2022-12-03T16:43:02,820 Created temporary directory: /tmp/pip-ephem-wheel-cache-z2_tsn3r 2022-12-03T16:43:02,825 Created temporary directory: /tmp/pip-build-tracker-aefx6itn 2022-12-03T16:43:02,825 Initialized build tracking at /tmp/pip-build-tracker-aefx6itn 2022-12-03T16:43:02,826 Created build tracker: /tmp/pip-build-tracker-aefx6itn 2022-12-03T16:43:02,826 Entered build tracker: /tmp/pip-build-tracker-aefx6itn 2022-12-03T16:43:02,827 Created temporary directory: /tmp/pip-wheel-ng4hpfyt 2022-12-03T16:43:02,835 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-03T16:43:02,840 Created temporary directory: /tmp/pip-ephem-wheel-cache-49s0ktat 2022-12-03T16:43:02,891 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-03T16:43:02,898 2 location(s) to search for versions of pyhmmer: 2022-12-03T16:43:02,898 * https://pypi.org/simple/pyhmmer/ 2022-12-03T16:43:02,898 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-03T16:43:02,899 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-03T16:43:02,900 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-03T16:43:02,903 Found index url https://pypi.org/simple 2022-12-03T16:43:03,238 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-03T16:43:03,476 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-03T16:43:03,495 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-03T16:43:03,495 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-03T16:43:03,496 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-12-03T16:43:03,625 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,625 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,626 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-03T16:43:03,648 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,649 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,649 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,669 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,670 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,671 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-03T16:43:03,672 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,672 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,673 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,675 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,676 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,676 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,677 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,677 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,679 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-03T16:43:03,679 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,680 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,680 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,720 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,720 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,721 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,721 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,722 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,722 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,723 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,723 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,725 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-03T16:43:03,725 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,726 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,726 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,727 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,728 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,728 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,729 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,729 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,730 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,730 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,731 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,731 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,732 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,732 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,733 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,734 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-12-03T16:43:03,735 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,735 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,736 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,736 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,737 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,737 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,738 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/6c/66722b1c98eb72b6f2264cda1392461ba1a7beefcca6e6d56edb7a58baab/pyhmmer-0.7.0rc1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,739 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e7/66/7146d3ffbb6917adcb31600e6b5037ecaafdf2198efaabe8b26519d3aad1/pyhmmer-0.7.0rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,745 Found link https://files.pythonhosted.org/packages/07/f9/aa30f9a062a03215706fd914a193d012c869409f0883406963f5097ec7f1/pyhmmer-0.7.0rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc1 2022-12-03T16:43:03,745 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/64/27ba87f3a6b5bd028bde8e63579e4fc7729abb207b6e9e700cbf51dc7b30/pyhmmer-0.7.0rc2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,746 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,748 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,749 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,749 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,750 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,750 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,751 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,751 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,752 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,752 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/d2/b4d94b6921db1e4c69e9f41bb559d66fe18a2a098cde1e6434706e1eabc6/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,753 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/55/c39dc94317204fd84d5d8bbb6aed951be0706970eb5e3998aa0a4a35f46b/pyhmmer-0.7.0rc2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,753 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f2/b9/46f7e47792b6dcd5d3330313efceea13105448ae6f6cb13af72cb60427d1/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,754 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,755 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2022-12-03T16:43:03,756 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,756 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/8b/45d7eb18b457d0a36bacee35ad14a52af74c6ad5eab2901492996e9aa4b7/pyhmmer-0.7.0rc3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,757 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/75/25d2b67c70032fd8201bcead370e87316ed0531854aaf2b9f3061623fe33/pyhmmer-0.7.0rc3-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,758 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/f3/a6f3b814701a7fc0652810dcdeaaf6a60aaf90d30de21ca7c2fb873b5762/pyhmmer-0.7.0rc3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,758 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,759 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,759 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,760 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/1e/19f92118d755272eba30bfa611635be0d67428d65dfc5c5ecd544e45e0ad/pyhmmer-0.7.0rc3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,760 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ff/2c/bf48a68a87561fa1e263ca6cb00d1345794280070dd484845aa2d4cf8844/pyhmmer-0.7.0rc3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,761 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/67/2c8cd7621f44f1cd92ec244a9463c00c90f02a1fd5efe1be5617828055cf/pyhmmer-0.7.0rc3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,761 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/73/a2db2e27de1d9b6006d6db695b5238e850b9431ea7c57eea6988a6664b31/pyhmmer-0.7.0rc3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,762 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/599a1e9f081d8e5daa34f62c9225012ba906ae872d426f4b74a3a9d5b4fe/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,762 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/d7/389876620f3b9fe1feea99c9b6b482d8b1f115671c06fbaa92bda816c189/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,763 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/90/e1/dcccd398039ac13a2a23114fe29ba40a1270c0498b9c7d15dccf098d02db/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,763 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/22/86eaea1f4be5e5dd587f216169ba9f7a445b166b719c4fb364df45cf5eb8/pyhmmer-0.7.0rc3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,764 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b2/50/e377323457ca4ac99d9a374e5a2d23cefc1007eedd186a1e33a4ed5531fd/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,764 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/99/f426e48fd4c851ff69b0d669d9c7f782c7c8c0a4b753dd93d7dcdc18a91f/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-03T16:43:03,766 Found link https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc3 2022-12-03T16:43:03,767 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-03T16:43:03,767 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-03T16:43:03,770 Found index url https://www.piwheels.org/simple 2022-12-03T16:43:03,987 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-03T16:43:03,989 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-03T16:43:03,990 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-03T16:43:04,036 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-03T16:43:04,066 Collecting pyhmmer==0.7.0rc3 2022-12-03T16:43:04,070 Created temporary directory: /tmp/pip-unpack-gzkm6rx2 2022-12-03T16:43:04,713 Downloading pyhmmer-0.7.0rc3.tar.gz (11.0 MB) 2022-12-03T16:43:14,080 Added pyhmmer==0.7.0rc3 from https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz to build tracker '/tmp/pip-build-tracker-aefx6itn' 2022-12-03T16:43:14,090 Created temporary directory: /tmp/pip-build-env-qn8h82ok 2022-12-03T16:43:14,102 Installing build dependencies: started 2022-12-03T16:43:14,104 Running command pip subprocess to install build dependencies 2022-12-03T16:43:16,791 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-03T16:43:17,578 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-03T16:43:17,631 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-03T16:43:21,533 Collecting setuptools>=46.4 2022-12-03T16:43:21,826 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-03T16:43:25,029 Collecting cython~=0.29.16 2022-12-03T16:43:25,518 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-03T16:43:31,232 Installing collected packages: setuptools, cython 2022-12-03T16:43:41,213 Creating /tmp/pip-build-env-qn8h82ok/overlay/bin 2022-12-03T16:43:41,217 changing mode of /tmp/pip-build-env-qn8h82ok/overlay/bin/cygdb to 755 2022-12-03T16:43:41,221 changing mode of /tmp/pip-build-env-qn8h82ok/overlay/bin/cython to 755 2022-12-03T16:43:41,226 changing mode of /tmp/pip-build-env-qn8h82ok/overlay/bin/cythonize to 755 2022-12-03T16:43:41,272 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-03T16:43:41,303 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-03T16:43:41,303 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-03T16:43:41,799 Installing build dependencies: finished with status 'done' 2022-12-03T16:43:41,811 Getting requirements to build wheel: started 2022-12-03T16:43:41,813 Running command Getting requirements to build wheel 2022-12-03T16:43:44,536 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-03T16:43:44,754 Getting requirements to build wheel: finished with status 'done' 2022-12-03T16:43:44,790 Installing backend dependencies: started 2022-12-03T16:43:44,793 Running command pip subprocess to install backend dependencies 2022-12-03T16:43:47,524 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-03T16:43:48,323 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-03T16:43:48,377 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-03T16:43:49,232 Collecting wheel 2022-12-03T16:43:49,430 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-03T16:43:54,095 Installing collected packages: wheel 2022-12-03T16:43:54,374 Creating /tmp/pip-build-env-qn8h82ok/normal/bin 2022-12-03T16:43:54,379 changing mode of /tmp/pip-build-env-qn8h82ok/normal/bin/wheel to 755 2022-12-03T16:43:54,406 Successfully installed wheel-0.38.4 2022-12-03T16:43:54,436 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-03T16:43:54,437 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-03T16:43:54,795 Installing backend dependencies: finished with status 'done' 2022-12-03T16:43:54,800 Created temporary directory: /tmp/pip-modern-metadata-89f_6j1n 2022-12-03T16:43:54,807 Preparing metadata (pyproject.toml): started 2022-12-03T16:43:54,809 Running command Preparing metadata (pyproject.toml) 2022-12-03T16:43:57,532 running dist_info 2022-12-03T16:43:57,564 creating /tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info 2022-12-03T16:43:57,574 writing /tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/PKG-INFO 2022-12-03T16:43:57,580 writing dependency_links to /tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/dependency_links.txt 2022-12-03T16:43:57,585 writing requirements to /tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/requires.txt 2022-12-03T16:43:57,587 writing top-level names to /tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/top_level.txt 2022-12-03T16:43:57,589 writing manifest file '/tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/SOURCES.txt' 2022-12-03T16:43:57,703 reading manifest file '/tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/SOURCES.txt' 2022-12-03T16:43:57,710 reading manifest template 'MANIFEST.in' 2022-12-03T16:43:58,967 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-03T16:43:58,967 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-03T16:43:58,971 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-03T16:43:58,975 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-03T16:43:58,979 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-03T16:43:58,982 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-03T16:43:58,986 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-03T16:43:58,989 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-03T16:43:58,992 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-03T16:43:58,996 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-03T16:43:58,999 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-03T16:43:59,002 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-03T16:43:59,006 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-03T16:43:59,009 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-03T16:43:59,012 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-03T16:43:59,013 adding license file 'COPYING' 2022-12-03T16:43:59,085 writing manifest file '/tmp/pip-modern-metadata-89f_6j1n/pyhmmer.egg-info/SOURCES.txt' 2022-12-03T16:43:59,089 creating '/tmp/pip-modern-metadata-89f_6j1n/pyhmmer-0.7.0rc3.dist-info' 2022-12-03T16:43:59,482 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-03T16:43:59,499 Source in /tmp/pip-wheel-ng4hpfyt/pyhmmer_788c45e0cacb418e9e73f13ef05dbb3f has version 0.7.0rc3, which satisfies requirement pyhmmer==0.7.0rc3 from https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz 2022-12-03T16:43:59,501 Removed pyhmmer==0.7.0rc3 from https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz from build tracker '/tmp/pip-build-tracker-aefx6itn' 2022-12-03T16:43:59,518 Created temporary directory: /tmp/pip-unpack-mqk9vzgr 2022-12-03T16:43:59,519 Building wheels for collected packages: pyhmmer 2022-12-03T16:43:59,528 Created temporary directory: /tmp/pip-wheel-xb7_3t9l 2022-12-03T16:43:59,529 Destination directory: /tmp/pip-wheel-xb7_3t9l 2022-12-03T16:43:59,534 Building wheel for pyhmmer (pyproject.toml): started 2022-12-03T16:43:59,536 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-03T16:44:02,178 running bdist_wheel 2022-12-03T16:44:02,208 running build 2022-12-03T16:44:02,209 running build_py 2022-12-03T16:44:02,226 creating build 2022-12-03T16:44:02,227 creating build/lib.linux-armv7l-cpython-37 2022-12-03T16:44:02,229 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:02,231 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:02,235 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:02,244 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:02,249 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,251 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,255 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,258 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,262 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,267 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:02,274 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,275 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,279 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,283 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,287 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,291 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,296 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,300 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,305 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,309 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,314 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,318 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,323 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,328 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-03T16:44:02,334 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,337 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,341 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,346 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,350 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,355 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,359 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,364 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,369 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,374 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,378 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,384 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,388 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,393 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-03T16:44:02,396 running egg_info 2022-12-03T16:44:02,433 writing pyhmmer.egg-info/PKG-INFO 2022-12-03T16:44:02,439 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-03T16:44:02,444 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-03T16:44:02,447 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-03T16:44:02,483 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-03T16:44:02,529 reading manifest template 'MANIFEST.in' 2022-12-03T16:44:03,678 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-03T16:44:03,678 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-03T16:44:03,686 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-03T16:44:03,691 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-03T16:44:03,697 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-03T16:44:03,702 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-03T16:44:03,707 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-03T16:44:03,713 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-03T16:44:03,718 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-03T16:44:03,724 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-03T16:44:03,729 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-03T16:44:03,735 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-03T16:44:03,740 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-03T16:44:03,745 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-03T16:44:03,751 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-03T16:44:03,752 adding license file 'COPYING' 2022-12-03T16:44:03,850 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-03T16:44:03,879 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,879 !! 