T09:22:33,821 adding 'biobb_adapters/cwl/biobb_ml/support_vector_machine.cwl' 2022-12-02T09:22:33,824 adding 'biobb_adapters/cwl/biobb_ml/undersampling.cwl' 2022-12-02T09:22:33,827 adding 'biobb_adapters/cwl/biobb_ml/classification/classification_predict.cwl' 2022-12-02T09:22:33,830 adding 'biobb_adapters/cwl/biobb_ml/classification/decision_tree.cwl' 2022-12-02T09:22:33,833 adding 'biobb_adapters/cwl/biobb_ml/classification/k_neighbors.cwl' 2022-12-02T09:22:33,835 adding 'biobb_adapters/cwl/biobb_ml/classification/k_neighbors_coefficient.cwl' 2022-12-02T09:22:33,838 adding 'biobb_adapters/cwl/biobb_ml/classification/logistic_regression.cwl' 2022-12-02T09:22:33,841 adding 'biobb_adapters/cwl/biobb_ml/classification/random_forest_classifier.cwl' 2022-12-02T09:22:33,844 adding 'biobb_adapters/cwl/biobb_ml/classification/support_vector_machine.cwl' 2022-12-02T09:22:33,848 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_clustering.cwl' 2022-12-02T09:22:33,850 adding 'biobb_adapters/cwl/biobb_ml/clustering/agglomerative_coefficient.cwl' 2022-12-02T09:22:33,853 adding 'biobb_adapters/cwl/biobb_ml/clustering/clustering_predict.cwl' 2022-12-02T09:22:33,855 adding 'biobb_adapters/cwl/biobb_ml/clustering/dbscan.cwl' 2022-12-02T09:22:33,858 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means.cwl' 2022-12-02T09:22:33,860 adding 'biobb_adapters/cwl/biobb_ml/clustering/k_means_coefficient.cwl' 2022-12-02T09:22:33,863 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_clustering.cwl' 2022-12-02T09:22:33,866 adding 'biobb_adapters/cwl/biobb_ml/clustering/spectral_coefficient.cwl' 2022-12-02T09:22:33,870 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_components.cwl' 2022-12-02T09:22:33,872 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/pls_regression.cwl' 2022-12-02T09:22:33,875 adding 'biobb_adapters/cwl/biobb_ml/dimensionality_reduction/principal_component.cwl' 2022-12-02T09:22:33,879 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/autoencoder_neural_network.cwl' 2022-12-02T09:22:33,882 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/classification_neural_network.cwl' 2022-12-02T09:22:33,884 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_decode.cwl' 2022-12-02T09:22:33,887 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/neural_network_predict.cwl' 2022-12-02T09:22:33,889 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/recurrent_neural_network.cwl' 2022-12-02T09:22:33,892 adding 'biobb_adapters/cwl/biobb_ml/neural_networks/regression_neural_network.cwl' 2022-12-02T09:22:33,896 adding 'biobb_adapters/cwl/biobb_ml/regression/linear_regression.cwl' 2022-12-02T09:22:33,898 adding 'biobb_adapters/cwl/biobb_ml/regression/polynomial_regression.cwl' 2022-12-02T09:22:33,901 adding 'biobb_adapters/cwl/biobb_ml/regression/random_forest_regressor.cwl' 2022-12-02T09:22:33,904 adding 'biobb_adapters/cwl/biobb_ml/regression/regression_predict.cwl' 2022-12-02T09:22:33,907 adding 'biobb_adapters/cwl/biobb_ml/resampling/oversampling.cwl' 2022-12-02T09:22:33,910 adding 'biobb_adapters/cwl/biobb_ml/resampling/resampling.cwl' 2022-12-02T09:22:33,913 adding 'biobb_adapters/cwl/biobb_ml/resampling/undersampling.cwl' 2022-12-02T09:22:33,916 adding 'biobb_adapters/cwl/biobb_ml/utils/correlation_matrix.cwl' 2022-12-02T09:22:33,919 adding 'biobb_adapters/cwl/biobb_ml/utils/dendrogram.cwl' 2022-12-02T09:22:33,921 adding 'biobb_adapters/cwl/biobb_ml/utils/drop_columns.cwl' 2022-12-02T09:22:33,924 adding 'biobb_adapters/cwl/biobb_ml/utils/dummy_variables.cwl' 2022-12-02T09:22:33,927 adding 'biobb_adapters/cwl/biobb_ml/utils/map_variables.cwl' 2022-12-02T09:22:33,929 adding 'biobb_adapters/cwl/biobb_ml/utils/pairwise_comparison.cwl' 2022-12-02T09:22:33,931 adding 'biobb_adapters/cwl/biobb_ml/utils/scale_columns.cwl' 2022-12-02T09:22:33,936 adding 'biobb_adapters/cwl/biobb_model/checking_log.cwl' 2022-12-02T09:22:33,938 adding 'biobb_adapters/cwl/biobb_model/fix_altlocs.cwl' 2022-12-02T09:22:33,941 adding 'biobb_adapters/cwl/biobb_model/fix_amides.cwl' 2022-12-02T09:22:33,943 adding 'biobb_adapters/cwl/biobb_model/fix_backbone.cwl' 2022-12-02T09:22:33,946 adding 'biobb_adapters/cwl/biobb_model/fix_chirality.cwl' 2022-12-02T09:22:33,948 adding 'biobb_adapters/cwl/biobb_model/fix_pdb.cwl' 2022-12-02T09:22:33,951 adding 'biobb_adapters/cwl/biobb_model/fix_side_chain.cwl' 2022-12-02T09:22:33,953 adding 'biobb_adapters/cwl/biobb_model/fix_ssbonds.cwl' 2022-12-02T09:22:33,955 adding 'biobb_adapters/cwl/biobb_model/mutate.cwl' 2022-12-02T09:22:33,959 adding 