2022-12-04T16:10:45,068 Created temporary directory: /tmp/pip-ephem-wheel-cache-hltgh3wk 2022-12-04T16:10:45,072 Created temporary directory: /tmp/pip-build-tracker-m_tf76nu 2022-12-04T16:10:45,073 Initialized build tracking at /tmp/pip-build-tracker-m_tf76nu 2022-12-04T16:10:45,074 Created build tracker: /tmp/pip-build-tracker-m_tf76nu 2022-12-04T16:10:45,074 Entered build tracker: /tmp/pip-build-tracker-m_tf76nu 2022-12-04T16:10:45,075 Created temporary directory: /tmp/pip-wheel-zafyaa5y 2022-12-04T16:10:45,083 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T16:10:45,088 Created temporary directory: /tmp/pip-ephem-wheel-cache-wpkb246i 2022-12-04T16:10:45,139 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T16:10:45,146 2 location(s) to search for versions of pyhmmer: 2022-12-04T16:10:45,146 * https://pypi.org/simple/pyhmmer/ 2022-12-04T16:10:45,146 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T16:10:45,147 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-04T16:10:45,148 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-04T16:10:45,152 Found index url https://pypi.org/simple 2022-12-04T16:10:45,492 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-04T16:10:45,742 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T16:10:45,761 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T16:10:45,761 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-04T16:10:45,762 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-04T16:10:45,912 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,912 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,913 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,932 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,934 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-04T16:10:45,935 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,936 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,936 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,938 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,939 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,939 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,941 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-04T16:10:45,942 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,943 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:45,943 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,038 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2022-12-04T16:10:46,038 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,039 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,039 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,040 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,041 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/cd/2ae79c367d9ac8df13d62cd7a7c33f8ae37c4b7084886825e616862fc7c3/pyhmmer-0.7.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,042 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/12/df/5d0e476aab5fa0fa99313e9f2c1d641690381724e8d691a4fe42b7734b6e/pyhmmer-0.7.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,043 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/af/dc4680fa932f2bf899f08438eb08bd271f2602454a0a0a8a2fede8bd2abe/pyhmmer-0.7.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,044 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/51/03/a89c205cef3d63d140049a204977c5903adbcc2fffcd37f903a155fa5cc8/pyhmmer-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,044 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/47/eeb9204615d3acf39fe7ba1f5d0209d263c747eac405ea97e3ac6428c7a9/pyhmmer-0.7.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,045 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,045 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,046 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,046 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,047 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-04T16:10:46,048 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2022-12-04T16:10:46,049 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T16:10:46,050 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T16:10:46,052 Found index url https://www.piwheels.org/simple 2022-12-04T16:10:47,900 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-04T16:10:47,902 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-04T16:10:47,902 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-04T16:10:47,947 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-04T16:10:47,978 Collecting pyhmmer==0.7.0 2022-12-04T16:10:47,982 Created temporary directory: /tmp/pip-unpack-8tnncqa4 2022-12-04T16:10:49,083 Downloading pyhmmer-0.7.0.tar.gz (11.0 MB) 2022-12-04T16:10:58,391 Added pyhmmer==0.7.0 from https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-m_tf76nu' 2022-12-04T16:10:58,400 Created temporary directory: /tmp/pip-build-env-gf3pud24 2022-12-04T16:10:58,412 Installing build dependencies: started 2022-12-04T16:10:58,414 Running command pip subprocess to install build dependencies 2022-12-04T16:11:01,144 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-04T16:11:01,932 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T16:11:01,985 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T16:11:12,015 Collecting setuptools>=46.4 2022-12-04T16:11:18,628 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-04T16:11:27,632 Collecting cython~=0.29.16 2022-12-04T16:11:29,475 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-04T16:11:35,090 Installing collected packages: setuptools, cython 2022-12-04T16:11:45,095 Creating /tmp/pip-build-env-gf3pud24/overlay/bin 2022-12-04T16:11:45,100 changing mode of /tmp/pip-build-env-gf3pud24/overlay/bin/cygdb to 755 2022-12-04T16:11:45,105 changing mode of /tmp/pip-build-env-gf3pud24/overlay/bin/cython to 755 2022-12-04T16:11:45,110 changing mode of /tmp/pip-build-env-gf3pud24/overlay/bin/cythonize to 755 2022-12-04T16:11:45,158 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-04T16:11:45,196 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T16:11:45,197 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T16:11:45,691 Installing build dependencies: finished with status 'done' 2022-12-04T16:11:45,703 Getting requirements to build wheel: started 2022-12-04T16:11:45,706 Running command Getting requirements to build wheel 2022-12-04T16:11:48,452 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T16:11:48,672 Getting requirements to build wheel: finished with status 'done' 2022-12-04T16:11:48,709 Installing backend dependencies: started 2022-12-04T16:11:48,711 Running command pip subprocess to install backend dependencies 2022-12-04T16:11:51,533 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-04T16:11:52,318 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-04T16:11:52,378 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-04T16:11:54,404 Collecting wheel 2022-12-04T16:11:54,449 