2022-12-03T16:44:03,880 ############################ 2022-12-03T16:44:03,880 # Package would be ignored # 2022-12-03T16:44:03,881 ############################ 2022-12-03T16:44:03,881 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-03T16:44:03,881 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,882 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-03T16:44:03,882 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,882 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,883 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-03T16:44:03,883 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,884 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,884 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,885 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,885 documentation page. 2022-12-03T16:44:03,886 !! 2022-12-03T16:44:03,887 check.warn(importable) 2022-12-03T16:44:03,887 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,887 !! 2022-12-03T16:44:03,888 ############################ 2022-12-03T16:44:03,888 # Package would be ignored # 2022-12-03T16:44:03,889 ############################ 2022-12-03T16:44:03,889 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-03T16:44:03,889 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,890 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-03T16:44:03,890 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,890 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,891 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-03T16:44:03,891 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,892 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,892 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,893 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,893 documentation page. 2022-12-03T16:44:03,894 !! 2022-12-03T16:44:03,894 check.warn(importable) 2022-12-03T16:44:03,895 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,895 !! 2022-12-03T16:44:03,896 ############################ 2022-12-03T16:44:03,896 # Package would be ignored # 2022-12-03T16:44:03,896 ############################ 2022-12-03T16:44:03,897 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-03T16:44:03,897 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,898 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-03T16:44:03,898 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,898 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,899 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-03T16:44:03,899 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,899 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,900 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,900 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,900 documentation page. 2022-12-03T16:44:03,901 !! 2022-12-03T16:44:03,902 check.warn(importable) 2022-12-03T16:44:03,902 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,902 !! 2022-12-03T16:44:03,903 ############################ 2022-12-03T16:44:03,904 # Package would be ignored # 2022-12-03T16:44:03,904 ############################ 2022-12-03T16:44:03,904 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-03T16:44:03,904 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,905 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-03T16:44:03,905 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,906 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,906 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-03T16:44:03,906 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,907 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,907 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,908 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,908 documentation page. 2022-12-03T16:44:03,909 !! 2022-12-03T16:44:03,909 check.warn(importable) 2022-12-03T16:44:03,910 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,910 !! 2022-12-03T16:44:03,911 ############################ 2022-12-03T16:44:03,911 # Package would be ignored # 2022-12-03T16:44:03,911 ############################ 2022-12-03T16:44:03,912 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-03T16:44:03,912 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,912 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-03T16:44:03,913 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,913 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,914 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-03T16:44:03,914 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,914 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,915 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,915 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,915 documentation page. 2022-12-03T16:44:03,916 !! 2022-12-03T16:44:03,917 check.warn(importable) 2022-12-03T16:44:03,917 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,917 !! 2022-12-03T16:44:03,918 ############################ 2022-12-03T16:44:03,918 # Package would be ignored # 2022-12-03T16:44:03,919 ############################ 2022-12-03T16:44:03,919 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-03T16:44:03,919 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,920 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-03T16:44:03,920 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,920 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,921 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-03T16:44:03,921 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,922 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,922 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,922 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,923 documentation page. 2022-12-03T16:44:03,924 !! 2022-12-03T16:44:03,924 check.warn(importable) 2022-12-03T16:44:03,924 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,925 !! 2022-12-03T16:44:03,926 ############################ 2022-12-03T16:44:03,926 # Package would be ignored # 2022-12-03T16:44:03,926 ############################ 2022-12-03T16:44:03,926 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-03T16:44:03,927 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,927 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-03T16:44:03,928 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,928 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,928 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-03T16:44:03,929 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,929 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,930 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,930 documentation page. 2022-12-03T16:44:03,931 !! 2022-12-03T16:44:03,932 check.warn(importable) 2022-12-03T16:44:03,932 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-03T16:44:03,932 !! 2022-12-03T16:44:03,933 ############################ 2022-12-03T16:44:03,934 # Package would be ignored # 2022-12-03T16:44:03,934 ############################ 2022-12-03T16:44:03,934 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-03T16:44:03,934 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:44:03,935 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-03T16:44:03,935 because it may contain data files, but this behavior is likely to change 2022-12-03T16:44:03,936 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:44:03,936 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-03T16:44:03,936 the `packages` configuration field or the proper discovery methods 2022-12-03T16:44:03,937 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:44:03,937 instead of `find_packages(...)`/`find:`). 2022-12-03T16:44:03,938 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:44:03,938 documentation page. 2022-12-03T16:44:03,939 !! 2022-12-03T16:44:03,939 check.warn(importable) 2022-12-03T16:44:03,957 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,961 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,966 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,972 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,977 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,983 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:03,999 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,003 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,008 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,013 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,018 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,025 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,048 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-03T16:44:04,051 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-03T16:44:04,053 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-03T16:44:04,058 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-03T16:44:04,062 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,064 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,068 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,071 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,076 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,079 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,083 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,087 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-03T16:44:04,091 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-03T16:44:04,095 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-03T16:44:04,096 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-03T16:44:04,100 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-03T16:44:04,102 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-03T16:44:04,106 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-03T16:44:04,107 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-03T16:44:04,114 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-03T16:44:04,122 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-03T16:44:04,129 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-03T16:44:04,266 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,268 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,278 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,283 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,287 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,294 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,301 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,315 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,321 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,325 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,335 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,343 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,353 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,359 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,363 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,370 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,378 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,656 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,725 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,729 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:04,881 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-03T16:44:05,024 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,027 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,042 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,051 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,064 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,075 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,094 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,121 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-03T16:44:05,421 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-03T16:44:05,423 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-03T16:44:05,431 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-03T16:44:05,442 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-03T16:44:05,451 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-03T16:44:05,685 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-03T16:44:05,687 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-03T16:44:05,692 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-03T16:44:05,697 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-03T16:44:05,701 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-03T16:44:05,704 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-03T16:44:05,709 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-03T16:44:05,715 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-03T16:44:05,720 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-03T16:44:05,726 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,728 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,774 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,787 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,929 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,939 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,944 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,949 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-03T16:44:05,953 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,955 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,960 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,965 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,970 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,974 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,978 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,982 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,989 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:05,994 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-03T16:44:06,008 running build_clib 2022-12-03T16:44:06,026 creating build/temp.linux-armv7l-cpython-37 2022-12-03T16:44:06,028 generating "divsufsort.h" for divsufsort library 2022-12-03T16:44:06,029 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-03T16:44:06,033 generating "esl_config.h" for easel library 2022-12-03T16:44:17,225 generating "p7_config.h" for hmmer library 2022-12-03T16:44:29,518 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-03T16:44:29,543 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-03T16:44:29,571 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-03T16:44:29,609 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-03T16:44:29,611 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-03T16:44:29,611 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-03T16:44:29,613 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-03T16:44:29,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-03T16:44:38,537 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-03T16:44:38,595 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_exponential.c, vendor/easel/esl_red_black.c, vendor/easel/esl_random.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_normal.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_msafile.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_mem.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_json.c, vendor/easel/esl_avx512.c, vendor/easel/esl_arr2.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gencode.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sse.c, vendor/easel/esl_wuss.c, vendor/easel/esl_histogram.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_weibull.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_ssi.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_neon.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sq.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_getopts.c, vendor/easel/esl_cluster.c, vendor/easel/esl_mpi.c, vendor/easel/esl_distance.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msa.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_swat.c, vendor/easel/esl_graph.c, vendor/easel/esl_alloc.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_hmm.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_varint.c, vendor/easel/easel.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_tree.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_gev.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_fileparser.c, vendor/easel/interface_lapack.c, vendor/easel/esl_vmx.c, vendor/easel/esl_arr3.c, vendor/easel/esl_threads.c, vendor/easel/esl_heap.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_rand64.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_stack.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-03T16:44:38,604 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-03T16:44:38,605 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-03T16:44:38,607 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-03T16:44:38,608 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-03T16:44:38,608 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-03T16:44:38,609 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-03T16:44:38,610 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-03T16:44:38,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-03T16:44:38,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-03T16:44:38,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-03T16:44:38,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-03T16:44:39,544 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-03T16:44:39,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-03T16:44:39,940 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-03T16:44:39,941 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-03T16:44:39,941 for (i = 0; i < a; i++) 2022-12-03T16:44:39,942 ^ 2022-12-03T16:44:40,462 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-03T16:44:40,464 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-03T16:44:41,505 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-03T16:44:41,506 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-03T16:44:41,608 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-03T16:44:41,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-03T16:44:41,787 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-03T16:44:41,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-03T16:44:42,391 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-03T16:44:42,393 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-03T16:44:42,948 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-03T16:44:42,949 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-03T16:44:43,268 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-03T16:44:43,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-03T16:44:43,740 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-03T16:44:43,741 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-03T16:44:44,325 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-03T16:44:44,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-03T16:44:44,733 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-03T16:44:44,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-03T16:44:45,009 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-03T16:44:45,010 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-03T16:44:45,541 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-03T16:44:45,543 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-03T16:44:45,643 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-03T16:44:45,645 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-03T16:44:45,691 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-03T16:44:45,694 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-03T16:44:46,256 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-03T16:44:46,258 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-03T16:44:46,319 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-03T16:44:46,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-03T16:44:47,289 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-03T16:44:47,290 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:44:47,291 int flags; 2022-12-03T16:44:47,291 ^~~~~ 2022-12-03T16:44:47,966 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-03T16:44:47,967 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:44:47,968 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-03T16:44:47,968 ^ 2022-12-03T16:44:47,969 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-03T16:44:47,969 char *p; 2022-12-03T16:44:47,970 ^ 2022-12-03T16:44:48,374 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-03T16:44:48,376 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-03T16:44:48,988 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-03T16:44:48,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-03T16:44:49,605 