2022-12-04T14:56:25,937 Created temporary directory: /tmp/pip-ephem-wheel-cache-alkwk7e2 2022-12-04T14:56:25,942 Created temporary directory: /tmp/pip-build-tracker-481n8an7 2022-12-04T14:56:25,943 Initialized build tracking at /tmp/pip-build-tracker-481n8an7 2022-12-04T14:56:25,943 Created build tracker: /tmp/pip-build-tracker-481n8an7 2022-12-04T14:56:25,944 Entered build tracker: /tmp/pip-build-tracker-481n8an7 2022-12-04T14:56:25,945 Created temporary directory: /tmp/pip-wheel-40kroefe 2022-12-04T14:56:25,953 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T14:56:25,958 Created temporary directory: /tmp/pip-ephem-wheel-cache-mow5ewaa 2022-12-04T14:56:26,009 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T14:56:26,016 2 location(s) to search for versions of pyhmmer: 2022-12-04T14:56:26,016 * https://pypi.org/simple/pyhmmer/ 2022-12-04T14:56:26,016 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T14:56:26,017 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-04T14:56:26,018 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-04T14:56:26,022 Found index url https://pypi.org/simple 2022-12-04T14:56:26,330 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-04T14:56:26,574 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T14:56:26,592 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T14:56:26,593 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T14:56:26,593 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-12-04T14:56:26,718 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,718 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,719 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/36/11/9211817ba7eb6aa848578017977e3ea4d42a5f2ba76a5a2c0c71d5984d6a/pyhmmer-0.4.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,726 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a6/ee5ca7c4a3dcf82cf0f0dd5418c9fddad82149867352332d1feed8528cec/pyhmmer-0.4.5-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,727 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,727 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,738 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,739 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,740 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-04T14:56:26,741 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,741 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,742 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-04T14:56:26,764 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,764 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,765 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-04T14:56:26,771 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,772 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,772 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,810 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,811 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,811 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,812 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,812 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,813 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,813 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,814 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,815 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-04T14:56:26,816 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,817 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,817 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,818 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,818 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,819 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,822 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,823 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,823 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,824 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-12-04T14:56:26,825 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,827 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,827 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ab/c0/3ef8ced20ac64ab83d16d855b23540751c1626d1d5b8e8cee4440bcabfb3/pyhmmer-0.7.0rc4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,862 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/df/a287f8b111ba8688c5c58e772e6d276fb3c14515249e39a50515160a85d2/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,862 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/e5/96ce896b08d17b9114817c947683e144e760f58bd9f48f53f5436ef25079/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,863 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/a5/aa8fc0a41d66c95b60097ed9aa5d11cd9b1be853c1ffafeca1e42f1095b6/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,863 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/7d/284867ffb3cd7eac7de62716e1dbb495331004766acf8f49419f0d04e103/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,864 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,864 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T14:56:26,865 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2022-12-04T14:56:26,866 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T14:56:26,867 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T14:56:26,869 Found index url https://www.piwheels.org/simple 2022-12-04T14:56:32,921 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-04T14:56:32,923 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T14:56:32,924 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-04T14:56:32,970 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-04T14:56:33,000 Collecting pyhmmer==0.7.0rc4 2022-12-04T14:56:33,005 Created temporary directory: /tmp/pip-unpack-trplb_g9 2022-12-04T14:56:33,732 Downloading pyhmmer-0.7.0rc4.tar.gz (11.0 MB) 2022-12-04T14:56:43,159 Added pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz to build tracker '/tmp/pip-build-tracker-481n8an7' 2022-12-04T14:56:43,168 Created temporary directory: /tmp/pip-build-env-tw4cmzph 2022-12-04T14:56:43,180 Installing build dependencies: started 2022-12-04T14:56:43,182 Running command pip subprocess to install build dependencies 2022-12-04T14:56:45,880 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-04T14:56:46,671 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T14:56:46,723 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T14:56:54,695 Collecting setuptools>=46.4 2022-12-04T14:56:59,788 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-04T14:57:02,924 Collecting cython~=0.29.16 2022-12-04T14:57:03,465 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-04T14:57:09,088 Installing collected packages: setuptools, cython 2022-12-04T14:57:19,064 Creating /tmp/pip-build-env-tw4cmzph/overlay/bin 2022-12-04T14:57:19,070 changing mode of /tmp/pip-build-env-tw4cmzph/overlay/bin/cygdb to 755 2022-12-04T14:57:19,074 changing mode of /tmp/pip-build-env-tw4cmzph/overlay/bin/cython to 755 2022-12-04T14:57:19,079 changing mode of /tmp/pip-build-env-tw4cmzph/overlay/bin/cythonize to 755 2022-12-04T14:57:19,126 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-04T14:57:19,160 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T14:57:19,160 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T14:57:19,670 Installing build dependencies: finished with status 'done' 2022-12-04T14:57:19,682 Getting requirements to build wheel: started 2022-12-04T14:57:19,684 Running command Getting requirements to build wheel 2022-12-04T14:57:22,472 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T14:57:22,691 Getting requirements to build wheel: finished with status 'done' 2022-12-04T14:57:22,727 Installing backend dependencies: started 2022-12-04T14:57:22,729 Running command pip subprocess to install backend dependencies 2022-12-04T14:57:25,588 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-04T14:57:26,373 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T14:57:26,434 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T14:57:27,328 Collecting wheel 2022-12-04T14:57:27,364 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-04T14:57:32,076 Installing collected packages: wheel 2022-12-04T14:57:32,352 Creating /tmp/pip-build-env-tw4cmzph/normal/bin 2022-12-04T14:57:32,356 changing mode of /tmp/pip-build-env-tw4cmzph/normal/bin/wheel to 755 2022-12-04T14:57:32,382 Successfully installed wheel-0.38.4 2022-12-04T14:57:32,413 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T14:57:32,413 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T14:57:32,771 Installing backend dependencies: finished with status 'done' 2022-12-04T14:57:32,777 Created temporary directory: /tmp/pip-modern-metadata-k6bh8h6v 2022-12-04T14:57:32,783 Preparing metadata (pyproject.toml): started 2022-12-04T14:57:32,785 Running command Preparing metadata (pyproject.toml) 2022-12-04T14:57:35,518 running dist_info 2022-12-04T14:57:35,549 creating /tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info 2022-12-04T14:57:35,558 writing /tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/PKG-INFO 2022-12-04T14:57:35,577 writing dependency_links to /tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/dependency_links.txt 2022-12-04T14:57:35,582 writing requirements to /tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/requires.txt 2022-12-04T14:57:35,584 writing top-level names to /tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/top_level.txt 2022-12-04T14:57:35,586 writing manifest file '/tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T14:57:35,697 reading manifest file '/tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T14:57:35,704 reading manifest template 'MANIFEST.in' 2022-12-04T14:57:36,957 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T14:57:36,958 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T14:57:36,962 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T14:57:36,966 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T14:57:36,969 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T14:57:36,972 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T14:57:36,976 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T14:57:36,979 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T14:57:36,982 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T14:57:36,986 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T14:57:36,989 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T14:57:36,993 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T14:57:36,996 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T14:57:36,999 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T14:57:37,003 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T14:57:37,003 adding license file 'COPYING' 2022-12-04T14:57:37,076 writing manifest file '/tmp/pip-modern-metadata-k6bh8h6v/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T14:57:37,079 creating '/tmp/pip-modern-metadata-k6bh8h6v/pyhmmer-0.7.0rc4.dist-info' 2022-12-04T14:57:37,475 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-04T14:57:37,492 Source in /tmp/pip-wheel-40kroefe/pyhmmer_c614552606e94cb8b920a2b753bf965d has version 0.7.0rc4, which satisfies requirement pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz 2022-12-04T14:57:37,494 Removed pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz from build tracker '/tmp/pip-build-tracker-481n8an7' 2022-12-04T14:57:37,511 Created temporary directory: /tmp/pip-unpack-_gx1q_l2 2022-12-04T14:57:37,512 Building wheels for collected packages: pyhmmer 2022-12-04T14:57:37,521 Created temporary directory: /tmp/pip-wheel-v2hc_kl9 2022-12-04T14:57:37,522 Destination directory: /tmp/pip-wheel-v2hc_kl9 2022-12-04T14:57:37,527 Building wheel for pyhmmer (pyproject.toml): started 2022-12-04T14:57:37,529 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-04T14:57:40,225 running bdist_wheel 2022-12-04T14:57:40,257 running build 2022-12-04T14:57:40,257 running build_py 2022-12-04T14:57:40,275 creating build 2022-12-04T14:57:40,276 creating build/lib.linux-armv7l-cpython-37 2022-12-04T14:57:40,278 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:40,281 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:40,288 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:40,292 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:40,297 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,299 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,305 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,309 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,312 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,316 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:40,322 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,324 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,329 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,333 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,336 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,340 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,344 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,347 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,351 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,354 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,359 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,364 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,369 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,373 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T14:57:40,380 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,382 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,387 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,392 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,396 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,400 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,403 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,408 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,411 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,415 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,418 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,423 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,427 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,431 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T14:57:40,434 running egg_info 2022-12-04T14:57:40,471 writing pyhmmer.egg-info/PKG-INFO 2022-12-04T14:57:40,477 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-04T14:57:40,481 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-04T14:57:40,484 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-04T14:57:40,520 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T14:57:40,564 reading manifest template 'MANIFEST.in' 2022-12-04T14:57:41,786 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T14:57:41,787 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T14:57:41,794 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T14:57:41,799 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T14:57:41,804 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T14:57:41,809 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T14:57:41,814 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T14:57:41,819 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T14:57:41,824 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T14:57:41,829 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T14:57:41,834 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T14:57:41,839 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T14:57:41,844 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T14:57:41,849 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T14:57:41,854 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T14:57:41,855 adding license file 'COPYING' 2022-12-04T14:57:41,954 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T14:57:41,982 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:41,983 !! 2022-12-04T14:57:41,984 ############################ 2022-12-04T14:57:41,984 # Package would be ignored # 2022-12-04T14:57:41,984 ############################ 2022-12-04T14:57:41,984 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-04T14:57:41,985 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:41,985 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-04T14:57:41,986 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:41,986 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:41,986 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-04T14:57:41,987 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:41,987 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:41,987 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:41,988 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:41,988 documentation page. 2022-12-04T14:57:41,989 !! 2022-12-04T14:57:41,990 check.warn(importable) 2022-12-04T14:57:41,990 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:41,990 !! 2022-12-04T14:57:41,991 ############################ 2022-12-04T14:57:41,991 # Package would be ignored # 2022-12-04T14:57:41,992 ############################ 2022-12-04T14:57:41,992 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-04T14:57:41,992 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:41,993 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-04T14:57:41,993 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:41,993 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:41,994 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-04T14:57:41,994 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:41,994 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:41,995 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:41,995 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:41,996 documentation page. 2022-12-04T14:57:41,996 !! 2022-12-04T14:57:41,997 check.warn(importable) 2022-12-04T14:57:41,997 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:41,997 !! 2022-12-04T14:57:41,998 ############################ 2022-12-04T14:57:41,999 # Package would be ignored # 2022-12-04T14:57:41,999 ############################ 2022-12-04T14:57:41,999 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-04T14:57:41,999 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,000 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-04T14:57:42,000 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,001 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,001 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-04T14:57:42,001 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,002 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,002 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,003 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,003 documentation page. 2022-12-04T14:57:42,004 !! 2022-12-04T14:57:42,004 check.warn(importable) 2022-12-04T14:57:42,004 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:42,005 !! 2022-12-04T14:57:42,006 ############################ 2022-12-04T14:57:42,006 # Package would be ignored # 2022-12-04T14:57:42,006 ############################ 2022-12-04T14:57:42,006 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-04T14:57:42,007 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,007 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-04T14:57:42,007 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,008 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,008 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-04T14:57:42,009 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,009 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,009 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,010 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,010 documentation page. 2022-12-04T14:57:42,011 !! 2022-12-04T14:57:42,011 check.warn(importable) 2022-12-04T14:57:42,012 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:42,012 !! 