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-04T16:11:59,173 Installing collected packages: wheel 2022-12-04T16:11:59,449 Creating /tmp/pip-build-env-gf3pud24/normal/bin 2022-12-04T16:11:59,453 changing mode of /tmp/pip-build-env-gf3pud24/normal/bin/wheel to 755 2022-12-04T16:11:59,479 Successfully installed wheel-0.38.4 2022-12-04T16:11:59,508 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-04T16:11:59,509 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-04T16:11:59,864 Installing backend dependencies: finished with status 'done' 2022-12-04T16:11:59,869 Created temporary directory: /tmp/pip-modern-metadata-xyzhm7lp 2022-12-04T16:11:59,876 Preparing metadata (pyproject.toml): started 2022-12-04T16:11:59,878 Running command Preparing metadata (pyproject.toml) 2022-12-04T16:12:02,567 running dist_info 2022-12-04T16:12:02,598 creating /tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info 2022-12-04T16:12:02,609 writing /tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/PKG-INFO 2022-12-04T16:12:02,615 writing dependency_links to /tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/dependency_links.txt 2022-12-04T16:12:02,620 writing requirements to /tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/requires.txt 2022-12-04T16:12:02,622 writing top-level names to /tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/top_level.txt 2022-12-04T16:12:02,625 writing manifest file '/tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T16:12:02,736 reading manifest file '/tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T16:12:02,743 reading manifest template 'MANIFEST.in' 2022-12-04T16:12:03,938 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T16:12:03,938 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T16:12:03,942 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T16:12:03,946 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T16:12:03,950 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T16:12:03,953 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T16:12:03,957 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T16:12:03,960 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T16:12:03,963 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T16:12:03,967 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T16:12:03,970 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T16:12:03,974 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T16:12:03,977 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T16:12:03,981 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T16:12:03,984 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T16:12:03,985 adding license file 'COPYING' 2022-12-04T16:12:04,058 writing manifest file '/tmp/pip-modern-metadata-xyzhm7lp/pyhmmer.egg-info/SOURCES.txt' 2022-12-04T16:12:04,062 creating '/tmp/pip-modern-metadata-xyzhm7lp/pyhmmer-0.7.0.dist-info' 2022-12-04T16:12:04,476 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-04T16:12:04,494 Source in /tmp/pip-wheel-zafyaa5y/pyhmmer_8c8e917d936449229da1a71d9a604d7a has version 0.7.0, which satisfies requirement pyhmmer==0.7.0 from https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz 2022-12-04T16:12:04,496 Removed pyhmmer==0.7.0 from https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-m_tf76nu' 2022-12-04T16:12:04,511 Created temporary directory: /tmp/pip-unpack-x3068wck 2022-12-04T16:12:04,513 Building wheels for collected packages: pyhmmer 2022-12-04T16:12:04,522 Created temporary directory: /tmp/pip-wheel-d9xwm50d 2022-12-04T16:12:04,522 Destination directory: /tmp/pip-wheel-d9xwm50d 2022-12-04T16:12:04,527 Building wheel for pyhmmer (pyproject.toml): started 2022-12-04T16:12:04,529 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-04T16:12:07,170 running bdist_wheel 2022-12-04T16:12:07,202 running build 2022-12-04T16:12:07,203 running build_py 2022-12-04T16:12:07,221 creating build 2022-12-04T16:12:07,222 creating build/lib.linux-armv7l-cpython-37 2022-12-04T16:12:07,224 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:07,227 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:07,231 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:07,238 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:07,244 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,246 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,250 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,254 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,258 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,264 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:07,271 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,273 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,277 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,282 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,286 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,291 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,296 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,301 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,305 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,310 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,315 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,318 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,323 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,327 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-04T16:12:07,334 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,336 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,340 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,346 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,350 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,354 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,357 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,362 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,366 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,371 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,375 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,379 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,383 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,387 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-04T16:12:07,390 running egg_info 2022-12-04T16:12:07,426 writing pyhmmer.egg-info/PKG-INFO 2022-12-04T16:12:07,431 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-04T16:12:07,436 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-04T16:12:07,439 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-04T16:12:07,475 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T16:12:07,519 reading manifest template 'MANIFEST.in' 2022-12-04T16:12:08,702 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-04T16:12:08,702 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-04T16:12:08,709 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-04T16:12:08,714 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-04T16:12:08,720 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-04T16:12:08,725 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-04T16:12:08,731 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-04T16:12:08,736 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-04T16:12:08,741 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-04T16:12:08,746 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-04T16:12:08,752 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-04T16:12:08,757 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-04T16:12:08,762 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-04T16:12:08,767 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-04T16:12:08,772 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-04T16:12:08,773 adding license file 'COPYING' 2022-12-04T16:12:08,872 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-04T16:12:08,900 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,900 !! 