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-03T16:44:49,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-03T16:44:50,660 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-03T16:44:50,662 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-03T16:44:50,878 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-03T16:44:50,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-03T16:44:51,115 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-03T16:44:51,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-03T16:44:51,570 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-03T16:44:51,570 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:44:51,571 return status; 2022-12-03T16:44:51,572 ^~~~~~ 2022-12-03T16:44:52,355 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-03T16:44:52,357 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-03T16:44:52,604 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-03T16:44:52,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-03T16:44:52,839 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-03T16:44:52,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-03T16:44:52,902 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-03T16:44:52,904 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-03T16:44:53,292 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-03T16:44:53,293 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-03T16:44:53,293 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:44:53,294 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:44:53,294 ^ 2022-12-03T16:44:53,295 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:44:53,295 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-03T16:44:53,296 ^~~~~~~ 2022-12-03T16:44:53,296 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:44:53,297 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:44:53,298 ^~~ 2022-12-03T16:44:53,298 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:44:53,299 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-03T16:44:53,299 ^~~~~~~ 2022-12-03T16:44:53,300 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:44:53,300 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:44:53,301 ^ 2022-12-03T16:44:53,301 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:44:53,302 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-03T16:44:53,302 ^~~~~~~ 2022-12-03T16:44:53,303 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:44:53,303 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:44:53,304 ^~~ 2022-12-03T16:44:53,304 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:44:53,305 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-03T16:44:53,305 ^~~~~~~ 2022-12-03T16:44:53,326 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-03T16:44:53,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-03T16:44:53,702 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-03T16:44:53,703 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:53,704 if (rank > h->n) 2022-12-03T16:44:53,704 ^ 2022-12-03T16:44:54,090 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-03T16:44:54,092 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-03T16:44:54,453 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-03T16:44:54,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-03T16:44:55,474 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-03T16:44:55,476 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-03T16:44:56,797 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-03T16:44:56,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-03T16:44:57,199 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-03T16:44:57,200 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:44:57,201 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-03T16:44:57,201 ^~ 2022-12-03T16:44:57,591 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-03T16:44:57,593 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-03T16:44:58,394 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-03T16:44:58,396 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-03T16:44:58,787 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-03T16:44:58,787 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,788 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-03T16:44:58,788 ^~ 2022-12-03T16:44:58,809 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-03T16:44:58,810 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,810 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-03T16:44:58,811 ^ 2022-12-03T16:44:58,818 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-03T16:44:58,819 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,819 if (n > ns->plen) ns->plen = n; 2022-12-03T16:44:58,820 ^ 2022-12-03T16:44:58,822 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,823 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-03T16:44:58,823 ^ 2022-12-03T16:44:58,824 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-03T16:44:58,825 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,825 if (n > ns->slen) ns->slen = n; 2022-12-03T16:44:58,826 ^ 2022-12-03T16:44:58,829 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,829 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-03T16:44:58,830 ^ 2022-12-03T16:44:58,840 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-03T16:44:58,841 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,841 for (i = 0; i < ns->nprimary; i++) 2022-12-03T16:44:58,842 ^ 2022-12-03T16:44:58,844 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,844 for (i = 0; i < ns->nprimary; i++) 2022-12-03T16:44:58,845 ^ 2022-12-03T16:44:58,846 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,847 for (i = 0; i < ns->nsecondary; i++) 2022-12-03T16:44:58,847 ^ 2022-12-03T16:44:58,849 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,850 for (i = 0; i < ns->nsecondary; i++) 2022-12-03T16:44:58,850 ^ 2022-12-03T16:44:58,857 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-03T16:44:58,858 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,858 for (i = 0; i < ns->nprimary; i++) 2022-12-03T16:44:58,858 ^ 2022-12-03T16:44:58,859 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,860 for (i = 0; i < ns->nsecondary; i++) 2022-12-03T16:44:58,860 ^ 2022-12-03T16:44:58,870 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-03T16:44:58,871 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,872 for (i = 0; i < ns->nprimary; i++) { 2022-12-03T16:44:58,872 ^ 2022-12-03T16:44:58,873 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,874 for (i = 0; i < ns->nsecondary; i++) 2022-12-03T16:44:58,874 ^ 2022-12-03T16:44:58,875 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,875 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-03T16:44:58,876 ^ 2022-12-03T16:44:58,876 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,877 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-03T16:44:58,877 ^ 2022-12-03T16:44:58,878 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:44:58,878 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-03T16:44:58,878 ^ 2022-12-03T16:44:58,922 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-03T16:44:58,925 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-03T16:44:59,043 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-03T16:44:59,045 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-03T16:44:59,261 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-03T16:44:59,263 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-03T16:44:59,605 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-03T16:44:59,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-03T16:44:59,640 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-03T16:44:59,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-03T16:44:59,655 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-03T16:44:59,656 static double stopwatch_getRealTime(void); 2022-12-03T16:44:59,656 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:00,069 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-03T16:45:00,071 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-03T16:45:00,443 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-03T16:45:00,444 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,445 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-03T16:45:00,445 ^~ 2022-12-03T16:45:00,446 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,446 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-03T16:45:00,447 ^~ 2022-12-03T16:45:00,448 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,448 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-03T16:45:00,449 ^~ 2022-12-03T16:45:00,471 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-03T16:45:00,472 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,472 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,472 ^~ 2022-12-03T16:45:00,474 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-03T16:45:00,474 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,475 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,475 ^~ 2022-12-03T16:45:00,476 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-03T16:45:00,476 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,477 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,477 ^~ 2022-12-03T16:45:00,482 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-03T16:45:00,483 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,483 if (status != eslOK || nres != W) { 2022-12-03T16:45:00,484 ^~ 2022-12-03T16:45:00,484 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,485 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,485 ^~ 2022-12-03T16:45:00,506 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-03T16:45:00,507 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,507 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-03T16:45:00,508 ^ 2022-12-03T16:45:00,513 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,514 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-03T16:45:00,514 ^~ 2022-12-03T16:45:00,516 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-03T16:45:00,516 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,517 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-03T16:45:00,517 ^ 2022-12-03T16:45:00,518 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,518 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-03T16:45:00,519 ^~ 2022-12-03T16:45:00,519 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,520 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-03T16:45:00,520 ^ 2022-12-03T16:45:00,521 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,521 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-03T16:45:00,522 ^ 2022-12-03T16:45:00,522 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,523 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-03T16:45:00,523 ^ 2022-12-03T16:45:00,524 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,524 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-03T16:45:00,525 ^ 2022-12-03T16:45:00,525 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,526 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-03T16:45:00,526 ^ 2022-12-03T16:45:00,527 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,527 if (inx < volume->end_seq) break; 2022-12-03T16:45:00,528 ^ 2022-12-03T16:45:00,528 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,529 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-03T16:45:00,529 ^~ 2022-12-03T16:45:00,530 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,530 if (ncbi->index_start == -1 || inx > end) { 2022-12-03T16:45:00,531 ^~ 2022-12-03T16:45:00,531 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,532 if (ncbi->index_start == -1 || inx > end) { 2022-12-03T16:45:00,532 ^ 2022-12-03T16:45:00,533 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,533 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-03T16:45:00,534 ^~ 2022-12-03T16:45:00,534 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,535 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-03T16:45:00,535 ^~ 2022-12-03T16:45:00,536 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,536 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-03T16:45:00,536 ^~ 2022-12-03T16:45:00,537 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-03T16:45:00,537 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,538 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,538 ^~ 2022-12-03T16:45:00,538 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,539 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-03T16:45:00,539 ^~ 2022-12-03T16:45:00,540 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,540 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-03T16:45:00,541 ^~ 2022-12-03T16:45:00,541 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-03T16:45:00,542 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,542 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,543 ^~ 2022-12-03T16:45:00,543 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,544 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-03T16:45:00,544 ^~ 2022-12-03T16:45:00,551 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,552 if (ncbi->seq_apos - sq->doff < size) { 2022-12-03T16:45:00,552 ^ 2022-12-03T16:45:00,556 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-03T16:45:00,557 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,558 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,558 ^~ 2022-12-03T16:45:00,562 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,562 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-03T16:45:00,563 ^~ 2022-12-03T16:45:00,573 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-03T16:45:00,574 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,574 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-03T16:45:00,575 ^~ 2022-12-03T16:45:00,581 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,582 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-03T16:45:00,582 ^~ 2022-12-03T16:45:00,595 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-03T16:45:00,596 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,596 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-03T16:45:00,597 ^ 2022-12-03T16:45:00,597 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,598 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-03T16:45:00,598 ^ 2022-12-03T16:45:00,599 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,599 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-03T16:45:00,599 ^~ 2022-12-03T16:45:00,601 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-03T16:45:00,602 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,603 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-03T16:45:00,603 ^ 2022-12-03T16:45:00,604 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,604 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-03T16:45:00,605 ^ 2022-12-03T16:45:00,605 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:00,606 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-03T16:45:00,606 ^~ 2022-12-03T16:45:00,612 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-03T16:45:00,613 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:00,614 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-03T16:45:00,614 ^~ 2022-12-03T16:45:01,983 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-03T16:45:01,984 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-03T16:45:02,402 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-03T16:45:02,403 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:02,404 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-03T16:45:02,404 ^~ 2022-12-03T16:45:03,142 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-03T16:45:03,144 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-03T16:45:03,346 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-03T16:45:03,348 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-03T16:45:03,663 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-03T16:45:03,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-03T16:45:03,863 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-03T16:45:03,864 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-03T16:45:05,492 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-03T16:45:05,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-03T16:45:06,027 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-03T16:45:06,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-03T16:45:06,347 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-03T16:45:06,348 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:06,349 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-03T16:45:06,349 ^ 2022-12-03T16:45:06,616 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-03T16:45:06,618 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-03T16:45:07,020 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-03T16:45:07,023 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-03T16:45:07,071 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-03T16:45:07,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-03T16:45:07,172 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-03T16:45:07,173 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-03T16:45:07,612 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-03T16:45:07,613 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-03T16:45:07,614 for (pos = 0; pos < sq->n; pos++) 2022-12-03T16:45:07,614 ^ 2022-12-03T16:45:07,615 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-03T16:45:07,615 for (pos = 1; pos <= sq->n; pos++) 2022-12-03T16:45:07,616 ^~ 2022-12-03T16:45:09,640 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-03T16:45:09,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-03T16:45:10,553 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-03T16:45:10,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-03T16:45:10,626 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-03T16:45:10,627 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:45:10,628 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-03T16:45:10,628 ~~~~^~~~~~~ 2022-12-03T16:45:10,855 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-03T16:45:10,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-03T16:45:10,934 In file included from vendor/easel/esl_hmm.c:9: 2022-12-03T16:45:10,935 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-03T16:45:10,937 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:10,937 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-03T16:45:10,938 ^ 2022-12-03T16:45:10,938 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-03T16:45:10,939 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-03T16:45:10,939 ^~~~~~~ 2022-12-03T16:45:10,940 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:45:10,941 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-03T16:45:10,941 ^~~ 2022-12-03T16:45:10,942 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-03T16:45:10,942 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-03T16:45:10,942 ^~~~~~~ 2022-12-03T16:45:11,312 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-03T16:45:11,312 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:45:11,313 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-03T16:45:11,313 ^~~~~~~~~~~~~~~~ 2022-12-03T16:45:12,843 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-03T16:45:12,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-03T16:45:12,923 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-03T16:45:12,924 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-03T16:45:13,205 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-03T16:45:13,207 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:13,208 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-03T16:45:13,209 ^~ 2022-12-03T16:45:13,750 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-03T16:45:13,751 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:45:13,751 if (opt_fx) *opt_fx = fx; 2022-12-03T16:45:13,752 ~~~~~~~~^~~~ 2022-12-03T16:45:13,752 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:45:13,752 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-03T16:45:13,753 ~~^~~ 2022-12-03T16:45:13,753 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-03T16:45:13,754 double ax,bx,cx; 2022-12-03T16:45:13,754 ^~ 2022-12-03T16:45:13,755 