2022-12-04T15:07:24,936 Created temporary directory: /tmp/pip-ephem-wheel-cache-203rsb1w 2022-12-04T15:07:24,938 Created temporary directory: /tmp/pip-build-tracker-xz4g1icn 2022-12-04T15:07:24,938 Initialized build tracking at /tmp/pip-build-tracker-xz4g1icn 2022-12-04T15:07:24,938 Created build tracker: /tmp/pip-build-tracker-xz4g1icn 2022-12-04T15:07:24,939 Entered build tracker: /tmp/pip-build-tracker-xz4g1icn 2022-12-04T15:07:24,939 Created temporary directory: /tmp/pip-wheel-884ziwy2 2022-12-04T15:07:24,942 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T15:07:24,945 Created temporary directory: /tmp/pip-ephem-wheel-cache-p_ow682r 2022-12-04T15:07:24,972 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T15:07:24,976 2 location(s) to search for versions of pyhmmer: 2022-12-04T15:07:24,976 * https://pypi.org/simple/pyhmmer/ 2022-12-04T15:07:24,976 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T15:07:24,976 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-04T15:07:24,977 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-04T15:07:24,978 Found index url https://pypi.org/simple 2022-12-04T15:07:25,039 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-04T15:07:25,125 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T15:07:25,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T15:07:25,132 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T15:07:25,132 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-04T15:07:25,199 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,199 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,199 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ab/c0/3ef8ced20ac64ab83d16d855b23540751c1626d1d5b8e8cee4440bcabfb3/pyhmmer-0.7.0rc4-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,237 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2a/df/a287f8b111ba8688c5c58e772e6d276fb3c14515249e39a50515160a85d2/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,237 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/71/e5/96ce896b08d17b9114817c947683e144e760f58bd9f48f53f5436ef25079/pyhmmer-0.7.0rc4-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,237 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/a5/aa8fc0a41d66c95b60097ed9aa5d11cd9b1be853c1ffafeca1e42f1095b6/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,238 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/7d/284867ffb3cd7eac7de62716e1dbb495331004766acf8f49419f0d04e103/pyhmmer-0.7.0rc4-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,238 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0f/e0fdfe3a3872753e8205280a83f8bfb09cdd56050bfb84137627c905bdc0/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,238 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T15:07:25,238 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2022-12-04T15:07:25,239 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T15:07:25,239 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T15:07:25,240 Found index url https://www.piwheels.org/simple 2022-12-04T15:07:25,465 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-04T15:07:25,466 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T15:07:25,466 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-04T15:07:25,489 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-04T15:07:25,506 Collecting pyhmmer==0.7.0rc4 2022-12-04T15:07:25,508 Created temporary directory: /tmp/pip-unpack-bwof22pn 2022-12-04T15:07:25,559 Downloading pyhmmer-0.7.0rc4.tar.gz (11.0 MB) 2022-12-04T15:07:29,650 Added pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz to build tracker '/tmp/pip-build-tracker-xz4g1icn' 2022-12-04T15:07:29,656 Created temporary directory: /tmp/pip-build-env-gq2wy2qk 2022-12-04T15:07:29,666 Installing build dependencies: started 2022-12-04T15:07:29,667 Running command pip subprocess to install build dependencies 2022-12-04T15:07:30,938 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-04T15:07:31,313 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T15:07:31,339 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T15:07:32,945 Collecting setuptools>=46.4 2022-12-04T15:07:33,079 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-04T15:07:34,419 Collecting cython~=0.29.16 2022-12-04T15:07:34,894 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-12-04T15:07:36,827 Installing collected packages: setuptools, cython 2022-12-04T15:07:42,258 Creating /tmp/pip-build-env-gq2wy2qk/overlay/bin 2022-12-04T15:07:42,260 changing mode of /tmp/pip-build-env-gq2wy2qk/overlay/bin/cygdb to 755 2022-12-04T15:07:42,263 changing mode of /tmp/pip-build-env-gq2wy2qk/overlay/bin/cython to 755 2022-12-04T15:07:42,265 changing mode of /tmp/pip-build-env-gq2wy2qk/overlay/bin/cythonize to 755 2022-12-04T15:07:42,287 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-04T15:07:42,301 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T15:07:42,302 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T15:07:42,604 Installing build dependencies: finished with status 'done' 2022-12-04T15:07:42,610 Getting requirements to build wheel: started 2022-12-04T15:07:42,611 Running command Getting requirements to build wheel 2022-12-04T15:07:43,730 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T15:07:44,000 Getting requirements to build wheel: finished with status 'done' 2022-12-04T15:07:44,017 Installing backend dependencies: started 2022-12-04T15:07:44,018 Running command pip subprocess to install backend dependencies 2022-12-04T15:07:45,219 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-04T15:07:45,588 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T15:07:45,612 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T15:07:46,068 Collecting wheel 2022-12-04T15:07:46,086 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-04T15:07:47,516 Installing collected packages: wheel 2022-12-04T15:07:47,667 Creating /tmp/pip-build-env-gq2wy2qk/normal/bin 2022-12-04T15:07:47,670 changing mode of /tmp/pip-build-env-gq2wy2qk/normal/bin/wheel to 755 2022-12-04T15:07:47,684 Successfully installed wheel-0.38.4 2022-12-04T15:07:47,697 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T15:07:47,697 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T15:07:47,904 Installing backend dependencies: finished with status 'done' 2022-12-04T15:07:47,907 Created temporary directory: /tmp/pip-modern-metadata-z8qbz3yx 2022-12-04T15:07:47,910 Preparing metadata (pyproject.toml): started 2022-12-04T15:07:47,911 Running command Preparing metadata (pyproject.toml) 2022-12-04T15:07:49,035 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T15:07:49,192 running dist_info 2022-12-04T15:07:49,207 creating /tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info 2022-12-04T15:07:49,213 writing /tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/PKG-INFO 2022-12-04T15:07:49,217 writing dependency_links to /tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/dependency_links.txt 2022-12-04T15:07:49,219 writing requirements to /tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/requires.txt 2022-12-04T15:07:49,220 writing top-level names to /tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/top_level.txt 2022-12-04T15:07:49,222 writing manifest file '/tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T15:07:49,259 reading manifest file '/tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T15:07:49,263 reading manifest template 'MANIFEST.in' 2022-12-04T15:07:49,914 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T15:07:49,916 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T15:07:49,918 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T15:07:49,919 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T15:07:49,920 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T15:07:49,922 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T15:07:49,923 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T15:07:49,924 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T15:07:49,925 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T15:07:49,927 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T15:07:49,928 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T15:07:49,929 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T15:07:49,932 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T15:07:49,933 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T15:07:49,933 adding license file 'COPYING' 2022-12-04T15:07:49,962 writing manifest file '/tmp/pip-modern-metadata-z8qbz3yx/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T15:07:49,964 creating '/tmp/pip-modern-metadata-z8qbz3yx/pyhmmer-0.7.0rc4.dist-info' 2022-12-04T15:07:50,191 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-04T15:07:50,199 Source in /tmp/pip-wheel-884ziwy2/pyhmmer_373049cfc9eb4dd9b6486318b1f6ba7e has version 0.7.0rc4, which satisfies requirement pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz 2022-12-04T15:07:50,200 Removed pyhmmer==0.7.0rc4 from https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz from build tracker '/tmp/pip-build-tracker-xz4g1icn' 2022-12-04T15:07:50,207 Created temporary directory: /tmp/pip-unpack-npyrfc3r 2022-12-04T15:07:50,208 Building wheels for collected packages: pyhmmer 2022-12-04T15:07:50,213 Created temporary directory: /tmp/pip-wheel-mvk9en8_ 2022-12-04T15:07:50,213 Destination directory: /tmp/pip-wheel-mvk9en8_ 2022-12-04T15:07:50,216 Building wheel for pyhmmer (pyproject.toml): started 2022-12-04T15:07:50,217 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-04T15:07:51,297 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T15:07:51,479 running bdist_wheel 2022-12-04T15:07:51,494 running build 2022-12-04T15:07:51,494 running build_py 2022-12-04T15:07:51,502 creating build 2022-12-04T15:07:51,503 creating build/lib.linux-armv7l-cpython-39 2022-12-04T15:07:51,504 creating build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:51,505 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:51,507 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:51,509 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:51,513 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,515 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,517 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,519 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,521 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,524 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:51,527 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,528 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,530 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,532 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,535 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,537 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,539 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,541 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,544 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,547 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,549 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,551 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,553 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,556 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-04T15:07:51,560 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,561 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,563 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,565 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,567 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,569 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,572 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,575 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,577 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,580 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,581 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,584 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,587 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,588 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-04T15:07:51,591 running egg_info 2022-12-04T15:07:51,608 writing pyhmmer.egg-info/PKG-INFO 2022-12-04T15:07:51,611 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-04T15:07:51,613 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-04T15:07:51,615 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-04T15:07:51,631 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T15:07:51,649 reading manifest template 'MANIFEST.in' 2022-12-04T15:07:52,277 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T15:07:52,280 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T15:07:52,282 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T15:07:52,284 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T15:07:52,286 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T15:07:52,287 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T15:07:52,289 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T15:07:52,292 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T15:07:52,294 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T15:07:52,295 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T15:07:52,297 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T15:07:52,299 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T15:07:52,301 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T15:07:52,303 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T15:07:52,303 adding license file 'COPYING' 2022-12-04T15:07:52,341 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T15:07:52,348 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,348 !! 2022-12-04T15:07:52,349 ############################ 2022-12-04T15:07:52,349 # Package would be ignored # 2022-12-04T15:07:52,349 ############################ 2022-12-04T15:07:52,349 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-04T15:07:52,349 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,350 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-04T15:07:52,350 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,350 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,350 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-04T15:07:52,350 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,350 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,350 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,351 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,351 documentation page. 2022-12-04T15:07:52,351 !! 2022-12-04T15:07:52,351 check.warn(importable) 2022-12-04T15:07:52,351 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,352 !! 2022-12-04T15:07:52,352 ############################ 2022-12-04T15:07:52,352 # Package would be ignored # 2022-12-04T15:07:52,352 ############################ 2022-12-04T15:07:52,352 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-04T15:07:52,352 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,353 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-04T15:07:52,353 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,353 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,353 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-04T15:07:52,353 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,353 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,353 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,354 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,354 documentation page. 2022-12-04T15:07:52,354 !! 2022-12-04T15:07:52,354 check.warn(importable) 2022-12-04T15:07:52,354 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,355 !! 2022-12-04T15:07:52,355 ############################ 2022-12-04T15:07:52,355 # Package would be ignored # 2022-12-04T15:07:52,355 ############################ 2022-12-04T15:07:52,355 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-04T15:07:52,355 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,356 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-04T15:07:52,356 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,356 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,356 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-04T15:07:52,356 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,356 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,357 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,357 documentation page. 2022-12-04T15:07:52,357 !! 2022-12-04T15:07:52,357 check.warn(importable) 2022-12-04T15:07:52,357 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,357 !! 2022-12-04T15:07:52,358 ############################ 2022-12-04T15:07:52,358 # Package would be ignored # 2022-12-04T15:07:52,358 ############################ 2022-12-04T15:07:52,358 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-04T15:07:52,358 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,358 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-04T15:07:52,359 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,359 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,359 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-04T15:07:52,359 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,359 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,359 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,359 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,359 documentation page. 2022-12-04T15:07:52,360 !! 2022-12-04T15:07:52,360 check.warn(importable) 2022-12-04T15:07:52,360 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,360 !! 2022-12-04T15:07:52,361 ############################ 2022-12-04T15:07:52,361 # Package would be ignored # 2022-12-04T15:07:52,361 ############################ 2022-12-04T15:07:52,361 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-04T15:07:52,361 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,361 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-04T15:07:52,361 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,361 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,362 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-04T15:07:52,362 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,362 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,362 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,362 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,362 documentation page. 2022-12-04T15:07:52,363 !! 2022-12-04T15:07:52,363 check.warn(importable) 2022-12-04T15:07:52,363 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,363 !! 2022-12-04T15:07:52,363 ############################ 2022-12-04T15:07:52,364 # Package would be ignored # 2022-12-04T15:07:52,364 ############################ 2022-12-04T15:07:52,364 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-04T15:07:52,364 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,364 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-04T15:07:52,364 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,364 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,365 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-04T15:07:52,365 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,365 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,365 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,365 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,365 documentation page. 2022-12-04T15:07:52,366 !! 2022-12-04T15:07:52,366 check.warn(importable) 2022-12-04T15:07:52,366 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,366 !! 2022-12-04T15:07:52,366 ############################ 2022-12-04T15:07:52,367 # Package would be ignored # 2022-12-04T15:07:52,367 ############################ 2022-12-04T15:07:52,367 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-04T15:07:52,367 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,367 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-04T15:07:52,367 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,367 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,367 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-04T15:07:52,368 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,368 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,368 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,368 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,368 documentation page. 2022-12-04T15:07:52,368 !! 