2022-12-04T16:12:08,901 ############################ 2022-12-04T16:12:08,902 # Package would be ignored # 2022-12-04T16:12:08,902 ############################ 2022-12-04T16:12:08,902 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-04T16:12:08,903 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,903 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-04T16:12:08,904 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,904 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,905 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-04T16:12:08,905 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,905 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,905 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,906 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,906 documentation page. 2022-12-04T16:12:08,907 !! 2022-12-04T16:12:08,908 check.warn(importable) 2022-12-04T16:12:08,908 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,908 !! 2022-12-04T16:12:08,909 ############################ 2022-12-04T16:12:08,909 # Package would be ignored # 2022-12-04T16:12:08,910 ############################ 2022-12-04T16:12:08,910 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-04T16:12:08,910 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,911 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-04T16:12:08,911 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,911 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,912 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-04T16:12:08,912 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,913 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,913 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,914 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,914 documentation page. 2022-12-04T16:12:08,915 !! 2022-12-04T16:12:08,915 check.warn(importable) 2022-12-04T16:12:08,916 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,916 !! 2022-12-04T16:12:08,917 ############################ 2022-12-04T16:12:08,917 # Package would be ignored # 2022-12-04T16:12:08,917 ############################ 2022-12-04T16:12:08,918 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-04T16:12:08,918 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,918 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-04T16:12:08,919 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,919 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,920 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-04T16:12:08,920 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,920 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,920 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,921 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,921 documentation page. 2022-12-04T16:12:08,922 !! 2022-12-04T16:12:08,923 check.warn(importable) 2022-12-04T16:12:08,923 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,923 !! 2022-12-04T16:12:08,924 ############################ 2022-12-04T16:12:08,924 # Package would be ignored # 2022-12-04T16:12:08,925 ############################ 2022-12-04T16:12:08,925 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-04T16:12:08,925 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,926 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-04T16:12:08,926 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,926 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,927 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-04T16:12:08,927 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,927 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,928 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,928 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,929 documentation page. 2022-12-04T16:12:08,929 !! 2022-12-04T16:12:08,930 check.warn(importable) 2022-12-04T16:12:08,930 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,931 !! 2022-12-04T16:12:08,931 ############################ 2022-12-04T16:12:08,932 # Package would be ignored # 2022-12-04T16:12:08,932 ############################ 2022-12-04T16:12:08,932 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-04T16:12:08,932 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,933 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-04T16:12:08,933 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,934 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,934 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-04T16:12:08,935 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,935 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,935 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,936 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,936 documentation page. 2022-12-04T16:12:08,937 !! 2022-12-04T16:12:08,937 check.warn(importable) 2022-12-04T16:12:08,938 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,938 !! 2022-12-04T16:12:08,939 ############################ 2022-12-04T16:12:08,939 # Package would be ignored # 2022-12-04T16:12:08,939 ############################ 2022-12-04T16:12:08,940 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-04T16:12:08,940 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,940 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-04T16:12:08,941 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,941 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,942 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-04T16:12:08,942 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,942 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,942 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,943 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,943 documentation page. 2022-12-04T16:12:08,944 !! 2022-12-04T16:12:08,945 check.warn(importable) 2022-12-04T16:12:08,945 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,945 !! 