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-03T16:45:13,755 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-03T16:45:13,755 ~^~~~~~~~~~~~~ 2022-12-03T16:45:13,756 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-03T16:45:13,756 double ax,bx,cx; 2022-12-03T16:45:13,757 ^~ 2022-12-03T16:45:14,143 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-03T16:45:14,145 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-03T16:45:14,256 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-03T16:45:14,259 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-03T16:45:14,343 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-03T16:45:14,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-03T16:45:14,700 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-03T16:45:14,700 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:14,701 if (alphatype != dd->abc_r->type) 2022-12-03T16:45:14,701 ^~ 2022-12-03T16:45:14,721 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-03T16:45:14,722 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:45:14,723 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-03T16:45:14,723 ^ 2022-12-03T16:45:14,724 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:14,724 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-03T16:45:14,725 ^ 2022-12-03T16:45:14,725 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:14,726 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-03T16:45:14,726 ^ 2022-12-03T16:45:14,727 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:14,727 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-03T16:45:14,728 ^ 2022-12-03T16:45:14,731 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:14,731 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-03T16:45:14,732 ^~ 2022-12-03T16:45:14,733 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:14,733 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-03T16:45:14,734 ^~ 2022-12-03T16:45:14,734 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:14,735 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-03T16:45:14,735 ^~ 2022-12-03T16:45:14,736 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:14,736 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-03T16:45:14,737 ^~ 2022-12-03T16:45:14,807 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-03T16:45:14,808 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-03T16:45:14,808 } 2022-12-03T16:45:14,808 ^ 2022-12-03T16:45:14,822 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-03T16:45:14,823 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-03T16:45:14,823 } 2022-12-03T16:45:14,824 ^ 2022-12-03T16:45:15,080 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-03T16:45:15,081 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-03T16:45:15,137 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-03T16:45:15,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-03T16:45:15,355 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-03T16:45:15,357 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-03T16:45:15,995 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-03T16:45:15,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-03T16:45:16,689 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-03T16:45:16,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-03T16:45:16,820 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-03T16:45:16,821 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-03T16:45:17,514 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-03T16:45:17,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-03T16:45:18,154 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-03T16:45:18,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-03T16:45:19,056 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-03T16:45:19,059 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-03T16:45:19,093 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-03T16:45:19,095 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-03T16:45:19,183 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-03T16:45:19,184 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-03T16:45:19,474 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-03T16:45:19,475 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,475 for (h = 0; h < kh->hashsize; h++) 2022-12-03T16:45:19,476 ^ 2022-12-03T16:45:19,476 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-03T16:45:19,477 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,477 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-03T16:45:19,478 ^ 2022-12-03T16:45:19,478 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-03T16:45:19,479 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,479 for (h = 0; h < kh->hashsize; h++) 2022-12-03T16:45:19,480 ^ 2022-12-03T16:45:19,484 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-03T16:45:19,485 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,485 if (kh->nkeys > 3*kh->hashsize) 2022-12-03T16:45:19,486 ^ 2022-12-03T16:45:19,488 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-03T16:45:19,489 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,490 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-03T16:45:19,490 ^ 2022-12-03T16:45:19,494 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-03T16:45:19,495 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:19,496 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-03T16:45:19,496 ^ 2022-12-03T16:45:19,539 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-03T16:45:19,541 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-03T16:45:19,677 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-03T16:45:19,678 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-03T16:45:20,350 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-03T16:45:20,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-03T16:45:20,544 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-03T16:45:20,544 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-03T16:45:20,613 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-03T16:45:20,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-03T16:45:20,776 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-03T16:45:20,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-03T16:45:21,370 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-03T16:45:21,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-03T16:45:21,522 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-03T16:45:21,524 creating build/temp.linux-armv7l-cpython-37/build 2022-12-03T16:45:21,526 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-03T16:45:21,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-03T16:45:22,016 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-03T16:45:22,017 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:22,018 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-03T16:45:22,018 ^~ 2022-12-03T16:45:22,023 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-03T16:45:22,024 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-03T16:45:26,096 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-03T16:45:26,098 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-03T16:45:29,483 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-03T16:45:29,486 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-03T16:45:30,569 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-03T16:45:31,094 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-03T16:45:31,102 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-03T16:45:31,104 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-03T16:45:31,105 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-03T16:45:31,108 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-03T16:45:31,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-03T16:45:31,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-03T16:45:31,118 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-03T16:45:31,135 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-03T16:45:31,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-03T16:45:31,550 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-03T16:45:31,551 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:31,551 #error "No vector implementation enabled" 2022-12-03T16:45:31,552 ^~~~~ 2022-12-03T16:45:31,553 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,553 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:31,554 ^~~~~~ 2022-12-03T16:45:31,555 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,555 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:31,555 ^~~~~~ 2022-12-03T16:45:31,556 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,557 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:31,558 ^~~~~~ 2022-12-03T16:45:31,558 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,559 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:31,559 ^~~~~~ 2022-12-03T16:45:31,560 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,561 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:31,561 ^~~~~~~~~~~ 2022-12-03T16:45:31,562 P7_PROFILE 2022-12-03T16:45:31,573 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,574 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:31,574 ^~~~~~~~~~~ 2022-12-03T16:45:31,575 P7_PROFILE 2022-12-03T16:45:31,575 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,576 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:31,577 ^~~~~~~~~~~ 2022-12-03T16:45:31,578 P7_PROFILE 2022-12-03T16:45:31,578 In file included from vendor/hmmer/src/errors.c:19: 2022-12-03T16:45:31,579 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:31,579 #error "No vector implementation enabled" 2022-12-03T16:45:31,580 ^~~~~ 2022-12-03T16:45:31,581 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,582 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:31,582 ^~~~~~~~~~~ 2022-12-03T16:45:31,585 P7_PROFILE 2022-12-03T16:45:31,586 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,586 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:31,587 ^~~~~~ 2022-12-03T16:45:31,587 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,588 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:31,589 ^~~~~~ 2022-12-03T16:45:31,589 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,590 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:31,590 ^~~~~~ 2022-12-03T16:45:31,591 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,591 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:31,592 ^~~~~~ 2022-12-03T16:45:31,593 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,594 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:31,595 ^~~~~~~~~~~ 2022-12-03T16:45:31,596 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,597 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:31,597 ^~~~~~~~~~~ 2022-12-03T16:45:31,598 P7_PROFILE 2022-12-03T16:45:31,599 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,600 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:31,601 ^~~~~~~~~~~ 2022-12-03T16:45:31,601 P7_PROFILE 2022-12-03T16:45:31,602 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,602 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:31,603 ^~~~~~~~~~~ 2022-12-03T16:45:31,604 P7_PROFILE 2022-12-03T16:45:31,604 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,605 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:31,605 ^~~~~~~~~~~ 2022-12-03T16:45:31,606 P7_PROFILE 2022-12-03T16:45:31,607 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,608 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:31,608 ^~~~~~~~~~~ 2022-12-03T16:45:31,609 P7_PROFILE 2022-12-03T16:45:31,610 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,611 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:31,611 ^~~~~~~~~~~ 2022-12-03T16:45:31,612 P7_PROFILE 2022-12-03T16:45:31,612 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,613 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,614 ^~~~~~~~~~~ 2022-12-03T16:45:31,615 P7_PROFILE 2022-12-03T16:45:31,616 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,616 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:31,617 ^~~~~~~~~~~ 2022-12-03T16:45:31,618 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,618 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,619 ^~~~~~ 2022-12-03T16:45:31,620 P7_GMX 2022-12-03T16:45:31,621 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,621 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,622 ^~~~~~ 2022-12-03T16:45:31,622 P7_GMX 2022-12-03T16:45:31,623 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,625 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:31,625 ^~~~~~~~~~~ 2022-12-03T16:45:31,626 P7_PROFILE 2022-12-03T16:45:31,627 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,627 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,628 ^~~~~~ 2022-12-03T16:45:31,629 P7_GMX 2022-12-03T16:45:31,630 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,630 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:31,631 ^~~~~~~~~~~ 2022-12-03T16:45:31,631 P7_PROFILE 2022-12-03T16:45:31,632 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,634 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,634 ^~~~~~ 2022-12-03T16:45:31,635 P7_GMX 2022-12-03T16:45:31,636 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,636 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,636 ^~~~~~~~~~~ 2022-12-03T16:45:31,637 P7_PROFILE 2022-12-03T16:45:31,638 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-03T16:45:31,639 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:31,639 #error "No vector implementation enabled" 2022-12-03T16:45:31,640 ^~~~~ 2022-12-03T16:45:31,640 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,641 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,642 ^~~~~~ 2022-12-03T16:45:31,643 P7_GMX 2022-12-03T16:45:31,644 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,644 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:31,645 ^~~~~~~~~~~ 2022-12-03T16:45:31,645 P7_PROFILE 2022-12-03T16:45:31,646 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,647 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:31,647 ^~~~~~ 2022-12-03T16:45:31,648 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,648 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:31,649 ^~~~~~ 2022-12-03T16:45:31,649 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,650 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:31,651 ^~~~~~ 2022-12-03T16:45:31,651 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,652 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:31,652 ^~~~~~ 2022-12-03T16:45:31,653 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,653 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,654 ^~~~~~ 2022-12-03T16:45:31,655 P7_GMX 2022-12-03T16:45:31,656 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,657 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:31,658 ^~~~~~~~~~~ 2022-12-03T16:45:31,659 P7_PROFILE 2022-12-03T16:45:31,659 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,660 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,661 ^~~~~~ 2022-12-03T16:45:31,661 P7_GMX 2022-12-03T16:45:31,662 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,664 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:31,664 ^~~~~~~~~~~ 2022-12-03T16:45:31,665 P7_PROFILE 2022-12-03T16:45:31,666 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,666 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:31,667 ^~~~~~~~~~~ 2022-12-03T16:45:31,668 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,668 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:31,669 ^~~~~~~~~~~ 2022-12-03T16:45:31,669 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,670 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,670 ^~~~~~ 2022-12-03T16:45:31,670 P7_GMX 2022-12-03T16:45:31,684 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,684 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:31,685 ^~~~~~~~~~~ 2022-12-03T16:45:31,686 P7_PROFILE 2022-12-03T16:45:31,687 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,687 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:31,688 ^~~~~~~~~~~ 2022-12-03T16:45:31,688 P7_PROFILE 2022-12-03T16:45:31,689 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,690 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:31,690 ^~~~~~~~~~~ 2022-12-03T16:45:31,691 P7_PROFILE 2022-12-03T16:45:31,691 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,692 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:31,695 ^~~~~~~~~~~ 2022-12-03T16:45:31,696 P7_PROFILE 2022-12-03T16:45:31,697 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,697 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:31,698 ^~~~~~~~~~~ 2022-12-03T16:45:31,699 P7_PROFILE 2022-12-03T16:45:31,699 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,700 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:31,700 ^~~~~~~~~~~ 2022-12-03T16:45:31,701 P7_PROFILE 2022-12-03T16:45:31,702 In file included from vendor/hmmer/src/build.c:32: 2022-12-03T16:45:31,702 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:31,702 #error "No vector implementation enabled" 2022-12-03T16:45:31,703 ^~~~~ 2022-12-03T16:45:31,704 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,704 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:31,705 ^~~~~~~~~~~ 2022-12-03T16:45:31,705 P7_PROFILE 2022-12-03T16:45:31,706 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,706 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:31,707 ^~~~~~~~~~~ 2022-12-03T16:45:31,708 P7_PROFILE 2022-12-03T16:45:31,708 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,709 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:31,709 ^~~~~~~~~~~ 2022-12-03T16:45:31,710 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,711 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:31,712 ^~~~~~~~~~~ 2022-12-03T16:45:31,713 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,713 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:31,714 ^~~~~~ 2022-12-03T16:45:31,715 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,715 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:31,716 ^~~~~~ 2022-12-03T16:45:31,717 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,718 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:31,718 ^~~~~~ 2022-12-03T16:45:31,719 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:31,720 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:31,720 ^~~~~~ 2022-12-03T16:45:31,721 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,722 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:31,722 ^~~~~~~~~~~ 2022-12-03T16:45:31,723 P7_PROFILE 2022-12-03T16:45:31,723 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,724 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:31,725 ^~~~~~~~~~~ 2022-12-03T16:45:31,726 P7_PROFILE 2022-12-03T16:45:31,727 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,728 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:31,728 ^~~~~~~~~~~ 2022-12-03T16:45:31,729 P7_PROFILE 2022-12-03T16:45:31,730 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,730 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:31,731 ^~~~~~~~~~~ 2022-12-03T16:45:31,731 P7_PROFILE 2022-12-03T16:45:31,732 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,732 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:31,733 ^~~~~~~~~~~ 2022-12-03T16:45:31,733 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,734 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:31,734 ^~~~~~~~~~~ 2022-12-03T16:45:31,735 P7_PROFILE 2022-12-03T16:45:31,736 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,736 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:31,737 ^~~~~~~~~~~ 2022-12-03T16:45:31,737 P7_PROFILE 2022-12-03T16:45:31,738 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,738 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:31,739 ^~~~~~~~~~~ 2022-12-03T16:45:31,740 P7_PROFILE 2022-12-03T16:45:31,740 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,741 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:31,741 ^~~~~~~~~~~ 2022-12-03T16:45:31,742 P7_PROFILE 2022-12-03T16:45:31,742 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,743 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:31,744 ^~~~~~~~~~~ 2022-12-03T16:45:31,744 P7_PROFILE 2022-12-03T16:45:31,745 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-03T16:45:31,745 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,746 