2022-12-04T15:07:52,369 check.warn(importable) 2022-12-04T15:07:52,369 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,369 !! 2022-12-04T15:07:52,369 ############################ 2022-12-04T15:07:52,369 # Package would be ignored # 2022-12-04T15:07:52,369 ############################ 2022-12-04T15:07:52,370 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-04T15:07:52,370 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,370 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-04T15:07:52,370 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,370 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,370 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-04T15:07:52,370 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,371 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,371 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,371 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,371 documentation page. 2022-12-04T15:07:52,371 !! 2022-12-04T15:07:52,372 check.warn(importable) 2022-12-04T15:07:52,372 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,372 !! 2022-12-04T15:07:52,372 ############################ 2022-12-04T15:07:52,372 # Package would be ignored # 2022-12-04T15:07:52,372 ############################ 2022-12-04T15:07:52,372 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-04T15:07:52,372 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,373 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-04T15:07:52,373 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,373 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,373 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-04T15:07:52,373 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,373 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,373 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,374 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,374 documentation page. 2022-12-04T15:07:52,374 !! 2022-12-04T15:07:52,374 check.warn(importable) 2022-12-04T15:07:52,374 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,374 !! 2022-12-04T15:07:52,375 ############################ 2022-12-04T15:07:52,375 # Package would be ignored # 2022-12-04T15:07:52,375 ############################ 2022-12-04T15:07:52,375 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-04T15:07:52,375 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,376 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-04T15:07:52,376 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,376 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,376 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-04T15:07:52,376 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,376 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,376 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,377 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,377 documentation page. 2022-12-04T15:07:52,377 !! 2022-12-04T15:07:52,377 check.warn(importable) 2022-12-04T15:07:52,377 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,377 !! 2022-12-04T15:07:52,378 ############################ 2022-12-04T15:07:52,378 # Package would be ignored # 2022-12-04T15:07:52,378 ############################ 2022-12-04T15:07:52,378 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-04T15:07:52,378 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,378 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-04T15:07:52,379 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,379 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,379 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-04T15:07:52,379 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,379 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,379 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,379 documentation page. 2022-12-04T15:07:52,380 !! 2022-12-04T15:07:52,380 check.warn(importable) 2022-12-04T15:07:52,380 /tmp/pip-build-env-gq2wy2qk/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-04T15:07:52,380 !! 2022-12-04T15:07:52,381 ############################ 2022-12-04T15:07:52,381 # Package would be ignored # 2022-12-04T15:07:52,381 ############################ 2022-12-04T15:07:52,381 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-04T15:07:52,381 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T15:07:52,381 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-04T15:07:52,381 because it may contain data files, but this behavior is likely to change 2022-12-04T15:07:52,381 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T15:07:52,382 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-04T15:07:52,382 the `packages` configuration field or the proper discovery methods 2022-12-04T15:07:52,382 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T15:07:52,382 instead of `find_packages(...)`/`find:`). 2022-12-04T15:07:52,382 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T15:07:52,382 documentation page. 2022-12-04T15:07:52,383 !! 2022-12-04T15:07:52,383 check.warn(importable) 2022-12-04T15:07:52,383 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,385 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,387 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,391 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,393 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,396 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,403 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,405 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,408 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,410 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,413 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,417 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,427 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-04T15:07:52,429 creating build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-04T15:07:52,430 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-04T15:07:52,432 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-04T15:07:52,435 creating build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,436 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,438 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,440 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,442 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,444 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,446 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,448 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-04T15:07:52,450 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-04T15:07:52,452 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-12-04T15:07:52,453 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-12-04T15:07:52,455 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-12-04T15:07:52,456 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-12-04T15:07:52,458 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-04T15:07:52,459 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-04T15:07:52,462 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-04T15:07:52,466 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-04T15:07:52,469 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-04T15:07:52,542 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,543 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,548 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,552 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,554 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,557 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,561 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,568 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,571 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,573 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,576 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,580 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,585 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,588 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,591 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,595 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,599 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,739 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,766 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,769 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,821 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-04T15:07:52,890 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,891 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,898 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,902 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,909 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,917 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,927 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:52,938 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-04T15:07:53,057 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-04T15:07:53,058 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-04T15:07:53,064 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-04T15:07:53,070 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-04T15:07:53,075 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-04T15:07:53,175 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-04T15:07:53,177 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-04T15:07:53,180 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-04T15:07:53,183 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-04T15:07:53,186 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-04T15:07:53,187 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-04T15:07:53,190 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-04T15:07:53,194 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-04T15:07:53,197 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-04T15:07:53,200 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,202 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,227 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,235 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,311 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,316 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,319 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,322 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-04T15:07:53,325 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,326 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,329 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,332 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,335 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,338 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,340 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,343 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,347 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,350 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-04T15:07:53,357 running build_clib 2022-12-04T15:07:53,365 creating build/temp.linux-armv7l-cpython-39 2022-12-04T15:07:53,366 generating "divsufsort.h" for divsufsort library 2022-12-04T15:07:53,367 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-39/divsufsort.h 2022-12-04T15:07:53,369 generating "esl_config.h" for easel library 2022-12-04T15:07:53,466 checking whether can be included... yes 2022-12-04T15:07:53,572 checking whether can be included... yes 2022-12-04T15:07:53,655 checking whether can be included... yes 2022-12-04T15:07:53,740 checking whether can be included... yes 2022-12-04T15:07:53,822 checking whether can be included... yes 2022-12-04T15:07:53,903 checking whether can be included... yes 2022-12-04T15:07:53,990 checking whether can be included... yes 2022-12-04T15:07:54,084 checking whether can be included... yes 2022-12-04T15:07:54,210 checking whether can be included... yes 2022-12-04T15:07:54,295 checking whether can be included... yes 2022-12-04T15:07:54,445 checking whether can be included... yes 2022-12-04T15:07:54,564 checking whether can be included... yes 2022-12-04T15:07:54,650 checking whether can be included... yes 2022-12-04T15:07:54,706 checking whether function 'aligned_alloc' is available... no 2022-12-04T15:07:54,761 checking whether function 'erfc' is available... no 2022-12-04T15:07:54,980 checking whether function 'getpid' is available... yes 2022-12-04T15:07:55,188 checking whether function '_mm_malloc' is available... no 2022-12-04T15:07:55,386 checking whether function 'popen' is available... yes 2022-12-04T15:07:55,581 checking whether function 'posix_memalign' is available... yes 2022-12-04T15:07:55,797 checking whether function 'strcasecmp' is available... yes 2022-12-04T15:07:56,005 checking whether function 'strsep' is available... yes 2022-12-04T15:07:56,200 checking whether function 'sysconf' is available... yes 2022-12-04T15:07:56,397 checking whether function 'sysctl' is available... yes 2022-12-04T15:07:56,611 checking whether function 'times' is available... yes 2022-12-04T15:07:56,814 checking whether function 'fseeko' is available... yes 2022-12-04T15:07:56,818 generating "p7_config.h" for hmmer library 2022-12-04T15:07:56,901 checking whether can be included... yes 2022-12-04T15:07:56,987 checking whether can be included... yes 2022-12-04T15:07:57,073 checking whether can be included... yes 2022-12-04T15:07:57,165 checking whether can be included... yes 2022-12-04T15:07:57,260 checking whether can be included... yes 2022-12-04T15:07:57,378 checking whether can be included... yes 2022-12-04T15:07:57,539 checking whether can be included... yes 2022-12-04T15:07:57,628 checking whether can be included... yes 2022-12-04T15:07:57,829 checking whether function 'mkstemp' is available... yes 2022-12-04T15:07:58,028 checking whether function 'popen' is available... yes 2022-12-04T15:07:58,225 checking whether function 'putenv' is available... yes 2022-12-04T15:07:58,458 checking whether function 'strcasecmp' is available... yes 2022-12-04T15:07:58,654 checking whether function 'strsep' is available... yes 2022-12-04T15:07:58,850 checking whether function 'times' is available... yes 2022-12-04T15:07:59,049 checking whether function 'getpid' is available... yes 2022-12-04T15:07:59,275 checking whether function 'sysctl' is available... yes 2022-12-04T15:07:59,467 checking whether function 'sysconf' is available... yes 2022-12-04T15:07:59,664 checking whether function 'getcwd' is available... yes 2022-12-04T15:07:59,859 checking whether function 'chmod' is available... yes 2022-12-04T15:08:00,055 checking whether function 'stat' is available... yes 2022-12-04T15:08:00,257 checking whether function 'fstat' is available... yes 2022-12-04T15:08:00,311 checking whether function 'erfc' is available... no 2022-12-04T15:08:00,314 generating build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-04T15:08:00,324 generating build/temp.linux-armv7l-cpython-39/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-04T15:08:00,335 generating build/temp.linux-armv7l-cpython-39/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T15:08:00,366 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T15:08:00,366 creating build/temp.linux-armv7l-cpython-39/vendor 2022-12-04T15:08:00,367 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer 2022-12-04T15:08:00,367 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort 2022-12-04T15:08:00,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T15:08:04,227 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libdivsufsort.a build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T15:08:04,254 generating build/temp.linux-armv7l-cpython-39/libeasel.a from vendor/easel/interface_lapack.c, vendor/easel/esl_gamma.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_paml.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_msafile.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_hmm.c, vendor/easel/esl_buffer.c, vendor/easel/esl_graph.c, vendor/easel/esl_bitfield.c, vendor/easel/interface_gsl.c, vendor/easel/esl_gencode.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_sqio.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_mem.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_neon.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_stats.c, vendor/easel/easel.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_msa.c, vendor/easel/esl_vmx.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_composition.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_arr3.c, vendor/easel/esl_mpi.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_weibull.c, vendor/easel/esl_varint.c, vendor/easel/esl_recorder.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_stack.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_histogram.c, vendor/easel/esl_avx512.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sq.c, vendor/easel/esl_threads.c, vendor/easel/esl_sse.c, vendor/easel/esl_normal.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_tree.c, vendor/easel/esl_rand64.c, vendor/easel/esl_cpu.c, vendor/easel/esl_json.c, vendor/easel/esl_huffman.c, vendor/easel/esl_alloc.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_cluster.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_exponential.c, vendor/easel/esl_gev.c, vendor/easel/esl_heap.c, vendor/easel/esl_red_black.c, vendor/easel/esl_arr2.c, vendor/easel/esl_distance.c, vendor/easel/esl_random.c, vendor/easel/esl_regexp.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_wuss.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_ssi.c, vendor/easel/esl_getopts.c, vendor/easel/esl_swat.