'biobb_adapters/cwl/biobb_model/model/checking_log.cwl' 2022-12-02T09:22:33,962 adding 'biobb_adapters/cwl/biobb_model/model/fix_amides.cwl' 2022-12-02T09:22:33,964 adding 'biobb_adapters/cwl/biobb_model/model/fix_backbone.cwl' 2022-12-02T09:22:33,967 adding 'biobb_adapters/cwl/biobb_model/model/fix_chirality.cwl' 2022-12-02T09:22:33,969 adding 'biobb_adapters/cwl/biobb_model/model/fix_side_chain.cwl' 2022-12-02T09:22:33,972 adding 'biobb_adapters/cwl/biobb_model/model/mutate.cwl' 2022-12-02T09:22:33,975 adding 'biobb_adapters/cwl/biobb_model/test/cwl_unitest.sh' 2022-12-02T09:22:34,166 adding 'biobb_adapters/cwl/biobb_model/test/data/model/2ki5.pdb' 2022-12-02T09:22:34,181 adding 'biobb_adapters/cwl/biobb_model/test/model/fix_side_chain.yml' 2022-12-02T09:22:34,183 adding 'biobb_adapters/cwl/biobb_model/test/model/mutate.yml' 2022-12-02T09:22:34,187 adding 'biobb_adapters/cwl/biobb_pmx/pmxanalyse.cwl' 2022-12-02T09:22:34,191 adding 'biobb_adapters/cwl/biobb_pmx/pmxatom_mapping.cwl' 2022-12-02T09:22:34,193 adding 'biobb_adapters/cwl/biobb_pmx/pmxcreate_top.cwl' 2022-12-02T09:22:34,196 adding 'biobb_adapters/cwl/biobb_pmx/pmxgentop.cwl' 2022-12-02T09:22:34,199 adding 'biobb_adapters/cwl/biobb_pmx/pmxligand_hybrid.cwl' 2022-12-02T09:22:34,201 adding 'biobb_adapters/cwl/biobb_pmx/pmxmerge_ff.cwl' 2022-12-02T09:22:34,204 adding 'biobb_adapters/cwl/biobb_pmx/pmxmutate.cwl' 2022-12-02T09:22:34,207 adding 'biobb_adapters/cwl/biobb_pmx/pmx/pmxanalyse.cwl' 2022-12-02T09:22:34,210 adding 'biobb_adapters/cwl/biobb_pmx/pmx/pmxgentop.cwl' 2022-12-02T09:22:34,212 adding 'biobb_adapters/cwl/biobb_pmx/pmx/pmxmutate.cwl' 2022-12-02T09:22:34,217 adding 'biobb_adapters/cwl/biobb_structure_utils/cat_pdb.cwl' 2022-12-02T09:22:34,220 adding 'biobb_adapters/cwl/biobb_structure_utils/closest_residues.cwl' 2022-12-02T09:22:34,222 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_atoms.cwl' 2022-12-02T09:22:34,225 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_chain.cwl' 2022-12-02T09:22:34,227 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_heteroatoms.cwl' 2022-12-02T09:22:34,229 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_model.cwl' 2022-12-02T09:22:34,232 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_molecule.cwl' 2022-12-02T09:22:34,234 adding 'biobb_adapters/cwl/biobb_structure_utils/extract_residues.cwl' 2022-12-02T09:22:34,237 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_ligand.cwl' 2022-12-02T09:22:34,239 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_molecules.cwl' 2022-12-02T09:22:34,242 adding 'biobb_adapters/cwl/biobb_structure_utils/remove_pdb_water.cwl' 2022-12-02T09:22:34,245 adding 'biobb_adapters/cwl/biobb_structure_utils/renumber_structure.cwl' 2022-12-02T09:22:34,247 adding 'biobb_adapters/cwl/biobb_structure_utils/sort_gro_residues.cwl' 2022-12-02T09:22:34,250 adding 'biobb_adapters/cwl/biobb_structure_utils/str_check_add_hydrogens.cwl' 2022-12-02T09:22:34,253 adding 'biobb_adapters/cwl/biobb_structure_utils/structure_check.cwl' 2022-12-02T09:22:34,256 adding 'biobb_adapters/cwl/biobb_structure_utils/test/cwl_unitest.sh' 2022-12-02T09:22:34,873 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/2vgb.pdb' 2022-12-02T09:22:36,427 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/G2S_stateA_frame92.sorted.gro' 2022-12-02T09:22:39,364 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.gro' 2022-12-02T09:22:40,853 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_1.pdb' 2022-12-02T09:22:41,079 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/WT_aq4_md_WAT.pdb' 2022-12-02T09:22:41,090 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_ligand.pdb' 2022-12-02T09:22:41,164 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cat_protein.pdb' 2022-12-02T09:22:41,170 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/cl3.noH.pdb' 2022-12-02T09:22:41,737 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_chain.pdb' 2022-12-02T09:22:43,260 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_heteroatom.pdb' 2022-12-02T09:22:44,838 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_model.pdb' 2022-12-02T09:22:45,001 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/extract_protein.pdb' 2022-12-02T09:22:45,371 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/pyruvate.gro' 2022-12-02T09:22:45,387 adding 'biobb_adapters/cwl/biobb_structure_utils/test/data/smallgro.gro' 2022-12-02T09:22:45,390 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/cat_pdb.yml' 2022-12-02T09:22:45,393 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_atoms.yml' 