2022-12-04T16:12:08,946 ############################ 2022-12-04T16:12:08,946 # Package would be ignored # 2022-12-04T16:12:08,947 ############################ 2022-12-04T16:12:08,947 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-04T16:12:08,947 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,948 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-04T16:12:08,948 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,948 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,949 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-04T16:12:08,949 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,950 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,950 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,951 documentation page. 2022-12-04T16:12:08,951 !! 2022-12-04T16:12:08,952 check.warn(importable) 2022-12-04T16:12:08,952 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-04T16:12:08,953 !! 2022-12-04T16:12:08,953 ############################ 2022-12-04T16:12:08,954 # Package would be ignored # 2022-12-04T16:12:08,954 ############################ 2022-12-04T16:12:08,954 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-04T16:12:08,955 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:12:08,955 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-04T16:12:08,956 because it may contain data files, but this behavior is likely to change 2022-12-04T16:12:08,956 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:12:08,957 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-04T16:12:08,957 the `packages` configuration field or the proper discovery methods 2022-12-04T16:12:08,957 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:12:08,957 instead of `find_packages(...)`/`find:`). 2022-12-04T16:12:08,958 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:12:08,958 documentation page. 2022-12-04T16:12:08,959 !! 2022-12-04T16:12:08,960 check.warn(importable) 2022-12-04T16:12:08,973 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:08,978 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:08,983 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:08,988 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:08,994 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,000 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,016 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,020 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,025 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,029 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,035 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,041 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,061 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-04T16:12:09,064 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T16:12:09,066 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T16:12:09,071 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-04T16:12:09,076 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,077 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,081 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,086 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,090 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,094 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,098 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,102 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-04T16:12:09,107 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-04T16:12:09,111 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-04T16:12:09,112 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-04T16:12:09,117 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-04T16:12:09,118 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-04T16:12:09,123 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T16:12:09,125 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T16:12:09,132 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T16:12:09,140 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T16:12:09,148 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-04T16:12:09,297 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,298 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,309 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,315 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,318 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,324 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,331 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,348 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,354 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,358 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,367 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,377 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,387 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,392 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,396 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,404 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,411 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,653 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,712 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,717 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,841 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-04T16:12:09,965 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:09,968 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:09,983 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:09,993 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:10,005 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:10,016 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:10,032 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:10,053 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-04T16:12:10,265 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T16:12:10,267 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T16:12:10,276 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T16:12:10,287 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T16:12:10,296 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-04T16:12:10,517 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T16:12:10,519 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T16:12:10,523 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T16:12:10,528 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-04T16:12:10,533 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T16:12:10,534 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T16:12:10,539 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T16:12:10,545 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T16:12:10,550 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-04T16:12:10,555 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,557 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,609 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,624 