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_ratematrix.c, build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-12-04T15:08:04,258 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-04T15:08:04,259 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-04T15:08:04,259 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-04T15:08:04,260 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-04T15:08:04,260 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-12-04T15:08:04,260 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-12-04T15:08:04,261 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-12-04T15:08:04,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o 2022-12-04T15:08:04,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o 2022-12-04T15:08:04,273 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o 2022-12-04T15:08:04,274 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o 2022-12-04T15:08:04,367 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-04T15:08:04,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o 2022-12-04T15:08:04,454 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-04T15:08:04,454 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,454 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-04T15:08:04,455 | ^~ 2022-12-04T15:08:04,455 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,455 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T15:08:04,455 | ^~ 2022-12-04T15:08:04,456 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,456 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T15:08:04,456 | ^~ 2022-12-04T15:08:04,466 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-04T15:08:04,467 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,467 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,468 | ^~ 2022-12-04T15:08:04,469 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-04T15:08:04,469 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,469 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,469 | ^~ 2022-12-04T15:08:04,470 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-04T15:08:04,470 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,470 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,471 | ^~ 2022-12-04T15:08:04,473 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-04T15:08:04,474 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,474 1036 | if (status != eslOK || nres != W) { 2022-12-04T15:08:04,474 | ^~ 2022-12-04T15:08:04,475 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,476 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,476 | ^~ 2022-12-04T15:08:04,486 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-04T15:08:04,486 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,487 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-04T15:08:04,487 | ^ 2022-12-04T15:08:04,490 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,491 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-04T15:08:04,491 | ^~ 2022-12-04T15:08:04,491 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-04T15:08:04,492 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,492 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-04T15:08:04,493 | ^ 2022-12-04T15:08:04,493 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,494 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T15:08:04,494 | ^~ 2022-12-04T15:08:04,494 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,494 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T15:08:04,495 | ^ 2022-12-04T15:08:04,496 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,496 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T15:08:04,496 | ^ 2022-12-04T15:08:04,496 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,497 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T15:08:04,497 | ^ 2022-12-04T15:08:04,497 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,498 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T15:08:04,498 | ^ 2022-12-04T15:08:04,498 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,498 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-04T15:08:04,499 | ^ 2022-12-04T15:08:04,499 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,499 1527 | if (inx < volume->end_seq) break; 2022-12-04T15:08:04,500 | ^ 2022-12-04T15:08:04,511 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,511 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-04T15:08:04,511 | ^~ 2022-12-04T15:08:04,512 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,512 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-12-04T15:08:04,512 | ^~ 2022-12-04T15:08:04,513 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,513 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-12-04T15:08:04,513 | ^ 2022-12-04T15:08:04,514 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,514 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T15:08:04,514 | ^~ 2022-12-04T15:08:04,515 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,515 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T15:08:04,515 | ^~ 2022-12-04T15:08:04,516 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,516 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T15:08:04,516 | ^~ 2022-12-04T15:08:04,516 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-04T15:08:04,517 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,517 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,517 | ^~ 2022-12-04T15:08:04,518 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,518 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T15:08:04,518 | ^~ 2022-12-04T15:08:04,520 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,520 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T15:08:04,521 | ^~ 2022-12-04T15:08:04,522 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-04T15:08:04,524 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,524 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,524 | ^~ 2022-12-04T15:08:04,526 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,527 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T15:08:04,527 | ^~ 2022-12-04T15:08:04,532 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,532 1754 | if (ncbi->seq_apos - sq->doff < size) { 2022-12-04T15:08:04,533 | ^ 2022-12-04T15:08:04,536 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-04T15:08:04,537 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,537 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,538 | ^~ 2022-12-04T15:08:04,541 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,542 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T15:08:04,542 | ^~ 2022-12-04T15:08:04,548 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-04T15:08:04,549 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,549 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T15:08:04,550 | ^~ 2022-12-04T15:08:04,554 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,555 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-04T15:08:04,555 | ^~ 2022-12-04T15:08:04,562 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-04T15:08:04,564 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,565 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T15:08:04,565 | ^ 2022-12-04T15:08:04,567 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,567 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T15:08:04,568 | ^ 2022-12-04T15:08:04,569 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,570 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T15:08:04,570 | ^~ 2022-12-04T15:08:04,573 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-04T15:08:04,574 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,575 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T15:08:04,575 | ^ 2022-12-04T15:08:04,576 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,577 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T15:08:04,577 | ^ 2022-12-04T15:08:04,579 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:04,579 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T15:08:04,579 | ^~ 2022-12-04T15:08:04,584 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-04T15:08:04,585 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-04T15:08:04,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o 2022-12-04T15:08:04,587 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:04,587 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-04T15:08:04,587 | ^~ 2022-12-04T15:08:04,661 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-04T15:08:04,661 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o 2022-12-04T15:08:04,685 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-04T15:08:04,686 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o 2022-12-04T15:08:05,136 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-04T15:08:05,137 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o 2022-12-04T15:08:05,921 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-04T15:08:05,922 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o 2022-12-04T15:08:05,985 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-04T15:08:05,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o 2022-12-04T15:08:06,154 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-04T15:08:06,155 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:06,155 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-04T15:08:06,156 | ^~ 2022-12-04T15:08:06,807 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-04T15:08:06,808 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o 2022-12-04T15:08:07,003 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-04T15:08:07,003 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,004 94 | for (h = 0; h < kh->hashsize; h++) 2022-12-04T15:08:07,004 | ^ 2022-12-04T15:08:07,004 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-04T15:08:07,005 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,005 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T15:08:07,005 | ^ 2022-12-04T15:08:07,006 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-04T15:08:07,006 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,006 215 | for (h = 0; h < kh->hashsize; h++) 2022-12-04T15:08:07,007 | ^ 2022-12-04T15:08:07,009 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-04T15:08:07,009 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,010 310 | if (kh->nkeys > 3*kh->hashsize) 2022-12-04T15:08:07,010 | ^ 2022-12-04T15:08:07,012 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-04T15:08:07,012 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,013 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T15:08:07,013 | ^ 2022-12-04T15:08:07,015 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-04T15:08:07,016 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:07,016 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T15:08:07,016 | ^ 2022-12-04T15:08:07,504 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-04T15:08:07,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o 2022-12-04T15:08:07,550 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-04T15:08:07,551 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o 2022-12-04T15:08:07,812 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-04T15:08:07,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o 2022-12-04T15:08:07,867 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-04T15:08:07,868 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o 2022-12-04T15:08:07,931 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-04T15:08:07,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o 2022-12-04T15:08:08,304 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-04T15:08:08,305 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:08,305 243 | if (opt_fx) *opt_fx = fx; 2022-12-04T15:08:08,305 | ~~~~~~~~^~~~ 2022-12-04T15:08:08,306 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:08,306 720 | m = 0.5 * (a+b); 2022-12-04T15:08:08,306 | ~~^~~ 2022-12-04T15:08:08,307 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-04T15:08:08,307 118 | double ax,bx,cx; 2022-12-04T15:08:08,307 | ^~ 2022-12-04T15:08:08,308 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:08,308 720 | m = 0.5 * (a+b); 2022-12-04T15:08:08,308 | ~~^~~ 2022-12-04T15:08:08,308 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-04T15:08:08,309 118 | double ax,bx,cx; 2022-12-04T15:08:08,309 | ^~ 2022-12-04T15:08:08,611 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-04T15:08:08,612 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o 2022-12-04T15:08:08,856 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-04T15:08:08,856 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-04T15:08:08,858 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:08,859 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:08,859 | ^ 2022-12-04T15:08:08,859 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:08,860 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T15:08:08,860 | ^~~~~~~ 2022-12-04T15:08:08,861 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:08,861 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:08,861 | ^~~ 2022-12-04T15:08:08,862 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:08,862 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T15:08:08,862 | ^~~~~~~ 2022-12-04T15:08:08,865 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:08,865 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:08,865 | ^ 2022-12-04T15:08:08,866 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:08,866 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T15:08:08,866 | ^~~~~~~ 2022-12-04T15:08:08,867 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:08,868 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:08,868 | ^~~ 2022-12-04T15:08:08,868 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:08,869 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T15:08:08,869 | ^~~~~~~ 2022-12-04T15:08:08,872 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-04T15:08:08,873 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o 2022-12-04T15:08:09,013 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-04T15:08:09,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o 2022-12-04T15:08:09,036 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-04T15:08:09,037 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o 2022-12-04T15:08:09,956 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-04T15:08:09,957 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o 2022-12-04T15:08:10,008 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-04T15:08:10,009 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o 2022-12-04T15:08:10,180 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-04T15:08:10,182 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o 2022-12-04T15:08:10,634 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-04T15:08:10,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o 2022-12-04T15:08:10,831 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-04T15:08:10,832 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o 2022-12-04T15:08:11,032 In file included from vendor/easel/esl_hmm.c:9: 2022-12-04T15:08:11,032 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-04T15:08:11,032 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:11,033 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T15:08:11,033 | ^ 2022-12-04T15:08:11,033 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T15:08:11,034 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T15:08:11,034 | ^~~~~~~ 2022-12-04T15:08:11,034 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:11,035 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T15:08:11,035 | ^~~ 2022-12-04T15:08:11,035 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T15:08:11,036 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T15:08:11,036 | ^~~~~~~ 2022-12-04T15:08:11,524 generating build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-04T15:08:11,525 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o 2022-12-04T15:08:11,615 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-04T15:08:11,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o 2022-12-04T15:08:11,774 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-04T15:08:11,775 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:11,775 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-04T15:08:11,775 | ^~~~~~~~~~~~~~~~ 2022-12-04T15:08:11,844 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-04T15:08:11,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o 2022-12-04T15:08:11,953 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-04T15:08:11,954 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o 2022-12-04T15:08:12,211 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-04T15:08:12,212 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o 2022-12-04T15:08:13,084 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-04T15:08:13,085 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o 2022-12-04T15:08:13,173 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-04T15:08:13,174 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o 2022-12-04T15:08:13,691 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-04T15:08:13,692 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o 2022-12-04T15:08:14,109 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-04T15:08:14,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o 2022-12-04T15:08:14,506 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-04T15:08:14,507 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o 2022-12-04T15:08:14,558 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-04T15:08:14,559 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o 2022-12-04T15:08:14,670 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-04T15:08:14,671 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o 2022-12-04T15:08:14,790 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-04T15:08:14,791 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o 2022-12-04T15:08:15,015 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-04T15:08:15,016 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o 2022-12-04T15:08:15,079 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-04T15:08:15,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o 2022-12-04T15:08:15,222 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-04T15:08:15,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o 2022-12-04T15:08:15,320 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-04T15:08:15,321 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o 2022-12-04T15:08:15,581 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-04T15:08:15,582 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o 2022-12-04T15:08:16,044 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-04T15:08:16,045 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:16,045 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-04T15:08:16,046 | ~~~~^~~~~~~ 2022-12-04T15:08:16,146 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-04T15:08:16,147 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o 2022-12-04T15:08:16,161 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-04T15:08:16,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o 2022-12-04T15:08:16,283 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-04T15:08:16,284 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o 2022-12-04T15:08:16,565 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-04T15:08:16,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o 2022-12-04T15:08:16,908 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-04T15:08:16,909 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o 2022-12-04T15:08:16,921 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-04T15:08:16,923 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o 2022-12-04T15:08:17,017 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-04T15:08:17,018 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:17,018 722 | for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-04T15:08:17,019 | ^ 2022-12-04T15:08:17,020 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-04T15:08:17,020 645 | char *p; 2022-12-04T15:08:17,020 | ^ 2022-12-04T15:08:17,514 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-04T15:08:17,515 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o 2022-12-04T15:08:17,813 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-04T15:08:17,814 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o 2022-12-04T15:08:17,910 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-04T15:08:17,912 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o 2022-12-04T15:08:18,044 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-04T15:08:18,045 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,045 253 | if (alphatype != dd->abc_r->type) 2022-12-04T15:08:18,045 | ^~ 2022-12-04T15:08:18,054 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-04T15:08:18,054 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:18,055 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-04T15:08:18,055 | ^ 2022-12-04T15:08:18,055 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:18,056 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-04T15:08:18,056 | ^ 2022-12-04T15:08:18,056 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:18,056 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-04T15:08:18,057 | ^ 2022-12-04T15:08:18,057 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:18,057 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-04T15:08:18,057 | ^ 2022-12-04T15:08:18,059 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,060 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-04T15:08:18,060 | ^~ 2022-12-04T15:08:18,060 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,060 