2022-12-04T14:57:42,013 ############################ 2022-12-04T14:57:42,013 # Package would be ignored # 2022-12-04T14:57:42,013 ############################ 2022-12-04T14:57:42,014 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-04T14:57:42,014 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,014 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-04T14:57:42,015 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,015 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,015 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-04T14:57:42,016 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,016 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,016 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,017 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,017 documentation page. 2022-12-04T14:57:42,018 !! 2022-12-04T14:57:42,018 check.warn(importable) 2022-12-04T14:57:42,019 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:42,019 !! 2022-12-04T14:57:42,020 ############################ 2022-12-04T14:57:42,020 # Package would be ignored # 2022-12-04T14:57:42,020 ############################ 2022-12-04T14:57:42,021 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-04T14:57:42,021 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,022 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-04T14:57:42,022 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,022 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,023 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-04T14:57:42,023 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,023 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,023 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,024 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,024 documentation page. 2022-12-04T14:57:42,025 !! 2022-12-04T14:57:42,026 check.warn(importable) 2022-12-04T14:57:42,026 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:42,026 !! 2022-12-04T14:57:42,027 ############################ 2022-12-04T14:57:42,027 # Package would be ignored # 2022-12-04T14:57:42,028 ############################ 2022-12-04T14:57:42,028 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-04T14:57:42,028 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,029 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-04T14:57:42,029 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,029 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,030 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-04T14:57:42,030 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,031 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,031 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,031 documentation page. 2022-12-04T14:57:42,032 !! 2022-12-04T14:57:42,033 check.warn(importable) 2022-12-04T14:57:42,033 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-04T14:57:42,033 !! 2022-12-04T14:57:42,034 ############################ 2022-12-04T14:57:42,034 # Package would be ignored # 2022-12-04T14:57:42,035 ############################ 2022-12-04T14:57:42,035 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-04T14:57:42,035 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:57:42,036 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-04T14:57:42,036 because it may contain data files, but this behavior is likely to change 2022-12-04T14:57:42,036 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:57:42,037 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-04T14:57:42,037 the `packages` configuration field or the proper discovery methods 2022-12-04T14:57:42,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:57:42,038 instead of `find_packages(...)`/`find:`). 2022-12-04T14:57:42,038 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:57:42,039 documentation page. 2022-12-04T14:57:42,039 !! 2022-12-04T14:57:42,040 check.warn(importable) 2022-12-04T14:57:42,062 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,067 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,074 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,080 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,085 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,091 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,108 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,112 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,119 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,124 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,130 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,136 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,156 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T14:57:42,160 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T14:57:42,162 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T14:57:42,168 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T14:57:42,173 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,175 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,178 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,182 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,186 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,190 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,196 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,200 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T14:57:42,204 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T14:57:42,208 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-04T14:57:42,210 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-04T14:57:42,214 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-04T14:57:42,216 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-04T14:57:42,220 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T14:57:42,222 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T14:57:42,229 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T14:57:42,237 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T14:57:42,244 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T14:57:42,359 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,360 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,370 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,375 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,379 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,386 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,393 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,405 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,411 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,415 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,422 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,430 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,440 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,445 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,449 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,456 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,463 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,756 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,812 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,817 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:42,941 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T14:57:43,081 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,083 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,097 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,106 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,119 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,129 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,144 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,162 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T14:57:43,385 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T14:57:43,387 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T14:57:43,396 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T14:57:43,408 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T14:57:43,418 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T14:57:43,643 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T14:57:43,645 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T14:57:43,650 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T14:57:43,654 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T14:57:43,659 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T14:57:43,661 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T14:57:43,666 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T14:57:43,671 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T14:57:43,676 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T14:57:43,681 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,683 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,737 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,753 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,954 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,964 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,969 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,975 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T14:57:43,979 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:43,980 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:43,986 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:43,990 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:43,995 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:43,999 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:44,003 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:44,006 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:44,014 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:44,018 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T14:57:44,033 running build_clib 2022-12-04T14:57:44,050 creating build/temp.linux-armv7l-cpython-37 2022-12-04T14:57:44,052 generating "divsufsort.h" for divsufsort library 2022-12-04T14:57:44,052 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-04T14:57:44,056 generating "esl_config.h" for easel library 2022-12-04T14:57:55,228 generating "p7_config.h" for hmmer library 2022-12-04T14:58:07,546 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-04T14:58:07,571 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-04T14:58:07,595 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T14:58:07,618 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T14:58:07,620 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-04T14:58:07,620 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-04T14:58:07,622 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-04T14:58:07,624 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T14:58:16,645 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T14:58:16,768 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_mixgev.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_gencode.c, vendor/easel/esl_alloc.c, vendor/easel/esl_gamma.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_avx.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_stack.c, vendor/easel/esl_vmx.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_rootfinder.c, vendor/easel/interface_lapack.c, vendor/easel/esl_mpi.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_mem.c, vendor/easel/esl_histogram.c, vendor/easel/esl_hmm.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_getopts.c, vendor/easel/esl_threads.c, vendor/easel/esl_recorder.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_neon.c, vendor/easel/esl_distance.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_msafile.c, vendor/easel/esl_composition.c, vendor/easel/esl_swat.c, vendor/easel/esl_keyhash.c, vendor/easel/interface_gsl.c, vendor/easel/esl_weibull.c, vendor/easel/esl_random.c, vendor/easel/esl_heap.c, vendor/easel/esl_sqio.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/easel.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_regexp.c, vendor/easel/esl_graph.c, vendor/easel/esl_sse.c, vendor/easel/esl_varint.c, vendor/easel/esl_arr2.c, vendor/easel/esl_buffer.c, vendor/easel/esl_gev.c, vendor/easel/esl_avx512.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_paml.c, vendor/easel/esl_tree.c, vendor/easel/esl_sq.c, vendor/easel/esl_arr3.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msa.c, vendor/easel/esl_normal.c, vendor/easel/esl_red_black.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_cluster.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_exponential.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_ssi.c, vendor/easel/esl_stats.c, vendor/easel/esl_huffman.c, vendor/easel/esl_wuss.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_rand64.c, vendor/easel/esl_json.c, vendor/easel/esl_stopwatch.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-04T14:58:16,777 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-04T14:58:16,779 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-04T14:58:16,780 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-04T14:58:16,781 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-04T14:58:16,782 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-04T14:58:16,782 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-04T14:58:16,783 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-04T14:58:16,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-04T14:58:16,785 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-04T14:58:16,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-04T14:58:16,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-04T14:58:18,617 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-04T14:58:18,619 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-04T14:58:19,049 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-04T14:58:19,050 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:19,050 if (alphatype != dd->abc_r->type) 2022-12-04T14:58:19,051 ^~ 2022-12-04T14:58:19,070 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-04T14:58:19,071 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:19,071 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-04T14:58:19,072 ^ 2022-12-04T14:58:19,072 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:19,073 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-04T14:58:19,073 ^ 2022-12-04T14:58:19,074 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:19,074 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-04T14:58:19,075 ^ 2022-12-04T14:58:19,075 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:19,076 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-04T14:58:19,076 ^ 2022-12-04T14:58:19,079 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:19,080 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-04T14:58:19,080 ^~ 2022-12-04T14:58:19,081 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:19,082 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-04T14:58:19,082 ^~ 2022-12-04T14:58:19,083 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:19,083 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T14:58:19,083 ^~ 2022-12-04T14:58:19,084 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:19,084 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T14:58:19,085 ^~ 2022-12-04T14:58:19,157 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-04T14:58:19,157 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T14:58:19,158 } 2022-12-04T14:58:19,158 ^ 2022-12-04T14:58:19,171 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-04T14:58:19,172 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T14:58:19,173 } 2022-12-04T14:58:19,173 ^ 2022-12-04T14:58:19,455 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-04T14:58:19,457 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-04T14:58:19,850 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-04T14:58:19,851 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:19,852 if (rank > h->n) 2022-12-04T14:58:19,852 ^ 2022-12-04T14:58:20,710 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-04T14:58:20,712 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-04T14:58:20,914 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-04T14:58:20,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-04T14:58:21,146 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-04T14:58:21,147 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,148 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-04T14:58:21,148 ^~ 2022-12-04T14:58:21,151 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,151 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T14:58:21,152 ^~ 2022-12-04T14:58:21,152 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,153 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T14:58:21,153 ^~ 2022-12-04T14:58:21,187 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-04T14:58:21,189 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,189 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,190 ^~ 2022-12-04T14:58:21,193 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-04T14:58:21,194 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,195 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,195 ^~ 2022-12-04T14:58:21,198 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-04T14:58:21,199 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,200 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,200 ^~ 2022-12-04T14:58:21,207 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-04T14:58:21,208 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,208 if (status != eslOK || nres != W) { 2022-12-04T14:58:21,209 ^~ 2022-12-04T14:58:21,212 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,212 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,213 ^~ 2022-12-04T14:58:21,235 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-04T14:58:21,236 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,237 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-04T14:58:21,237 ^ 2022-12-04T14:58:21,245 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,246 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-04T14:58:21,246 ^~ 2022-12-04T14:58:21,250 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-04T14:58:21,251 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,252 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-04T14:58:21,252 ^ 2022-12-04T14:58:21,254 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,255 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T14:58:21,255 ^~ 2022-12-04T14:58:21,257 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,258 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T14:58:21,258 ^ 2022-12-04T14:58:21,260 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,261 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T14:58:21,261 ^ 2022-12-04T14:58:21,263 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,263 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T14:58:21,264 ^ 2022-12-04T14:58:21,265 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,266 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T14:58:21,266 ^ 2022-12-04T14:58:21,268 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,269 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-04T14:58:21,269 ^ 2022-12-04T14:58:21,270 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,270 if (inx < volume->end_seq) break; 2022-12-04T14:58:21,271 ^ 2022-12-04T14:58:21,288 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,289 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-04T14:58:21,289 ^~ 2022-12-04T14:58:21,290 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,290 if (ncbi->index_start == -1 || inx > end) { 2022-12-04T14:58:21,291 ^~ 2022-12-04T14:58:21,291 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,292 if (ncbi->index_start == -1 || inx > end) { 2022-12-04T14:58:21,292 ^ 2022-12-04T14:58:21,293 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,293 