2022-12-02T09:22:45,395 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_chain.yml' 2022-12-02T09:22:45,397 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_heteroatoms.yml' 2022-12-02T09:22:45,399 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_model.yml' 2022-12-02T09:22:45,401 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/extract_protein.yml' 2022-12-02T09:22:45,403 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_ligand.yml' 2022-12-02T09:22:45,405 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/remove_pdb_water.yml' 2022-12-02T09:22:45,407 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/renumber_structure.yml' 2022-12-02T09:22:45,409 adding 'biobb_adapters/cwl/biobb_structure_utils/test/utils/sort_gro_residues.yml' 2022-12-02T09:22:45,413 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/cat_pdb.cwl' 2022-12-02T09:22:45,416 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_atoms.cwl' 2022-12-02T09:22:45,418 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_chain.cwl' 2022-12-02T09:22:45,421 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_heteroatoms.cwl' 2022-12-02T09:22:45,423 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_model.cwl' 2022-12-02T09:22:45,425 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/extract_protein.cwl' 2022-12-02T09:22:45,428 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_ligand.cwl' 2022-12-02T09:22:45,430 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/remove_pdb_water.cwl' 2022-12-02T09:22:45,433 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/renumber_structure.cwl' 2022-12-02T09:22:45,436 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/sort_gro_residues.cwl' 2022-12-02T09:22:45,438 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/str_check_add_hydrogens.cwl' 2022-12-02T09:22:45,441 adding 'biobb_adapters/cwl/biobb_structure_utils/utils/structure_check.cwl' 2022-12-02T09:22:45,445 adding 'biobb_adapters/cwl/biobb_vs/autodock_vina_run.cwl' 2022-12-02T09:22:45,448 adding 'biobb_adapters/cwl/biobb_vs/bindingsite.cwl' 2022-12-02T09:22:45,450 adding 'biobb_adapters/cwl/biobb_vs/box.cwl' 2022-12-02T09:22:45,453 adding 'biobb_adapters/cwl/biobb_vs/box_residues.cwl' 2022-12-02T09:22:45,455 adding 'biobb_adapters/cwl/biobb_vs/extract_model_pdbqt.cwl' 2022-12-02T09:22:45,457 adding 'biobb_adapters/cwl/biobb_vs/fpocket.cwl' 2022-12-02T09:22:45,460 adding 'biobb_adapters/cwl/biobb_vs/fpocket_filter.cwl' 2022-12-02T09:22:45,463 adding 'biobb_adapters/cwl/biobb_vs/fpocket_run.cwl' 2022-12-02T09:22:45,465 adding 'biobb_adapters/cwl/biobb_vs/fpocket_select.cwl' 2022-12-02T09:22:45,469 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket.cwl' 2022-12-02T09:22:45,471 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_filter.cwl' 2022-12-02T09:22:45,474 adding 'biobb_adapters/cwl/biobb_vs/fpocket/fpocket_select.cwl' 2022-12-02T09:22:45,478 adding 'biobb_adapters/cwl/biobb_vs/utils/bindingsite.cwl' 2022-12-02T09:22:45,481 adding 'biobb_adapters/cwl/biobb_vs/utils/box.cwl' 2022-12-02T09:22:45,483 adding 'biobb_adapters/cwl/biobb_vs/utils/box_residues.cwl' 2022-12-02T09:22:45,485 adding 'biobb_adapters/cwl/biobb_vs/utils/extract_model_pdbqt.cwl' 2022-12-02T09:22:45,489 adding 'biobb_adapters/cwl/biobb_vs/vina/autodock_vina.cwl' 2022-12-02T09:22:45,493 adding 'biobb_adapters/pycompss/__init__.py' 2022-12-02T09:22:45,496 adding 'biobb_adapters/pycompss/biobb_amber/__init__.py' 2022-12-02T09:22:45,499 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/__init__.py' 2022-12-02T09:22:45,502 adding 'biobb_adapters/pycompss/biobb_amber/ambpdb/amber_to_pdb.py' 2022-12-02T09:22:45,505 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/__init__.py' 2022-12-02T09:22:45,507 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cestats_run.py' 2022-12-02T09:22:45,510 adding 'biobb_adapters/pycompss/biobb_amber/cphstats/cphstats_run.py' 2022-12-02T09:22:45,513 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/__init__.py' 2022-12-02T09:22:45,515 adding 'biobb_adapters/pycompss/biobb_amber/cpptraj/cpptraj_randomize_ions.py' 2022-12-02T09:22:45,518 adding 'biobb_adapters/pycompss/biobb_amber/leap/__init__.py' 2022-12-02T09:22:45,521 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_add_ions.py' 2022-12-02T09:22:45,523 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_build_linear_structure.py' 2022-12-02T09:22:45,525 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_gen_top.py' 2022-12-02T09:22:45,528 adding 'biobb_adapters/pycompss/biobb_amber/leap/leap_solvate.py' 