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-04T15:08:18,061 | ^~ 2022-12-04T15:08:18,061 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,061 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T15:08:18,062 | ^~ 2022-12-04T15:08:18,062 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,062 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T15:08:18,062 | ^~ 2022-12-04T15:08:18,097 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-04T15:08:18,097 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T15:08:18,098 1129 | } 2022-12-04T15:08:18,098 | ^ 2022-12-04T15:08:18,104 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-04T15:08:18,105 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T15:08:18,105 1052 | } 2022-12-04T15:08:18,105 | ^ 2022-12-04T15:08:18,194 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-04T15:08:18,195 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o 2022-12-04T15:08:18,299 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-04T15:08:18,300 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o 2022-12-04T15:08:18,403 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-04T15:08:18,404 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:18,404 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-04T15:08:18,404 | ^~ 2022-12-04T15:08:18,528 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-04T15:08:18,529 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T15:08:18,529 1636 | for (pos = 0; pos < sq->n; pos++) 2022-12-04T15:08:18,529 | ^ 2022-12-04T15:08:18,530 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T15:08:18,530 1645 | for (pos = 1; pos <= sq->n; pos++) 2022-12-04T15:08:18,530 | ^~ 2022-12-04T15:08:19,154 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-04T15:08:19,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o 2022-12-04T15:08:19,474 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-04T15:08:19,475 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o 2022-12-04T15:08:19,488 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-04T15:08:19,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o 2022-12-04T15:08:19,702 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-04T15:08:19,703 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o 2022-12-04T15:08:20,050 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-04T15:08:20,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o 2022-12-04T15:08:20,244 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-04T15:08:20,244 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:20,245 541 | if (rank > h->n) 2022-12-04T15:08:20,245 | ^ 2022-12-04T15:08:21,047 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-04T15:08:21,048 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o 2022-12-04T15:08:21,159 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-04T15:08:21,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o 2022-12-04T15:08:21,321 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-04T15:08:21,322 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:21,322 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-04T15:08:21,322 | ^ 2022-12-04T15:08:21,455 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-04T15:08:21,456 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o 2022-12-04T15:08:21,667 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-04T15:08:21,668 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o 2022-12-04T15:08:21,734 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-04T15:08:21,735 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o 2022-12-04T15:08:21,950 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-04T15:08:21,951 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o 2022-12-04T15:08:22,468 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-04T15:08:22,469 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o 2022-12-04T15:08:22,545 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-04T15:08:22,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o 2022-12-04T15:08:22,771 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-04T15:08:22,772 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o 2022-12-04T15:08:23,137 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-04T15:08:23,138 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o 2022-12-04T15:08:23,294 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-04T15:08:23,295 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o 2022-12-04T15:08:23,413 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-04T15:08:23,414 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o 2022-12-04T15:08:23,526 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-04T15:08:23,526 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-04T15:08:23,527 652 | for (i = 0; i < a; i++) 2022-12-04T15:08:23,527 | ^ 2022-12-04T15:08:23,886 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-04T15:08:23,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o 2022-12-04T15:08:23,977 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-04T15:08:23,978 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o 2022-12-04T15:08:24,131 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-04T15:08:24,132 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o 2022-12-04T15:08:24,183 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-04T15:08:24,184 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,184 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-04T15:08:24,184 | ^~ 2022-12-04T15:08:24,194 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-04T15:08:24,194 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,195 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-04T15:08:24,195 | ^ 2022-12-04T15:08:24,199 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-04T15:08:24,199 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,199 862 | if (n > ns->plen) ns->plen = n; 2022-12-04T15:08:24,200 | ^ 2022-12-04T15:08:24,202 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,202 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-04T15:08:24,202 | ^ 2022-12-04T15:08:24,203 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-04T15:08:24,203 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,204 941 | if (n > ns->slen) ns->slen = n; 2022-12-04T15:08:24,204 | ^ 2022-12-04T15:08:24,206 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,206 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-04T15:08:24,206 | ^ 2022-12-04T15:08:24,211 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-04T15:08:24,212 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,212 1149 | for (i = 0; i < ns->nprimary; i++) 2022-12-04T15:08:24,213 | ^ 2022-12-04T15:08:24,214 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,214 1167 | for (i = 0; i < ns->nprimary; i++) 2022-12-04T15:08:24,215 | ^ 2022-12-04T15:08:24,216 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,216 1187 | for (i = 0; i < ns->nsecondary; i++) 2022-12-04T15:08:24,217 | ^ 2022-12-04T15:08:24,218 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,218 1204 | for (i = 0; i < ns->nsecondary; i++) 2022-12-04T15:08:24,219 | ^ 2022-12-04T15:08:24,222 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-04T15:08:24,222 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,223 1253 | for (i = 0; i < ns->nprimary; i++) 2022-12-04T15:08:24,223 | ^ 2022-12-04T15:08:24,224 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,224 1259 | for (i = 0; i < ns->nsecondary; i++) 2022-12-04T15:08:24,225 | ^ 2022-12-04T15:08:24,229 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-04T15:08:24,230 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,230 1351 | for (i = 0; i < ns->nprimary; i++) { 2022-12-04T15:08:24,231 | ^ 2022-12-04T15:08:24,232 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,232 1370 | for (i = 0; i < ns->nsecondary; i++) 2022-12-04T15:08:24,232 | ^ 2022-12-04T15:08:24,233 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,234 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-04T15:08:24,234 | ^ 2022-12-04T15:08:24,234 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,235 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-04T15:08:24,235 | ^ 2022-12-04T15:08:24,236 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:24,236 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-04T15:08:24,236 | ^ 2022-12-04T15:08:24,255 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-04T15:08:24,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o 2022-12-04T15:08:24,545 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-04T15:08:24,546 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o 2022-12-04T15:08:24,575 generating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-12-04T15:08:24,576 creating build/temp.linux-armv7l-cpython-39/build 2022-12-04T15:08:24,577 creating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39 2022-12-04T15:08:24,579 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-12-04T15:08:24,839 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-04T15:08:24,841 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:24,841 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-04T15:08:24,841 | ^~ 2022-12-04T15:08:24,940 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-04T15:08:24,941 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o 2022-12-04T15:08:25,168 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-04T15:08:25,168 vendor/easel/esl_regexp.c:804:18: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:25,169 804 | *flagp |= flags&HASWIDTH; 2022-12-04T15:08:25,169 | ^ 2022-12-04T15:08:26,095 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-04T15:08:26,096 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o 2022-12-04T15:08:26,234 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-04T15:08:26,235 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o 2022-12-04T15:08:26,293 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-04T15:08:26,293 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:26,293 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-04T15:08:26,294 | ^~ 2022-12-04T15:08:26,405 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-04T15:08:26,405 15 | static double stopwatch_getRealTime(void); 2022-12-04T15:08:26,406 | ^~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:26,561 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-04T15:08:26,562 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o 2022-12-04T15:08:26,849 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-04T15:08:26,849 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T15:08:26,850 136 | return status; 2022-12-04T15:08:26,850 | ^~~~~~ 2022-12-04T15:08:27,716 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-04T15:08:27,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o 2022-12-04T15:08:28,043 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-04T15:08:28,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o 2022-12-04T15:08:28,664 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-04T15:08:28,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o 2022-12-04T15:08:29,277 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libeasel.a build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-12-04T15:08:29,482 generating build/temp.linux-armv7l-cpython-39/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-39/p7_hmmfile.c 2022-12-04T15:08:29,486 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-04T15:08:29,486 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-04T15:08:29,487 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-12-04T15:08:29,488 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-04T15:08:29,488 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-04T15:08:29,489 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-12-04T15:08:29,489 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o 2022-12-04T15:08:29,494 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o 2022-12-04T15:08:29,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o 2022-12-04T15:08:29,503 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o 2022-12-04T15:08:29,711 In file included from vendor/hmmer/src/build.c:32: 2022-12-04T15:08:29,711 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:29,712 829 | #error "No vector implementation enabled" 2022-12-04T15:08:29,712 | ^~~~~ 2022-12-04T15:08:29,712 In file included from vendor/hmmer/src/errors.c:19: 2022-12-04T15:08:29,712 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:29,712 829 | #error "No vector implementation enabled" 2022-12-04T15:08:29,713 | ^~~~~ 2022-12-04T15:08:29,713 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,713 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:29,713 | ^~~~~~ 2022-12-04T15:08:29,713 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,714 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:29,714 | ^~~~~~ 2022-12-04T15:08:29,715 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,715 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:29,716 | ^~~~~~ 2022-12-04T15:08:29,716 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,716 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:29,716 | ^~~~~~ 2022-12-04T15:08:29,717 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,717 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:29,718 | ^~~~~~ 2022-12-04T15:08:29,718 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,719 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:29,719 | ^~~~~~ 2022-12-04T15:08:29,719 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,720 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:29,725 | ^~~~~~ 2022-12-04T15:08:29,725 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,725 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:29,726 | ^~~~~~ 2022-12-04T15:08:29,726 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-04T15:08:29,726 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:29,726 829 | #error "No vector implementation enabled" 2022-12-04T15:08:29,726 | ^~~~~ 2022-12-04T15:08:29,727 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,727 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:29,727 | ^~~~~~ 2022-12-04T15:08:29,728 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,728 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:29,728 | ^~~~~~ 2022-12-04T15:08:29,729 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,729 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:29,729 | ^~~~~~ 2022-12-04T15:08:29,730 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,730 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:29,751 | ^~~~~~ 2022-12-04T15:08:29,751 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,752 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:29,752 | ^~~~~~~~~~~ 2022-12-04T15:08:29,752 | P7_PROFILE 2022-12-04T15:08:29,752 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,752 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:29,753 | ^~~~~~~~~~~ 2022-12-04T15:08:29,753 | P7_PROFILE 2022-12-04T15:08:29,754 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,754 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:29,754 | ^~~~~~~~~~~ 2022-12-04T15:08:29,755 | P7_PROFILE 2022-12-04T15:08:29,755 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,755 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:29,756 | ^~~~~~~~~~~ 2022-12-04T15:08:29,756 | P7_PROFILE 2022-12-04T15:08:29,756 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,757 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:29,757 | ^~~~~~~~~~~ 2022-12-04T15:08:29,758 | P7_PROFILE 2022-12-04T15:08:29,758 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-04T15:08:29,759 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:29,759 829 | #error "No vector implementation enabled" 2022-12-04T15:08:29,760 | ^~~~~ 2022-12-04T15:08:29,760 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,760 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:29,761 | ^~~~~~~~~~~ 2022-12-04T15:08:29,762 | P7_PROFILE 2022-12-04T15:08:29,763 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,763 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:29,763 | ^~~~~~~~~~~ 2022-12-04T15:08:29,763 | P7_PROFILE 2022-12-04T15:08:29,764 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,764 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:29,764 | ^~~~~~~~~~~ 2022-12-04T15:08:29,764 | P7_PROFILE 2022-12-04T15:08:29,765 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,765 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:29,766 | ^~~~~~ 2022-12-04T15:08:29,766 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,767 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:29,767 | ^~~~~~ 2022-12-04T15:08:29,767 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,767 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:29,768 | ^~~~~~ 2022-12-04T15:08:29,768 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:29,768 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:29,769 | ^~~~~~ 2022-12-04T15:08:29,769 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,770 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:29,770 | ^~~~~~~~~~~ 2022-12-04T15:08:29,770 | P7_PROFILE 2022-12-04T15:08:29,771 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,771 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:29,771 | ^~~~~~~~~~~ 2022-12-04T15:08:29,771 | P7_PROFILE 2022-12-04T15:08:29,772 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,772 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:29,772 | ^~~~~~~~~~~ 2022-12-04T15:08:29,773 | P7_PROFILE 2022-12-04T15:08:29,773 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,774 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:29,774 | ^~~~~~~~~~~ 2022-12-04T15:08:29,774 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,774 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:29,775 | ^~~~~~~~~~~ 2022-12-04T15:08:29,775 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,775 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:29,776 | ^~~~~~~~~~~ 2022-12-04T15:08:29,776 | P7_PROFILE 2022-12-04T15:08:29,777 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,777 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:29,777 | ^~~~~~~~~~~ 2022-12-04T15:08:29,777 | P7_PROFILE 2022-12-04T15:08:29,778 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,778 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:29,778 | ^~~~~~~~~~~ 2022-12-04T15:08:29,779 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,779 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:29,780 | ^~~~~~~~~~~ 2022-12-04T15:08:29,781 | P7_PROFILE 2022-12-04T15:08:29,782 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,782 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:29,782 | ^~~~~~~~~~~ 2022-12-04T15:08:29,783 | P7_PROFILE 2022-12-04T15:08:29,783 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,783 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:29,783 | ^~~~~~~~~~~ 2022-12-04T15:08:29,784 | P7_PROFILE 2022-12-04T15:08:29,784 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,784 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:29,785 | ^~~~~~~~~~~ 2022-12-04T15:08:29,786 | P7_PROFILE 2022-12-04T15:08:29,786 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,786 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:29,786 | ^~~~~~~~~~~ 2022-12-04T15:08:29,787 | P7_PROFILE 2022-12-04T15:08:29,787 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,787 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,788 | ^~~~~~~~~~~ 2022-12-04T15:08:29,789 | P7_PROFILE 2022-12-04T15:08:29,789 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,789 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:29,790 | ^~~~~~~~~~~ 2022-12-04T15:08:29,790 | P7_PROFILE 2022-12-04T15:08:29,790 