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T14:58:21,294 ^~ 2022-12-04T14:58:21,294 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,295 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T14:58:21,295 ^~ 2022-12-04T14:58:21,295 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,296 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T14:58:21,296 ^~ 2022-12-04T14:58:21,297 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-04T14:58:21,297 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,298 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,298 ^~ 2022-12-04T14:58:21,299 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,299 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T14:58:21,300 ^~ 2022-12-04T14:58:21,300 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,301 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T14:58:21,301 ^~ 2022-12-04T14:58:21,310 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-04T14:58:21,310 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,311 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,311 ^~ 2022-12-04T14:58:21,313 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,313 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T14:58:21,314 ^~ 2022-12-04T14:58:21,331 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,331 if (ncbi->seq_apos - sq->doff < size) { 2022-12-04T14:58:21,332 ^ 2022-12-04T14:58:21,336 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-04T14:58:21,336 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,337 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,337 ^~ 2022-12-04T14:58:21,361 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,362 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T14:58:21,362 ^~ 2022-12-04T14:58:21,373 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-04T14:58:21,374 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,375 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T14:58:21,375 ^~ 2022-12-04T14:58:21,384 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,384 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-04T14:58:21,385 ^~ 2022-12-04T14:58:21,400 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-04T14:58:21,401 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,402 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T14:58:21,402 ^ 2022-12-04T14:58:21,404 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,405 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T14:58:21,405 ^ 2022-12-04T14:58:21,407 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,408 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T14:58:21,408 ^~ 2022-12-04T14:58:21,413 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-04T14:58:21,415 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,415 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T14:58:21,416 ^ 2022-12-04T14:58:21,417 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,418 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T14:58:21,418 ^ 2022-12-04T14:58:21,420 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:21,420 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T14:58:21,421 ^~ 2022-12-04T14:58:21,431 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-04T14:58:21,432 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:21,433 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-04T14:58:21,433 ^~ 2022-12-04T14:58:22,979 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-04T14:58:22,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-04T14:58:23,258 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-04T14:58:23,260 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-04T14:58:23,401 In file included from vendor/easel/esl_hmm.c:9: 2022-12-04T14:58:23,402 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-04T14:58:23,402 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:23,403 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T14:58:23,403 ^ 2022-12-04T14:58:23,404 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T14:58:23,404 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T14:58:23,405 ^~~~~~~ 2022-12-04T14:58:23,405 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:58:23,406 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T14:58:23,406 ^~~ 2022-12-04T14:58:23,407 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T14:58:23,407 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T14:58:23,408 ^~~~~~~ 2022-12-04T14:58:24,040 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-04T14:58:24,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-04T14:58:24,329 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-04T14:58:24,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-04T14:58:24,939 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-04T14:58:24,941 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-04T14:58:25,244 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-04T14:58:25,246 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-04T14:58:25,355 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-04T14:58:25,357 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-04T14:58:25,935 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-04T14:58:25,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-04T14:58:26,203 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-04T14:58:26,205 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-04T14:58:26,394 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-04T14:58:26,395 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:26,396 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-04T14:58:26,396 ^~ 2022-12-04T14:58:26,427 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-04T14:58:26,431 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-04T14:58:27,860 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-04T14:58:27,862 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-04T14:58:27,996 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-04T14:58:27,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-04T14:58:28,114 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-04T14:58:28,116 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-04T14:58:28,475 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-04T14:58:28,477 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-04T14:58:28,983 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-04T14:58:28,985 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-04T14:58:29,183 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-04T14:58:29,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-04T14:58:29,287 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-04T14:58:29,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-04T14:58:29,610 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-04T14:58:29,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-04T14:58:29,975 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-04T14:58:29,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-04T14:58:30,105 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-04T14:58:30,108 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-04T14:58:30,201 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-04T14:58:30,202 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-04T14:58:30,344 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-04T14:58:30,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-04T14:58:30,405 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-04T14:58:30,407 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-04T14:58:30,799 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-04T14:58:30,800 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-04T14:58:30,800 for (i = 0; i < a; i++) 2022-12-04T14:58:30,801 ^ 2022-12-04T14:58:31,293 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-04T14:58:31,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-04T14:58:32,365 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-04T14:58:32,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-04T14:58:32,458 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-04T14:58:32,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-04T14:58:33,049 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-04T14:58:33,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-04T14:58:33,102 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-04T14:58:33,105 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-04T14:58:33,283 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-04T14:58:33,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-04T14:58:33,875 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-04T14:58:33,877 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-04T14:58:34,217 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-04T14:58:34,218 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,219 for (h = 0; h < kh->hashsize; h++) 2022-12-04T14:58:34,219 ^ 2022-12-04T14:58:34,220 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-04T14:58:34,221 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,221 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T14:58:34,222 ^ 2022-12-04T14:58:34,222 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-04T14:58:34,223 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,223 for (h = 0; h < kh->hashsize; h++) 2022-12-04T14:58:34,224 ^ 2022-12-04T14:58:34,227 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-04T14:58:34,228 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,229 if (kh->nkeys > 3*kh->hashsize) 2022-12-04T14:58:34,230 ^ 2022-12-04T14:58:34,232 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-04T14:58:34,233 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,234 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T14:58:34,234 ^ 2022-12-04T14:58:34,238 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-04T14:58:34,239 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:34,239 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T14:58:34,240 ^ 2022-12-04T14:58:34,842 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-04T14:58:34,844 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-04T14:58:35,367 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-04T14:58:35,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-04T14:58:35,588 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-04T14:58:35,589 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-04T14:58:35,688 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-04T14:58:35,691 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-04T14:58:35,707 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-04T14:58:35,710 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-04T14:58:36,435 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-04T14:58:36,437 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-04T14:58:36,823 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-04T14:58:36,825 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-04T14:58:36,842 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-04T14:58:36,843 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:36,844 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-04T14:58:36,844 ^~ 2022-12-04T14:58:37,046 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-04T14:58:37,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-04T14:58:37,374 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-04T14:58:37,376 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-04T14:58:38,427 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-04T14:58:38,430 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-04T14:58:38,633 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-04T14:58:38,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-04T14:58:38,846 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-04T14:58:38,847 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:38,847 int flags; 2022-12-04T14:58:38,848 ^~~~~ 2022-12-04T14:58:40,373 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-04T14:58:40,374 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:40,375 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-04T14:58:40,376 ^ 2022-12-04T14:58:40,377 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-04T14:58:40,377 char *p; 2022-12-04T14:58:40,378 ^ 2022-12-04T14:58:41,124 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-04T14:58:41,126 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-04T14:58:41,197 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-04T14:58:41,199 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-04T14:58:42,087 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-04T14:58:42,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-04T14:58:42,315 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-04T14:58:42,316 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-04T14:58:42,634 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-04T14:58:42,636 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-04T14:58:42,759 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-04T14:58:42,761 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-04T14:58:42,924 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-04T14:58:42,926 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-04T14:58:43,081 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-04T14:58:43,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-04T14:58:43,279 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-04T14:58:43,280 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:58:43,280 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-04T14:58:43,281 ^~~~~~~~~~~~~~~~ 2022-12-04T14:58:43,331 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-04T14:58:43,332 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:43,332 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-04T14:58:43,333 ~~~~^~~~~~~ 2022-12-04T14:58:43,551 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-04T14:58:43,553 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-04T14:58:43,669 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-04T14:58:43,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-04T14:58:44,153 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-04T14:58:44,154 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-04T14:58:44,832 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-04T14:58:44,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-04T14:58:45,376 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-04T14:58:45,378 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-04T14:58:46,222 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-04T14:58:46,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-04T14:58:46,397 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-04T14:58:46,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-04T14:58:46,619 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-04T14:58:46,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-04T14:58:46,925 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-04T14:58:46,927 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:46,928 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-04T14:58:46,928 ^ 2022-12-04T14:58:47,199 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-04T14:58:47,201 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-04T14:58:47,545 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-04T14:58:47,547 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:58:47,548 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-04T14:58:47,549 ^~ 2022-12-04T14:58:48,404 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-04T14:58:48,406 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-04T14:58:49,752 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-04T14:58:49,754 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-04T14:58:50,087 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-04T14:58:50,089 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-04T14:58:50,269 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-04T14:58:50,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-04T14:58:50,281 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-04T14:58:50,283 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T14:58:50,283 for (pos = 0; pos < sq->n; pos++) 2022-12-04T14:58:50,284 ^ 2022-12-04T14:58:50,286 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T14:58:50,286 for (pos = 1; pos <= sq->n; pos++) 2022-12-04T14:58:50,287 ^~ 2022-12-04T14:58:50,520 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-04T14:58:50,521 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-04T14:58:50,522 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:50,523 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:58:50,523 ^ 2022-12-04T14:58:50,524 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:58:50,524 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T14:58:50,525 ^~~~~~~ 2022-12-04T14:58:50,525 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:58:50,526 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:58:50,526 ^~~ 2022-12-04T14:58:50,527 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:58:50,527 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T14:58:50,528 ^~~~~~~ 2022-12-04T14:58:50,528 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:50,529 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:58:50,529 ^ 2022-12-04T14:58:50,530 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:58:50,530 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T14:58:50,530 ^~~~~~~ 2022-12-04T14:58:50,531 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:58:50,531 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:58:50,532 ^~~ 2022-12-04T14:58:50,532 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:58:50,533 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T14:58:50,533 ^~~~~~~ 2022-12-04T14:58:51,008 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-04T14:58:51,009 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-04T14:58:51,032 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-04T14:58:51,032 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:51,033 return status; 2022-12-04T14:58:51,033 ^~~~~~ 2022-12-04T14:58:52,021 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-04T14:58:52,024 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-04T14:58:52,754 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-04T14:58:52,756 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-04T14:58:53,571 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-04T14:58:53,572 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:53,572 if (opt_fx) *opt_fx = fx; 2022-12-04T14:58:53,573 ~~~~~~~~^~~~ 2022-12-04T14:58:53,573 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:53,574 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-04T14:58:53,574 ~~^~~ 2022-12-04T14:58:53,575 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-04T14:58:53,575 double ax,bx,cx; 2022-12-04T14:58:53,576 ^~ 2022-12-04T14:58:53,576 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T14:58:53,577 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-04T14:58:53,577 ~^~~~~~~~~~~~~ 2022-12-04T14:58:53,578 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-04T14:58:53,578 double ax,bx,cx; 2022-12-04T14:58:53,578 ^~ 2022-12-04T14:58:54,721 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-04T14:58:54,723 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-04T14:58:55,787 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-04T14:58:55,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-04T14:58:55,870 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-04T14:58:55,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-04T14:58:56,138 