2022-12-02T09:22:45,531 adding 'biobb_adapters/pycompss/biobb_amber/nab/__init__.py' 2022-12-02T09:22:45,534 adding 'biobb_adapters/pycompss/biobb_amber/nab/nab_build_dna_structure.py' 2022-12-02T09:22:45,536 adding 'biobb_adapters/pycompss/biobb_amber/parmed/__init__.py' 2022-12-02T09:22:45,539 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_cpinutil.py' 2022-12-02T09:22:45,541 adding 'biobb_adapters/pycompss/biobb_amber/parmed/parmed_hmassrepartition.py' 2022-12-02T09:22:45,544 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/__init__.py' 2022-12-02T09:22:45,546 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber.py' 2022-12-02T09:22:45,549 adding 'biobb_adapters/pycompss/biobb_amber/pdb4amber/pdb4amber_run.py' 2022-12-02T09:22:45,552 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/__init__.py' 2022-12-02T09:22:45,554 adding 'biobb_adapters/pycompss/biobb_amber/pmemd/pmemd_mdrun.py' 2022-12-02T09:22:45,557 adding 'biobb_adapters/pycompss/biobb_amber/process/__init__.py' 2022-12-02T09:22:45,559 adding 'biobb_adapters/pycompss/biobb_amber/process/process_mdout.py' 2022-12-02T09:22:45,562 adding 'biobb_adapters/pycompss/biobb_amber/process/process_minout.py' 2022-12-02T09:22:45,565 adding 'biobb_adapters/pycompss/biobb_amber/sander/__init__.py' 2022-12-02T09:22:45,567 adding 'biobb_adapters/pycompss/biobb_amber/sander/sander_mdrun.py' 2022-12-02T09:22:45,571 adding 'biobb_adapters/pycompss/biobb_analysis/__init__.py' 2022-12-02T09:22:45,574 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/__init__.py' 2022-12-02T09:22:45,577 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average.py' 2022-12-02T09:22:45,579 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_average_pc.py' 2022-12-02T09:22:45,581 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor.py' 2022-12-02T09:22:45,583 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_bfactor_pc.py' 2022-12-02T09:22:45,586 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert.py' 2022-12-02T09:22:45,588 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_convert_pc.py' 2022-12-02T09:22:45,590 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry.py' 2022-12-02T09:22:45,592 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_dry_pc.py' 2022-12-02T09:22:45,595 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image.py' 2022-12-02T09:22:45,597 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_image_pc.py' 2022-12-02T09:22:45,599 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask.py' 2022-12-02T09:22:45,601 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_mask_pc.py' 2022-12-02T09:22:45,604 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr.py' 2022-12-02T09:22:45,606 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rgyr_pc.py' 2022-12-02T09:22:45,608 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms.py' 2022-12-02T09:22:45,610 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rms_pc.py' 2022-12-02T09:22:45,613 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf.py' 2022-12-02T09:22:45,615 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_rmsf_pc.py' 2022-12-02T09:22:45,617 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice.py' 2022-12-02T09:22:45,620 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_slice_pc.py' 2022-12-02T09:22:45,622 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot.py' 2022-12-02T09:22:45,624 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_snapshot_pc.py' 2022-12-02T09:22:45,626 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip.py' 2022-12-02T09:22:45,628 adding 'biobb_adapters/pycompss/biobb_analysis/ambertools/cpptraj_strip_pc.py' 2022-12-02T09:22:45,632 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/__init__.py' 2022-12-02T09:22:45,634 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster.py' 2022-12-02T09:22:45,636 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_cluster_pc.py' 2022-12-02T09:22:45,639 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy.py' 2022-12-02T09:22:45,641 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_energy_pc.py' 2022-12-02T09:22:45,643 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image.py' 2022-12-02T09:22:45,646 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_image_pc.py' 2022-12-02T09:22:45,648 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr.py' 2022-12-02T09:22:45,650 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rgyr_pc.py' 2022-12-02T09:22:45,652 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms.py' 