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,839 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,849 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,854 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,860 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-04T16:12:10,864 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,866 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,871 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,876 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,880 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,884 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,889 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,893 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,899 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,905 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-04T16:12:10,919 running build_clib 2022-12-04T16:12:10,937 creating build/temp.linux-armv7l-cpython-37 2022-12-04T16:12:10,939 generating "divsufsort.h" for divsufsort library 2022-12-04T16:12:10,940 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-04T16:12:10,944 generating "esl_config.h" for easel library 2022-12-04T16:12:21,924 generating "p7_config.h" for hmmer library 2022-12-04T16:12:34,238 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-04T16:12:34,267 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-04T16:12:34,299 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T16:12:34,320 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-04T16:12:34,321 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-04T16:12:34,322 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-04T16:12:34,323 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-04T16:12:34,325 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T16:12:43,344 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-04T16:12:43,404 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_exponential.c, vendor/easel/esl_red_black.c, vendor/easel/esl_random.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_normal.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_msafile.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_mem.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_json.c, vendor/easel/esl_avx512.c, vendor/easel/esl_arr2.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gencode.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sse.c, vendor/easel/esl_wuss.c, vendor/easel/esl_histogram.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_weibull.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_ssi.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_neon.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sq.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_getopts.c, vendor/easel/esl_cluster.c, vendor/easel/esl_mpi.c, vendor/easel/esl_distance.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msa.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_swat.c, vendor/easel/esl_graph.c, vendor/easel/esl_alloc.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_hmm.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_varint.c, vendor/easel/easel.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_tree.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_gev.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_fileparser.c, vendor/easel/interface_lapack.c, vendor/easel/esl_vmx.c, vendor/easel/esl_arr3.c, vendor/easel/esl_threads.c, vendor/easel/esl_heap.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_rand64.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_stack.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-04T16:12:43,412 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-04T16:12:43,414 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-04T16:12:43,416 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-04T16:12:43,417 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-04T16:12:43,417 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-04T16:12:43,419 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-04T16:12:43,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-04T16:12:43,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-04T16:12:43,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-04T16:12:43,444 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-04T16:12:44,349 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-04T16:12:44,351 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-04T16:12:44,742 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-04T16:12:44,743 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-04T16:12:44,744 for (i = 0; i < a; i++) 2022-12-04T16:12:44,745 ^ 2022-12-04T16:12:45,260 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-04T16:12:45,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-04T16:12:46,304 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-04T16:12:46,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-04T16:12:46,494 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-04T16:12:46,497 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-04T16:12:46,559 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-04T16:12:46,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-04T16:12:47,238 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-04T16:12:47,239 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-04T16:12:47,785 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-04T16:12:47,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-04T16:12:47,988 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-04T16:12:47,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-04T16:12:48,568 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-04T16:12:48,569 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-04T16:12:49,048 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-04T16:12:49,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-04T16:12:49,593 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-04T16:12:49,594 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-04T16:12:49,855 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-04T16:12:49,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-04T16:12:50,376 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-04T16:12:50,378 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-04T16:12:50,397 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-04T16:12:50,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-04T16:12:50,424 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-04T16:12:50,426 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-04T16:12:50,998 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-04T16:12:51,000 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-04T16:12:51,001 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-04T16:12:51,015 