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-04T14:58:56,140 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-04T14:58:56,178 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-04T14:58:56,179 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-04T14:58:56,230 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-04T14:58:56,231 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,232 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-04T14:58:56,232 ^~ 2022-12-04T14:58:56,255 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-04T14:58:56,256 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,257 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-04T14:58:56,257 ^ 2022-12-04T14:58:56,264 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-04T14:58:56,265 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,265 if (n > ns->plen) ns->plen = n; 2022-12-04T14:58:56,266 ^ 2022-12-04T14:58:56,268 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,269 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-04T14:58:56,269 ^ 2022-12-04T14:58:56,270 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-04T14:58:56,271 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,272 if (n > ns->slen) ns->slen = n; 2022-12-04T14:58:56,272 ^ 2022-12-04T14:58:56,275 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,275 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-04T14:58:56,276 ^ 2022-12-04T14:58:56,287 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-04T14:58:56,288 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,288 for (i = 0; i < ns->nprimary; i++) 2022-12-04T14:58:56,289 ^ 2022-12-04T14:58:56,291 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,292 for (i = 0; i < ns->nprimary; i++) 2022-12-04T14:58:56,292 ^ 2022-12-04T14:58:56,294 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,295 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T14:58:56,295 ^ 2022-12-04T14:58:56,297 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,298 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T14:58:56,298 ^ 2022-12-04T14:58:56,307 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-04T14:58:56,308 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,309 for (i = 0; i < ns->nprimary; i++) 2022-12-04T14:58:56,309 ^ 2022-12-04T14:58:56,318 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,319 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T14:58:56,319 ^ 2022-12-04T14:58:56,331 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-04T14:58:56,331 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,332 for (i = 0; i < ns->nprimary; i++) { 2022-12-04T14:58:56,332 ^ 2022-12-04T14:58:56,333 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,334 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T14:58:56,334 ^ 2022-12-04T14:58:56,335 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,336 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-04T14:58:56,336 ^ 2022-12-04T14:58:56,336 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,337 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-04T14:58:56,337 ^ 2022-12-04T14:58:56,338 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:58:56,338 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-04T14:58:56,339 ^ 2022-12-04T14:58:56,391 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-04T14:58:56,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-04T14:58:57,871 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-04T14:58:57,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-04T14:59:00,322 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-04T14:59:00,324 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-04T14:59:00,361 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-04T14:59:00,363 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-04T14:59:00,593 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-04T14:59:00,596 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-04T14:59:00,745 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-04T14:59:00,746 static double stopwatch_getRealTime(void); 2022-12-04T14:59:00,746 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:00,802 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-04T14:59:00,805 creating build/temp.linux-armv7l-cpython-37/build 2022-12-04T14:59:00,806 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-04T14:59:00,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-04T14:59:01,099 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-04T14:59:01,103 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-04T14:59:01,342 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-04T14:59:01,343 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:01,344 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-04T14:59:01,344 ^~ 2022-12-04T14:59:09,935 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-04T14:59:10,457 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-04T14:59:10,465 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-04T14:59:10,466 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-04T14:59:10,467 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-04T14:59:10,468 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-04T14:59:10,469 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-04T14:59:10,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-04T14:59:10,473 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-04T14:59:10,496 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-04T14:59:10,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-04T14:59:10,904 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-04T14:59:10,904 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:10,905 #error "No vector implementation enabled" 2022-12-04T14:59:10,905 ^~~~~ 2022-12-04T14:59:10,906 In file included from vendor/hmmer/src/errors.c:19: 2022-12-04T14:59:10,906 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:10,907 #error "No vector implementation enabled" 2022-12-04T14:59:10,908 ^~~~~ 2022-12-04T14:59:10,909 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,910 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:10,911 ^~~~~~ 2022-12-04T14:59:10,912 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,914 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:10,917 ^~~~~~ 2022-12-04T14:59:10,921 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,923 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:10,924 ^~~~~~ 2022-12-04T14:59:10,925 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,926 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:10,926 ^~~~~~ 2022-12-04T14:59:10,926 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,927 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:10,927 ^~~~~~ 2022-12-04T14:59:10,928 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,931 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:10,932 ^~~~~~ 2022-12-04T14:59:10,933 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,934 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:10,934 ^~~~~~ 2022-12-04T14:59:10,935 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:10,936 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:10,937 ^~~~~~ 2022-12-04T14:59:10,938 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,949 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:10,950 ^~~~~~~~~~~ 2022-12-04T14:59:10,951 P7_PROFILE 2022-12-04T14:59:10,952 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,953 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:10,953 ^~~~~~~~~~~ 2022-12-04T14:59:10,954 P7_PROFILE 2022-12-04T14:59:10,955 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,956 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:10,956 ^~~~~~~~~~~ 2022-12-04T14:59:10,957 P7_PROFILE 2022-12-04T14:59:10,958 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,968 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:10,970 ^~~~~~~~~~~ 2022-12-04T14:59:10,971 P7_PROFILE 2022-12-04T14:59:10,971 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,972 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:10,972 ^~~~~~~~~~~ 2022-12-04T14:59:10,973 P7_PROFILE 2022-12-04T14:59:10,974 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,975 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:10,975 ^~~~~~~~~~~ 2022-12-04T14:59:10,976 P7_PROFILE 2022-12-04T14:59:10,977 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,978 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:10,988 ^~~~~~~~~~~ 2022-12-04T14:59:10,989 P7_PROFILE 2022-12-04T14:59:10,989 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,990 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:10,990 ^~~~~~~~~~~ 2022-12-04T14:59:10,991 P7_PROFILE 2022-12-04T14:59:10,992 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:10,993 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:10,994 ^~~~~~~~~~~ 2022-12-04T14:59:10,995 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:10,996 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:10,996 ^~~~~~~~~~~ 2022-12-04T14:59:10,997 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:10,997 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,018 ^~~~~~~~~~~ 2022-12-04T14:59:11,019 P7_PROFILE 2022-12-04T14:59:11,019 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,020 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,021 ^~~~~~~~~~~ 2022-12-04T14:59:11,021 P7_PROFILE 2022-12-04T14:59:11,022 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,022 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,023 ^~~~~~~~~~~ 2022-12-04T14:59:11,023 P7_PROFILE 2022-12-04T14:59:11,024 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,025 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,026 ^~~~~~~~~~~ 2022-12-04T14:59:11,026 P7_PROFILE 2022-12-04T14:59:11,026 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,027 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,028 ^~~~~~~~~~~ 2022-12-04T14:59:11,030 P7_PROFILE 2022-12-04T14:59:11,031 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,032 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,033 ^~~~~~~~~~~ 2022-12-04T14:59:11,033 P7_PROFILE 2022-12-04T14:59:11,034 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,035 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,035 ^~~~~~ 2022-12-04T14:59:11,036 P7_GMX 2022-12-04T14:59:11,038 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,045 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,046 ^~~~~~ 2022-12-04T14:59:11,047 P7_GMX 2022-12-04T14:59:11,047 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,048 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,049 ^~~~~~ 2022-12-04T14:59:11,050 P7_GMX 2022-12-04T14:59:11,050 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,051 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,052 ^~~~~~ 2022-12-04T14:59:11,052 P7_GMX 2022-12-04T14:59:11,053 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,053 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,054 ^~~~~~ 2022-12-04T14:59:11,055 P7_GMX 2022-12-04T14:59:11,055 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,056 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,057 ^~~~~~ 2022-12-04T14:59:11,071 P7_GMX 2022-12-04T14:59:11,072 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,072 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,072 ^~~~~~ 2022-12-04T14:59:11,073 P7_GMX 2022-12-04T14:59:11,074 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,074 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,075 ^~~~~~ 2022-12-04T14:59:11,075 P7_GMX 2022-12-04T14:59:11,076 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,076 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,077 ^~~~~~~~~~~ 2022-12-04T14:59:11,077 P7_PROFILE 2022-12-04T14:59:11,078 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,078 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,079 ^~~~~~~~~~~ 2022-12-04T14:59:11,079 P7_PROFILE 2022-12-04T14:59:11,080 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,080 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,081 ^~~~~~~~~~~ 2022-12-04T14:59:11,081 P7_PROFILE 2022-12-04T14:59:11,082 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,082 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,083 ^~~~~~~~~~~ 2022-12-04T14:59:11,083 P7_PROFILE 2022-12-04T14:59:11,084 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,084 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,084 ^~~~~~~~~~~ 2022-12-04T14:59:11,085 P7_PROFILE 2022-12-04T14:59:11,085 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,085 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,086 ^~~~~~~~~~~ 2022-12-04T14:59:11,086 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,087 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,087 ^~~~~~~~~~~ 2022-12-04T14:59:11,088 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,088 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,089 ^~~~~~~~~~~ 2022-12-04T14:59:11,089 P7_PROFILE 2022-12-04T14:59:11,089 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,090 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,090 ^~~~~~~~~~~ 2022-12-04T14:59:11,091 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,091 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,092 ^~~~~~~~~~~ 2022-12-04T14:59:11,092 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,093 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,093 ^~~~~~~~~~~ 2022-12-04T14:59:11,093 P7_PROFILE 2022-12-04T14:59:11,094 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,094 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,095 ^~~~~~~~~~~ 2022-12-04T14:59:11,095 P7_PROFILE 2022-12-04T14:59:11,096 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,096 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,097 ^~~~~~~~~~~ 2022-12-04T14:59:11,097 P7_PROFILE 2022-12-04T14:59:11,097 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,098 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,099 ^~~~~~~~~~~ 2022-12-04T14:59:11,099 P7_PROFILE 2022-12-04T14:59:11,100 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-04T14:59:11,100 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:11,101 #error "No vector implementation enabled" 2022-12-04T14:59:11,102 ^~~~~ 2022-12-04T14:59:11,102 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,103 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:11,103 ^~~~~~ 2022-12-04T14:59:11,104 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,105 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:11,105 ^~~~~~ 2022-12-04T14:59:11,105 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,106 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:11,107 ^~~~~~ 2022-12-04T14:59:11,107 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,108 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:11,109 ^~~~~~ 2022-12-04T14:59:11,109 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,110 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,110 ^~~~~~~~~~~ 2022-12-04T14:59:11,111 P7_PROFILE 2022-12-04T14:59:11,112 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,112 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,113 ^~~~~~~~~~~ 2022-12-04T14:59:11,113 P7_PROFILE 2022-12-04T14:59:11,114 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,114 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:11,115 ^~~~~~~~~~~ 2022-12-04T14:59:11,115 P7_PROFILE 2022-12-04T14:59:11,116 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,116 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:11,117 ^~~~~~~~~~~ 2022-12-04T14:59:11,117 P7_PROFILE 2022-12-04T14:59:11,118 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,118 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:11,119 ^~~~~~~~~~~ 2022-12-04T14:59:11,119 P7_PROFILE 2022-12-04T14:59:11,120 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,121 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:11,122 ^~~~~~~~~~~ 2022-12-04T14:59:11,123 P7_PROFILE 2022-12-04T14:59:11,124 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,125 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:11,126 ^~~~~~~~~~~ 2022-12-04T14:59:11,126 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-04T14:59:11,127 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-04T14:59:11,127 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,128 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,128 ^~~~~~~~~~~ 2022-12-04T14:59:11,129 P7_PROFILE 2022-12-04T14:59:11,130 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,130 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,131 ^~~~~~~~~~~ 2022-12-04T14:59:11,132 P7_PROFILE 2022-12-04T14:59:11,132 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,133 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,134 ^~~~~~~~~~~ 2022-12-04T14:59:11,134 P7_PROFILE 2022-12-04T14:59:11,134 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,135 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,136 ^~~~~~ 2022-12-04T14:59:11,136 P7_GMX 2022-12-04T14:59:11,137 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,137 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,138 ^~~~~~ 2022-12-04T14:59:11,138 P7_GMX 2022-12-04T14:59:11,139 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,140 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,141 ^~~~~~ 2022-12-04T14:59:11,141 P7_GMX 2022-12-04T14:59:11,142 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,143 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,143 ^~~~~~ 2022-12-04T14:59:11,144 P7_GMX 2022-12-04T14:59:11,144 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,145 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,145 ^~~~~~~~~~~ 2022-12-04T14:59:11,146 P7_PROFILE 2022-12-04T14:59:11,146 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,146 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,147 ^~~~~~~~~~~ 2022-12-04T14:59:11,147 P7_PROFILE 2022-12-04T14:59:11,147 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,148 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,149 ^~~~~~~~~~~ 2022-12-04T14:59:11,150 P7_PROFILE 2022-12-04T14:59:11,150 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,151 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,151 ^~~~~~~~~~~ 2022-12-04T14:59:11,151 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,152 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,153 ^~~~~~~~~~~ 2022-12-04T14:59:11,153 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,154 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,154 ^~~~~~~~~~~ 2022-12-04T14:59:11,155 P7_PROFILE 2022-12-04T14:59:11,155 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,155 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,156 ^~~~~~~~~~~ 2022-12-04T14:59:11,157 P7_PROFILE 2022-12-04T14:59:11,157 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-04T14:59:11,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-04T14:59:11,158 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,159 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,159 ^~~~~~~~~~~ 2022-12-04T14:59:11,159 P7_PROFILE 2022-12-04T14:59:11,160 In file included from vendor/hmmer/src/build.c:32: 2022-12-04T14:59:11,160 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:11,161 #error "No vector implementation enabled" 2022-12-04T14:59:11,161 ^~~~~ 2022-12-04T14:59:11,162 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,162 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:11,163 ^~~~~~ 2022-12-04T14:59:11,163 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,164 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:11,165 ^~~~~~ 2022-12-04T14:59:11,165 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,166 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:11,166 ^~~~~~ 2022-12-04T14:59:11,167 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,167 