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,790 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:29,790 | ^~~~~~~~~~~ 2022-12-04T15:08:29,790 | P7_PROFILE 2022-12-04T15:08:29,791 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,791 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,791 | ^~~~~~~~~~~ 2022-12-04T15:08:29,791 | P7_PROFILE 2022-12-04T15:08:29,792 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,792 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:29,792 | ^~~~~~~~~~~ 2022-12-04T15:08:29,793 | P7_PROFILE 2022-12-04T15:08:29,793 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,793 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,794 | ^~~~~~ 2022-12-04T15:08:29,794 | P7_GMX 2022-12-04T15:08:29,794 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,794 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,795 | ^~~~~~ 2022-12-04T15:08:29,795 | P7_GMX 2022-12-04T15:08:29,795 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,795 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,796 | ^~~~~~~~~~~ 2022-12-04T15:08:29,796 | P7_PROFILE 2022-12-04T15:08:29,796 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,797 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:29,797 | ^~~~~~~~~~~ 2022-12-04T15:08:29,797 | P7_PROFILE 2022-12-04T15:08:29,797 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,798 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,798 | ^~~~~~ 2022-12-04T15:08:29,798 | P7_GMX 2022-12-04T15:08:29,798 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,799 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,799 | ^~~~~~ 2022-12-04T15:08:29,800 | P7_GMX 2022-12-04T15:08:29,800 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,800 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,800 | ^~~~~~ 2022-12-04T15:08:29,801 | P7_GMX 2022-12-04T15:08:29,801 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,801 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:29,801 | ^~~~~~~~~~~ 2022-12-04T15:08:29,801 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,801 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,802 | ^~~~~~ 2022-12-04T15:08:29,802 | P7_GMX 2022-12-04T15:08:29,802 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,802 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,803 | ^~~~~~ 2022-12-04T15:08:29,803 | P7_GMX 2022-12-04T15:08:29,803 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,804 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,804 | ^~~~~~ 2022-12-04T15:08:29,804 | P7_GMX 2022-12-04T15:08:29,804 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,804 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:29,805 | ^~~~~~~~~~~ 2022-12-04T15:08:29,805 | P7_PROFILE 2022-12-04T15:08:29,805 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,805 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,806 | ^~~~~~ 2022-12-04T15:08:29,806 | P7_GMX 2022-12-04T15:08:29,806 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,806 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,807 | ^~~~~~ 2022-12-04T15:08:29,807 | P7_GMX 2022-12-04T15:08:29,807 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,807 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,808 | ^~~~~~ 2022-12-04T15:08:29,808 | P7_GMX 2022-12-04T15:08:29,808 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,808 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:29,809 | ^~~~~~~~~~~ 2022-12-04T15:08:29,809 | P7_PROFILE 2022-12-04T15:08:29,809 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,809 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:29,809 | ^~~~~~~~~~~ 2022-12-04T15:08:29,810 | P7_PROFILE 2022-12-04T15:08:29,810 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,810 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,810 | ^~~~~~~~~~~ 2022-12-04T15:08:29,811 | P7_PROFILE 2022-12-04T15:08:29,811 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,811 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:29,812 | ^~~~~~~~~~~ 2022-12-04T15:08:29,813 | P7_PROFILE 2022-12-04T15:08:29,814 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,814 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:29,815 | ^~~~~~~~~~~ 2022-12-04T15:08:29,816 | P7_PROFILE 2022-12-04T15:08:29,816 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,817 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,817 | ^~~~~~ 2022-12-04T15:08:29,817 | P7_GMX 2022-12-04T15:08:29,817 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,817 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:29,818 | ^~~~~~~~~~~ 2022-12-04T15:08:29,818 | P7_PROFILE 2022-12-04T15:08:29,818 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,819 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:29,819 | ^~~~~~~~~~~ 2022-12-04T15:08:29,819 | P7_PROFILE 2022-12-04T15:08:29,819 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,819 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,820 | ^~~~~~ 2022-12-04T15:08:29,820 | P7_GMX 2022-12-04T15:08:29,820 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,820 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:29,820 | ^~~~~~~~~~~ 2022-12-04T15:08:29,821 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,821 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:29,821 | ^~~~~~~~~~~ 2022-12-04T15:08:29,821 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,822 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:29,822 | ^~~~~~~~~~~ 2022-12-04T15:08:29,822 | P7_PROFILE 2022-12-04T15:08:29,822 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,823 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,823 | ^~~~~~ 2022-12-04T15:08:29,823 | P7_GMX 2022-12-04T15:08:29,824 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,824 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:29,824 | ^~~~~~~~~~~ 2022-12-04T15:08:29,824 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,824 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:29,825 | ^~~~~~~~~~~ 2022-12-04T15:08:29,825 | P7_PROFILE 2022-12-04T15:08:29,826 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,826 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:29,826 | ^~~~~~~~~~~ 2022-12-04T15:08:29,826 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,827 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,827 | ^~~~~~ 2022-12-04T15:08:29,827 | P7_GMX 2022-12-04T15:08:29,827 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,827 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:29,828 | ^~~~~~~~~~~ 2022-12-04T15:08:29,828 | P7_PROFILE 2022-12-04T15:08:29,828 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,828 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:29,828 | ^~~~~~~~~~~ 2022-12-04T15:08:29,829 | P7_PROFILE 2022-12-04T15:08:29,829 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,829 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:29,829 | ^~~~~~~~~~~ 2022-12-04T15:08:29,829 | P7_PROFILE 2022-12-04T15:08:29,830 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,830 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:29,830 | ^~~~~~~~~~~ 2022-12-04T15:08:29,830 | P7_PROFILE 2022-12-04T15:08:29,831 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,831 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:29,831 | ^~~~~~~~~~~ 2022-12-04T15:08:29,832 | P7_PROFILE 2022-12-04T15:08:29,832 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,832 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:29,832 | ^~~~~~~~~~~ 2022-12-04T15:08:29,832 | P7_PROFILE 2022-12-04T15:08:29,833 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:29,833 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:29,833 | ^~~~~~ 2022-12-04T15:08:29,833 | P7_GMX 2022-12-04T15:08:29,833 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,834 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:29,834 | ^~~~~~~~~~~ 2022-12-04T15:08:29,834 | P7_PROFILE 2022-12-04T15:08:29,834 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,835 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:29,835 | ^~~~~~~~~~~ 2022-12-04T15:08:29,835 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,835 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:29,836 | ^~~~~~~~~~~ 2022-12-04T15:08:29,836 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,836 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:29,836 | ^~~~~~~~~~~ 2022-12-04T15:08:29,836 | P7_PROFILE 2022-12-04T15:08:29,837 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,837 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:29,837 | ^~~~~~~~~~~ 2022-12-04T15:08:29,837 | P7_PROFILE 2022-12-04T15:08:29,838 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-04T15:08:29,838 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,838 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:29,838 | ^~~~~~~~~~~ 2022-12-04T15:08:29,838 | P7_PROFILE 2022-12-04T15:08:29,839 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,839 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:29,839 | ^~~~~~~~~~~ 2022-12-04T15:08:29,839 | P7_PROFILE 2022-12-04T15:08:29,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o 2022-12-04T15:08:29,840 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,840 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:29,840 | ^~~~~~~~~~~ 2022-12-04T15:08:29,840 | P7_PROFILE 2022-12-04T15:08:29,840 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,841 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:29,841 | ^~~~~~~~~~~ 2022-12-04T15:08:29,841 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:29,841 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:29,842 | ^~~~~~~~~~~ 2022-12-04T15:08:29,842 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,842 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:29,842 | ^~~~~~~~~~~ 2022-12-04T15:08:29,842 | P7_PROFILE 2022-12-04T15:08:29,843 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,843 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:29,843 | ^~~~~~~~~~~ 2022-12-04T15:08:29,843 | P7_PROFILE 2022-12-04T15:08:29,843 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,844 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:29,844 | ^~~~~~~~~~~ 2022-12-04T15:08:29,845 | P7_PROFILE 2022-12-04T15:08:29,845 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,846 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:29,846 | ^~~~~~~~~~~ 2022-12-04T15:08:29,846 | P7_PROFILE 2022-12-04T15:08:29,846 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:29,846 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:29,847 | ^~~~~~~~~~~ 2022-12-04T15:08:29,847 | P7_PROFILE 2022-12-04T15:08:29,847 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-04T15:08:29,847 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o 2022-12-04T15:08:29,847 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-04T15:08:29,848 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-04T15:08:29,865 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-04T15:08:29,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o 2022-12-04T15:08:29,928 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-04T15:08:29,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-04T15:08:29,965 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-04T15:08:29,966 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o 2022-12-04T15:08:30,037 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-04T15:08:30,038 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o 2022-12-04T15:08:30,039 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-04T15:08:30,040 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,040 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,040 | ^~~~~ 2022-12-04T15:08:30,044 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,045 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,045 | ^~~~~~ 2022-12-04T15:08:30,045 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,046 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,046 | ^~~~~~ 2022-12-04T15:08:30,046 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,046 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,047 | ^~~~~~ 2022-12-04T15:08:30,047 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,047 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,047 | ^~~~~~ 2022-12-04T15:08:30,048 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,048 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,049 | ^~~~~~~~~~~ 2022-12-04T15:08:30,049 | P7_PROFILE 2022-12-04T15:08:30,050 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,051 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,051 | ^~~~~~~~~~~ 2022-12-04T15:08:30,052 | P7_PROFILE 2022-12-04T15:08:30,053 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,054 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,054 | ^~~~~~~~~~~ 2022-12-04T15:08:30,054 | P7_PROFILE 2022-12-04T15:08:30,056 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,056 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,056 | ^~~~~~~~~~~ 2022-12-04T15:08:30,056 | P7_PROFILE 2022-12-04T15:08:30,058 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,058 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,059 | ^~~~~~~~~~~ 2022-12-04T15:08:30,062 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,062 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,063 | ^~~~~~~~~~~ 2022-12-04T15:08:30,063 | P7_PROFILE 2022-12-04T15:08:30,066 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,067 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,067 | ^~~~~~~~~~~ 2022-12-04T15:08:30,067 | P7_PROFILE 2022-12-04T15:08:30,070 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,071 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,071 | ^~~~~~~~~~~ 2022-12-04T15:08:30,071 | P7_PROFILE 2022-12-04T15:08:30,073 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-04T15:08:30,074 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o 2022-12-04T15:08:30,083 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,084 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,084 | ^~~~~~ 2022-12-04T15:08:30,084 | P7_GMX 2022-12-04T15:08:30,089 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,089 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,090 | ^~~~~~ 2022-12-04T15:08:30,090 | P7_GMX 2022-12-04T15:08:30,096 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,096 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,096 | ^~~~~~ 2022-12-04T15:08:30,097 | P7_GMX 2022-12-04T15:08:30,102 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,103 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,103 | ^~~~~~ 2022-12-04T15:08:30,103 | P7_GMX 2022-12-04T15:08:30,111 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,112 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,112 | ^~~~~~~~~~~ 2022-12-04T15:08:30,112 | P7_PROFILE 2022-12-04T15:08:30,118 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,118 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,118 | ^~~~~~~~~~~ 2022-12-04T15:08:30,119 | P7_PROFILE 2022-12-04T15:08:30,123 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-04T15:08:30,123 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,123 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,124 | ^~~~~ 2022-12-04T15:08:30,124 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,124 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,124 | ^~~~~~ 2022-12-04T15:08:30,125 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,125 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,125 | ^~~~~~ 2022-12-04T15:08:30,125 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,125 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,125 | ^~~~~~ 2022-12-04T15:08:30,126 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,126 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,127 | ^~~~~~ 2022-12-04T15:08:30,127 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,127 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,128 | ^~~~~~~~~~~ 2022-12-04T15:08:30,128 | P7_PROFILE 2022-12-04T15:08:30,129 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,129 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,129 | ^~~~~~~~~~~ 2022-12-04T15:08:30,130 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,131 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,131 | ^~~~~~~~~~~ 2022-12-04T15:08:30,132 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,132 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,133 | ^~~~~~~~~~~ 2022-12-04T15:08:30,133 | P7_PROFILE 2022-12-04T15:08:30,134 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,134 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,135 | ^~~~~~~~~~~ 2022-12-04T15:08:30,135 | P7_PROFILE 2022-12-04T15:08:30,136 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,137 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,137 | ^~~~~~~~~~~ 2022-12-04T15:08:30,138 | P7_PROFILE 2022-12-04T15:08:30,143 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,144 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,144 | ^~~~~~~~~~~ 2022-12-04T15:08:30,145 | P7_PROFILE 2022-12-04T15:08:30,145 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,145 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,146 | ^~~~~~~~~~~ 2022-12-04T15:08:30,147 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,147 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,148 | ^~~~~~~~~~~ 2022-12-04T15:08:30,148 | P7_PROFILE 2022-12-04T15:08:30,149 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,149 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,150 | ^~~~~~~~~~~ 2022-12-04T15:08:30,154 | P7_PROFILE 2022-12-04T15:08:30,158 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,161 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,161 | ^~~~~~~~~~~ 2022-12-04T15:08:30,161 | P7_PROFILE 2022-12-04T15:08:30,162 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,163 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,163 | ^~~~~~~~~~~ 2022-12-04T15:08:30,163 | P7_PROFILE 2022-12-04T15:08:30,164 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,164 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,164 | ^~~~~~~~~~~ 2022-12-04T15:08:30,165 | P7_PROFILE 2022-12-04T15:08:30,165 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,165 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,165 | ^~~~~~ 2022-12-04T15:08:30,165 | P7_GMX 2022-12-04T15:08:30,166 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,166 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,166 | ^~~~~~ 2022-12-04T15:08:30,166 | P7_GMX 2022-12-04T15:08:30,167 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,167 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,167 | ^~~~~~ 2022-12-04T15:08:30,167 | P7_GMX 2022-12-04T15:08:30,168 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,168 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,168 | ^~~~~~ 2022-12-04T15:08:30,168 | P7_GMX 2022-12-04T15:08:30,168 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,168 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,169 | ^~~~~~~~~~~ 2022-12-04T15:08:30,169 | P7_PROFILE 2022-12-04T15:08:30,170 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,170 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,170 | ^~~~~~~~~~~ 2022-12-04T15:08:30,170 | P7_PROFILE 2022-12-04T15:08:30,173 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,178 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,179 | ^~~~~~~~~~~ 2022-12-04T15:08:30,181 | P7_PROFILE 2022-12-04T15:08:30,183 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,183 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,183 | ^~~~~~~~~~~ 2022-12-04T15:08:30,184 | P7_PROFILE 2022-12-04T15:08:30,184 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,185 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,185 | ^~~~~~~~~~~ 2022-12-04T15:08:30,185 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,185 