2022-12-02T09:22:45,655 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_rms_pc.py' 2022-12-02T09:22:45,657 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str.py' 2022-12-02T09:22:45,659 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens.py' 2022-12-02T09:22:45,661 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_ens_pc.py' 2022-12-02T09:22:45,664 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_str_pc.py' 2022-12-02T09:22:45,666 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj.py' 2022-12-02T09:22:45,668 adding 'biobb_adapters/pycompss/biobb_analysis/gromacs/gmx_trjconv_trj_pc.py' 2022-12-02T09:22:45,671 adding 'biobb_adapters/pycompss/biobb_chemistry/__init__.py' 2022-12-02T09:22:45,674 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/__init__.py' 2022-12-02T09:22:45,677 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac.py' 2022-12-02T09:22:45,679 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_ac_pc.py' 2022-12-02T09:22:45,681 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns.py' 2022-12-02T09:22:45,684 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_cns_pc.py' 2022-12-02T09:22:45,686 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx.py' 2022-12-02T09:22:45,688 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2022-12-02T09:22:45,691 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_opls_pc.py' 2022-12-02T09:22:45,693 adding 'biobb_adapters/pycompss/biobb_chemistry/acpype/acpype_params_gmx_pc.py' 2022-12-02T09:22:45,696 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/__init__.py' 2022-12-02T09:22:45,698 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2022-12-02T09:22:45,701 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_add_hydrogens_pc.py' 2022-12-02T09:22:45,703 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2022-12-02T09:22:45,705 adding 'biobb_adapters/pycompss/biobb_chemistry/ambertools/reduce_remove_hydrogens_pc.py' 2022-12-02T09:22:45,708 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/__init__.py' 2022-12-02T09:22:45,711 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens.py' 2022-12-02T09:22:45,713 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_add_hydrogens_pc.py' 2022-12-02T09:22:45,715 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert.py' 2022-12-02T09:22:45,717 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_convert_pc.py' 2022-12-02T09:22:45,720 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize.py' 2022-12-02T09:22:45,722 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_minimize_pc.py' 2022-12-02T09:22:45,724 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens.py' 2022-12-02T09:22:45,726 adding 'biobb_adapters/pycompss/biobb_chemistry/babelm/babel_remove_hydrogens_pc.py' 2022-12-02T09:22:45,729 adding 'biobb_adapters/pycompss/biobb_cmip/__init__.py' 2022-12-02T09:22:45,733 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/__init__.py' 2022-12-02T09:22:45,735 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/cmip.py' 2022-12-02T09:22:45,738 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/ignore_residues.py' 2022-12-02T09:22:45,740 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_pdb.py' 2022-12-02T09:22:45,742 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/prepare_structure.py' 2022-12-02T09:22:45,744 adding 'biobb_adapters/pycompss/biobb_cmip/cmip/titration.py' 2022-12-02T09:22:45,747 adding 'biobb_adapters/pycompss/biobb_commons/__init__.py' 2022-12-02T09:22:45,750 adding 'biobb_adapters/pycompss/biobb_commons/task_config.py' 2022-12-02T09:22:45,753 adding 'biobb_adapters/pycompss/biobb_io/__init__.py' 2022-12-02T09:22:45,756 adding 'biobb_adapters/pycompss/biobb_io/api/__init__.py' 2022-12-02T09:22:45,759 adding 'biobb_adapters/pycompss/biobb_io/api/api_binding_site.py' 2022-12-02T09:22:45,761 adding 'biobb_adapters/pycompss/biobb_io/api/binding_site.py' 2022-12-02T09:22:45,764 adding 'biobb_adapters/pycompss/biobb_io/api/canonical_fasta.py' 2022-12-02T09:22:45,766 adding 'biobb_adapters/pycompss/biobb_io/api/drugbank.py' 2022-12-02T09:22:45,768 adding 'biobb_adapters/pycompss/biobb_io/api/ideal_sdf.py' 2022-12-02T09:22:45,770 adding 'biobb_adapters/pycompss/biobb_io/api/ligand.py' 2022-12-02T09:22:45,772 adding 'biobb_adapters/pycompss/biobb_io/api/ligand_pc.py' 2022-12-02T09:22:45,775 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim.py' 2022-12-02T09:22:45,777 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_list.py' 2022-12-02T09:22:45,779 adding 