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:11,167 ^~~~~~ 2022-12-04T14:59:11,168 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,168 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:11,169 ^~~~~~~~~~~ 2022-12-04T14:59:11,169 P7_PROFILE 2022-12-04T14:59:11,169 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,170 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:11,170 ^~~~~~~~~~~ 2022-12-04T14:59:11,171 P7_PROFILE 2022-12-04T14:59:11,171 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,171 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:11,172 ^~~~~~~~~~~ 2022-12-04T14:59:11,173 P7_PROFILE 2022-12-04T14:59:11,173 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,174 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:11,174 ^~~~~~~~~~~ 2022-12-04T14:59:11,175 P7_PROFILE 2022-12-04T14:59:11,175 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,175 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:11,176 ^~~~~~~~~~~ 2022-12-04T14:59:11,176 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,177 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,177 ^~~~~~~~~~~ 2022-12-04T14:59:11,177 P7_PROFILE 2022-12-04T14:59:11,178 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,178 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,178 ^~~~~~~~~~~ 2022-12-04T14:59:11,179 P7_PROFILE 2022-12-04T14:59:11,179 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,179 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,180 ^~~~~~~~~~~ 2022-12-04T14:59:11,180 P7_PROFILE 2022-12-04T14:59:11,181 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,181 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,182 ^~~~~~ 2022-12-04T14:59:11,182 P7_GMX 2022-12-04T14:59:11,182 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,183 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,183 ^~~~~~ 2022-12-04T14:59:11,183 P7_GMX 2022-12-04T14:59:11,184 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,184 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,184 ^~~~~~ 2022-12-04T14:59:11,185 P7_GMX 2022-12-04T14:59:11,185 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,185 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,186 ^~~~~~ 2022-12-04T14:59:11,186 P7_GMX 2022-12-04T14:59:11,187 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,187 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,187 ^~~~~~~~~~~ 2022-12-04T14:59:11,188 P7_PROFILE 2022-12-04T14:59:11,188 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,189 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,189 ^~~~~~~~~~~ 2022-12-04T14:59:11,190 P7_PROFILE 2022-12-04T14:59:11,190 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,191 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,191 ^~~~~~~~~~~ 2022-12-04T14:59:11,192 P7_PROFILE 2022-12-04T14:59:11,192 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,193 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,193 ^~~~~~~~~~~ 2022-12-04T14:59:11,194 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,194 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,195 ^~~~~~~~~~~ 2022-12-04T14:59:11,195 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,195 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,196 ^~~~~~~~~~~ 2022-12-04T14:59:11,196 P7_PROFILE 2022-12-04T14:59:11,197 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,197 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,198 ^~~~~~~~~~~ 2022-12-04T14:59:11,198 P7_PROFILE 2022-12-04T14:59:11,199 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,199 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,200 ^~~~~~~~~~~ 2022-12-04T14:59:11,200 P7_PROFILE 2022-12-04T14:59:11,200 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-04T14:59:11,201 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-04T14:59:11,247 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-04T14:59:11,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-04T14:59:11,278 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-04T14:59:11,281 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-04T14:59:11,399 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-04T14:59:11,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-04T14:59:11,485 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-04T14:59:11,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-04T14:59:11,530 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-04T14:59:11,531 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:11,531 #error "No vector implementation enabled" 2022-12-04T14:59:11,532 ^~~~~ 2022-12-04T14:59:11,536 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,536 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:11,537 ^~~~~~ 2022-12-04T14:59:11,538 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,538 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:11,539 ^~~~~~ 2022-12-04T14:59:11,540 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,540 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:11,541 ^~~~~~ 2022-12-04T14:59:11,542 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,542 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:11,543 ^~~~~~ 2022-12-04T14:59:11,550 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,551 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:11,551 ^~~~~~~~~~~ 2022-12-04T14:59:11,552 P7_PROFILE 2022-12-04T14:59:11,556 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,557 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:11,557 ^~~~~~~~~~~ 2022-12-04T14:59:11,557 P7_PROFILE 2022-12-04T14:59:11,561 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,562 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:11,562 ^~~~~~~~~~~ 2022-12-04T14:59:11,563 P7_PROFILE 2022-12-04T14:59:11,567 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,567 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:11,568 ^~~~~~~~~~~ 2022-12-04T14:59:11,568 P7_PROFILE 2022-12-04T14:59:11,573 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,574 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:11,574 ^~~~~~~~~~~ 2022-12-04T14:59:11,581 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,581 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,582 ^~~~~~~~~~~ 2022-12-04T14:59:11,582 P7_PROFILE 2022-12-04T14:59:11,586 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,586 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,587 ^~~~~~~~~~~ 2022-12-04T14:59:11,587 P7_PROFILE 2022-12-04T14:59:11,592 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,593 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,593 ^~~~~~~~~~~ 2022-12-04T14:59:11,593 P7_PROFILE 2022-12-04T14:59:11,597 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,598 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,598 ^~~~~~ 2022-12-04T14:59:11,599 P7_GMX 2022-12-04T14:59:11,603 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,603 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,604 ^~~~~~ 2022-12-04T14:59:11,604 P7_GMX 2022-12-04T14:59:11,608 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,609 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,609 ^~~~~~ 2022-12-04T14:59:11,610 P7_GMX 2022-12-04T14:59:11,613 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,614 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,614 ^~~~~~ 2022-12-04T14:59:11,615 P7_GMX 2022-12-04T14:59:11,618 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-04T14:59:11,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-04T14:59:11,621 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,622 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,623 ^~~~~~~~~~~ 2022-12-04T14:59:11,623 P7_PROFILE 2022-12-04T14:59:11,625 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,625 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,626 ^~~~~~~~~~~ 2022-12-04T14:59:11,627 P7_PROFILE 2022-12-04T14:59:11,635 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,635 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,636 ^~~~~~~~~~~ 2022-12-04T14:59:11,636 P7_PROFILE 2022-12-04T14:59:11,649 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,649 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,650 ^~~~~~~~~~~ 2022-12-04T14:59:11,651 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,651 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,652 ^~~~~~~~~~~ 2022-12-04T14:59:11,654 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,654 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,655 ^~~~~~~~~~~ 2022-12-04T14:59:11,655 P7_PROFILE 2022-12-04T14:59:11,657 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,658 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,659 ^~~~~~~~~~~ 2022-12-04T14:59:11,659 P7_PROFILE 2022-12-04T14:59:11,667 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,668 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,668 ^~~~~~~~~~~ 2022-12-04T14:59:11,669 P7_PROFILE 2022-12-04T14:59:11,719 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-04T14:59:11,721 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-04T14:59:11,795 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-04T14:59:11,796 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:11,797 #error "No vector implementation enabled" 2022-12-04T14:59:11,797 ^~~~~ 2022-12-04T14:59:11,798 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,798 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:11,799 ^~~~~~ 2022-12-04T14:59:11,799 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,800 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:11,800 ^~~~~~ 2022-12-04T14:59:11,800 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,801 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:11,802 ^~~~~~ 2022-12-04T14:59:11,802 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,803 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:11,803 ^~~~~~ 2022-12-04T14:59:11,804 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,805 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:11,805 ^~~~~~~~~~~ 2022-12-04T14:59:11,806 P7_PROFILE 2022-12-04T14:59:11,812 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,812 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:11,813 ^~~~~~~~~~~ 2022-12-04T14:59:11,813 P7_PROFILE 2022-12-04T14:59:11,813 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,814 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:11,814 ^~~~~~~~~~~ 2022-12-04T14:59:11,814 P7_PROFILE 2022-12-04T14:59:11,818 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,819 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:11,819 ^~~~~~~~~~~ 2022-12-04T14:59:11,820 P7_PROFILE 2022-12-04T14:59:11,824 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,824 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:11,825 ^~~~~~~~~~~ 2022-12-04T14:59:11,831 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,832 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,832 ^~~~~~~~~~~ 2022-12-04T14:59:11,833 P7_PROFILE 2022-12-04T14:59:11,837 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,838 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,838 ^~~~~~~~~~~ 2022-12-04T14:59:11,839 P7_PROFILE 2022-12-04T14:59:11,845 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,845 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,846 ^~~~~~~~~~~ 2022-12-04T14:59:11,846 P7_PROFILE 2022-12-04T14:59:11,851 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,852 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,852 ^~~~~~ 2022-12-04T14:59:11,853 P7_GMX 2022-12-04T14:59:11,858 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,858 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,859 ^~~~~~ 2022-12-04T14:59:11,860 P7_GMX 2022-12-04T14:59:11,865 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,866 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,866 ^~~~~~ 2022-12-04T14:59:11,867 P7_GMX 2022-12-04T14:59:11,872 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,872 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,873 ^~~~~~ 2022-12-04T14:59:11,874 P7_GMX 2022-12-04T14:59:11,881 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,882 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:11,882 ^~~~~~~~~~~ 2022-12-04T14:59:11,883 P7_PROFILE 2022-12-04T14:59:11,888 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,888 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:11,889 ^~~~~~~~~~~ 2022-12-04T14:59:11,889 P7_PROFILE 2022-12-04T14:59:11,895 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,896 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:11,896 ^~~~~~~~~~~ 2022-12-04T14:59:11,897 P7_PROFILE 2022-12-04T14:59:11,899 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,899 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:11,900 ^~~~~~~~~~~ 2022-12-04T14:59:11,901 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,902 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:11,902 ^~~~~~~~~~~ 2022-12-04T14:59:11,908 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,908 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:11,909 ^~~~~~~~~~~ 2022-12-04T14:59:11,909 P7_PROFILE 2022-12-04T14:59:11,914 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,915 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:11,915 ^~~~~~~~~~~ 2022-12-04T14:59:11,916 P7_PROFILE 2022-12-04T14:59:11,926 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,927 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:11,928 ^~~~~~~~~~~ 2022-12-04T14:59:11,928 P7_PROFILE 2022-12-04T14:59:11,940 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-04T14:59:11,941 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:11,941 #error "No vector implementation enabled" 2022-12-04T14:59:11,942 ^~~~~ 2022-12-04T14:59:11,943 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,943 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:11,944 ^~~~~~ 2022-12-04T14:59:11,945 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,945 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:11,946 ^~~~~~ 2022-12-04T14:59:11,947 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,947 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:11,948 ^~~~~~ 2022-12-04T14:59:11,949 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:11,950 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:11,951 ^~~~~~ 2022-12-04T14:59:11,952 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,952 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:11,953 ^~~~~~~~~~~ 2022-12-04T14:59:11,954 P7_PROFILE 2022-12-04T14:59:11,954 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,955 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:11,956 ^~~~~~~~~~~ 2022-12-04T14:59:11,957 P7_PROFILE 2022-12-04T14:59:11,957 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,975 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:11,976 ^~~~~~~~~~~ 2022-12-04T14:59:11,977 P7_PROFILE 2022-12-04T14:59:11,978 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,979 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:11,980 ^~~~~~~~~~~ 2022-12-04T14:59:11,980 P7_PROFILE 2022-12-04T14:59:11,981 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:11,982 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:11,983 ^~~~~~~~~~~ 2022-12-04T14:59:11,983 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,984 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:11,985 ^~~~~~~~~~~ 2022-12-04T14:59:11,986 P7_PROFILE 2022-12-04T14:59:11,987 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,988 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:11,995 ^~~~~~~~~~~ 2022-12-04T14:59:11,995 P7_PROFILE 2022-12-04T14:59:11,996 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:11,996 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,997 ^~~~~~~~~~~ 2022-12-04T14:59:11,997 P7_PROFILE 2022-12-04T14:59:11,998 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:11,999 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:11,999 ^~~~~~ 2022-12-04T14:59:12,000 P7_GMX 2022-12-04T14:59:12,000 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,001 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,002 ^~~~~~ 2022-12-04T14:59:12,002 P7_GMX 2022-12-04T14:59:12,003 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,004 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,005 ^~~~~~ 2022-12-04T14:59:12,005 P7_GMX 2022-12-04T14:59:12,006 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,007 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,036 ^~~~~~ 2022-12-04T14:59:12,037 P7_GMX 2022-12-04T14:59:12,042 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,043 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,044 ^~~~~~~~~~~ 2022-12-04T14:59:12,044 P7_PROFILE 2022-12-04T14:59:12,044 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,045 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,045 ^~~~~~~~~~~ 2022-12-04T14:59:12,045 P7_PROFILE 2022-12-04T14:59:12,046 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,046 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,047 ^~~~~~~~~~~ 2022-12-04T14:59:12,047 P7_PROFILE 2022-12-04T14:59:12,047 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,048 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,056 ^~~~~~~~~~~ 2022-12-04T14:59:12,057 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,057 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,058 ^~~~~~~~~~~ 2022-12-04T14:59:12,058 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,059 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,060 ^~~~~~~~~~~ 2022-12-04T14:59:12,060 P7_PROFILE 2022-12-04T14:59:12,061 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,061 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,063 ^~~~~~~~~~~ 2022-12-04T14:59:12,064 P7_PROFILE 2022-12-04T14:59:12,064 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,065 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,065 ^~~~~~~~~~~ 2022-12-04T14:59:12,066 P7_PROFILE 2022-12-04T14:59:12,066 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-04T14:59:12,066 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-04T14:59:12,067 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-04T14:59:12,067 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-04T14:59:12,091 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-04T14:59:12,092 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:12,092 #error "No vector implementation enabled" 2022-12-04T14:59:12,093 ^~~~~ 2022-12-04T14:59:12,094 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,095 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:12,095 ^~~~~~ 2022-12-04T14:59:12,095 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,096 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:12,096 ^~~~~~ 2022-12-04T14:59:12,097 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,097 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:12,098 ^~~~~~ 2022-12-04T14:59:12,099 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,099 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:12,100 ^~~~~~ 2022-12-04T14:59:12,110 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,111 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:12,111 ^~~~~~~~~~~ 2022-12-04T14:59:12,112 P7_PROFILE 2022-12-04T14:59:12,113 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,114 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:12,114 ^~~~~~~~~~~ 2022-12-04T14:59:12,115 P7_PROFILE 2022-12-04T14:59:12,116 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,117 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:12,117 ^~~~~~~~~~~ 2022-12-04T14:59:12,118 P7_PROFILE 2022-12-04T14:59:12,125 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,125 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:12,126 ^~~~~~~~~~~ 2022-12-04T14:59:12,127 P7_PROFILE 2022-12-04T14:59:12,127 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,128 