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,185 | ^~~~~~~~~~~ 2022-12-04T15:08:30,186 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,186 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,186 | ^~~~~~~~~~~ 2022-12-04T15:08:30,186 | P7_PROFILE 2022-12-04T15:08:30,186 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,187 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,187 | ^~~~~~~~~~~ 2022-12-04T15:08:30,187 | P7_PROFILE 2022-12-04T15:08:30,187 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,188 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,188 | ^~~~~~~~~~~ 2022-12-04T15:08:30,188 | P7_PROFILE 2022-12-04T15:08:30,202 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-04T15:08:30,202 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o 2022-12-04T15:08:30,212 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-04T15:08:30,213 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o 2022-12-04T15:08:30,323 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-04T15:08:30,324 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,324 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,324 | ^~~~~ 2022-12-04T15:08:30,326 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,326 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,326 | ^~~~~~ 2022-12-04T15:08:30,327 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,327 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,327 | ^~~~~~ 2022-12-04T15:08:30,328 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,328 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,329 | ^~~~~~ 2022-12-04T15:08:30,329 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,330 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,330 | ^~~~~~ 2022-12-04T15:08:30,334 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,334 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,334 | ^~~~~~~~~~~ 2022-12-04T15:08:30,334 | P7_PROFILE 2022-12-04T15:08:30,337 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,338 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,338 | ^~~~~~~~~~~ 2022-12-04T15:08:30,338 | P7_PROFILE 2022-12-04T15:08:30,338 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-04T15:08:30,339 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,339 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,339 | ^~~~~ 2022-12-04T15:08:30,340 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,340 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,340 | ^~~~~~ 2022-12-04T15:08:30,340 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,341 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,341 | ^~~~~~ 2022-12-04T15:08:30,341 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,341 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,342 | ^~~~~~ 2022-12-04T15:08:30,342 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,343 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,343 | ^~~~~~ 2022-12-04T15:08:30,344 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,345 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,345 | ^~~~~~~~~~~ 2022-12-04T15:08:30,345 | P7_PROFILE 2022-12-04T15:08:30,347 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,347 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,348 | ^~~~~~~~~~~ 2022-12-04T15:08:30,348 | P7_PROFILE 2022-12-04T15:08:30,351 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,351 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,351 | ^~~~~~~~~~~ 2022-12-04T15:08:30,352 | P7_PROFILE 2022-12-04T15:08:30,352 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,352 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,352 | ^~~~~~~~~~~ 2022-12-04T15:08:30,352 | P7_PROFILE 2022-12-04T15:08:30,353 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,353 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,353 | ^~~~~~~~~~~ 2022-12-04T15:08:30,353 | P7_PROFILE 2022-12-04T15:08:30,361 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,361 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,361 | ^~~~~~~~~~~ 2022-12-04T15:08:30,361 | P7_PROFILE 2022-12-04T15:08:30,362 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,362 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,362 | ^~~~~~~~~~~ 2022-12-04T15:08:30,363 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,363 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,363 | ^~~~~~~~~~~ 2022-12-04T15:08:30,364 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,364 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,364 | ^~~~~~~~~~~ 2022-12-04T15:08:30,364 | P7_PROFILE 2022-12-04T15:08:30,365 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,365 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,365 | ^~~~~~~~~~~ 2022-12-04T15:08:30,365 | P7_PROFILE 2022-12-04T15:08:30,366 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,366 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,366 | ^~~~~~~~~~~ 2022-12-04T15:08:30,366 | P7_PROFILE 2022-12-04T15:08:30,381 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,381 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,382 | ^~~~~~~~~~~ 2022-12-04T15:08:30,382 | P7_PROFILE 2022-12-04T15:08:30,383 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,383 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,383 | ^~~~~~ 2022-12-04T15:08:30,383 | P7_GMX 2022-12-04T15:08:30,384 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,384 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,384 | ^~~~~~~~~~~ 2022-12-04T15:08:30,384 | P7_PROFILE 2022-12-04T15:08:30,384 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,385 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,385 | ^~~~~~ 2022-12-04T15:08:30,385 | P7_GMX 2022-12-04T15:08:30,386 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,386 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,387 | ^~~~~~~~~~~ 2022-12-04T15:08:30,387 | P7_PROFILE 2022-12-04T15:08:30,387 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,387 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,387 | ^~~~~~ 2022-12-04T15:08:30,387 | P7_GMX 2022-12-04T15:08:30,388 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,388 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,388 | ^~~~~~ 2022-12-04T15:08:30,388 | P7_GMX 2022-12-04T15:08:30,389 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,389 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,390 | ^~~~~~ 2022-12-04T15:08:30,390 | P7_GMX 2022-12-04T15:08:30,394 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,397 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,399 | ^~~~~~ 2022-12-04T15:08:30,400 | P7_GMX 2022-12-04T15:08:30,400 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,406 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,406 | ^~~~~~~~~~~ 2022-12-04T15:08:30,407 | P7_PROFILE 2022-12-04T15:08:30,408 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,408 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,408 | ^~~~~~ 2022-12-04T15:08:30,409 | P7_GMX 2022-12-04T15:08:30,409 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,409 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,409 | ^~~~~~~~~~~ 2022-12-04T15:08:30,410 | P7_PROFILE 2022-12-04T15:08:30,410 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,410 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,410 | ^~~~~~ 2022-12-04T15:08:30,411 | P7_GMX 2022-12-04T15:08:30,411 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,411 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,412 | ^~~~~~~~~~~ 2022-12-04T15:08:30,412 | P7_PROFILE 2022-12-04T15:08:30,412 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,412 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,412 | ^~~~~~~~~~~ 2022-12-04T15:08:30,413 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,413 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,413 | ^~~~~~~~~~~ 2022-12-04T15:08:30,414 | P7_PROFILE 2022-12-04T15:08:30,415 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,415 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,416 | ^~~~~~~~~~~ 2022-12-04T15:08:30,416 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,416 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,416 | ^~~~~~~~~~~ 2022-12-04T15:08:30,417 | P7_PROFILE 2022-12-04T15:08:30,417 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,417 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,417 | ^~~~~~~~~~~ 2022-12-04T15:08:30,417 | P7_PROFILE 2022-12-04T15:08:30,418 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,418 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,418 | ^~~~~~~~~~~ 2022-12-04T15:08:30,418 | P7_PROFILE 2022-12-04T15:08:30,419 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,419 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,419 | ^~~~~~~~~~~ 2022-12-04T15:08:30,419 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,420 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,420 | ^~~~~~~~~~~ 2022-12-04T15:08:30,420 | P7_PROFILE 2022-12-04T15:08:30,420 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,422 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,422 | ^~~~~~~~~~~ 2022-12-04T15:08:30,427 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,427 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,431 | ^~~~~~~~~~~ 2022-12-04T15:08:30,431 | P7_PROFILE 2022-12-04T15:08:30,432 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,432 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,432 | ^~~~~~~~~~~ 2022-12-04T15:08:30,433 | P7_PROFILE 2022-12-04T15:08:30,433 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,433 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,433 | ^~~~~~~~~~~ 2022-12-04T15:08:30,434 | P7_PROFILE 2022-12-04T15:08:30,434 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,434 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,434 | ^~~~~~~~~~~ 2022-12-04T15:08:30,435 | P7_PROFILE 2022-12-04T15:08:30,435 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-04T15:08:30,435 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o 2022-12-04T15:08:30,435 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-04T15:08:30,436 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o 2022-12-04T15:08:30,463 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-04T15:08:30,464 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,464 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,464 | ^~~~~ 2022-12-04T15:08:30,464 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-04T15:08:30,464 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,464 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,465 | ^~~~~ 2022-12-04T15:08:30,465 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,465 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,465 | ^~~~~~ 2022-12-04T15:08:30,465 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,465 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,465 | ^~~~~~ 2022-12-04T15:08:30,466 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,466 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,466 | ^~~~~~ 2022-12-04T15:08:30,466 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,467 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,468 | ^~~~~~ 2022-12-04T15:08:30,468 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,468 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,468 | ^~~~~~ 2022-12-04T15:08:30,469 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,469 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,469 | ^~~~~~ 2022-12-04T15:08:30,469 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,470 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,471 | ^~~~~~ 2022-12-04T15:08:30,471 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,472 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,472 | ^~~~~~ 2022-12-04T15:08:30,472 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,472 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,472 | ^~~~~~~~~~~ 2022-12-04T15:08:30,473 | P7_PROFILE 2022-12-04T15:08:30,473 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,474 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,474 | ^~~~~~~~~~~ 2022-12-04T15:08:30,474 | P7_PROFILE 2022-12-04T15:08:30,475 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,475 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,475 | ^~~~~~~~~~~ 2022-12-04T15:08:30,475 | P7_PROFILE 2022-12-04T15:08:30,476 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,476 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,477 | ^~~~~~~~~~~ 2022-12-04T15:08:30,477 | P7_PROFILE 2022-12-04T15:08:30,477 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,478 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,478 | ^~~~~~~~~~~ 2022-12-04T15:08:30,478 | P7_PROFILE 2022-12-04T15:08:30,478 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,478 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,478 | ^~~~~~~~~~~ 2022-12-04T15:08:30,479 | P7_PROFILE 2022-12-04T15:08:30,479 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,479 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,479 | ^~~~~~~~~~~ 2022-12-04T15:08:30,479 | P7_PROFILE 2022-12-04T15:08:30,479 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,480 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,480 | ^~~~~~~~~~~ 2022-12-04T15:08:30,480 | P7_PROFILE 2022-12-04T15:08:30,480 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,480 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,491 | ^~~~~~~~~~~ 2022-12-04T15:08:30,493 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,494 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,494 | ^~~~~~~~~~~ 2022-12-04T15:08:30,496 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,496 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,498 | ^~~~~~~~~~~ 2022-12-04T15:08:30,498 | P7_PROFILE 2022-12-04T15:08:30,499 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,499 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,500 | ^~~~~~~~~~~ 2022-12-04T15:08:30,504 | P7_PROFILE 2022-12-04T15:08:30,505 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,506 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,506 | ^~~~~~~~~~~ 2022-12-04T15:08:30,506 | P7_PROFILE 2022-12-04T15:08:30,507 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,507 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,507 | ^~~~~~~~~~~ 2022-12-04T15:08:30,508 | P7_PROFILE 2022-12-04T15:08:30,511 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,511 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,511 | ^~~~~~~~~~~ 2022-12-04T15:08:30,512 | P7_PROFILE 2022-12-04T15:08:30,512 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,513 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,513 | ^~~~~~~~~~~ 2022-12-04T15:08:30,513 | P7_PROFILE 2022-12-04T15:08:30,513 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,513 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,514 | ^~~~~~ 2022-12-04T15:08:30,514 | P7_GMX 2022-12-04T15:08:30,514 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,515 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,515 | ^~~~~~ 2022-12-04T15:08:30,515 | P7_GMX 2022-12-04T15:08:30,515 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,516 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,516 | ^~~~~~ 2022-12-04T15:08:30,517 | P7_GMX 2022-12-04T15:08:30,517 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,518 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,518 | ^~~~~~ 2022-12-04T15:08:30,518 | P7_GMX 2022-12-04T15:08:30,518 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,518 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,519 | ^~~~~~ 2022-12-04T15:08:30,519 | P7_GMX 2022-12-04T15:08:30,519 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,520 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,520 | ^~~~~~ 2022-12-04T15:08:30,520 | P7_GMX 2022-12-04T15:08:30,521 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,523 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,525 | ^~~~~~ 2022-12-04T15:08:30,527 | P7_GMX 2022-12-04T15:08:30,530 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,532 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,534 | ^~~~~~ 2022-12-04T15:08:30,534 | P7_GMX 2022-12-04T15:08:30,535 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,535 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,536 | ^~~~~~~~~~~ 2022-12-04T15:08:30,536 | P7_PROFILE 2022-12-04T15:08:30,536 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,537 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,537 | ^~~~~~~~~~~ 2022-12-04T15:08:30,537 | P7_PROFILE 2022-12-04T15:08:30,537 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,538 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,538 | ^~~~~~~~~~~ 2022-12-04T15:08:30,539 | P7_PROFILE 2022-12-04T15:08:30,539 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,539 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,539 | ^~~~~~~~~~~ 2022-12-04T15:08:30,540 | P7_PROFILE 2022-12-04T15:08:30,540 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,540 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,540 | ^~~~~~~~~~~ 2022-12-04T15:08:30,542 | P7_PROFILE 2022-12-04T15:08:30,548 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,551 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,552 | ^~~~~~~~~~~ 2022-12-04T15:08:30,552 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,552 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,552 | ^~~~~~~~~~~ 2022-12-04T15:08:30,553 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,553 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,553 | ^~~~~~~~~~~ 2022-12-04T15:08:30,554 | P7_PROFILE 2022-12-04T15:08:30,554 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,554 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,555 | ^~~~~~~~~~~ 2022-12-04T15:08:30,555 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,555 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,556 | ^~~~~~~~~~~ 2022-12-04T15:08:30,556 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,557 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,557 | ^~~~~~~~~~~ 2022-12-04T15:08:30,557 | P7_PROFILE 2022-12-04T15:08:30,557 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,563 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,573 | ^~~~~~~~~~~ 2022-12-04T15:08:30,574 | P7_PROFILE 2022-12-04T15:08:30,574 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,575 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,575 | ^~~~~~~~~~~ 2022-12-04T15:08:30,576 | P7_PROFILE 2022-12-04T15:08:30,576 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,576 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,576 | ^~~~~~~~~~~ 2022-12-04T15:08:30,577 | P7_PROFILE 2022-12-04T15:08:30,577 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,577 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,578 | ^~~~~~~~~~~ 2022-12-04T15:08:30,578 | P7_PROFILE 2022-12-04T15:08:30,578 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,579 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,579 | ^~~~~~~~~~~ 2022-12-04T15:08:30,579 | P7_PROFILE 2022-12-04T15:08:30,580 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-04T15:08:30,580 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,580 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-04T15:08:30,582 | ^~~~~~ 2022-12-04T15:08:30,582 | P7_GMX 2022-12-04T15:08:30,583 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-04T15:08:30,583 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,583 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-04T15:08:30,584 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,584 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,584 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-04T15:08:30,585 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,585 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,585 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-04T15:08:30,586 