'biobb_adapters/pycompss/biobb_io/api/memprotmd_sim_search.py' 2022-12-02T09:22:45,781 adding 'biobb_adapters/pycompss/biobb_io/api/mmcif.py' 2022-12-02T09:22:45,784 adding 'biobb_adapters/pycompss/biobb_io/api/pdb.py' 2022-12-02T09:22:45,786 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip.py' 2022-12-02T09:22:45,788 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_cluster_zip_pc.py' 2022-12-02T09:22:45,790 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_pc.py' 2022-12-02T09:22:45,793 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants.py' 2022-12-02T09:22:45,795 adding 'biobb_adapters/pycompss/biobb_io/api/pdb_variants_pc.py' 2022-12-02T09:22:45,797 adding 'biobb_adapters/pycompss/biobb_io/api/structure_info.py' 2022-12-02T09:22:45,800 adding 'biobb_adapters/pycompss/biobb_md/__init__.py' 2022-12-02T09:22:45,804 adding 'biobb_adapters/pycompss/biobb_md/gromacs/__init__.py' 2022-12-02T09:22:45,806 adding 'biobb_adapters/pycompss/biobb_md/gromacs/editconf.py' 2022-12-02T09:22:45,808 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genion.py' 2022-12-02T09:22:45,810 adding 'biobb_adapters/pycompss/biobb_md/gromacs/genrestr.py' 2022-12-02T09:22:45,813 adding 'biobb_adapters/pycompss/biobb_md/gromacs/gmxselect.py' 2022-12-02T09:22:45,815 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp.py' 2022-12-02T09:22:45,817 adding 'biobb_adapters/pycompss/biobb_md/gromacs/grompp_mdrun.py' 2022-12-02T09:22:45,820 adding 'biobb_adapters/pycompss/biobb_md/gromacs/make_ndx.py' 2022-12-02T09:22:45,823 adding 'biobb_adapters/pycompss/biobb_md/gromacs/mdrun.py' 2022-12-02T09:22:45,825 adding 'biobb_adapters/pycompss/biobb_md/gromacs/pdb2gmx.py' 2022-12-02T09:22:45,827 adding 'biobb_adapters/pycompss/biobb_md/gromacs/solvate.py' 2022-12-02T09:22:45,831 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/__init__.py' 2022-12-02T09:22:45,833 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand.py' 2022-12-02T09:22:45,835 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/append_ligand_pc.py' 2022-12-02T09:22:45,837 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop.py' 2022-12-02T09:22:45,840 adding 'biobb_adapters/pycompss/biobb_md/gromacs_extra/ndx2resttop_pc.py' 2022-12-02T09:22:45,843 adding 'biobb_adapters/pycompss/biobb_ml/__init__.py' 2022-12-02T09:22:45,847 adding 'biobb_adapters/pycompss/biobb_ml/classification/__init__.py' 2022-12-02T09:22:45,849 adding 'biobb_adapters/pycompss/biobb_ml/classification/classification_predict.py' 2022-12-02T09:22:45,851 adding 'biobb_adapters/pycompss/biobb_ml/classification/decision_tree.py' 2022-12-02T09:22:45,854 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors.py' 2022-12-02T09:22:45,856 adding 'biobb_adapters/pycompss/biobb_ml/classification/k_neighbors_coefficient.py' 2022-12-02T09:22:45,859 adding 'biobb_adapters/pycompss/biobb_ml/classification/logistic_regression.py' 2022-12-02T09:22:45,861 adding 'biobb_adapters/pycompss/biobb_ml/classification/random_forest_classifier.py' 2022-12-02T09:22:45,864 adding 'biobb_adapters/pycompss/biobb_ml/classification/support_vector_machine.py' 2022-12-02T09:22:45,867 adding 'biobb_adapters/pycompss/biobb_ml/clustering/__init__.py' 2022-12-02T09:22:45,869 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_clustering.py' 2022-12-02T09:22:45,872 adding 'biobb_adapters/pycompss/biobb_ml/clustering/agglomerative_coefficient.py' 2022-12-02T09:22:45,874 adding 'biobb_adapters/pycompss/biobb_ml/clustering/clustering_predict.py' 2022-12-02T09:22:45,877 adding 'biobb_adapters/pycompss/biobb_ml/clustering/dbscan.py' 2022-12-02T09:22:45,879 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means.py' 2022-12-02T09:22:45,881 adding 'biobb_adapters/pycompss/biobb_ml/clustering/k_means_coefficient.py' 2022-12-02T09:22:45,884 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_clustering.py' 2022-12-02T09:22:45,886 adding 'biobb_adapters/pycompss/biobb_ml/clustering/spectral_coefficient.py' 2022-12-02T09:22:45,889 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/__init__.py' 2022-12-02T09:22:45,892 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_components.py' 2022-12-02T09:22:45,894 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/pls_regression.py' 2022-12-02T09:22:45,897 adding 'biobb_adapters/pycompss/biobb_ml/dimensionality_reduction/principal_component.py' 2022-12-02T09:22:45,900 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/__init__.py' 2022-12-02T09:22:45,902 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/autoencoder_neural_network.py' 2022-12-02T09:22:45,905 