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:12,130 ^~~~~~~~~~~ 2022-12-04T14:59:12,131 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,131 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:12,131 ^~~~~~~~~~~ 2022-12-04T14:59:12,132 P7_PROFILE 2022-12-04T14:59:12,132 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,133 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:12,134 ^~~~~~~~~~~ 2022-12-04T14:59:12,134 P7_PROFILE 2022-12-04T14:59:12,138 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,139 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,139 ^~~~~~~~~~~ 2022-12-04T14:59:12,140 P7_PROFILE 2022-12-04T14:59:12,141 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,141 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,142 ^~~~~~ 2022-12-04T14:59:12,142 P7_GMX 2022-12-04T14:59:12,148 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,149 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,149 ^~~~~~ 2022-12-04T14:59:12,150 P7_GMX 2022-12-04T14:59:12,150 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,150 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,151 ^~~~~~ 2022-12-04T14:59:12,151 P7_GMX 2022-12-04T14:59:12,152 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,152 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,153 ^~~~~~ 2022-12-04T14:59:12,154 P7_GMX 2022-12-04T14:59:12,163 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,164 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,164 ^~~~~~~~~~~ 2022-12-04T14:59:12,165 P7_PROFILE 2022-12-04T14:59:12,166 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,166 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,166 ^~~~~~~~~~~ 2022-12-04T14:59:12,167 P7_PROFILE 2022-12-04T14:59:12,168 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,168 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,169 ^~~~~~~~~~~ 2022-12-04T14:59:12,169 P7_PROFILE 2022-12-04T14:59:12,170 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,170 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,171 ^~~~~~~~~~~ 2022-12-04T14:59:12,171 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,172 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,172 ^~~~~~~~~~~ 2022-12-04T14:59:12,172 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,173 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,173 ^~~~~~~~~~~ 2022-12-04T14:59:12,174 P7_PROFILE 2022-12-04T14:59:12,174 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,174 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,175 ^~~~~~~~~~~ 2022-12-04T14:59:12,175 P7_PROFILE 2022-12-04T14:59:12,191 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,193 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,195 ^~~~~~~~~~~ 2022-12-04T14:59:12,196 P7_PROFILE 2022-12-04T14:59:12,214 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-04T14:59:12,215 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-04T14:59:12,276 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-04T14:59:12,277 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:12,277 #error "No vector implementation enabled" 2022-12-04T14:59:12,277 ^~~~~ 2022-12-04T14:59:12,282 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,283 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:12,284 ^~~~~~ 2022-12-04T14:59:12,284 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,285 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:12,286 ^~~~~~ 2022-12-04T14:59:12,287 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,287 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:12,288 ^~~~~~ 2022-12-04T14:59:12,289 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,289 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:12,290 ^~~~~~ 2022-12-04T14:59:12,296 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,297 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:12,297 ^~~~~~~~~~~ 2022-12-04T14:59:12,298 P7_PROFILE 2022-12-04T14:59:12,302 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,303 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:12,304 ^~~~~~~~~~~ 2022-12-04T14:59:12,304 P7_PROFILE 2022-12-04T14:59:12,308 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,309 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:12,310 ^~~~~~~~~~~ 2022-12-04T14:59:12,310 P7_PROFILE 2022-12-04T14:59:12,314 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,315 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:12,316 ^~~~~~~~~~~ 2022-12-04T14:59:12,316 P7_PROFILE 2022-12-04T14:59:12,324 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,324 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:12,325 ^~~~~~~~~~~ 2022-12-04T14:59:12,329 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,330 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:12,330 ^~~~~~~~~~~ 2022-12-04T14:59:12,331 P7_PROFILE 2022-12-04T14:59:12,332 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,333 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:12,334 ^~~~~~~~~~~ 2022-12-04T14:59:12,335 P7_PROFILE 2022-12-04T14:59:12,337 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,338 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,338 ^~~~~~~~~~~ 2022-12-04T14:59:12,339 P7_PROFILE 2022-12-04T14:59:12,350 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,351 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,352 ^~~~~~ 2022-12-04T14:59:12,352 P7_GMX 2022-12-04T14:59:12,353 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,354 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,355 ^~~~~~ 2022-12-04T14:59:12,355 P7_GMX 2022-12-04T14:59:12,356 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,357 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,358 ^~~~~~ 2022-12-04T14:59:12,358 P7_GMX 2022-12-04T14:59:12,367 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,368 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,368 ^~~~~~ 2022-12-04T14:59:12,369 P7_GMX 2022-12-04T14:59:12,376 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,377 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,378 ^~~~~~~~~~~ 2022-12-04T14:59:12,378 P7_PROFILE 2022-12-04T14:59:12,380 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,380 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,381 ^~~~~~~~~~~ 2022-12-04T14:59:12,382 P7_PROFILE 2022-12-04T14:59:12,384 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,384 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,385 ^~~~~~~~~~~ 2022-12-04T14:59:12,386 P7_PROFILE 2022-12-04T14:59:12,386 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,387 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,387 ^~~~~~~~~~~ 2022-12-04T14:59:12,388 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,388 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,389 ^~~~~~~~~~~ 2022-12-04T14:59:12,389 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,390 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,391 ^~~~~~~~~~~ 2022-12-04T14:59:12,391 P7_PROFILE 2022-12-04T14:59:12,403 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,404 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,405 ^~~~~~~~~~~ 2022-12-04T14:59:12,405 P7_PROFILE 2022-12-04T14:59:12,422 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,424 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,424 ^~~~~~~~~~~ 2022-12-04T14:59:12,426 P7_PROFILE 2022-12-04T14:59:12,433 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-04T14:59:12,434 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,435 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-04T14:59:12,435 ^~~~~~ 2022-12-04T14:59:12,436 P7_GMX 2022-12-04T14:59:12,437 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,438 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-04T14:59:12,439 ^~~~~~ 2022-12-04T14:59:12,439 P7_GMX 2022-12-04T14:59:12,440 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,441 P7_OPROFILE *om = NULL; 2022-12-04T14:59:12,441 ^~~~~~~~~~~ 2022-12-04T14:59:12,442 P7_PROFILE 2022-12-04T14:59:12,444 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,444 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T14:59:12,445 ^~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,445 p7_profile_Create 2022-12-04T14:59:12,445 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T14:59:12,446 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T14:59:12,446 ^ 2022-12-04T14:59:12,451 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,451 p7_oprofile_Convert(gm, om); 2022-12-04T14:59:12,452 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,453 p7_profile_Compare 2022-12-04T14:59:12,454 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,454 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T14:59:12,455 ^~~~~~~~~~~~~ 2022-12-04T14:59:12,456 p7_gmx_Create 2022-12-04T14:59:12,457 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T14:59:12,457 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T14:59:12,458 ^ 2022-12-04T14:59:12,458 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T14:59:12,459 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T14:59:12,459 ^ 2022-12-04T14:59:12,460 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,460 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-04T14:59:12,461 ^~~~~~~~~~~~~ 2022-12-04T14:59:12,461 p7_gmx_GrowTo 2022-12-04T14:59:12,466 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,467 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-04T14:59:12,467 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,468 p7_ReconfigLength 2022-12-04T14:59:12,470 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,471 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-04T14:59:12,472 ^~~~~~~~~~ 2022-12-04T14:59:12,472 p7_GForward 2022-12-04T14:59:12,473 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,474 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-04T14:59:12,475 ^~~~~~~~~~~ 2022-12-04T14:59:12,476 p7_GBackward 2022-12-04T14:59:12,477 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,478 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-04T14:59:12,478 ^~~~~~~~~~~ 2022-12-04T14:59:12,479 p7_GDecoding 2022-12-04T14:59:12,482 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,483 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-04T14:59:12,484 ^~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,484 p7_GOptimalAccuracy 2022-12-04T14:59:12,486 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,486 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-04T14:59:12,487 ^~~~~~~~~~ 2022-12-04T14:59:12,487 p7_GOATrace 2022-12-04T14:59:12,488 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-04T14:59:12,489 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:12,490 #error "No vector implementation enabled" 2022-12-04T14:59:12,490 ^~~~~ 2022-12-04T14:59:12,492 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,492 p7_omx_Reuse(oxf); 2022-12-04T14:59:12,493 ^~~~~~~~~~~~ 2022-12-04T14:59:12,494 p7_gmx_Reuse 2022-12-04T14:59:12,494 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,495 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:12,496 ^~~~~~ 2022-12-04T14:59:12,497 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,498 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:12,499 ^~~~~~ 2022-12-04T14:59:12,499 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,500 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:12,501 ^~~~~~ 2022-12-04T14:59:12,502 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,502 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:12,503 ^~~~~~ 2022-12-04T14:59:12,503 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,504 p7_omx_Destroy(oxf); 2022-12-04T14:59:12,505 ^~~~~~~~~~~~~~ 2022-12-04T14:59:12,505 p7_gmx_Destroy 2022-12-04T14:59:12,506 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,506 p7_oprofile_Destroy(om); 2022-12-04T14:59:12,507 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,507 p7_profile_Destroy 2022-12-04T14:59:12,512 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,513 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:12,513 ^~~~~~~~~~~ 2022-12-04T14:59:12,514 P7_PROFILE 2022-12-04T14:59:12,515 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,516 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:12,517 ^~~~~~~~~~~ 2022-12-04T14:59:12,517 P7_PROFILE 2022-12-04T14:59:12,518 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,520 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:12,520 ^~~~~~~~~~~ 2022-12-04T14:59:12,521 P7_PROFILE 2022-12-04T14:59:12,522 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,522 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:12,523 ^~~~~~~~~~~ 2022-12-04T14:59:12,523 P7_PROFILE 2022-12-04T14:59:12,526 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,527 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:12,527 ^~~~~~~~~~~ 2022-12-04T14:59:12,531 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,532 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:12,532 ^~~~~~~~~~~ 2022-12-04T14:59:12,533 P7_PROFILE 2022-12-04T14:59:12,534 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,535 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:12,536 ^~~~~~~~~~~ 2022-12-04T14:59:12,536 P7_PROFILE 2022-12-04T14:59:12,538 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,539 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,540 ^~~~~~~~~~~ 2022-12-04T14:59:12,540 P7_PROFILE 2022-12-04T14:59:12,542 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,543 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,543 ^~~~~~ 2022-12-04T14:59:12,544 P7_GMX 2022-12-04T14:59:12,545 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,546 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,546 ^~~~~~ 2022-12-04T14:59:12,547 P7_GMX 2022-12-04T14:59:12,548 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,549 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,550 ^~~~~~ 2022-12-04T14:59:12,550 P7_GMX 2022-12-04T14:59:12,551 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,552 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,552 ^~~~~~ 2022-12-04T14:59:12,552 P7_GMX 2022-12-04T14:59:12,556 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,557 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,558 ^~~~~~~~~~~ 2022-12-04T14:59:12,558 P7_PROFILE 2022-12-04T14:59:12,580 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,581 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,581 ^~~~~~~~~~~ 2022-12-04T14:59:12,582 P7_PROFILE 2022-12-04T14:59:12,584 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,584 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,585 ^~~~~~~~~~~ 2022-12-04T14:59:12,586 P7_PROFILE 2022-12-04T14:59:12,586 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,587 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,587 ^~~~~~~~~~~ 2022-12-04T14:59:12,588 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,589 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,589 ^~~~~~~~~~~ 2022-12-04T14:59:12,590 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,590 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,591 ^~~~~~~~~~~ 2022-12-04T14:59:12,591 P7_PROFILE 2022-12-04T14:59:12,592 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,592 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,593 ^~~~~~~~~~~ 2022-12-04T14:59:12,593 P7_PROFILE 2022-12-04T14:59:12,598 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-04T14:59:12,599 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:12,599 #error "No vector implementation enabled" 2022-12-04T14:59:12,599 ^~~~~ 2022-12-04T14:59:12,601 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,602 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:12,603 ^~~~~~ 2022-12-04T14:59:12,604 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,605 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:12,605 ^~~~~~ 2022-12-04T14:59:12,606 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,607 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:12,607 ^~~~~~ 2022-12-04T14:59:12,608 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,609 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:12,610 ^~~~~~ 2022-12-04T14:59:12,611 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,611 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:12,612 ^~~~~~~~~~~ 2022-12-04T14:59:12,613 P7_PROFILE 2022-12-04T14:59:12,614 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,614 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,615 ^~~~~~~~~~~ 2022-12-04T14:59:12,616 P7_PROFILE 2022-12-04T14:59:12,617 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,617 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:12,618 ^~~~~~~~~~~ 2022-12-04T14:59:12,619 P7_PROFILE 2022-12-04T14:59:12,619 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,620 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:12,620 ^~~~~~~~~~~ 2022-12-04T14:59:12,620 P7_PROFILE 2022-12-04T14:59:12,621 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-04T14:59:12,621 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,622 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:12,622 ^~~~~~~~~~~ 2022-12-04T14:59:12,623 P7_PROFILE 2022-12-04T14:59:12,623 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,624 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:12,624 ^~~~~~~~~~~ 2022-12-04T14:59:12,627 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,628 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-04T14:59:12,629 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,630 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,631 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:12,631 ^~~~~~~~~~~ 2022-12-04T14:59:12,631 P7_PROFILE 2022-12-04T14:59:12,632 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,633 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-04T14:59:12,633 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,634 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,635 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-04T14:59:12,635 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,636 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,637 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-04T14:59:12,637 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,638 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,638 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-04T14:59:12,639 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,640 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,640 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:12,641 ^~~~~~~~~~~ 2022-12-04T14:59:12,641 P7_PROFILE 2022-12-04T14:59:12,642 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,643 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-04T14:59:12,643 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,644 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:12,644 if (ser_size != ptr - (*buf + *n)){ 2022-12-04T14:59:12,645 ^~ 2022-12-04T14:59:12,646 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,646 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,647 ^~~~~~~~~~~ 2022-12-04T14:59:12,647 P7_PROFILE 2022-12-04T14:59:12,648 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-04T14:59:12,649 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,649 ret_obj->envsc = *((float *) &host_32bit); 2022-12-04T14:59:12,649 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,650 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,650 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-04T14:59:12,651 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,652 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,653 ret_obj->dombias = *((float *) &host_32bit); 2022-12-04T14:59:12,654 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,654 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,655 