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-04T16:12:52,113 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-04T16:12:52,114 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:12:52,114 int flags; 2022-12-04T16:12:52,115 ^~~~~ 2022-12-04T16:12:52,730 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-04T16:12:52,731 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:12:52,731 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-04T16:12:52,732 ^ 2022-12-04T16:12:52,733 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-04T16:12:52,733 char *p; 2022-12-04T16:12:52,734 ^ 2022-12-04T16:12:53,291 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-04T16:12:53,292 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-04T16:12:53,582 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-04T16:12:53,584 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-04T16:12:54,464 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-04T16:12:54,466 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-04T16:12:55,577 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-04T16:12:55,578 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-04T16:12:55,613 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-04T16:12:55,616 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-04T16:12:55,799 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-04T16:12:55,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-04T16:12:56,485 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-04T16:12:56,486 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:12:56,486 return status; 2022-12-04T16:12:56,487 ^~~~~~ 2022-12-04T16:12:57,336 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-04T16:12:57,338 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-04T16:12:57,402 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-04T16:12:57,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-04T16:12:57,535 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-04T16:12:57,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-04T16:12:57,796 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-04T16:12:57,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-04T16:12:58,159 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-04T16:12:58,161 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-04T16:12:58,237 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-04T16:12:58,238 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-04T16:12:58,239 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:12:58,239 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:12:58,240 ^ 2022-12-04T16:12:58,241 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:12:58,241 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T16:12:58,242 ^~~~~~~ 2022-12-04T16:12:58,242 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:12:58,243 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:12:58,243 ^~~ 2022-12-04T16:12:58,244 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:12:58,244 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-04T16:12:58,245 ^~~~~~~ 2022-12-04T16:12:58,245 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:12:58,246 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:12:58,246 ^ 2022-12-04T16:12:58,247 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:12:58,247 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T16:12:58,248 ^~~~~~~ 2022-12-04T16:12:58,248 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:12:58,248 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:12:58,249 ^~~ 2022-12-04T16:12:58,249 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:12:58,250 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-04T16:12:58,250 ^~~~~~~ 2022-12-04T16:12:58,605 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-04T16:12:58,606 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:12:58,607 if (rank > h->n) 2022-12-04T16:12:58,608 ^ 2022-12-04T16:12:58,672 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-04T16:12:58,674 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-04T16:12:59,308 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-04T16:12:59,310 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-04T16:13:00,331 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-04T16:13:00,334 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-04T16:13:01,852 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-04T16:13:01,854 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-04T16:13:02,074 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-04T16:13:02,077 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-04T16:13:02,272 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-04T16:13:02,273 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:02,274 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-04T16:13:02,274 ^~ 2022-12-04T16:13:02,863 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-04T16:13:02,865 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-04T16:13:03,213 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-04T16:13:03,214 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,215 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-04T16:13:03,215 ^~ 2022-12-04T16:13:03,240 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-04T16:13:03,241 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,242 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-04T16:13:03,243 ^ 2022-12-04T16:13:03,253 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-04T16:13:03,254 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,255 if (n > ns->plen) ns->plen = n; 2022-12-04T16:13:03,255 ^ 2022-12-04T16:13:03,260 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,261 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-04T16:13:03,261 ^ 2022-12-04T16:13:03,265 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-04T16:13:03,266 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,266 if (n > ns->slen) ns->slen = n; 2022-12-04T16:13:03,267 ^ 2022-12-04T16:13:03,272 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,272 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-04T16:13:03,273 ^ 2022-12-04T16:13:03,286 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-04T16:13:03,287 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,288 for (i = 0; i < ns->nprimary; i++) 2022-12-04T16:13:03,288 ^ 2022-12-04T16:13:03,292 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,293 for (i = 0; i < ns->nprimary; i++) 2022-12-04T16:13:03,293 ^ 2022-12-04T16:13:03,297 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,298 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T16:13:03,298 ^ 2022-12-04T16:13:03,302 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,303 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T16:13:03,303 ^ 2022-12-04T16:13:03,313 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-04T16:13:03,314 