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/classification_neural_network.py' 2022-12-02T09:22:45,907 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_decode.py' 2022-12-02T09:22:45,910 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/neural_network_predict.py' 2022-12-02T09:22:45,912 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/recurrent_neural_network.py' 2022-12-02T09:22:45,914 adding 'biobb_adapters/pycompss/biobb_ml/neural_networks/regression_neural_network.py' 2022-12-02T09:22:45,917 adding 'biobb_adapters/pycompss/biobb_ml/regression/__init__.py' 2022-12-02T09:22:45,920 adding 'biobb_adapters/pycompss/biobb_ml/regression/linear_regression.py' 2022-12-02T09:22:45,922 adding 'biobb_adapters/pycompss/biobb_ml/regression/polynomial_regression.py' 2022-12-02T09:22:45,925 adding 'biobb_adapters/pycompss/biobb_ml/regression/random_forest_regressor.py' 2022-12-02T09:22:45,927 adding 'biobb_adapters/pycompss/biobb_ml/regression/regression_predict.py' 2022-12-02T09:22:45,930 adding 'biobb_adapters/pycompss/biobb_ml/resampling/__init__.py' 2022-12-02T09:22:45,933 adding 'biobb_adapters/pycompss/biobb_ml/resampling/oversampling.py' 2022-12-02T09:22:45,935 adding 'biobb_adapters/pycompss/biobb_ml/resampling/resampling.py' 2022-12-02T09:22:45,937 adding 'biobb_adapters/pycompss/biobb_ml/resampling/undersampling.py' 2022-12-02T09:22:45,940 adding 'biobb_adapters/pycompss/biobb_ml/utils/__init__.py' 2022-12-02T09:22:45,943 adding 'biobb_adapters/pycompss/biobb_ml/utils/correlation_matrix.py' 2022-12-02T09:22:45,945 adding 'biobb_adapters/pycompss/biobb_ml/utils/dendrogram.py' 2022-12-02T09:22:45,947 adding 'biobb_adapters/pycompss/biobb_ml/utils/drop_columns.py' 2022-12-02T09:22:45,950 adding 'biobb_adapters/pycompss/biobb_ml/utils/dummy_variables.py' 2022-12-02T09:22:45,953 adding 'biobb_adapters/pycompss/biobb_ml/utils/map_variables.py' 2022-12-02T09:22:45,955 adding 'biobb_adapters/pycompss/biobb_ml/utils/pairwise_comparison.py' 2022-12-02T09:22:45,957 adding 'biobb_adapters/pycompss/biobb_ml/utils/scale_columns.py' 2022-12-02T09:22:45,961 adding 'biobb_adapters/pycompss/biobb_model/__init__.py' 2022-12-02T09:22:45,964 adding 'biobb_adapters/pycompss/biobb_model/model/__init__.py' 2022-12-02T09:22:45,966 adding 'biobb_adapters/pycompss/biobb_model/model/checking_log.py' 2022-12-02T09:22:45,969 adding 'biobb_adapters/pycompss/biobb_model/model/fix_altlocs.py' 2022-12-02T09:22:45,972 adding 'biobb_adapters/pycompss/biobb_model/model/fix_amides.py' 2022-12-02T09:22:45,974 adding 'biobb_adapters/pycompss/biobb_model/model/fix_backbone.py' 2022-12-02T09:22:45,976 adding 'biobb_adapters/pycompss/biobb_model/model/fix_chirality.py' 2022-12-02T09:22:45,979 adding 'biobb_adapters/pycompss/biobb_model/model/fix_pdb.py' 2022-12-02T09:22:45,981 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain.py' 2022-12-02T09:22:45,983 adding 'biobb_adapters/pycompss/biobb_model/model/fix_side_chain_pc.py' 2022-12-02T09:22:45,986 adding 'biobb_adapters/pycompss/biobb_model/model/fix_ssbonds.py' 2022-12-02T09:22:45,988 adding 'biobb_adapters/pycompss/biobb_model/model/mutate.py' 2022-12-02T09:22:45,991 adding 'biobb_adapters/pycompss/biobb_model/model/mutate_pc.py' 2022-12-02T09:22:45,994 adding 'biobb_adapters/pycompss/biobb_pmx/__init__.py' 2022-12-02T09:22:45,997 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/__init__.py' 2022-12-02T09:22:45,999 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/analyse_pc.py' 2022-12-02T09:22:46,002 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/gentop_pc.py' 2022-12-02T09:22:46,004 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_bst_pc.py' 2022-12-02T09:22:46,006 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/mutate_pc.py' 2022-12-02T09:22:46,009 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxanalyse.py' 2022-12-02T09:22:46,011 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxatom_mapping.py' 2022-12-02T09:22:46,014 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxcreate_top.py' 2022-12-02T09:22:46,016 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxgentop.py' 2022-12-02T09:22:46,018 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxligand_hybrid.py' 2022-12-02T09:22:46,021 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmerge_ff.py' 2022-12-02T09:22:46,023 adding 'biobb_adapters/pycompss/biobb_pmx/pmx/pmxmutate.py' 2022-12-02T09:22:46,026 adding 'biobb_adapters/pycompss/biobb_structure_utils/__init__.py' 2022-12-02T09:22:46,031 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/__init__.py' 