ret_obj->oasc = *((float *) &host_32bit); 2022-12-04T14:59:12,656 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,656 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,657 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-04T14:59:12,658 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,658 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,659 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,659 ^~~~~~ 2022-12-04T14:59:12,659 P7_GMX 2022-12-04T14:59:12,660 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,661 ret_obj->lnP = *((double *) &host_64bit); 2022-12-04T14:59:12,661 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,662 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T14:59:12,662 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-04T14:59:12,662 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,663 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:12,663 if(ptr - (buf + *n) != obj_size){ 2022-12-04T14:59:12,664 ^~ 2022-12-04T14:59:12,664 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,664 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,665 ^~~~~~ 2022-12-04T14:59:12,665 P7_GMX 2022-12-04T14:59:12,666 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,666 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,667 ^~~~~~ 2022-12-04T14:59:12,667 P7_GMX 2022-12-04T14:59:12,668 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,669 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,670 ^~~~~~ 2022-12-04T14:59:12,670 P7_GMX 2022-12-04T14:59:12,670 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,671 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,672 ^~~~~~~~~~~ 2022-12-04T14:59:12,672 P7_PROFILE 2022-12-04T14:59:12,673 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,674 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,678 ^~~~~~~~~~~ 2022-12-04T14:59:12,679 P7_PROFILE 2022-12-04T14:59:12,680 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,680 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,681 ^~~~~~~~~~~ 2022-12-04T14:59:12,681 P7_PROFILE 2022-12-04T14:59:12,681 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,683 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,686 ^~~~~~~~~~~ 2022-12-04T14:59:12,686 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,687 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,687 ^~~~~~~~~~~ 2022-12-04T14:59:12,687 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,688 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,688 ^~~~~~~~~~~ 2022-12-04T14:59:12,689 P7_PROFILE 2022-12-04T14:59:12,689 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-04T14:59:12,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-04T14:59:12,690 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-04T14:59:12,691 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,692 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,692 ^~~~~~~~~~~ 2022-12-04T14:59:12,693 P7_PROFILE 2022-12-04T14:59:12,694 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-04T14:59:12,696 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,697 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,697 ^~~~~~~~~~~ 2022-12-04T14:59:12,698 P7_PROFILE 2022-12-04T14:59:12,759 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-04T14:59:12,761 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-04T14:59:12,779 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-04T14:59:12,780 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:12,780 #error "No vector implementation enabled" 2022-12-04T14:59:12,780 ^~~~~ 2022-12-04T14:59:12,782 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,782 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:12,783 ^~~~~~ 2022-12-04T14:59:12,783 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,784 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:12,784 ^~~~~~ 2022-12-04T14:59:12,785 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,786 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:12,786 ^~~~~~ 2022-12-04T14:59:12,787 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:12,787 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:12,788 ^~~~~~ 2022-12-04T14:59:12,789 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,790 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:12,790 ^~~~~~~~~~~ 2022-12-04T14:59:12,791 P7_PROFILE 2022-12-04T14:59:12,791 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,792 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:12,793 ^~~~~~~~~~~ 2022-12-04T14:59:12,793 P7_PROFILE 2022-12-04T14:59:12,808 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,809 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:12,809 ^~~~~~~~~~~ 2022-12-04T14:59:12,810 P7_PROFILE 2022-12-04T14:59:12,810 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,811 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:12,812 ^~~~~~~~~~~ 2022-12-04T14:59:12,812 P7_PROFILE 2022-12-04T14:59:12,812 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,813 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:12,814 ^~~~~~~~~~~ 2022-12-04T14:59:12,814 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,815 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:12,815 ^~~~~~~~~~~ 2022-12-04T14:59:12,816 P7_PROFILE 2022-12-04T14:59:12,816 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,817 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:12,817 ^~~~~~~~~~~ 2022-12-04T14:59:12,818 P7_PROFILE 2022-12-04T14:59:12,821 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,821 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,822 ^~~~~~~~~~~ 2022-12-04T14:59:12,822 P7_PROFILE 2022-12-04T14:59:12,823 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,823 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,824 ^~~~~~ 2022-12-04T14:59:12,824 P7_GMX 2022-12-04T14:59:12,825 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,825 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,825 ^~~~~~ 2022-12-04T14:59:12,826 P7_GMX 2022-12-04T14:59:12,826 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,827 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,827 ^~~~~~ 2022-12-04T14:59:12,828 P7_GMX 2022-12-04T14:59:12,829 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:12,830 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:12,830 ^~~~~~ 2022-12-04T14:59:12,831 P7_GMX 2022-12-04T14:59:12,831 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,832 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:12,833 ^~~~~~~~~~~ 2022-12-04T14:59:12,834 P7_PROFILE 2022-12-04T14:59:12,835 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,836 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:12,836 ^~~~~~~~~~~ 2022-12-04T14:59:12,837 P7_PROFILE 2022-12-04T14:59:12,839 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,840 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:12,840 ^~~~~~~~~~~ 2022-12-04T14:59:12,841 P7_PROFILE 2022-12-04T14:59:12,842 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,842 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:12,843 ^~~~~~~~~~~ 2022-12-04T14:59:12,844 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,844 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:12,845 ^~~~~~~~~~~ 2022-12-04T14:59:12,846 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,846 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:12,847 ^~~~~~~~~~~ 2022-12-04T14:59:12,847 P7_PROFILE 2022-12-04T14:59:12,847 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,848 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:12,848 ^~~~~~~~~~~ 2022-12-04T14:59:12,849 P7_PROFILE 2022-12-04T14:59:12,855 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,856 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:12,856 ^~~~~~~~~~~ 2022-12-04T14:59:12,857 P7_PROFILE 2022-12-04T14:59:12,857 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-04T14:59:12,858 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:12,859 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-04T14:59:12,859 ^~~~~~~~~~~ 2022-12-04T14:59:12,864 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-04T14:59:12,865 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,865 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-04T14:59:12,866 ^~~~~~~~~~~ 2022-12-04T14:59:12,866 P7_PROFILE 2022-12-04T14:59:12,868 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-04T14:59:12,878 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,879 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T14:59:12,879 ^~~~~~~~~~~ 2022-12-04T14:59:12,880 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T14:59:12,881 if ( size <= 0 ) { \ 2022-12-04T14:59:12,881 ^~~~ 2022-12-04T14:59:12,882 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-04T14:59:12,882 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T14:59:12,883 ^~~~~~~~~~~ 2022-12-04T14:59:12,883 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T14:59:12,884 if ( size <= 0 ) { \ 2022-12-04T14:59:12,884 ^~~~ 2022-12-04T14:59:12,885 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T14:59:12,885 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T14:59:12,886 ^ 2022-12-04T14:59:12,886 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T14:59:12,887 if ( size <= 0 ) { \ 2022-12-04T14:59:12,887 ^~~~ 2022-12-04T14:59:12,888 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T14:59:12,899 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T14:59:12,899 ^ 2022-12-04T14:59:12,900 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T14:59:12,900 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-04T14:59:12,901 ^~~~ 2022-12-04T14:59:12,901 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T14:59:12,902 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T14:59:12,902 ^ 2022-12-04T14:59:12,903 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T14:59:12,904 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-04T14:59:12,905 ^~~~ 2022-12-04T14:59:12,906 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,906 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-04T14:59:12,907 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,907 p7_profile_Reuse 2022-12-04T14:59:12,908 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,913 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-04T14:59:12,913 ^~~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,914 p7_profile_Reuse 2022-12-04T14:59:12,914 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,915 if (om) p7_oprofile_Destroy(om); 2022-12-04T14:59:12,915 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,916 p7_profile_Destroy 2022-12-04T14:59:12,916 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-04T14:59:12,916 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,917 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T14:59:12,917 ^~~~~~~~~~~ 2022-12-04T14:59:12,918 P7_PROFILE 2022-12-04T14:59:12,920 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-04T14:59:12,921 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T14:59:12,921 ^ 2022-12-04T14:59:12,921 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:12,922 for (i = 0; i < cache->n; i++) 2022-12-04T14:59:12,922 ^ 2022-12-04T14:59:12,923 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-04T14:59:12,923 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-04T14:59:12,923 ^~~~~~~~~~~~~~~~~~ 2022-12-04T14:59:12,924 p7_profile_Sizeof 2022-12-04T14:59:12,924 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-04T14:59:12,924 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:12,925 P7_OPROFILE *om; 2022-12-04T14:59:12,925 ^~~~~~~~~~~ 2022-12-04T14:59:12,925 P7_PROFILE 2022-12-04T14:59:12,926 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:12,926 for (i = 0; i < cache->n; i++) 2022-12-04T14:59:12,926 ^ 2022-12-04T14:59:12,927 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-04T14:59:12,927 if (om->name) free(om->name); 2022-12-04T14:59:12,927 ^~ 2022-12-04T14:59:12,928 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-04T14:59:12,928 if (om->name) free(om->name); 2022-12-04T14:59:12,928 ^~ 2022-12-04T14:59:12,929 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-04T14:59:12,929 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-04T14:59:12,930 ^~ 2022-12-04T14:59:12,930 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-04T14:59:12,931 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:12,931 for (i = 0; i < cache->n; i++) 2022-12-04T14:59:12,931 ^ 2022-12-04T14:59:13,156 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-04T14:59:13,157 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:13,157 #error "No vector implementation enabled" 2022-12-04T14:59:13,158 ^~~~~ 2022-12-04T14:59:13,159 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,159 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:13,160 ^~~~~~ 2022-12-04T14:59:13,160 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,161 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:13,161 ^~~~~~ 2022-12-04T14:59:13,162 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,162 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:13,163 ^~~~~~ 2022-12-04T14:59:13,164 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,164 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:13,165 ^~~~~~ 2022-12-04T14:59:13,166 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-04T14:59:13,167 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:13,167 #error "No vector implementation enabled" 2022-12-04T14:59:13,168 ^~~~~ 2022-12-04T14:59:13,169 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,169 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:13,170 ^~~~~~~~~~~ 2022-12-04T14:59:13,171 P7_PROFILE 2022-12-04T14:59:13,171 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,172 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:13,172 ^~~~~~~~~~~ 2022-12-04T14:59:13,173 P7_PROFILE 2022-12-04T14:59:13,174 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,175 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:13,176 ^~~~~~ 2022-12-04T14:59:13,176 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,177 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:13,178 ^~~~~~ 2022-12-04T14:59:13,179 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,179 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:13,180 ^~~~~~ 2022-12-04T14:59:13,180 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,181 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:13,182 ^~~~~~ 2022-12-04T14:59:13,182 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,183 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:13,183 ^~~~~~~~~~~ 2022-12-04T14:59:13,184 P7_PROFILE 2022-12-04T14:59:13,185 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,186 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:13,186 ^~~~~~~~~~~ 2022-12-04T14:59:13,187 P7_PROFILE 2022-12-04T14:59:13,188 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,188 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:13,189 ^~~~~~~~~~~ 2022-12-04T14:59:13,189 P7_PROFILE 2022-12-04T14:59:13,190 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,191 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:13,191 ^~~~~~~~~~~ 2022-12-04T14:59:13,192 P7_PROFILE 2022-12-04T14:59:13,192 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,193 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:13,193 ^~~~~~~~~~~ 2022-12-04T14:59:13,194 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,194 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:13,195 ^~~~~~~~~~~ 2022-12-04T14:59:13,196 P7_PROFILE 2022-12-04T14:59:13,197 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,197 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:13,198 ^~~~~~~~~~~ 2022-12-04T14:59:13,199 P7_PROFILE 2022-12-04T14:59:13,200 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,201 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:13,201 ^~~~~~~~~~~ 2022-12-04T14:59:13,202 P7_PROFILE 2022-12-04T14:59:13,202 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,203 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:13,204 ^~~~~~~~~~~ 2022-12-04T14:59:13,204 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,205 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:13,206 ^~~~~~~~~~~ 2022-12-04T14:59:13,206 P7_PROFILE 2022-12-04T14:59:13,207 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,209 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:13,209 ^~~~~~~~~~~ 2022-12-04T14:59:13,210 P7_PROFILE 2022-12-04T14:59:13,210 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,211 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,212 ^~~~~~~~~~~ 2022-12-04T14:59:13,213 P7_PROFILE 2022-12-04T14:59:13,213 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,214 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,214 ^~~~~~ 2022-12-04T14:59:13,215 P7_GMX 2022-12-04T14:59:13,216 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,216 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:13,217 ^~~~~~~~~~~ 2022-12-04T14:59:13,217 P7_PROFILE 2022-12-04T14:59:13,218 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,218 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,219 ^~~~~~ 2022-12-04T14:59:13,220 P7_GMX 2022-12-04T14:59:13,221 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,222 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,222 ^~~~~~~~~~~ 2022-12-04T14:59:13,222 P7_PROFILE 2022-12-04T14:59:13,223 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,224 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,224 ^~~~~~ 2022-12-04T14:59:13,225 P7_GMX 2022-12-04T14:59:13,225 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,226 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,227 ^~~~~~ 2022-12-04T14:59:13,227 P7_GMX 2022-12-04T14:59:13,228 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,228 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,229 ^~~~~~ 2022-12-04T14:59:13,230 P7_GMX 2022-12-04T14:59:13,231 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,231 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,232 ^~~~~~ 2022-12-04T14:59:13,232 P7_GMX 2022-12-04T14:59:13,233 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,234 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,234 ^~~~~~ 2022-12-04T14:59:13,235 P7_GMX 2022-12-04T14:59:13,236 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,236 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,237 ^~~~~~ 2022-12-04T14:59:13,237 P7_GMX 2022-12-04T14:59:13,238 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,239 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:13,240 ^~~~~~~~~~~ 2022-12-04T14:59:13,241 P7_PROFILE 2022-12-04T14:59:13,241 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,242 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:13,243 ^~~~~~~~~~~ 2022-12-04T14:59:13,243 P7_PROFILE 2022-12-04T14:59:13,244 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,244 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:13,245 ^~~~~~~~~~~ 2022-12-04T14:59:13,245 P7_PROFILE 2022-12-04T14:59:13,245 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,246 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:13,246 ^~~~~~~~~~~ 2022-12-04T14:59:13,247 P7_PROFILE 2022-12-04T14:59:13,247 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,248 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:13,249 ^~~~~~~~~~~ 2022-12-04T14:59:13,249 P7_PROFILE 2022-12-04T14:59:13,250 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,251 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:13,251 ^~~~~~~~~~~ 2022-12-04T14:59:13,252 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,252 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:13,253 ^~~~~~~~~~~ 2022-12-04T14:59:13,253 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,254 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:13,254 ^~~~~~~~~~~ 2022-12-04T14:59:13,255 P7_PROFILE 2022-12-04T14:59:13,255 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,256 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:13,256 ^~~~~~~~~~~ 2022-12-04T14:59:13,257 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,257 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:13,257 ^~~~~~~~~~~ 2022-12-04T14:59:13,258 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,258 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:13,259 ^~~~~~~~~~~ 2022-12-04T14:59:13,259 P7_PROFILE 2022-12-04T14:59:13,260 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,260 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:13,261 ^~~~~~~~~~~ 2022-12-04T14:59:13,261 P7_PROFILE 2022-12-04T14:59:13,262 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,262 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:13,263 ^~~~~~~~~~~ 2022-12-04T14:59:13,264 P7_PROFILE 2022-12-04T14:59:13,265 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,265 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:13,266 ^~~~~~~~~~~ 2022-12-04T14:59:13,266 P7_PROFILE 2022-12-04T14:59:13,267 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,268 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:13,269 ^~~~~~~~~~~ 2022-12-04T14:59:13,269 P7_PROFILE 2022-12-04T14:59:13,270 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,271 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:13,271 ^~~~~~~~~~~ 2022-12-04T14:59:13,272 P7_PROFILE 2022-12-04T14:59:13,272 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-04T14:59:13,273 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T14:59:13,273 #error "No vector implementation enabled" 2022-12-04T14:59:13,274 ^~~~~ 2022-12-04T14:59:13,274 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,275 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T14:59:13,275 ^~~~~~ 2022-12-04T14:59:13,276 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,276 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T14:59:13,276 ^~~~~~ 2022-12-04T14:59:13,277 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,277 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T14:59:13,278 ^~~~~~ 2022-12-04T14:59:13,278 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T14:59:13,279 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T14:59:13,280 ^~~~~~ 2022-12-04T14:59:13,280 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,281 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T14:59:13,281 ^~~~~~~~~~~ 2022-12-04T14:59:13,282 P7_PROFILE 2022-12-04T14:59:13,283 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,284 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T14:59:13,285 ^~~~~~~~~~~ 2022-12-04T14:59:13,286 P7_PROFILE 2022-12-04T14:59:13,287 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,287 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T14:59:13,288 ^~~~~~~~~~~ 2022-12-04T14:59:13,289 P7_PROFILE 2022-12-04T14:59:13,290 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,290 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T14:59:13,291 ^~~~~~~~~~~ 2022-12-04T14:59:13,292 P7_PROFILE 2022-12-04T14:59:13,292 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,293 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T14:59:13,293 ^~~~~~~~~~~ 2022-12-04T14:59:13,294 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,294 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T14:59:13,295 ^~~~~~~~~~~ 2022-12-04T14:59:13,296 P7_PROFILE 2022-12-04T14:59:13,296 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,297 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T14:59:13,298 ^~~~~~~~~~~ 2022-12-04T14:59:13,299 P7_PROFILE 2022-12-04T14:59:13,299 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,300 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,300 ^~~~~~~~~~~ 2022-12-04T14:59:13,301 P7_PROFILE 2022-12-04T14:59:13,302 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,303 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,304 ^~~~~~ 2022-12-04T14:59:13,304 P7_GMX 2022-12-04T14:59:13,304 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,305 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,305 ^~~~~~ 2022-12-04T14:59:13,306 P7_GMX 2022-12-04T14:59:13,306 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,307 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,308 ^~~~~~ 2022-12-04T14:59:13,308 P7_GMX 2022-12-04T14:59:13,309 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T14:59:13,309 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T14:59:13,310 ^~~~~~ 2022-12-04T14:59:13,311 P7_GMX 2022-12-04T14:59:13,312 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,312 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T14:59:13,313 ^~~~~~~~~~~ 2022-12-04T14:59:13,313 P7_PROFILE 2022-12-04T14:59:13,314 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,314 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T14:59:13,315 ^~~~~~~~~~~ 2022-12-04T14:59:13,315 P7_PROFILE 2022-12-04T14:59:13,317 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,318 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T14:59:13,318 ^~~~~~~~~~~ 2022-12-04T14:59:13,319 P7_PROFILE 2022-12-04T14:59:13,320 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,320 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T14:59:13,321 ^~~~~~~~~~~ 2022-12-04T14:59:13,321 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T14:59:13,322 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T14:59:13,322 ^~~~~~~~~~~ 2022-12-04T14:59:13,323 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,323 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T14:59:13,324 ^~~~~~~~~~~ 2022-12-04T14:59:13,324 P7_PROFILE 2022-12-04T14:59:13,325 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,325 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T14:59:13,326 ^~~~~~~~~~~ 2022-12-04T14:59:13,326 P7_PROFILE 2022-12-04T14:59:13,332 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T14:59:13,332 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T14:59:13,333 ^~~~~~~~~~~ 2022-12-04T14:59:13,333 P7_PROFILE 2022-12-04T14:59:13,341 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-04T14:59:13,342 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,342 if (ranges[lo].lower > end) return -1; 2022-12-04T14:59:13,343 ^ 2022-12-04T14:59:13,343 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,343 if (ranges[hi].upper < start) return -1; 2022-12-04T14:59:13,344 ^ 2022-12-04T14:59:13,344 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,344 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-04T14:59:13,345 ^ 2022-12-04T14:59:13,345 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,346 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T14:59:13,346 ^~ 2022-12-04T14:59:13,346 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,347 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T14:59:13,347 ^~ 2022-12-04T14:59:13,347 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,348 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T14:59:13,348 ^~ 2022-12-04T14:59:13,349 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,349 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T14:59:13,349 ^~ 2022-12-04T14:59:13,350 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-04T14:59:13,350 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-04T14:59:13,351 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T14:59:13,351 ^~ 2022-12-04T14:59:13,351 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,352 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T14:59:13,352 ^~ 2022-12-04T14:59:13,352 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-04T14:59:13,353 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,353 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:59:13,354 ^ 2022-12-04T14:59:13,354 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:59:13,354 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T14:59:13,355 ^~~~~~~ 2022-12-04T14:59:13,355 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:59:13,356 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T14:59:13,356 ^~~ 2022-12-04T14:59:13,356 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T14:59:13,357 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T14:59:13,357 ^~~~~~~ 2022-12-04T14:59:13,357 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,358 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T14:59:13,358 ^ 2022-12-04T14:59:13,359 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T14:59:13,359 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T14:59:13,359 ^~~~~~~ 2022-12-04T14:59:13,360 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T14:59:13,360 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T14:59:13,360 ^~~ 2022-12-04T14:59:13,361 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T14:59:13,361 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T14:59:13,362 ^~~~~~~ 2022-12-04T14:59:13,362 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,362 for (j= start; j<=end; j++) 2022-12-04T14:59:13,363 ^~ 2022-12-04T14:59:13,363 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-04T14:59:13,363 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T14:59:13,364 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T14:59:13,364 ^~ 2022-12-04T14:59:13,365 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T14:59:13,365 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T14:59:13,365 ^~ 2022-12-04T14:59:13,367 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-04T14:59:13,368 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,368 for (i=0; iseq_count; i++) { 2022-12-04T14:59:13,369 ^ 2022-12-04T14:59:13,373 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,373 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-04T14:59:13,374 ^~ 2022-12-04T14:59:13,374 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,374 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-04T14:59:13,375 ^~ 2022-12-04T14:59:13,375 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,375 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-04T14:59:13,376 ^~ 2022-12-04T14:59:13,376 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T14:59:13,376 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-04T14:59:13,377 ^~ 2022-12-04T14:59:13,377 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,378 for (i=0; iambig_list->count; i++) { 2022-12-04T14:59:13,378 ^ 2022-12-04T14:59:13,378 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,379 for (i=0; iseq_count; i++) 2022-12-04T14:59:13,379 ^ 2022-12-04T14:59:13,380 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-04T14:59:13,381 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T14:59:13,381 for (i=0; iseq_count; i++) { 2022-12-04T14:59:13,382 ^ 2022-12-04T14:59:13,499 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-04T14:59:13,499 !! 2022-12-04T14:59:13,500 ############################ 2022-12-04T14:59:13,500 # Package would be ignored # 2022-12-04T14:59:13,501 ############################ 2022-12-04T14:59:13,501 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-04T14:59:13,501 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:59:13,502 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-04T14:59:13,502 because it may contain data files, but this behavior is likely to change 2022-12-04T14:59:13,503 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:59:13,503 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-04T14:59:13,504 the `packages` configuration field or the proper discovery methods 2022-12-04T14:59:13,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:59:13,504 instead of `find_packages(...)`/`find:`). 2022-12-04T14:59:13,505 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:59:13,505 documentation page. 2022-12-04T14:59:13,506 !! 2022-12-04T14:59:13,507 check.warn(importable) 2022-12-04T14:59:13,507 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-04T14:59:13,507 !! 2022-12-04T14:59:13,508 ############################ 2022-12-04T14:59:13,509 # Package would be ignored # 2022-12-04T14:59:13,509 ############################ 2022-12-04T14:59:13,509 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-04T14:59:13,510 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:59:13,511 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-04T14:59:13,511 because it may contain data files, but this behavior is likely to change 2022-12-04T14:59:13,512 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:59:13,513 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-04T14:59:13,513 the `packages` configuration field or the proper discovery methods 2022-12-04T14:59:13,513 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:59:13,514 instead of `find_packages(...)`/`find:`). 2022-12-04T14:59:13,515 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:59:13,515 documentation page. 2022-12-04T14:59:13,517 !! 2022-12-04T14:59:13,517 check.warn(importable) 2022-12-04T14:59:13,518 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-04T14:59:13,518 !! 2022-12-04T14:59:13,520 ############################ 2022-12-04T14:59:13,520 # Package would be ignored # 2022-12-04T14:59:13,520 ############################ 2022-12-04T14:59:13,521 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-04T14:59:13,521 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:59:13,522 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-04T14:59:13,523 because it may contain data files, but this behavior is likely to change 2022-12-04T14:59:13,523 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:59:13,524 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-04T14:59:13,524 the `packages` configuration field or the proper discovery methods 2022-12-04T14:59:13,525 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:59:13,525 instead of `find_packages(...)`/`find:`). 2022-12-04T14:59:13,526 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:59:13,526 documentation page. 2022-12-04T14:59:13,527 !! 2022-12-04T14:59:13,528 check.warn(importable) 2022-12-04T14:59:13,529 /tmp/pip-build-env-tw4cmzph/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-04T14:59:13,529 !! 2022-12-04T14:59:13,530 ############################ 2022-12-04T14:59:13,531 # Package would be ignored # 2022-12-04T14:59:13,531 ############################ 2022-12-04T14:59:13,531 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-04T14:59:13,532 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T14:59:13,533 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-04T14:59:13,533 because it may contain data files, but this behavior is likely to change 2022-12-04T14:59:13,533 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T14:59:13,534 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-04T14:59:13,535 the `packages` configuration field or the proper discovery methods 2022-12-04T14:59:13,535 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T14:59:13,535 instead of `find_packages(...)`/`find:`). 2022-12-04T14:59:13,536 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T14:59:13,536 documentation page. 2022-12-04T14:59:13,537 !! 2022-12-04T14:59:13,538 check.warn(importable) 2022-12-04T14:59:13,539 checking whether can be included... yes 2022-12-04T14:59:13,539 checking whether can be included... yes 2022-12-04T14:59:13,539 checking whether can be included... yes 2022-12-04T14:59:13,540 checking whether can be included... yes 2022-12-04T14:59:13,540 checking whether can be included... yes 2022-12-04T14:59:13,541 checking whether can be included... yes 2022-12-04T14:59:13,541 checking whether can be included... yes 2022-12-04T14:59:13,542 checking whether can be included... yes 2022-12-04T14:59:13,542 checking whether can be included... yes 2022-12-04T14:59:13,542 checking whether can be included... yes 2022-12-04T14:59:13,543 checking whether can be included... yes 2022-12-04T14:59:13,543 checking whether can be included... yes 2022-12-04T14:59:13,544 checking whether can be included... yes 2022-12-04T14:59:13,544 checking whether function 'aligned_alloc' is available... no 2022-12-04T14:59:13,545 checking whether function 'erfc' is available... no 2022-12-04T14:59:13,545 checking whether function 'getpid' is available... yes 2022-12-04T14:59:13,545 checking whether function '_mm_malloc' is available... no 2022-12-04T14:59:13,546 checking whether function 'popen' is available... yes 2022-12-04T14:59:13,546 checking whether function 'posix_memalign' is available... yes 2022-12-04T14:59:13,547 checking whether function 'strcasecmp' is available... yes 2022-12-04T14:59:13,547 checking whether function 'strsep' is available... yes 2022-12-04T14:59:13,548 checking whether function 'sysconf' is available... yes 2022-12-04T14:59:13,548 checking whether function 'sysctl' is available... yes 2022-12-04T14:59:13,549 checking whether function 'times' is available... yes 2022-12-04T14:59:13,549 checking whether function 'fseeko' is available... yes 2022-12-04T14:59:13,549 checking whether can be included... yes 2022-12-04T14:59:13,550 checking whether can be included... yes 2022-12-04T14:59:13,550 checking whether can be included... yes 2022-12-04T14:59:13,551 checking whether can be included... yes 2022-12-04T14:59:13,551 checking whether can be included... yes 2022-12-04T14:59:13,551 checking whether can be included... yes 2022-12-04T14:59:13,552 checking whether can be included... yes 2022-12-04T14:59:13,552 checking whether can be included... yes 2022-12-04T14:59:13,552 checking whether function 'mkstemp' is available... yes 2022-12-04T14:59:13,552 checking whether function 'popen' is available... yes 2022-12-04T14:59:13,553 checking whether function 'putenv' is available... yes 2022-12-04T14:59:13,553 checking whether function 'strcasecmp' is available... yes 2022-12-04T14:59:13,553 checking whether function 'strsep' is available... yes 2022-12-04T14:59:13,554 checking whether function 'times' is available... yes 2022-12-04T14:59:13,554 checking whether function 'getpid' is available... yes 2022-12-04T14:59:13,554 checking whether function 'sysctl' is available... yes 2022-12-04T14:59:13,555 checking whether function 'sysconf' is available... yes 2022-12-04T14:59:13,555 checking whether function 'getcwd' is available... yes 2022-12-04T14:59:13,555 checking whether function 'chmod' is available... yes 2022-12-04T14:59:13,555 checking whether function 'stat' is available... yes 2022-12-04T14:59:13,556 checking whether function 'fstat' is available... yes 2022-12-04T14:59:13,556 checking whether function 'erfc' is available... no 2022-12-04T14:59:13,556 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-04T14:59:13,769 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-04T14:59:13,820 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp8p0owj9m[/] 2022-12-04T14:59:13,820 [bold magenta]cwd[/]: /tmp/pip-wheel-40kroefe/pyhmmer_c614552606e94cb8b920a2b753bf965d 2022-12-04T14:59:13,821 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-04T14:59:13,825 ERROR: Failed building wheel for pyhmmer 2022-12-04T14:59:13,831 Failed to build pyhmmer 2022-12-04T14:59:13,833 ERROR: Failed to build one or more wheels 2022-12-04T14:59:13,835 Exception information: 2022-12-04T14:59:13,835 Traceback (most recent call last): 2022-12-04T14:59:13,835 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-04T14:59:13,835 status = run_func(*args) 2022-12-04T14:59:13,835 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-04T14:59:13,835 return func(self, options, args) 2022-12-04T14:59:13,835 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-04T14:59:13,835 raise CommandError("Failed to build one or more wheels") 2022-12-04T14:59:13,835 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-04T14:59:13,845 Removed build tracker: '/tmp/pip-build-tracker-481n8an7'