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:31,747 ^~~~~~~~~~~ 2022-12-03T16:45:31,747 P7_PROFILE 2022-12-03T16:45:31,748 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-03T16:45:31,748 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,749 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:31,749 ^~~~~~~~~~~ 2022-12-03T16:45:31,750 P7_PROFILE 2022-12-03T16:45:31,750 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,751 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:31,751 ^~~~~~~~~~~ 2022-12-03T16:45:31,752 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,752 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,753 ^~~~~~~~~~~ 2022-12-03T16:45:31,753 P7_PROFILE 2022-12-03T16:45:31,754 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,754 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,755 ^~~~~~ 2022-12-03T16:45:31,755 P7_GMX 2022-12-03T16:45:31,756 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,756 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:31,757 ^~~~~~~~~~~ 2022-12-03T16:45:31,757 P7_PROFILE 2022-12-03T16:45:31,758 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,758 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,759 ^~~~~~ 2022-12-03T16:45:31,759 P7_GMX 2022-12-03T16:45:31,760 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,760 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:31,761 ^~~~~~~~~~~ 2022-12-03T16:45:31,761 P7_PROFILE 2022-12-03T16:45:31,762 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,762 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,763 ^~~~~~ 2022-12-03T16:45:31,763 P7_GMX 2022-12-03T16:45:31,764 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,764 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,765 ^~~~~~~~~~~ 2022-12-03T16:45:31,765 P7_PROFILE 2022-12-03T16:45:31,766 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,766 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,767 ^~~~~~ 2022-12-03T16:45:31,767 P7_GMX 2022-12-03T16:45:31,768 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,768 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,769 ^~~~~~ 2022-12-03T16:45:31,769 P7_GMX 2022-12-03T16:45:31,770 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,770 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,771 ^~~~~~ 2022-12-03T16:45:31,771 P7_GMX 2022-12-03T16:45:31,772 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,772 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,773 ^~~~~~ 2022-12-03T16:45:31,774 P7_GMX 2022-12-03T16:45:31,774 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-03T16:45:31,775 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:31,775 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:31,776 ^~~~~~ 2022-12-03T16:45:31,777 P7_GMX 2022-12-03T16:45:31,777 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-03T16:45:31,778 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,778 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:31,779 ^~~~~~~~~~~ 2022-12-03T16:45:31,779 P7_PROFILE 2022-12-03T16:45:31,780 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,781 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:31,782 ^~~~~~~~~~~ 2022-12-03T16:45:31,783 P7_PROFILE 2022-12-03T16:45:31,783 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,784 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:31,784 ^~~~~~~~~~~ 2022-12-03T16:45:31,785 P7_PROFILE 2022-12-03T16:45:31,785 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,786 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:31,786 ^~~~~~~~~~~ 2022-12-03T16:45:31,787 P7_PROFILE 2022-12-03T16:45:31,788 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,788 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:31,788 ^~~~~~~~~~~ 2022-12-03T16:45:31,789 P7_PROFILE 2022-12-03T16:45:31,789 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,789 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:31,790 ^~~~~~~~~~~ 2022-12-03T16:45:31,790 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,791 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:31,791 ^~~~~~~~~~~ 2022-12-03T16:45:31,792 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,792 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:31,793 ^~~~~~~~~~~ 2022-12-03T16:45:31,793 P7_PROFILE 2022-12-03T16:45:31,794 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,794 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:31,795 ^~~~~~~~~~~ 2022-12-03T16:45:31,795 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:31,796 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:31,796 ^~~~~~~~~~~ 2022-12-03T16:45:31,796 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,797 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:31,797 ^~~~~~~~~~~ 2022-12-03T16:45:31,798 P7_PROFILE 2022-12-03T16:45:31,798 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,798 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:31,799 ^~~~~~~~~~~ 2022-12-03T16:45:31,799 P7_PROFILE 2022-12-03T16:45:31,799 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,800 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:31,800 ^~~~~~~~~~~ 2022-12-03T16:45:31,801 P7_PROFILE 2022-12-03T16:45:31,801 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,801 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:31,802 ^~~~~~~~~~~ 2022-12-03T16:45:31,802 P7_PROFILE 2022-12-03T16:45:31,802 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,803 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:31,803 ^~~~~~~~~~~ 2022-12-03T16:45:31,804 P7_PROFILE 2022-12-03T16:45:31,804 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:31,805 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:31,805 ^~~~~~~~~~~ 2022-12-03T16:45:31,806 P7_PROFILE 2022-12-03T16:45:31,826 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-03T16:45:31,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-03T16:45:31,846 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-03T16:45:31,848 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-03T16:45:31,946 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-03T16:45:31,948 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-03T16:45:32,028 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-03T16:45:32,030 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-03T16:45:32,147 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-03T16:45:32,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-03T16:45:32,207 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-03T16:45:32,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-03T16:45:32,222 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-03T16:45:32,223 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:32,224 #error "No vector implementation enabled" 2022-12-03T16:45:32,224 ^~~~~ 2022-12-03T16:45:32,225 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,225 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:32,226 ^~~~~~ 2022-12-03T16:45:32,226 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,227 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:32,227 ^~~~~~ 2022-12-03T16:45:32,228 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,228 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:32,229 ^~~~~~ 2022-12-03T16:45:32,230 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,230 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:32,231 ^~~~~~ 2022-12-03T16:45:32,233 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,234 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:32,235 ^~~~~~~~~~~ 2022-12-03T16:45:32,235 P7_PROFILE 2022-12-03T16:45:32,241 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,241 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:32,242 ^~~~~~~~~~~ 2022-12-03T16:45:32,242 P7_PROFILE 2022-12-03T16:45:32,243 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,243 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:32,243 ^~~~~~~~~~~ 2022-12-03T16:45:32,244 P7_PROFILE 2022-12-03T16:45:32,244 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,244 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:32,245 ^~~~~~~~~~~ 2022-12-03T16:45:32,245 P7_PROFILE 2022-12-03T16:45:32,248 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,248 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:32,249 ^~~~~~~~~~~ 2022-12-03T16:45:32,254 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,255 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:32,255 ^~~~~~~~~~~ 2022-12-03T16:45:32,256 P7_PROFILE 2022-12-03T16:45:32,259 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,260 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:32,260 ^~~~~~~~~~~ 2022-12-03T16:45:32,261 P7_PROFILE 2022-12-03T16:45:32,262 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,263 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,263 ^~~~~~~~~~~ 2022-12-03T16:45:32,264 P7_PROFILE 2022-12-03T16:45:32,266 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,267 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,267 ^~~~~~ 2022-12-03T16:45:32,268 P7_GMX 2022-12-03T16:45:32,270 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,274 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,275 ^~~~~~ 2022-12-03T16:45:32,276 P7_GMX 2022-12-03T16:45:32,276 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,277 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,277 ^~~~~~ 2022-12-03T16:45:32,278 P7_GMX 2022-12-03T16:45:32,278 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,278 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,279 ^~~~~~ 2022-12-03T16:45:32,279 P7_GMX 2022-12-03T16:45:32,292 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,292 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:32,293 ^~~~~~~~~~~ 2022-12-03T16:45:32,294 P7_PROFILE 2022-12-03T16:45:32,294 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,295 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:32,296 ^~~~~~~~~~~ 2022-12-03T16:45:32,296 P7_PROFILE 2022-12-03T16:45:32,297 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,297 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:32,298 ^~~~~~~~~~~ 2022-12-03T16:45:32,298 P7_PROFILE 2022-12-03T16:45:32,299 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,299 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:32,299 ^~~~~~~~~~~ 2022-12-03T16:45:32,300 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,300 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:32,301 ^~~~~~~~~~~ 2022-12-03T16:45:32,301 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,302 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:32,302 ^~~~~~~~~~~ 2022-12-03T16:45:32,303 P7_PROFILE 2022-12-03T16:45:32,303 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,304 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:32,304 ^~~~~~~~~~~ 2022-12-03T16:45:32,305 P7_PROFILE 2022-12-03T16:45:32,315 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,315 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:32,316 ^~~~~~~~~~~ 2022-12-03T16:45:32,316 P7_PROFILE 2022-12-03T16:45:32,366 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-03T16:45:32,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-03T16:45:32,411 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-03T16:45:32,412 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:32,412 #error "No vector implementation enabled" 2022-12-03T16:45:32,413 ^~~~~ 2022-12-03T16:45:32,416 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,417 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:32,417 ^~~~~~ 2022-12-03T16:45:32,418 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,419 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:32,419 ^~~~~~ 2022-12-03T16:45:32,420 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,421 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:32,421 ^~~~~~ 2022-12-03T16:45:32,422 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,423 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:32,424 ^~~~~~ 2022-12-03T16:45:32,430 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,431 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:32,431 ^~~~~~~~~~~ 2022-12-03T16:45:32,432 P7_PROFILE 2022-12-03T16:45:32,436 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,436 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:32,437 ^~~~~~~~~~~ 2022-12-03T16:45:32,437 P7_PROFILE 2022-12-03T16:45:32,441 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,442 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:32,442 ^~~~~~~~~~~ 2022-12-03T16:45:32,443 P7_PROFILE 2022-12-03T16:45:32,446 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,447 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:32,447 ^~~~~~~~~~~ 2022-12-03T16:45:32,448 P7_PROFILE 2022-12-03T16:45:32,450 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,450 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:32,451 ^~~~~~~~~~~ 2022-12-03T16:45:32,454 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,455 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:32,456 ^~~~~~~~~~~ 2022-12-03T16:45:32,457 P7_PROFILE 2022-12-03T16:45:32,458 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,458 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:32,459 ^~~~~~~~~~~ 2022-12-03T16:45:32,460 P7_PROFILE 2022-12-03T16:45:32,463 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,464 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,464 ^~~~~~~~~~~ 2022-12-03T16:45:32,465 P7_PROFILE 2022-12-03T16:45:32,466 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,466 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,467 ^~~~~~ 2022-12-03T16:45:32,467 P7_GMX 2022-12-03T16:45:32,469 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,470 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,471 ^~~~~~ 2022-12-03T16:45:32,471 P7_GMX 2022-12-03T16:45:32,472 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,473 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,483 ^~~~~~ 2022-12-03T16:45:32,484 P7_GMX 2022-12-03T16:45:32,484 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,485 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,486 ^~~~~~ 2022-12-03T16:45:32,486 P7_GMX 2022-12-03T16:45:32,487 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,487 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:32,488 ^~~~~~~~~~~ 2022-12-03T16:45:32,488 P7_PROFILE 2022-12-03T16:45:32,489 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,490 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:32,490 ^~~~~~~~~~~ 2022-12-03T16:45:32,491 P7_PROFILE 2022-12-03T16:45:32,491 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,492 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:32,503 ^~~~~~~~~~~ 2022-12-03T16:45:32,503 P7_PROFILE 2022-12-03T16:45:32,504 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,504 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:32,505 ^~~~~~~~~~~ 2022-12-03T16:45:32,505 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,506 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:32,506 ^~~~~~~~~~~ 2022-12-03T16:45:32,507 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,508 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:32,508 ^~~~~~~~~~~ 2022-12-03T16:45:32,508 P7_PROFILE 2022-12-03T16:45:32,509 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,509 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:32,510 ^~~~~~~~~~~ 2022-12-03T16:45:32,510 P7_PROFILE 2022-12-03T16:45:32,511 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,511 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:32,512 ^~~~~~~~~~~ 2022-12-03T16:45:32,512 P7_PROFILE 2022-12-03T16:45:32,553 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-03T16:45:32,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-03T16:45:32,647 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-03T16:45:32,648 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:32,648 #error "No vector implementation enabled" 2022-12-03T16:45:32,649 ^~~~~ 2022-12-03T16:45:32,650 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,651 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:32,651 ^~~~~~ 2022-12-03T16:45:32,652 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,652 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:32,652 ^~~~~~ 2022-12-03T16:45:32,653 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,654 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:32,654 ^~~~~~ 2022-12-03T16:45:32,655 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,655 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:32,656 ^~~~~~ 2022-12-03T16:45:32,657 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,657 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:32,658 ^~~~~~~~~~~ 2022-12-03T16:45:32,658 P7_PROFILE 2022-12-03T16:45:32,659 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,660 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:32,660 ^~~~~~~~~~~ 2022-12-03T16:45:32,661 P7_PROFILE 2022-12-03T16:45:32,662 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,664 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:32,664 ^~~~~~~~~~~ 2022-12-03T16:45:32,665 P7_PROFILE 2022-12-03T16:45:32,666 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,666 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:32,667 ^~~~~~~~~~~ 2022-12-03T16:45:32,667 P7_PROFILE 2022-12-03T16:45:32,669 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,670 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:32,670 ^~~~~~~~~~~ 2022-12-03T16:45:32,674 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,675 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:32,676 ^~~~~~~~~~~ 2022-12-03T16:45:32,676 P7_PROFILE 2022-12-03T16:45:32,678 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,678 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:32,679 ^~~~~~~~~~~ 2022-12-03T16:45:32,680 P7_PROFILE 2022-12-03T16:45:32,682 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,683 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,684 ^~~~~~~~~~~ 2022-12-03T16:45:32,684 P7_PROFILE 2022-12-03T16:45:32,685 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-03T16:45:32,685 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:32,686 #error "No vector implementation enabled" 2022-12-03T16:45:32,687 ^~~~~ 2022-12-03T16:45:32,687 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,688 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,688 ^~~~~~ 2022-12-03T16:45:32,689 P7_GMX 2022-12-03T16:45:32,690 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,690 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:32,691 ^~~~~~ 2022-12-03T16:45:32,692 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,693 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:32,693 ^~~~~~ 2022-12-03T16:45:32,694 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,694 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:32,695 ^~~~~~ 2022-12-03T16:45:32,695 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,696 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:32,696 ^~~~~~ 2022-12-03T16:45:32,697 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,697 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,697 ^~~~~~ 2022-12-03T16:45:32,698 P7_GMX 2022-12-03T16:45:32,698 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,699 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,700 ^~~~~~ 2022-12-03T16:45:32,700 P7_GMX 2022-12-03T16:45:32,701 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,701 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,702 ^~~~~~ 2022-12-03T16:45:32,702 P7_GMX 2022-12-03T16:45:32,703 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,704 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:32,705 ^~~~~~~~~~~ 2022-12-03T16:45:32,705 P7_PROFILE 2022-12-03T16:45:32,706 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,707 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:32,708 ^~~~~~~~~~~ 2022-12-03T16:45:32,708 P7_PROFILE 2022-12-03T16:45:32,709 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,710 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:32,711 ^~~~~~~~~~~ 2022-12-03T16:45:32,711 P7_PROFILE 2022-12-03T16:45:32,712 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,713 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:32,713 ^~~~~~~~~~~ 2022-12-03T16:45:32,714 P7_PROFILE 2022-12-03T16:45:32,714 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,715 