2022-12-02T09:22:46,033 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb.py' 2022-12-02T09:22:46,035 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/cat_pdb_pc.py' 2022-12-02T09:22:46,037 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/closest_residues.py' 2022-12-02T09:22:46,040 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms.py' 2022-12-02T09:22:46,042 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_atoms_pc.py' 2022-12-02T09:22:46,045 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain.py' 2022-12-02T09:22:46,047 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_chain_pc.py' 2022-12-02T09:22:46,049 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms.py' 2022-12-02T09:22:46,051 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_heteroatoms_pc.py' 2022-12-02T09:22:46,054 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model.py' 2022-12-02T09:22:46,056 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_model_pc.py' 2022-12-02T09:22:46,058 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_molecule.py' 2022-12-02T09:22:46,061 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein.py' 2022-12-02T09:22:46,063 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_protein_pc.py' 2022-12-02T09:22:46,065 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/extract_residues.py' 2022-12-02T09:22:46,068 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand.py' 2022-12-02T09:22:46,070 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_ligand_pc.py' 2022-12-02T09:22:46,072 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_molecules.py' 2022-12-02T09:22:46,074 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water.py' 2022-12-02T09:22:46,077 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/remove_pdb_water_pc.py' 2022-12-02T09:22:46,079 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structure.py' 2022-12-02T09:22:46,081 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/renumber_structures_pc.py' 2022-12-02T09:22:46,084 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues.py' 2022-12-02T09:22:46,086 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/sort_gro_residues_pc.py' 2022-12-02T09:22:46,088 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/str_check_add_hydrogens.py' 2022-12-02T09:22:46,091 adding 'biobb_adapters/pycompss/biobb_structure_utils/utils/structure_check.py' 2022-12-02T09:22:46,094 adding 'biobb_adapters/pycompss/biobb_vs/__init__.py' 2022-12-02T09:22:46,097 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/__init__.py' 2022-12-02T09:22:46,100 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket.py' 2022-12-02T09:22:46,102 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_filter.py' 2022-12-02T09:22:46,105 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_run.py' 2022-12-02T09:22:46,107 adding 'biobb_adapters/pycompss/biobb_vs/fpocket/fpocket_select.py' 2022-12-02T09:22:46,110 adding 'biobb_adapters/pycompss/biobb_vs/utils/__init__.py' 2022-12-02T09:22:46,113 adding 'biobb_adapters/pycompss/biobb_vs/utils/bindingsite.py' 2022-12-02T09:22:46,115 adding 'biobb_adapters/pycompss/biobb_vs/utils/box.py' 2022-12-02T09:22:46,117 adding 'biobb_adapters/pycompss/biobb_vs/utils/box_residues.py' 2022-12-02T09:22:46,120 adding 'biobb_adapters/pycompss/biobb_vs/utils/extract_model_pdbqt.py' 2022-12-02T09:22:46,123 adding 'biobb_adapters/pycompss/biobb_vs/vina/__init__.py' 2022-12-02T09:22:46,125 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina.py' 2022-12-02T09:22:46,128 adding 'biobb_adapters/pycompss/biobb_vs/vina/autodock_vina_run.py' 2022-12-02T09:22:46,132 adding 'biobb_adapters-3.8.1.dist-info/METADATA' 2022-12-02T09:22:46,134 adding 'biobb_adapters-3.8.1.dist-info/WHEEL' 2022-12-02T09:22:46,135 adding 'biobb_adapters-3.8.1.dist-info/top_level.txt' 2022-12-02T09:22:46,165 adding 'biobb_adapters-3.8.1.dist-info/RECORD' 2022-12-02T09:22:46,624 removing build/bdist.linux-armv7l/wheel 2022-12-02T09:22:47,367 Building wheel for biobb-adapters (setup.py): finished with status 'done' 2022-12-02T09:22:48,569 Created wheel for biobb-adapters: filename=biobb_adapters-3.8.1-py3-none-any.whl size=40234616 sha256=7a3438d481b9100a9515c17f6a2c639a03c777ef4bfcf0cf98a0402e52e7361e 2022-12-02T09:22:48,571 Stored in directory: /tmp/pip-ephem-wheel-cache-qk0gycn5/wheels/f2/ad/23/e9b78b2b8645965f1c775e800c3ee2140512b35b547ed0abe2 2022-12-02T09:22:48,697 Successfully built biobb-adapters 2022-12-02T09:22:51,713 Removed build tracker: '/tmp/pip-build-tracker-07bq0naz'