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,586 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,586 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-04T15:08:30,586 | ^~~~~~ 2022-12-04T15:08:30,587 | P7_GMX 2022-12-04T15:08:30,587 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,587 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-04T15:08:30,588 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,588 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,588 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-04T15:08:30,588 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,589 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,589 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-04T15:08:30,589 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,590 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,590 244 | P7_OPROFILE *om = NULL; 2022-12-04T15:08:30,590 | ^~~~~~~~~~~ 2022-12-04T15:08:30,590 | P7_PROFILE 2022-12-04T15:08:30,591 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:30,591 253 | if (ser_size != ptr - (*buf + *n)){ 2022-12-04T15:08:30,591 | ^~ 2022-12-04T15:08:30,591 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-04T15:08:30,591 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,592 341 | ret_obj->envsc = *((float *) &host_32bit); 2022-12-04T15:08:30,592 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,592 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,593 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-04T15:08:30,593 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,593 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,594 353 | ret_obj->dombias = *((float *) &host_32bit); 2022-12-04T15:08:30,594 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,594 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,594 359 | ret_obj->oasc = *((float *) &host_32bit); 2022-12-04T15:08:30,594 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,594 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,595 365 | ret_obj->bitscore = *((float *) &host_32bit); 2022-12-04T15:08:30,595 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,595 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,595 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T15:08:30,595 | ^~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,596 | p7_profile_Create 2022-12-04T15:08:30,596 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T15:08:30,596 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T15:08:30,596 | ^ 2022-12-04T15:08:30,597 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,597 371 | ret_obj->lnP = *((double *) &host_64bit); 2022-12-04T15:08:30,597 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,597 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T15:08:30,598 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-04T15:08:30,598 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,598 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:30,598 404 | if(ptr - (buf + *n) != obj_size){ 2022-12-04T15:08:30,598 | ^~ 2022-12-04T15:08:30,599 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,599 258 | p7_oprofile_Convert(gm, om); 2022-12-04T15:08:30,599 | ^~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,599 | p7_profile_Compare 2022-12-04T15:08:30,600 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,600 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T15:08:30,600 | ^~~~~~~~~~~~~ 2022-12-04T15:08:30,601 | p7_gmx_Create 2022-12-04T15:08:30,601 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T15:08:30,602 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T15:08:30,602 | ^ 2022-12-04T15:08:30,602 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T15:08:30,603 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T15:08:30,603 | ^ 2022-12-04T15:08:30,603 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,603 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-04T15:08:30,604 | ^~~~~~~~~~~~~ 2022-12-04T15:08:30,604 | p7_gmx_GrowTo 2022-12-04T15:08:30,604 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,604 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-04T15:08:30,604 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,605 | p7_ReconfigLength 2022-12-04T15:08:30,605 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,605 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-04T15:08:30,605 | ^~~~~~~~~~ 2022-12-04T15:08:30,606 | p7_GForward 2022-12-04T15:08:30,607 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,608 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-04T15:08:30,608 | ^~~~~~~~~~~ 2022-12-04T15:08:30,608 | p7_GBackward 2022-12-04T15:08:30,608 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,609 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-04T15:08:30,609 | ^~~~~~~~~~~ 2022-12-04T15:08:30,609 | p7_GDecoding 2022-12-04T15:08:30,609 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,609 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-04T15:08:30,610 | ^~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,610 | p7_GOptimalAccuracy 2022-12-04T15:08:30,610 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-04T15:08:30,610 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o 2022-12-04T15:08:30,610 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,611 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-04T15:08:30,611 | ^~~~~~~~~~ 2022-12-04T15:08:30,611 | p7_GOATrace 2022-12-04T15:08:30,611 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,612 346 | p7_omx_Reuse(oxf); 2022-12-04T15:08:30,612 | ^~~~~~~~~~~~ 2022-12-04T15:08:30,612 | p7_gmx_Reuse 2022-12-04T15:08:30,612 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,612 357 | p7_omx_Destroy(oxf); 2022-12-04T15:08:30,613 | ^~~~~~~~~~~~~~ 2022-12-04T15:08:30,613 | p7_gmx_Destroy 2022-12-04T15:08:30,613 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,613 363 | p7_oprofile_Destroy(om); 2022-12-04T15:08:30,613 | ^~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,613 | p7_profile_Destroy 2022-12-04T15:08:30,637 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-04T15:08:30,638 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o 2022-12-04T15:08:30,680 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-04T15:08:30,680 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,681 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,681 | ^~~~~ 2022-12-04T15:08:30,681 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,682 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,682 | ^~~~~~ 2022-12-04T15:08:30,682 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,682 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,682 | ^~~~~~ 2022-12-04T15:08:30,683 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,683 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,683 | ^~~~~~ 2022-12-04T15:08:30,683 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,684 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,684 | ^~~~~~ 2022-12-04T15:08:30,686 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,686 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,687 | ^~~~~~~~~~~ 2022-12-04T15:08:30,687 | P7_PROFILE 2022-12-04T15:08:30,688 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,689 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,689 | ^~~~~~~~~~~ 2022-12-04T15:08:30,689 | P7_PROFILE 2022-12-04T15:08:30,701 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,701 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,701 | ^~~~~~~~~~~ 2022-12-04T15:08:30,701 | P7_PROFILE 2022-12-04T15:08:30,702 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,702 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,703 | ^~~~~~~~~~~ 2022-12-04T15:08:30,703 | P7_PROFILE 2022-12-04T15:08:30,703 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,703 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,704 | ^~~~~~~~~~~ 2022-12-04T15:08:30,704 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,704 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,704 | ^~~~~~~~~~~ 2022-12-04T15:08:30,705 | P7_PROFILE 2022-12-04T15:08:30,705 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,705 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,706 | ^~~~~~~~~~~ 2022-12-04T15:08:30,706 | P7_PROFILE 2022-12-04T15:08:30,706 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,706 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,707 | ^~~~~~~~~~~ 2022-12-04T15:08:30,707 | P7_PROFILE 2022-12-04T15:08:30,707 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,708 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,708 | ^~~~~~ 2022-12-04T15:08:30,708 | P7_GMX 2022-12-04T15:08:30,721 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,721 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,721 | ^~~~~~ 2022-12-04T15:08:30,721 | P7_GMX 2022-12-04T15:08:30,722 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,722 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,722 | ^~~~~~ 2022-12-04T15:08:30,723 | P7_GMX 2022-12-04T15:08:30,723 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-04T15:08:30,723 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,724 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,724 | ^~~~~ 2022-12-04T15:08:30,724 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,724 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,725 | ^~~~~~ 2022-12-04T15:08:30,725 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,725 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,725 | ^~~~~~ 2022-12-04T15:08:30,725 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,726 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,726 | ^~~~~~ 2022-12-04T15:08:30,726 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,726 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,726 | ^~~~~~ 2022-12-04T15:08:30,727 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,727 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,731 | ^~~~~~ 2022-12-04T15:08:30,731 | P7_GMX 2022-12-04T15:08:30,731 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,732 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,732 | ^~~~~~~~~~~ 2022-12-04T15:08:30,732 | P7_PROFILE 2022-12-04T15:08:30,732 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,732 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,732 | ^~~~~~~~~~~ 2022-12-04T15:08:30,733 | P7_PROFILE 2022-12-04T15:08:30,733 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,733 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,733 | ^~~~~~~~~~~ 2022-12-04T15:08:30,734 | P7_PROFILE 2022-12-04T15:08:30,734 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,734 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,734 | ^~~~~~~~~~~ 2022-12-04T15:08:30,735 | P7_PROFILE 2022-12-04T15:08:30,735 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,736 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,736 | ^~~~~~~~~~~ 2022-12-04T15:08:30,736 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,736 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,737 | ^~~~~~~~~~~ 2022-12-04T15:08:30,737 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,737 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,737 | ^~~~~~~~~~~ 2022-12-04T15:08:30,737 | P7_PROFILE 2022-12-04T15:08:30,737 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,738 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,738 | ^~~~~~~~~~~ 2022-12-04T15:08:30,738 | P7_PROFILE 2022-12-04T15:08:30,738 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,738 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,751 | ^~~~~~~~~~~ 2022-12-04T15:08:30,751 | P7_PROFILE 2022-12-04T15:08:30,751 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,752 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,752 | ^~~~~~~~~~~ 2022-12-04T15:08:30,752 | P7_PROFILE 2022-12-04T15:08:30,753 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,753 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,753 | ^~~~~~~~~~~ 2022-12-04T15:08:30,753 | P7_PROFILE 2022-12-04T15:08:30,753 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,754 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,754 | ^~~~~~~~~~~ 2022-12-04T15:08:30,754 | P7_PROFILE 2022-12-04T15:08:30,754 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,754 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,755 | ^~~~~~~~~~~ 2022-12-04T15:08:30,755 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,755 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,755 | ^~~~~~~~~~~ 2022-12-04T15:08:30,756 | P7_PROFILE 2022-12-04T15:08:30,761 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,761 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,761 | ^~~~~~~~~~~ 2022-12-04T15:08:30,761 | P7_PROFILE 2022-12-04T15:08:30,762 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-04T15:08:30,762 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,762 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,762 | ^~~~~~~~~~~ 2022-12-04T15:08:30,762 | P7_PROFILE 2022-12-04T15:08:30,763 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o 2022-12-04T15:08:30,765 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,765 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,765 | ^~~~~~ 2022-12-04T15:08:30,765 | P7_GMX 2022-12-04T15:08:30,768 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,768 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,769 | ^~~~~~ 2022-12-04T15:08:30,769 | P7_GMX 2022-12-04T15:08:30,772 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,772 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,772 | ^~~~~~ 2022-12-04T15:08:30,772 | P7_GMX 2022-12-04T15:08:30,775 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,776 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,776 | ^~~~~~ 2022-12-04T15:08:30,776 | P7_GMX 2022-12-04T15:08:30,781 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,781 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,781 | ^~~~~~~~~~~ 2022-12-04T15:08:30,781 | P7_PROFILE 2022-12-04T15:08:30,784 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,785 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,785 | ^~~~~~~~~~~ 2022-12-04T15:08:30,785 | P7_PROFILE 2022-12-04T15:08:30,788 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,789 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,789 | ^~~~~~~~~~~ 2022-12-04T15:08:30,789 | P7_PROFILE 2022-12-04T15:08:30,790 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,791 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,791 | ^~~~~~~~~~~ 2022-12-04T15:08:30,792 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,792 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,793 | ^~~~~~~~~~~ 2022-12-04T15:08:30,796 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,796 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,796 | ^~~~~~~~~~~ 2022-12-04T15:08:30,797 | P7_PROFILE 2022-12-04T15:08:30,800 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,800 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,800 | ^~~~~~~~~~~ 2022-12-04T15:08:30,801 | P7_PROFILE 2022-12-04T15:08:30,806 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,806 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,806 | ^~~~~~~~~~~ 2022-12-04T15:08:30,806 | P7_PROFILE 2022-12-04T15:08:30,811 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-04T15:08:30,811 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,812 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-04T15:08:30,812 | ^~~~~~~~~~~ 2022-12-04T15:08:30,814 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-04T15:08:30,816 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,816 55 | P7_OPROFILE *om = NULL; /* target profile */ 2022-12-04T15:08:30,817 | ^~~~~~~~~~~ 2022-12-04T15:08:30,817 | P7_PROFILE 2022-12-04T15:08:30,822 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-04T15:08:30,822 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,823 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T15:08:30,823 | ^~~~~~~~~~~ 2022-12-04T15:08:30,823 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T15:08:30,823 158 | if ( size <= 0 ) { \ 2022-12-04T15:08:30,823 | ^~~~ 2022-12-04T15:08:30,824 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-04T15:08:30,824 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T15:08:30,824 | ^~~~~~~~~~~ 2022-12-04T15:08:30,825 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T15:08:30,825 158 | if ( size <= 0 ) { \ 2022-12-04T15:08:30,825 | ^~~~ 2022-12-04T15:08:30,825 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T15:08:30,825 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T15:08:30,825 | ^ 2022-12-04T15:08:30,826 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T15:08:30,826 158 | if ( size <= 0 ) { \ 2022-12-04T15:08:30,826 | ^~~~ 2022-12-04T15:08:30,826 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T15:08:30,826 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T15:08:30,827 | ^ 2022-12-04T15:08:30,827 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T15:08:30,827 164 | if ( ((p) = malloc(size)) == NULL) { \ 2022-12-04T15:08:30,828 | ^~~~ 2022-12-04T15:08:30,828 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T15:08:30,829 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T15:08:30,829 | ^ 2022-12-04T15:08:30,829 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T15:08:30,829 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-04T15:08:30,830 | ^~~~ 2022-12-04T15:08:30,830 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,830 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-04T15:08:30,830 | ^~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,830 | p7_profile_Reuse 2022-12-04T15:08:30,846 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,846 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-04T15:08:30,847 | ^~~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,847 | p7_profile_Reuse 2022-12-04T15:08:30,850 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,851 91 | if (om) p7_oprofile_Destroy(om); 2022-12-04T15:08:30,851 | ^~~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,852 | p7_profile_Destroy 2022-12-04T15:08:30,853 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-04T15:08:30,854 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,854 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T15:08:30,855 | ^~~~~~~~~~~ 2022-12-04T15:08:30,855 | P7_PROFILE 2022-12-04T15:08:30,855 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-04T15:08:30,855 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T15:08:30,856 | ^ 2022-12-04T15:08:30,856 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:30,856 110 | for (i = 0; i < cache->n; i++) 2022-12-04T15:08:30,857 | ^ 2022-12-04T15:08:30,857 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-04T15:08:30,858 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-04T15:08:30,858 | ^~~~~~~~~~~~~~~~~~ 2022-12-04T15:08:30,858 | p7_profile_Sizeof 2022-12-04T15:08:30,861 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-04T15:08:30,862 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,863 134 | P7_OPROFILE *om; 2022-12-04T15:08:30,863 | ^~~~~~~~~~~ 2022-12-04T15:08:30,863 | P7_PROFILE 2022-12-04T15:08:30,863 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:30,864 138 | for (i = 0; i < cache->n; i++) 2022-12-04T15:08:30,864 | ^ 2022-12-04T15:08:30,864 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-04T15:08:30,865 141 | if (om->name) free(om->name); 2022-12-04T15:08:30,865 | ^~ 2022-12-04T15:08:30,865 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-04T15:08:30,865 141 | if (om->name) free(om->name); 2022-12-04T15:08:30,866 | ^~ 2022-12-04T15:08:30,866 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-04T15:08:30,866 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-04T15:08:30,866 | ^~ 2022-12-04T15:08:30,867 