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:32,715 ^~~~~~~~~~~ 2022-12-03T16:45:32,716 P7_PROFILE 2022-12-03T16:45:32,717 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,717 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:32,718 ^~~~~~~~~~~ 2022-12-03T16:45:32,718 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,719 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:32,719 ^~~~~~~~~~~ 2022-12-03T16:45:32,720 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,720 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:32,721 ^~~~~~~~~~~ 2022-12-03T16:45:32,721 P7_PROFILE 2022-12-03T16:45:32,721 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,722 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:32,722 ^~~~~~~~~~~ 2022-12-03T16:45:32,722 P7_PROFILE 2022-12-03T16:45:32,723 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,723 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:32,724 ^~~~~~~~~~~ 2022-12-03T16:45:32,724 P7_PROFILE 2022-12-03T16:45:32,728 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,729 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:32,730 ^~~~~~~~~~~ 2022-12-03T16:45:32,730 P7_PROFILE 2022-12-03T16:45:32,731 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,732 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:32,732 ^~~~~~~~~~~ 2022-12-03T16:45:32,733 P7_PROFILE 2022-12-03T16:45:32,735 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,736 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:32,736 ^~~~~~~~~~~ 2022-12-03T16:45:32,742 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,743 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:32,743 ^~~~~~~~~~~ 2022-12-03T16:45:32,744 P7_PROFILE 2022-12-03T16:45:32,754 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,755 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:32,756 ^~~~~~~~~~~ 2022-12-03T16:45:32,756 P7_PROFILE 2022-12-03T16:45:32,759 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,759 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,760 ^~~~~~~~~~~ 2022-12-03T16:45:32,761 P7_PROFILE 2022-12-03T16:45:32,761 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-03T16:45:32,762 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,763 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,764 ^~~~~~ 2022-12-03T16:45:32,764 P7_GMX 2022-12-03T16:45:32,765 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-03T16:45:32,766 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,767 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,767 ^~~~~~ 2022-12-03T16:45:32,768 P7_GMX 2022-12-03T16:45:32,773 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,774 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,774 ^~~~~~ 2022-12-03T16:45:32,775 P7_GMX 2022-12-03T16:45:32,775 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,776 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,777 ^~~~~~ 2022-12-03T16:45:32,778 P7_GMX 2022-12-03T16:45:32,780 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,781 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:32,782 ^~~~~~~~~~~ 2022-12-03T16:45:32,782 P7_PROFILE 2022-12-03T16:45:32,784 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,785 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:32,786 ^~~~~~~~~~~ 2022-12-03T16:45:32,786 P7_PROFILE 2022-12-03T16:45:32,794 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,795 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:32,795 ^~~~~~~~~~~ 2022-12-03T16:45:32,796 P7_PROFILE 2022-12-03T16:45:32,797 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,797 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:32,797 ^~~~~~~~~~~ 2022-12-03T16:45:32,798 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,798 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:32,799 ^~~~~~~~~~~ 2022-12-03T16:45:32,799 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,800 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:32,800 ^~~~~~~~~~~ 2022-12-03T16:45:32,801 P7_PROFILE 2022-12-03T16:45:32,801 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,802 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:32,802 ^~~~~~~~~~~ 2022-12-03T16:45:32,804 P7_PROFILE 2022-12-03T16:45:32,809 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,809 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:32,810 ^~~~~~~~~~~ 2022-12-03T16:45:32,810 P7_PROFILE 2022-12-03T16:45:32,835 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-03T16:45:32,837 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-03T16:45:32,866 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-03T16:45:32,867 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:32,867 #error "No vector implementation enabled" 2022-12-03T16:45:32,868 ^~~~~ 2022-12-03T16:45:32,870 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,871 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:32,872 ^~~~~~ 2022-12-03T16:45:32,872 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,873 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:32,874 ^~~~~~ 2022-12-03T16:45:32,874 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,875 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:32,876 ^~~~~~ 2022-12-03T16:45:32,877 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:32,877 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:32,878 ^~~~~~ 2022-12-03T16:45:32,879 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,880 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:32,880 ^~~~~~~~~~~ 2022-12-03T16:45:32,881 P7_PROFILE 2022-12-03T16:45:32,882 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,883 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:32,883 ^~~~~~~~~~~ 2022-12-03T16:45:32,884 P7_PROFILE 2022-12-03T16:45:32,886 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,887 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:32,887 ^~~~~~~~~~~ 2022-12-03T16:45:32,888 P7_PROFILE 2022-12-03T16:45:32,889 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,890 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:32,890 ^~~~~~~~~~~ 2022-12-03T16:45:32,891 P7_PROFILE 2022-12-03T16:45:32,894 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,894 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:32,895 ^~~~~~~~~~~ 2022-12-03T16:45:32,903 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,904 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:32,905 ^~~~~~~~~~~ 2022-12-03T16:45:32,905 P7_PROFILE 2022-12-03T16:45:32,906 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,906 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:32,907 ^~~~~~~~~~~ 2022-12-03T16:45:32,908 P7_PROFILE 2022-12-03T16:45:32,908 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,909 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,909 ^~~~~~~~~~~ 2022-12-03T16:45:32,910 P7_PROFILE 2022-12-03T16:45:32,911 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,911 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,912 ^~~~~~ 2022-12-03T16:45:32,912 P7_GMX 2022-12-03T16:45:32,918 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,918 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,919 ^~~~~~ 2022-12-03T16:45:32,919 P7_GMX 2022-12-03T16:45:32,920 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,920 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,920 ^~~~~~ 2022-12-03T16:45:32,921 P7_GMX 2022-12-03T16:45:32,921 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,922 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:32,922 ^~~~~~ 2022-12-03T16:45:32,943 P7_GMX 2022-12-03T16:45:32,944 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,944 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:32,945 ^~~~~~~~~~~ 2022-12-03T16:45:32,945 P7_PROFILE 2022-12-03T16:45:32,945 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,946 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:32,947 ^~~~~~~~~~~ 2022-12-03T16:45:32,947 P7_PROFILE 2022-12-03T16:45:32,948 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,948 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:32,949 ^~~~~~~~~~~ 2022-12-03T16:45:32,949 P7_PROFILE 2022-12-03T16:45:32,950 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,950 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:32,951 ^~~~~~~~~~~ 2022-12-03T16:45:32,951 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:32,952 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:32,952 ^~~~~~~~~~~ 2022-12-03T16:45:32,952 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,953 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:32,954 ^~~~~~~~~~~ 2022-12-03T16:45:32,954 P7_PROFILE 2022-12-03T16:45:32,954 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,955 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:32,955 ^~~~~~~~~~~ 2022-12-03T16:45:32,956 P7_PROFILE 2022-12-03T16:45:32,956 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,957 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:32,957 ^~~~~~~~~~~ 2022-12-03T16:45:32,958 P7_PROFILE 2022-12-03T16:45:32,965 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-03T16:45:32,966 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,967 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-03T16:45:32,967 ^~~~~~ 2022-12-03T16:45:32,968 P7_GMX 2022-12-03T16:45:32,983 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:32,984 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-03T16:45:32,984 ^~~~~~ 2022-12-03T16:45:32,985 P7_GMX 2022-12-03T16:45:32,985 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:32,986 P7_OPROFILE *om = NULL; 2022-12-03T16:45:32,986 ^~~~~~~~~~~ 2022-12-03T16:45:32,987 P7_PROFILE 2022-12-03T16:45:32,988 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-03T16:45:32,988 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-03T16:45:32,989 ^~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:32,989 p7_profile_Create 2022-12-03T16:45:32,990 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-03T16:45:32,990 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-03T16:45:32,991 ^ 2022-12-03T16:45:32,991 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-03T16:45:32,992 p7_oprofile_Convert(gm, om); 2022-12-03T16:45:32,992 ^~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:32,993 p7_profile_Compare 2022-12-03T16:45:32,998 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,004 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-03T16:45:33,005 ^~~~~~~~~~~~~ 2022-12-03T16:45:33,006 p7_gmx_Create 2022-12-03T16:45:33,006 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-03T16:45:33,007 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-03T16:45:33,007 ^ 2022-12-03T16:45:33,008 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-03T16:45:33,008 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-03T16:45:33,009 ^ 2022-12-03T16:45:33,010 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,010 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-03T16:45:33,011 ^~~~~~~~~~~~~ 2022-12-03T16:45:33,011 p7_gmx_GrowTo 2022-12-03T16:45:33,012 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,013 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-03T16:45:33,022 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,029 p7_ReconfigLength 2022-12-03T16:45:33,029 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,030 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-03T16:45:33,030 ^~~~~~~~~~ 2022-12-03T16:45:33,031 p7_GForward 2022-12-03T16:45:33,032 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,032 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-03T16:45:33,033 ^~~~~~~~~~~ 2022-12-03T16:45:33,038 p7_GBackward 2022-12-03T16:45:33,039 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,039 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-03T16:45:33,040 ^~~~~~~~~~~ 2022-12-03T16:45:33,040 p7_GDecoding 2022-12-03T16:45:33,041 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,041 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-03T16:45:33,042 ^~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,042 p7_GOptimalAccuracy 2022-12-03T16:45:33,045 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,045 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-03T16:45:33,046 ^~~~~~~~~~ 2022-12-03T16:45:33,046 p7_GOATrace 2022-12-03T16:45:33,047 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,047 p7_omx_Reuse(oxf); 2022-12-03T16:45:33,048 ^~~~~~~~~~~~ 2022-12-03T16:45:33,049 p7_gmx_Reuse 2022-12-03T16:45:33,049 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,050 p7_omx_Destroy(oxf); 2022-12-03T16:45:33,050 ^~~~~~~~~~~~~~ 2022-12-03T16:45:33,051 p7_gmx_Destroy 2022-12-03T16:45:33,051 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,052 p7_oprofile_Destroy(om); 2022-12-03T16:45:33,052 ^~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,054 p7_profile_Destroy 2022-12-03T16:45:33,091 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-03T16:45:33,091 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,092 #error "No vector implementation enabled" 2022-12-03T16:45:33,092 ^~~~~ 2022-12-03T16:45:33,094 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,094 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,095 ^~~~~~ 2022-12-03T16:45:33,095 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,096 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,096 ^~~~~~ 2022-12-03T16:45:33,097 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,098 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,098 ^~~~~~ 2022-12-03T16:45:33,099 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,100 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,100 ^~~~~~ 2022-12-03T16:45:33,101 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,102 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,102 ^~~~~~~~~~~ 2022-12-03T16:45:33,104 P7_PROFILE 2022-12-03T16:45:33,106 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,107 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,107 ^~~~~~~~~~~ 2022-12-03T16:45:33,108 P7_PROFILE 2022-12-03T16:45:33,108 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,109 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,110 ^~~~~~~~~~~ 2022-12-03T16:45:33,111 P7_PROFILE 2022-12-03T16:45:33,123 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,124 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,124 ^~~~~~~~~~~ 2022-12-03T16:45:33,125 P7_PROFILE 2022-12-03T16:45:33,126 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,126 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,127 ^~~~~~~~~~~ 2022-12-03T16:45:33,127 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,128 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,128 ^~~~~~~~~~~ 2022-12-03T16:45:33,129 P7_PROFILE 2022-12-03T16:45:33,130 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,131 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,132 ^~~~~~~~~~~ 2022-12-03T16:45:33,143 P7_PROFILE 2022-12-03T16:45:33,144 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,144 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,145 ^~~~~~~~~~~ 2022-12-03T16:45:33,145 P7_PROFILE 2022-12-03T16:45:33,145 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,146 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,147 ^~~~~~ 2022-12-03T16:45:33,147 P7_GMX 2022-12-03T16:45:33,148 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,149 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,149 ^~~~~~ 2022-12-03T16:45:33,150 P7_GMX 2022-12-03T16:45:33,150 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,151 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,151 ^~~~~~ 2022-12-03T16:45:33,152 P7_GMX 2022-12-03T16:45:33,152 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,154 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,171 ^~~~~~ 2022-12-03T16:45:33,171 P7_GMX 2022-12-03T16:45:33,172 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,172 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,173 ^~~~~~~~~~~ 2022-12-03T16:45:33,173 P7_PROFILE 2022-12-03T16:45:33,174 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,174 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,175 ^~~~~~~~~~~ 2022-12-03T16:45:33,175 P7_PROFILE 2022-12-03T16:45:33,176 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,176 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,176 ^~~~~~~~~~~ 2022-12-03T16:45:33,177 P7_PROFILE 2022-12-03T16:45:33,177 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,178 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,178 ^~~~~~~~~~~ 2022-12-03T16:45:33,179 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,179 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,180 ^~~~~~~~~~~ 2022-12-03T16:45:33,180 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,181 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,181 ^~~~~~~~~~~ 2022-12-03T16:45:33,182 P7_PROFILE 2022-12-03T16:45:33,182 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,182 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,184 ^~~~~~~~~~~ 2022-12-03T16:45:33,185 P7_PROFILE 2022-12-03T16:45:33,185 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,186 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:33,186 ^~~~~~~~~~~ 2022-12-03T16:45:33,187 P7_PROFILE 2022-12-03T16:45:33,187 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-03T16:45:33,188 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,188 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-03T16:45:33,189 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,189 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,190 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-03T16:45:33,190 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,191 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,191 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-03T16:45:33,191 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,192 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,203 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-03T16:45:33,204 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,205 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,205 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-03T16:45:33,206 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,206 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,206 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-03T16:45:33,207 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,207 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:33,208 if (ser_size != ptr - (*buf + *n)){ 2022-12-03T16:45:33,209 ^~ 2022-12-03T16:45:33,209 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-03T16:45:33,209 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,210 ret_obj->envsc = *((float *) &host_32bit); 2022-12-03T16:45:33,210 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,211 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,211 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-03T16:45:33,212 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,212 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,212 ret_obj->dombias = *((float *) &host_32bit); 2022-12-03T16:45:33,213 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,214 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,214 ret_obj->oasc = *((float *) &host_32bit); 2022-12-03T16:45:33,214 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,215 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,215 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-03T16:45:33,216 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,216 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,217 ret_obj->lnP = *((double *) &host_64bit); 2022-12-03T16:45:33,218 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,218 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-03T16:45:33,219 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-03T16:45:33,219 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,220 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:33,220 if(ptr - (buf + *n) != obj_size){ 2022-12-03T16:45:33,221 ^~ 2022-12-03T16:45:33,221 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-03T16:45:33,222 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-03T16:45:33,233 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-03T16:45:33,235 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-03T16:45:33,336 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-03T16:45:33,337 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,338 #error "No vector implementation enabled" 2022-12-03T16:45:33,338 ^~~~~ 2022-12-03T16:45:33,339 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,339 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,340 ^~~~~~ 2022-12-03T16:45:33,340 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,341 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,341 ^~~~~~ 2022-12-03T16:45:33,342 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,343 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,343 ^~~~~~ 2022-12-03T16:45:33,344 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,344 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,345 ^~~~~~ 2022-12-03T16:45:33,346 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,346 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,347 ^~~~~~~~~~~ 2022-12-03T16:45:33,347 P7_PROFILE 2022-12-03T16:45:33,348 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,349 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,350 ^~~~~~~~~~~ 2022-12-03T16:45:33,350 P7_PROFILE 2022-12-03T16:45:33,354 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,355 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,356 ^~~~~~~~~~~ 2022-12-03T16:45:33,356 P7_PROFILE 2022-12-03T16:45:33,357 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,357 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,358 ^~~~~~~~~~~ 2022-12-03T16:45:33,358 P7_PROFILE 2022-12-03T16:45:33,359 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-03T16:45:33,359 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,360 #error "No vector implementation enabled" 2022-12-03T16:45:33,360 ^~~~~ 2022-12-03T16:45:33,362 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,363 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,373 ^~~~~~ 2022-12-03T16:45:33,374 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,375 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,375 ^~~~~~ 2022-12-03T16:45:33,376 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,377 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,378 ^~~~~~~~~~~ 2022-12-03T16:45:33,378 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,379 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,380 ^~~~~~ 2022-12-03T16:45:33,381 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,381 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,382 ^~~~~~ 2022-12-03T16:45:33,383 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,384 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,384 ^~~~~~~~~~~ 2022-12-03T16:45:33,385 P7_PROFILE 2022-12-03T16:45:33,385 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,386 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,387 ^~~~~~~~~~~ 2022-12-03T16:45:33,388 P7_PROFILE 2022-12-03T16:45:33,389 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,389 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,390 ^~~~~~~~~~~ 2022-12-03T16:45:33,391 P7_PROFILE 2022-12-03T16:45:33,392 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,393 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,394 ^~~~~~~~~~~ 2022-12-03T16:45:33,394 P7_PROFILE 2022-12-03T16:45:33,395 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,396 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,397 ^~~~~~~~~~~ 2022-12-03T16:45:33,397 P7_PROFILE 2022-12-03T16:45:33,397 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,398 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,399 ^~~~~~~~~~~ 2022-12-03T16:45:33,400 P7_PROFILE 2022-12-03T16:45:33,401 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,402 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,403 ^~~~~~~~~~~ 2022-12-03T16:45:33,404 P7_PROFILE 2022-12-03T16:45:33,404 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,405 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,406 ^~~~~~ 2022-12-03T16:45:33,407 P7_GMX 2022-12-03T16:45:33,408 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,408 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,408 ^~~~~~ 2022-12-03T16:45:33,409 P7_GMX 2022-12-03T16:45:33,409 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,410 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,411 ^~~~~~~~~~~ 2022-12-03T16:45:33,412 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,412 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,413 ^~~~~~ 2022-12-03T16:45:33,414 P7_GMX 2022-12-03T16:45:33,415 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,416 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,417 ^~~~~~~~~~~ 2022-12-03T16:45:33,418 P7_PROFILE 2022-12-03T16:45:33,418 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,419 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,420 ^~~~~~~~~~~ 2022-12-03T16:45:33,421 P7_PROFILE 2022-12-03T16:45:33,422 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,422 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,423 ^~~~~~~~~~~ 2022-12-03T16:45:33,424 P7_PROFILE 2022-12-03T16:45:33,425 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,426 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,426 ^~~~~~ 2022-12-03T16:45:33,427 P7_GMX 2022-12-03T16:45:33,428 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,429 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,429 ^~~~~~ 2022-12-03T16:45:33,430 P7_GMX 2022-12-03T16:45:33,430 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,431 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,431 ^~~~~~ 2022-12-03T16:45:33,432 P7_GMX 2022-12-03T16:45:33,432 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,433 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,434 ^~~~~~ 2022-12-03T16:45:33,434 P7_GMX 2022-12-03T16:45:33,435 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,436 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,436 ^~~~~~ 2022-12-03T16:45:33,437 P7_GMX 2022-12-03T16:45:33,438 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,439 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,439 ^~~~~~~~~~~ 2022-12-03T16:45:33,440 P7_PROFILE 2022-12-03T16:45:33,441 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,441 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,442 ^~~~~~~~~~~ 2022-12-03T16:45:33,442 P7_PROFILE 2022-12-03T16:45:33,443 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,443 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,444 ^~~~~~~~~~~ 2022-12-03T16:45:33,444 P7_PROFILE 2022-12-03T16:45:33,445 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,445 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,446 ^~~~~~~~~~~ 2022-12-03T16:45:33,446 P7_PROFILE 2022-12-03T16:45:33,447 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,447 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,447 ^~~~~~~~~~~ 2022-12-03T16:45:33,448 P7_PROFILE 2022-12-03T16:45:33,449 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,449 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,450 ^~~~~~~~~~~ 2022-12-03T16:45:33,450 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,451 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,451 ^~~~~~~~~~~ 2022-12-03T16:45:33,452 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,453 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,453 ^~~~~~~~~~~ 2022-12-03T16:45:33,453 P7_PROFILE 2022-12-03T16:45:33,454 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,455 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,455 ^~~~~~~~~~~ 2022-12-03T16:45:33,456 P7_PROFILE 2022-12-03T16:45:33,457 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,458 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,459 ^~~~~~~~~~~ 2022-12-03T16:45:33,460 P7_PROFILE 2022-12-03T16:45:33,461 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,462 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,462 ^~~~~~~~~~~ 2022-12-03T16:45:33,463 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,464 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,464 ^~~~~~~~~~~ 2022-12-03T16:45:33,465 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,465 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,466 ^~~~~~~~~~~ 2022-12-03T16:45:33,467 P7_PROFILE 2022-12-03T16:45:33,467 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,468 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:33,469 ^~~~~~~~~~~ 2022-12-03T16:45:33,469 P7_PROFILE 2022-12-03T16:45:33,470 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,471 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,472 ^~~~~~~~~~~ 2022-12-03T16:45:33,472 P7_PROFILE 2022-12-03T16:45:33,473 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,473 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:33,474 ^~~~~~~~~~~ 2022-12-03T16:45:33,474 P7_PROFILE 2022-12-03T16:45:33,475 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-03T16:45:33,475 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,476 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-03T16:45:33,477 ^~~~~~~~~~~ 2022-12-03T16:45:33,478 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-03T16:45:33,482 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-03T16:45:33,483 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,484 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-03T16:45:33,484 ^~~~~~~~~~~ 2022-12-03T16:45:33,485 P7_PROFILE 2022-12-03T16:45:33,486 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-03T16:45:33,489 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-03T16:45:33,490 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,490 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-03T16:45:33,491 ^~~~~~~~~~~ 2022-12-03T16:45:33,491 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-03T16:45:33,492 if ( size <= 0 ) { \ 2022-12-03T16:45:33,492 ^~~~ 2022-12-03T16:45:33,493 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-03T16:45:33,494 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-03T16:45:33,494 ^~~~~~~~~~~ 2022-12-03T16:45:33,495 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-03T16:45:33,496 if ( size <= 0 ) { \ 2022-12-03T16:45:33,497 ^~~~ 2022-12-03T16:45:33,497 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-03T16:45:33,498 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-03T16:45:33,498 ^ 2022-12-03T16:45:33,499 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-03T16:45:33,499 if ( size <= 0 ) { \ 2022-12-03T16:45:33,500 ^~~~ 2022-12-03T16:45:33,500 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-03T16:45:33,501 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-03T16:45:33,502 ^ 2022-12-03T16:45:33,502 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-03T16:45:33,503 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-03T16:45:33,504 ^~~~ 2022-12-03T16:45:33,505 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-03T16:45:33,505 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-03T16:45:33,506 ^ 2022-12-03T16:45:33,506 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-03T16:45:33,507 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-03T16:45:33,507 ^~~~ 2022-12-03T16:45:33,508 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,509 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-03T16:45:33,510 ^~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,510 p7_profile_Reuse 2022-12-03T16:45:33,511 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,511 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-03T16:45:33,511 ^~~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,512 p7_profile_Reuse 2022-12-03T16:45:33,513 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,513 if (om) p7_oprofile_Destroy(om); 2022-12-03T16:45:33,514 ^~~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,515 p7_profile_Destroy 2022-12-03T16:45:33,515 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-03T16:45:33,516 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,516 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-03T16:45:33,517 ^~~~~~~~~~~ 2022-12-03T16:45:33,517 P7_PROFILE 2022-12-03T16:45:33,518 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-03T16:45:33,519 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-03T16:45:33,519 ^ 2022-12-03T16:45:33,520 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:33,521 for (i = 0; i < cache->n; i++) 2022-12-03T16:45:33,522 ^ 2022-12-03T16:45:33,522 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-03T16:45:33,523 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-03T16:45:33,524 ^~~~~~~~~~~~~~~~~~ 2022-12-03T16:45:33,524 p7_profile_Sizeof 2022-12-03T16:45:33,525 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-03T16:45:33,526 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,527 P7_OPROFILE *om; 2022-12-03T16:45:33,528 ^~~~~~~~~~~ 2022-12-03T16:45:33,529 P7_PROFILE 2022-12-03T16:45:33,529 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:33,530 for (i = 0; i < cache->n; i++) 2022-12-03T16:45:33,531 ^ 2022-12-03T16:45:33,531 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-03T16:45:33,532 if (om->name) free(om->name); 2022-12-03T16:45:33,533 ^~ 2022-12-03T16:45:33,534 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-03T16:45:33,535 if (om->name) free(om->name); 2022-12-03T16:45:33,535 ^~ 2022-12-03T16:45:33,536 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-03T16:45:33,536 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-03T16:45:33,537 ^~ 2022-12-03T16:45:33,537 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-03T16:45:33,538 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:33,538 for (i = 0; i < cache->n; i++) 2022-12-03T16:45:33,539 ^ 2022-12-03T16:45:33,694 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-03T16:45:33,695 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,696 #error "No vector implementation enabled" 2022-12-03T16:45:33,696 ^~~~~ 2022-12-03T16:45:33,697 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,698 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,698 ^~~~~~ 2022-12-03T16:45:33,699 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,699 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,700 ^~~~~~ 2022-12-03T16:45:33,701 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,702 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,702 ^~~~~~ 2022-12-03T16:45:33,703 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,704 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,705 ^~~~~~ 2022-12-03T16:45:33,706 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,706 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,707 ^~~~~~~~~~~ 2022-12-03T16:45:33,708 P7_PROFILE 2022-12-03T16:45:33,709 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,709 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,710 ^~~~~~~~~~~ 2022-12-03T16:45:33,711 P7_PROFILE 2022-12-03T16:45:33,712 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,712 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,713 ^~~~~~~~~~~ 2022-12-03T16:45:33,714 P7_PROFILE 2022-12-03T16:45:33,714 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,715 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,715 ^~~~~~~~~~~ 2022-12-03T16:45:33,716 P7_PROFILE 2022-12-03T16:45:33,717 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,717 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,718 ^~~~~~~~~~~ 2022-12-03T16:45:33,722 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,723 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,723 ^~~~~~~~~~~ 2022-12-03T16:45:33,724 P7_PROFILE 2022-12-03T16:45:33,725 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,726 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,726 ^~~~~~~~~~~ 2022-12-03T16:45:33,727 P7_PROFILE 2022-12-03T16:45:33,729 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,730 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,731 ^~~~~~~~~~~ 2022-12-03T16:45:33,731 P7_PROFILE 2022-12-03T16:45:33,732 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,733 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,734 ^~~~~~ 2022-12-03T16:45:33,734 P7_GMX 2022-12-03T16:45:33,736 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,737 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,737 ^~~~~~ 2022-12-03T16:45:33,738 P7_GMX 2022-12-03T16:45:33,739 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,740 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,740 ^~~~~~ 2022-12-03T16:45:33,741 P7_GMX 2022-12-03T16:45:33,742 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,743 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,743 ^~~~~~ 2022-12-03T16:45:33,743 P7_GMX 2022-12-03T16:45:33,748 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,749 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,749 ^~~~~~~~~~~ 2022-12-03T16:45:33,750 P7_PROFILE 2022-12-03T16:45:33,750 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-03T16:45:33,751 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,752 #error "No vector implementation enabled" 2022-12-03T16:45:33,752 ^~~~~ 2022-12-03T16:45:33,753 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,754 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,754 ^~~~~~~~~~~ 2022-12-03T16:45:33,755 P7_PROFILE 2022-12-03T16:45:33,755 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,756 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,757 ^~~~~~ 2022-12-03T16:45:33,758 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,758 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,759 ^~~~~~ 2022-12-03T16:45:33,760 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,761 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,761 ^~~~~~ 2022-12-03T16:45:33,762 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,762 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,763 ^~~~~~ 2022-12-03T16:45:33,764 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,765 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,765 ^~~~~~~~~~~ 2022-12-03T16:45:33,765 P7_PROFILE 2022-12-03T16:45:33,766 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,767 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,767 ^~~~~~~~~~~ 2022-12-03T16:45:33,768 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,769 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,769 ^~~~~~~~~~~ 2022-12-03T16:45:33,770 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,770 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,771 ^~~~~~~~~~~ 2022-12-03T16:45:33,772 P7_PROFILE 2022-12-03T16:45:33,772 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,773 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,773 ^~~~~~~~~~~ 2022-12-03T16:45:33,774 P7_PROFILE 2022-12-03T16:45:33,774 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,775 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,776 ^~~~~~~~~~~ 2022-12-03T16:45:33,776 P7_PROFILE 2022-12-03T16:45:33,777 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,777 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,778 ^~~~~~~~~~~ 2022-12-03T16:45:33,779 P7_PROFILE 2022-12-03T16:45:33,779 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,780 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,781 ^~~~~~~~~~~ 2022-12-03T16:45:33,781 P7_PROFILE 2022-12-03T16:45:33,782 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,782 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,783 ^~~~~~~~~~~ 2022-12-03T16:45:33,784 P7_PROFILE 2022-12-03T16:45:33,784 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,785 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:33,785 ^~~~~~~~~~~ 2022-12-03T16:45:33,786 P7_PROFILE 2022-12-03T16:45:33,787 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,788 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,788 ^~~~~~~~~~~ 2022-12-03T16:45:33,789 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,789 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,790 ^~~~~~~~~~~ 2022-12-03T16:45:33,791 P7_PROFILE 2022-12-03T16:45:33,792 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,793 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,794 ^~~~~~~~~~~ 2022-12-03T16:45:33,794 P7_PROFILE 2022-12-03T16:45:33,795 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,795 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,796 ^~~~~~~~~~~ 2022-12-03T16:45:33,797 P7_PROFILE 2022-12-03T16:45:33,797 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,798 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,798 ^~~~~~ 2022-12-03T16:45:33,799 P7_GMX 2022-12-03T16:45:33,799 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,800 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,800 ^~~~~~ 2022-12-03T16:45:33,801 P7_GMX 2022-12-03T16:45:33,801 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,802 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,803 ^~~~~~ 2022-12-03T16:45:33,803 P7_GMX 2022-12-03T16:45:33,804 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,804 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,805 ^~~~~~ 2022-12-03T16:45:33,805 P7_GMX 2022-12-03T16:45:33,806 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,807 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,807 ^~~~~~~~~~~ 2022-12-03T16:45:33,808 P7_PROFILE 2022-12-03T16:45:33,809 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,809 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,810 ^~~~~~~~~~~ 2022-12-03T16:45:33,810 P7_PROFILE 2022-12-03T16:45:33,812 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,813 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,813 ^~~~~~~~~~~ 2022-12-03T16:45:33,814 P7_PROFILE 2022-12-03T16:45:33,815 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,816 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,816 ^~~~~~~~~~~ 2022-12-03T16:45:33,817 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,818 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,819 ^~~~~~~~~~~ 2022-12-03T16:45:33,820 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,820 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,821 ^~~~~~~~~~~ 2022-12-03T16:45:33,821 P7_PROFILE 2022-12-03T16:45:33,822 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,822 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,823 ^~~~~~~~~~~ 2022-12-03T16:45:33,823 P7_PROFILE 2022-12-03T16:45:33,828 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,828 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:33,829 ^~~~~~~~~~~ 2022-12-03T16:45:33,829 P7_PROFILE 2022-12-03T16:45:33,932 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-03T16:45:33,933 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-03T16:45:33,933 #error "No vector implementation enabled" 2022-12-03T16:45:33,934 ^~~~~ 2022-12-03T16:45:33,935 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,935 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-03T16:45:33,936 ^~~~~~ 2022-12-03T16:45:33,936 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,936 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-03T16:45:33,937 ^~~~~~ 2022-12-03T16:45:33,937 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,938 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-03T16:45:33,938 ^~~~~~ 2022-12-03T16:45:33,939 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-03T16:45:33,939 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-03T16:45:33,940 ^~~~~~ 2022-12-03T16:45:33,940 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,941 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-03T16:45:33,942 ^~~~~~~~~~~ 2022-12-03T16:45:33,942 P7_PROFILE 2022-12-03T16:45:33,944 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,945 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-03T16:45:33,945 ^~~~~~~~~~~ 2022-12-03T16:45:33,945 P7_PROFILE 2022-12-03T16:45:33,947 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,947 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-03T16:45:33,948 ^~~~~~~~~~~ 2022-12-03T16:45:33,948 P7_PROFILE 2022-12-03T16:45:33,950 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,950 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-03T16:45:33,951 ^~~~~~~~~~~ 2022-12-03T16:45:33,951 P7_PROFILE 2022-12-03T16:45:33,953 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,954 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-03T16:45:33,955 ^~~~~~~~~~~ 2022-12-03T16:45:33,959 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,960 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-03T16:45:33,960 ^~~~~~~~~~~ 2022-12-03T16:45:33,961 P7_PROFILE 2022-12-03T16:45:33,964 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,964 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-03T16:45:33,965 ^~~~~~~~~~~ 2022-12-03T16:45:33,966 P7_PROFILE 2022-12-03T16:45:33,968 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,968 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,969 ^~~~~~~~~~~ 2022-12-03T16:45:33,969 P7_PROFILE 2022-12-03T16:45:33,970 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,971 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,972 ^~~~~~ 2022-12-03T16:45:33,972 P7_GMX 2022-12-03T16:45:33,973 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,974 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,975 ^~~~~~ 2022-12-03T16:45:33,975 P7_GMX 2022-12-03T16:45:33,976 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,977 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,977 ^~~~~~ 2022-12-03T16:45:33,978 P7_GMX 2022-12-03T16:45:33,979 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-03T16:45:33,979 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-03T16:45:33,980 ^~~~~~ 2022-12-03T16:45:33,980 P7_GMX 2022-12-03T16:45:33,984 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,985 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-03T16:45:33,985 ^~~~~~~~~~~ 2022-12-03T16:45:33,986 P7_PROFILE 2022-12-03T16:45:33,987 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,988 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-03T16:45:33,988 ^~~~~~~~~~~ 2022-12-03T16:45:33,989 P7_PROFILE 2022-12-03T16:45:33,990 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,991 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-03T16:45:33,991 ^~~~~~~~~~~ 2022-12-03T16:45:33,992 P7_PROFILE 2022-12-03T16:45:33,993 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,993 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-03T16:45:33,993 ^~~~~~~~~~~ 2022-12-03T16:45:33,994 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-03T16:45:33,994 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-03T16:45:33,995 ^~~~~~~~~~~ 2022-12-03T16:45:33,995 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,996 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-03T16:45:33,996 ^~~~~~~~~~~ 2022-12-03T16:45:33,997 P7_PROFILE 2022-12-03T16:45:33,997 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:33,998 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-03T16:45:33,998 ^~~~~~~~~~~ 2022-12-03T16:45:33,998 P7_PROFILE 2022-12-03T16:45:34,004 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-03T16:45:34,005 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-03T16:45:34,005 ^~~~~~~~~~~ 2022-12-03T16:45:34,005 P7_PROFILE 2022-12-03T16:45:34,014 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-03T16:45:34,014 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,014 if (ranges[lo].lower > end) return -1; 2022-12-03T16:45:34,015 ^ 2022-12-03T16:45:34,015 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,015 if (ranges[hi].upper < start) return -1; 2022-12-03T16:45:34,016 ^ 2022-12-03T16:45:34,016 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,017 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-03T16:45:34,017 ^ 2022-12-03T16:45:34,017 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,018 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-03T16:45:34,018 ^~ 2022-12-03T16:45:34,018 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,019 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-03T16:45:34,019 ^~ 2022-12-03T16:45:34,019 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,020 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-03T16:45:34,020 ^~ 2022-12-03T16:45:34,020 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,021 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-03T16:45:34,021 ^~ 2022-12-03T16:45:34,022 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-03T16:45:34,022 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-03T16:45:34,022 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-03T16:45:34,023 ^~ 2022-12-03T16:45:34,023 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,023 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-03T16:45:34,024 ^~ 2022-12-03T16:45:34,024 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-03T16:45:34,024 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,025 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:45:34,025 ^ 2022-12-03T16:45:34,025 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:45:34,026 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-03T16:45:34,026 ^~~~~~~ 2022-12-03T16:45:34,026 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:45:34,027 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-03T16:45:34,027 ^~~ 2022-12-03T16:45:34,027 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-03T16:45:34,028 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-03T16:45:34,028 ^~~~~~~ 2022-12-03T16:45:34,028 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,029 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-03T16:45:34,029 ^ 2022-12-03T16:45:34,029 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-03T16:45:34,030 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-03T16:45:34,030 ^~~~~~~ 2022-12-03T16:45:34,030 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-03T16:45:34,031 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-03T16:45:34,031 ^~~ 2022-12-03T16:45:34,032 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-03T16:45:34,032 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-03T16:45:34,032 ^~~~~~~ 2022-12-03T16:45:34,033 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,033 for (j= start; j<=end; j++) 2022-12-03T16:45:34,033 ^~ 2022-12-03T16:45:34,034 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-03T16:45:34,034 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-03T16:45:34,034 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-03T16:45:34,035 ^~ 2022-12-03T16:45:34,035 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-03T16:45:34,035 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-03T16:45:34,036 ^~ 2022-12-03T16:45:34,038 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-03T16:45:34,039 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,039 for (i=0; iseq_count; i++) { 2022-12-03T16:45:34,040 ^ 2022-12-03T16:45:34,044 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,044 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-03T16:45:34,045 ^~ 2022-12-03T16:45:34,045 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,045 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-03T16:45:34,046 ^~ 2022-12-03T16:45:34,046 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,046 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-03T16:45:34,047 ^~ 2022-12-03T16:45:34,047 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-03T16:45:34,047 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-03T16:45:34,048 ^~ 2022-12-03T16:45:34,048 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,049 for (i=0; iambig_list->count; i++) { 2022-12-03T16:45:34,049 ^ 2022-12-03T16:45:34,049 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,050 for (i=0; iseq_count; i++) 2022-12-03T16:45:34,050 ^ 2022-12-03T16:45:34,051 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-03T16:45:34,052 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-03T16:45:34,052 for (i=0; iseq_count; i++) { 2022-12-03T16:45:34,052 ^ 2022-12-03T16:45:34,143 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-03T16:45:34,144 !! 2022-12-03T16:45:34,145 ############################ 2022-12-03T16:45:34,145 # Package would be ignored # 2022-12-03T16:45:34,145 ############################ 2022-12-03T16:45:34,146 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-03T16:45:34,146 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:45:34,147 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-03T16:45:34,147 because it may contain data files, but this behavior is likely to change 2022-12-03T16:45:34,147 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:45:34,148 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-03T16:45:34,148 the `packages` configuration field or the proper discovery methods 2022-12-03T16:45:34,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:45:34,149 instead of `find_packages(...)`/`find:`). 2022-12-03T16:45:34,150 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:45:34,150 documentation page. 2022-12-03T16:45:34,151 !! 2022-12-03T16:45:34,151 check.warn(importable) 2022-12-03T16:45:34,152 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-03T16:45:34,152 !! 2022-12-03T16:45:34,153 ############################ 2022-12-03T16:45:34,154 # Package would be ignored # 2022-12-03T16:45:34,154 ############################ 2022-12-03T16:45:34,154 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-03T16:45:34,155 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:45:34,156 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-03T16:45:34,156 because it may contain data files, but this behavior is likely to change 2022-12-03T16:45:34,157 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:45:34,158 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-03T16:45:34,158 the `packages` configuration field or the proper discovery methods 2022-12-03T16:45:34,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:45:34,159 instead of `find_packages(...)`/`find:`). 2022-12-03T16:45:34,160 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:45:34,160 documentation page. 2022-12-03T16:45:34,162 !! 2022-12-03T16:45:34,162 check.warn(importable) 2022-12-03T16:45:34,163 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-03T16:45:34,164 !! 2022-12-03T16:45:34,165 ############################ 2022-12-03T16:45:34,165 # Package would be ignored # 2022-12-03T16:45:34,166 ############################ 2022-12-03T16:45:34,166 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-03T16:45:34,166 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:45:34,167 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-03T16:45:34,168 because it may contain data files, but this behavior is likely to change 2022-12-03T16:45:34,168 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:45:34,169 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-03T16:45:34,170 the `packages` configuration field or the proper discovery methods 2022-12-03T16:45:34,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:45:34,171 instead of `find_packages(...)`/`find:`). 2022-12-03T16:45:34,171 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:45:34,172 documentation page. 2022-12-03T16:45:34,173 !! 2022-12-03T16:45:34,174 check.warn(importable) 2022-12-03T16:45:34,174 /tmp/pip-build-env-qn8h82ok/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-03T16:45:34,175 !! 2022-12-03T16:45:34,176 ############################ 2022-12-03T16:45:34,176 # Package would be ignored # 2022-12-03T16:45:34,177 ############################ 2022-12-03T16:45:34,177 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-03T16:45:34,178 but it is not listed in the `packages` configuration of setuptools. 2022-12-03T16:45:34,178 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-03T16:45:34,179 because it may contain data files, but this behavior is likely to change 2022-12-03T16:45:34,179 in future versions of setuptools (and therefore is considered deprecated). 2022-12-03T16:45:34,180 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-03T16:45:34,180 the `packages` configuration field or the proper discovery methods 2022-12-03T16:45:34,181 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-03T16:45:34,181 instead of `find_packages(...)`/`find:`). 2022-12-03T16:45:34,182 You can read more about "package discovery" and "data files" on setuptools 2022-12-03T16:45:34,182 documentation page. 2022-12-03T16:45:34,183 !! 2022-12-03T16:45:34,184 check.warn(importable) 2022-12-03T16:45:34,184 checking whether can be included... yes 2022-12-03T16:45:34,185 checking whether can be included... yes 2022-12-03T16:45:34,185 checking whether can be included... yes 2022-12-03T16:45:34,185 checking whether can be included... yes 2022-12-03T16:45:34,186 checking whether can be included... yes 2022-12-03T16:45:34,186 checking whether can be included... yes 2022-12-03T16:45:34,187 checking whether can be included... yes 2022-12-03T16:45:34,187 checking whether can be included... yes 2022-12-03T16:45:34,188 checking whether can be included... yes 2022-12-03T16:45:34,188 checking whether can be included... yes 2022-12-03T16:45:34,188 checking whether can be included... yes 2022-12-03T16:45:34,189 checking whether can be included... yes 2022-12-03T16:45:34,189 checking whether can be included... yes 2022-12-03T16:45:34,190 checking whether function 'aligned_alloc' is available... no 2022-12-03T16:45:34,190 checking whether function 'erfc' is available... no 2022-12-03T16:45:34,190 checking whether function 'getpid' is available... yes 2022-12-03T16:45:34,191 checking whether function '_mm_malloc' is available... no 2022-12-03T16:45:34,191 checking whether function 'popen' is available... yes 2022-12-03T16:45:34,191 checking whether function 'posix_memalign' is available... yes 2022-12-03T16:45:34,192 checking whether function 'strcasecmp' is available... yes 2022-12-03T16:45:34,192 checking whether function 'strsep' is available... yes 2022-12-03T16:45:34,193 checking whether function 'sysconf' is available... yes 2022-12-03T16:45:34,193 checking whether function 'sysctl' is available... yes 2022-12-03T16:45:34,193 checking whether function 'times' is available... yes 2022-12-03T16:45:34,194 checking whether function 'fseeko' is available... yes 2022-12-03T16:45:34,194 checking whether can be included... yes 2022-12-03T16:45:34,195 checking whether can be included... yes 2022-12-03T16:45:34,195 checking whether can be included... yes 2022-12-03T16:45:34,195 checking whether can be included... yes 2022-12-03T16:45:34,196 checking whether can be included... yes 2022-12-03T16:45:34,196 checking whether can be included... yes 2022-12-03T16:45:34,197 checking whether can be included... yes 2022-12-03T16:45:34,197 checking whether can be included... yes 2022-12-03T16:45:34,198 checking whether function 'mkstemp' is available... yes 2022-12-03T16:45:34,198 checking whether function 'popen' is available... yes 2022-12-03T16:45:34,198 checking whether function 'putenv' is available... yes 2022-12-03T16:45:34,199 checking whether function 'strcasecmp' is available... yes 2022-12-03T16:45:34,199 checking whether function 'strsep' is available... yes 2022-12-03T16:45:34,200 checking whether function 'times' is available... yes 2022-12-03T16:45:34,200 checking whether function 'getpid' is available... yes 2022-12-03T16:45:34,200 checking whether function 'sysctl' is available... yes 2022-12-03T16:45:34,201 checking whether function 'sysconf' is available... yes 2022-12-03T16:45:34,201 checking whether function 'getcwd' is available... yes 2022-12-03T16:45:34,201 checking whether function 'chmod' is available... yes 2022-12-03T16:45:34,202 checking whether function 'stat' is available... yes 2022-12-03T16:45:34,202 checking whether function 'fstat' is available... yes 2022-12-03T16:45:34,202 checking whether function 'erfc' is available... no 2022-12-03T16:45:34,202 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-03T16:45:34,424 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-03T16:45:34,475 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpxhovclsq[/] 2022-12-03T16:45:34,475 [bold magenta]cwd[/]: /tmp/pip-wheel-ng4hpfyt/pyhmmer_788c45e0cacb418e9e73f13ef05dbb3f 2022-12-03T16:45:34,476 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-03T16:45:34,481 ERROR: Failed building wheel for pyhmmer 2022-12-03T16:45:34,486 Failed to build pyhmmer 2022-12-03T16:45:34,488 ERROR: Failed to build one or more wheels 2022-12-03T16:45:34,490 Exception information: 2022-12-03T16:45:34,490 Traceback (most recent call last): 2022-12-03T16:45:34,490 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-03T16:45:34,490 status = run_func(*args) 2022-12-03T16:45:34,490 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-03T16:45:34,490 return func(self, options, args) 2022-12-03T16:45:34,490 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-03T16:45:34,490 raise CommandError("Failed to build one or more wheels") 2022-12-03T16:45:34,490 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-03T16:45:34,499 Removed build tracker: '/tmp/pip-build-tracker-aefx6itn'