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-04T15:08:30,867 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:30,867 161 | for (i = 0; i < cache->n; i++) 2022-12-04T15:08:30,867 | ^ 2022-12-04T15:08:30,868 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-04T15:08:30,868 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,868 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,868 | ^~~~~ 2022-12-04T15:08:30,868 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,868 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,869 | ^~~~~~ 2022-12-04T15:08:30,869 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,869 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,870 | ^~~~~~ 2022-12-04T15:08:30,870 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,871 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,871 | ^~~~~~ 2022-12-04T15:08:30,871 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,871 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,872 | ^~~~~~ 2022-12-04T15:08:30,873 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,873 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,874 | ^~~~~~~~~~~ 2022-12-04T15:08:30,874 | P7_PROFILE 2022-12-04T15:08:30,875 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,876 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,876 | ^~~~~~~~~~~ 2022-12-04T15:08:30,877 | P7_PROFILE 2022-12-04T15:08:30,878 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,879 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,879 | ^~~~~~~~~~~ 2022-12-04T15:08:30,879 | P7_PROFILE 2022-12-04T15:08:30,880 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,881 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,881 | ^~~~~~~~~~~ 2022-12-04T15:08:30,881 | P7_PROFILE 2022-12-04T15:08:30,882 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,883 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,883 | ^~~~~~~~~~~ 2022-12-04T15:08:30,885 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,886 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,886 | ^~~~~~~~~~~ 2022-12-04T15:08:30,887 | P7_PROFILE 2022-12-04T15:08:30,888 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,889 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,889 | ^~~~~~~~~~~ 2022-12-04T15:08:30,890 | P7_PROFILE 2022-12-04T15:08:30,892 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,892 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,892 | ^~~~~~~~~~~ 2022-12-04T15:08:30,893 | P7_PROFILE 2022-12-04T15:08:30,893 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-04T15:08:30,894 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,894 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,894 | ^~~~~ 2022-12-04T15:08:30,894 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,895 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,895 | ^~~~~~ 2022-12-04T15:08:30,895 | P7_GMX 2022-12-04T15:08:30,896 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,896 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,896 | ^~~~~~ 2022-12-04T15:08:30,896 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,897 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,897 | ^~~~~~ 2022-12-04T15:08:30,897 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,898 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,898 | ^~~~~~ 2022-12-04T15:08:30,899 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,899 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,899 | ^~~~~~ 2022-12-04T15:08:30,899 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,900 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,900 | ^~~~~~ 2022-12-04T15:08:30,901 | P7_GMX 2022-12-04T15:08:30,902 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,902 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,902 | ^~~~~~ 2022-12-04T15:08:30,902 | P7_GMX 2022-12-04T15:08:30,902 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,903 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,903 | ^~~~~~~~~~~ 2022-12-04T15:08:30,903 | P7_PROFILE 2022-12-04T15:08:30,903 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,904 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,904 | ^~~~~~ 2022-12-04T15:08:30,905 | P7_GMX 2022-12-04T15:08:30,905 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,905 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,906 | ^~~~~~~~~~~ 2022-12-04T15:08:30,906 | P7_PROFILE 2022-12-04T15:08:30,906 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,907 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:30,907 | ^~~~~~~~~~~ 2022-12-04T15:08:30,908 | P7_PROFILE 2022-12-04T15:08:30,908 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,908 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,909 | ^~~~~~~~~~~ 2022-12-04T15:08:30,909 | P7_PROFILE 2022-12-04T15:08:30,909 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,909 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:30,910 | ^~~~~~~~~~~ 2022-12-04T15:08:30,910 | P7_PROFILE 2022-12-04T15:08:30,910 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,910 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,911 | ^~~~~~~~~~~ 2022-12-04T15:08:30,911 | P7_PROFILE 2022-12-04T15:08:30,911 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,912 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:30,912 | ^~~~~~~~~~~ 2022-12-04T15:08:30,913 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,913 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,913 | ^~~~~~~~~~~ 2022-12-04T15:08:30,914 | P7_PROFILE 2022-12-04T15:08:30,914 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,914 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,914 | ^~~~~~~~~~~ 2022-12-04T15:08:30,915 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,915 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:30,916 | ^~~~~~~~~~~ 2022-12-04T15:08:30,916 | P7_PROFILE 2022-12-04T15:08:30,916 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,917 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,917 | ^~~~~~~~~~~ 2022-12-04T15:08:30,917 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,918 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:30,919 | ^~~~~~~~~~~ 2022-12-04T15:08:30,919 | P7_PROFILE 2022-12-04T15:08:30,919 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,920 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,920 | ^~~~~~~~~~~ 2022-12-04T15:08:30,920 | P7_PROFILE 2022-12-04T15:08:30,921 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,921 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,922 | ^~~~~~~~~~~ 2022-12-04T15:08:30,922 | P7_PROFILE 2022-12-04T15:08:30,922 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,922 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,923 | ^~~~~~~~~~~ 2022-12-04T15:08:30,923 | P7_PROFILE 2022-12-04T15:08:30,924 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,924 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,925 | ^~~~~~ 2022-12-04T15:08:30,925 | P7_GMX 2022-12-04T15:08:30,926 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,927 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,927 | ^~~~~~ 2022-12-04T15:08:30,928 | P7_GMX 2022-12-04T15:08:30,928 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,928 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,929 | ^~~~~~~~~~~ 2022-12-04T15:08:30,929 | P7_PROFILE 2022-12-04T15:08:30,929 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,930 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,930 | ^~~~~~ 2022-12-04T15:08:30,931 | P7_GMX 2022-12-04T15:08:30,932 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:30,933 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:30,933 | ^~~~~~ 2022-12-04T15:08:30,933 | P7_GMX 2022-12-04T15:08:30,936 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,937 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:30,937 | ^~~~~~~~~~~ 2022-12-04T15:08:30,938 | P7_PROFILE 2022-12-04T15:08:30,939 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,940 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:30,940 | ^~~~~~~~~~~ 2022-12-04T15:08:30,941 | P7_PROFILE 2022-12-04T15:08:30,943 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,943 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:30,943 | ^~~~~~~~~~~ 2022-12-04T15:08:30,944 | P7_PROFILE 2022-12-04T15:08:30,944 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,944 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:30,945 | ^~~~~~~~~~~ 2022-12-04T15:08:30,945 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:30,945 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:30,946 | ^~~~~~~~~~~ 2022-12-04T15:08:30,947 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,948 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:30,948 | ^~~~~~~~~~~ 2022-12-04T15:08:30,949 | P7_PROFILE 2022-12-04T15:08:30,950 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,951 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:30,951 | ^~~~~~~~~~~ 2022-12-04T15:08:30,951 | P7_PROFILE 2022-12-04T15:08:30,956 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,956 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:30,956 | ^~~~~~~~~~~ 2022-12-04T15:08:30,957 | P7_PROFILE 2022-12-04T15:08:30,990 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-04T15:08:30,991 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T15:08:30,991 829 | #error "No vector implementation enabled" 2022-12-04T15:08:30,991 | ^~~~~ 2022-12-04T15:08:30,992 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,992 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T15:08:30,992 | ^~~~~~ 2022-12-04T15:08:30,992 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,993 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T15:08:30,993 | ^~~~~~ 2022-12-04T15:08:30,993 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,993 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T15:08:30,993 | ^~~~~~ 2022-12-04T15:08:30,993 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T15:08:30,994 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T15:08:30,994 | ^~~~~~ 2022-12-04T15:08:30,996 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,996 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T15:08:30,997 | ^~~~~~~~~~~ 2022-12-04T15:08:30,997 | P7_PROFILE 2022-12-04T15:08:30,998 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:30,999 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T15:08:30,999 | ^~~~~~~~~~~ 2022-12-04T15:08:30,999 | P7_PROFILE 2022-12-04T15:08:31,000 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,001 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T15:08:31,001 | ^~~~~~~~~~~ 2022-12-04T15:08:31,002 | P7_PROFILE 2022-12-04T15:08:31,003 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,003 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T15:08:31,003 | ^~~~~~~~~~~ 2022-12-04T15:08:31,003 | P7_PROFILE 2022-12-04T15:08:31,005 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:31,005 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T15:08:31,005 | ^~~~~~~~~~~ 2022-12-04T15:08:31,008 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,008 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T15:08:31,009 | ^~~~~~~~~~~ 2022-12-04T15:08:31,009 | P7_PROFILE 2022-12-04T15:08:31,010 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,011 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T15:08:31,011 | ^~~~~~~~~~~ 2022-12-04T15:08:31,011 | P7_PROFILE 2022-12-04T15:08:31,013 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,014 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:31,014 | ^~~~~~~~~~~ 2022-12-04T15:08:31,014 | P7_PROFILE 2022-12-04T15:08:31,016 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:31,017 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:31,017 | ^~~~~~ 2022-12-04T15:08:31,017 | P7_GMX 2022-12-04T15:08:31,018 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:31,019 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:31,019 | ^~~~~~ 2022-12-04T15:08:31,019 | P7_GMX 2022-12-04T15:08:31,021 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:31,021 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:31,022 | ^~~~~~ 2022-12-04T15:08:31,022 | P7_GMX 2022-12-04T15:08:31,023 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T15:08:31,023 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T15:08:31,023 | ^~~~~~ 2022-12-04T15:08:31,024 | P7_GMX 2022-12-04T15:08:31,026 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,027 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T15:08:31,027 | ^~~~~~~~~~~ 2022-12-04T15:08:31,027 | P7_PROFILE 2022-12-04T15:08:31,029 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,029 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T15:08:31,030 | ^~~~~~~~~~~ 2022-12-04T15:08:31,030 | P7_PROFILE 2022-12-04T15:08:31,031 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,032 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T15:08:31,032 | ^~~~~~~~~~~ 2022-12-04T15:08:31,032 | P7_PROFILE 2022-12-04T15:08:31,032 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:31,032 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T15:08:31,032 | ^~~~~~~~~~~ 2022-12-04T15:08:31,032 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T15:08:31,033 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T15:08:31,033 | ^~~~~~~~~~~ 2022-12-04T15:08:31,035 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,035 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T15:08:31,036 | ^~~~~~~~~~~ 2022-12-04T15:08:31,036 | P7_PROFILE 2022-12-04T15:08:31,037 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,037 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T15:08:31,038 | ^~~~~~~~~~~ 2022-12-04T15:08:31,038 | P7_PROFILE 2022-12-04T15:08:31,042 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T15:08:31,042 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T15:08:31,042 | ^~~~~~~~~~~ 2022-12-04T15:08:31,042 | P7_PROFILE 2022-12-04T15:08:31,046 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-04T15:08:31,046 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,046 292 | if (ranges[lo].lower > end) return -1; 2022-12-04T15:08:31,046 | ^ 2022-12-04T15:08:31,047 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,047 293 | if (ranges[hi].upper < start) return -1; 2022-12-04T15:08:31,047 | ^ 2022-12-04T15:08:31,047 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,047 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-04T15:08:31,047 | ^ 2022-12-04T15:08:31,047 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,048 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T15:08:31,048 | ^~ 2022-12-04T15:08:31,048 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,048 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T15:08:31,048 | ^~ 2022-12-04T15:08:31,048 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,048 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T15:08:31,049 | ^~ 2022-12-04T15:08:31,049 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,049 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T15:08:31,049 | ^~ 2022-12-04T15:08:31,049 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-04T15:08:31,049 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-04T15:08:31,049 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T15:08:31,050 | ^~ 2022-12-04T15:08:31,050 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,050 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T15:08:31,050 | ^~ 2022-12-04T15:08:31,050 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-04T15:08:31,050 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,050 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:31,050 | ^ 2022-12-04T15:08:31,051 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:31,051 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T15:08:31,051 | ^~~~~~~ 2022-12-04T15:08:31,051 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:31,051 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T15:08:31,051 | ^~~ 2022-12-04T15:08:31,051 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T15:08:31,052 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T15:08:31,052 | ^~~~~~~ 2022-12-04T15:08:31,052 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,052 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T15:08:31,052 | ^ 2022-12-04T15:08:31,052 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T15:08:31,052 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T15:08:31,052 | ^~~~~~~ 2022-12-04T15:08:31,053 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T15:08:31,053 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T15:08:31,053 | ^~~ 2022-12-04T15:08:31,053 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T15:08:31,053 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T15:08:31,053 | ^~~~~~~ 2022-12-04T15:08:31,053 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,054 353 | for (j= start; j<=end; j++) 2022-12-04T15:08:31,054 | ^~ 2022-12-04T15:08:31,056 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-04T15:08:31,056 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T15:08:31,056 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T15:08:31,057 | ^~ 2022-12-04T15:08:31,057 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T15:08:31,057 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T15:08:31,057 | ^~ 2022-12-04T15:08:31,058 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-04T15:08:31,059 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,059 620 | for (i=0; iseq_count; i++) { 2022-12-04T15:08:31,059 | ^ 2022-12-04T15:08:31,062 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,062 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-04T15:08:31,062 | ^~ 2022-12-04T15:08:31,062 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,062 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-04T15:08:31,062 | ^~ 2022-12-04T15:08:31,062 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,063 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-04T15:08:31,063 | ^~ 2022-12-04T15:08:31,063 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T15:08:31,063 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-04T15:08:31,063 | ^~ 2022-12-04T15:08:31,064 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,064 651 | for (i=0; iambig_list->count; i++) { 2022-12-04T15:08:31,064 | ^ 2022-12-04T15:08:31,064 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,064 663 | for (i=0; iseq_count; i++) 2022-12-04T15:08:31,065 | ^ 2022-12-04T15:08:31,066 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-04T15:08:31,066 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T15:08:31,066 727 | for (i=0; iseq_count; i++) { 2022-12-04T15:08:31,066 | ^ 2022-12-04T15:08:31,090 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-04T15:08:31,260 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-04T15:08:31,278 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp3we8zy0w[/] 2022-12-04T15:08:31,278 [bold magenta]cwd[/]: /tmp/pip-wheel-884ziwy2/pyhmmer_373049cfc9eb4dd9b6486318b1f6ba7e 2022-12-04T15:08:31,278 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-04T15:08:31,281 ERROR: Failed building wheel for pyhmmer 2022-12-04T15:08:31,284 Failed to build pyhmmer 2022-12-04T15:08:31,285 ERROR: Failed to build one or more wheels 2022-12-04T15:08:31,286 Exception information: 2022-12-04T15:08:31,286 Traceback (most recent call last): 2022-12-04T15:08:31,286 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-04T15:08:31,286 status = run_func(*args) 2022-12-04T15:08:31,286 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-04T15:08:31,286 return func(self, options, args) 2022-12-04T15:08:31,286 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-04T15:08:31,286 raise CommandError("Failed to build one or more wheels") 2022-12-04T15:08:31,286 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-04T15:08:31,289 Removed build tracker: '/tmp/pip-build-tracker-xz4g1icn'