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,315 for (i = 0; i < ns->nprimary; i++) 2022-12-04T16:13:03,315 ^ 2022-12-04T16:13:03,318 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,319 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T16:13:03,320 ^ 2022-12-04T16:13:03,332 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-04T16:13:03,333 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,334 for (i = 0; i < ns->nprimary; i++) { 2022-12-04T16:13:03,335 ^ 2022-12-04T16:13:03,338 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,338 for (i = 0; i < ns->nsecondary; i++) 2022-12-04T16:13:03,339 ^ 2022-12-04T16:13:03,342 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,342 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-04T16:13:03,343 ^ 2022-12-04T16:13:03,345 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,346 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-04T16:13:03,347 ^ 2022-12-04T16:13:03,349 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:03,349 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-04T16:13:03,350 ^ 2022-12-04T16:13:03,979 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-04T16:13:03,981 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-04T16:13:03,982 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-04T16:13:03,997 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-04T16:13:04,221 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-04T16:13:04,223 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-04T16:13:04,522 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-04T16:13:04,524 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-04T16:13:04,649 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-04T16:13:04,651 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-04T16:13:04,656 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-04T16:13:04,656 static double stopwatch_getRealTime(void); 2022-12-04T16:13:04,657 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:05,067 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-04T16:13:05,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-04T16:13:05,452 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-04T16:13:05,452 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,453 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-04T16:13:05,453 ^~ 2022-12-04T16:13:05,454 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,455 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T16:13:05,455 ^~ 2022-12-04T16:13:05,456 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,456 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-04T16:13:05,457 ^~ 2022-12-04T16:13:05,484 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-04T16:13:05,485 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,485 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,486 ^~ 2022-12-04T16:13:05,487 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-04T16:13:05,487 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,488 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,488 ^~ 2022-12-04T16:13:05,489 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-04T16:13:05,489 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,490 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,490 ^~ 2022-12-04T16:13:05,495 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-04T16:13:05,496 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,496 if (status != eslOK || nres != W) { 2022-12-04T16:13:05,497 ^~ 2022-12-04T16:13:05,498 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,498 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,498 ^~ 2022-12-04T16:13:05,524 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-04T16:13:05,525 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,525 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-04T16:13:05,526 ^ 2022-12-04T16:13:05,531 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,532 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-04T16:13:05,532 ^~ 2022-12-04T16:13:05,534 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-04T16:13:05,535 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,535 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-04T16:13:05,535 ^ 2022-12-04T16:13:05,536 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,536 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T16:13:05,537 ^~ 2022-12-04T16:13:05,537 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,538 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T16:13:05,538 ^ 2022-12-04T16:13:05,539 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,539 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-04T16:13:05,539 ^ 2022-12-04T16:13:05,540 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,541 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T16:13:05,541 ^ 2022-12-04T16:13:05,541 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,542 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-04T16:13:05,542 ^ 2022-12-04T16:13:05,553 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,554 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-04T16:13:05,554 ^ 2022-12-04T16:13:05,554 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,555 if (inx < volume->end_seq) break; 2022-12-04T16:13:05,555 ^ 2022-12-04T16:13:05,556 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,557 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-04T16:13:05,557 ^~ 2022-12-04T16:13:05,558 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,558 if (ncbi->index_start == -1 || inx > end) { 2022-12-04T16:13:05,558 ^~ 2022-12-04T16:13:05,559 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,559 if (ncbi->index_start == -1 || inx > end) { 2022-12-04T16:13:05,560 ^ 2022-12-04T16:13:05,560 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,561 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T16:13:05,561 ^~ 2022-12-04T16:13:05,562 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,562 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T16:13:05,563 ^~ 2022-12-04T16:13:05,574 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,574 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-04T16:13:05,575 ^~ 2022-12-04T16:13:05,575 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-04T16:13:05,576 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,576 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,577 ^~ 2022-12-04T16:13:05,577 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,578 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T16:13:05,578 ^~ 2022-12-04T16:13:05,579 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,579 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T16:13:05,580 ^~ 2022-12-04T16:13:05,580 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-04T16:13:05,581 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,581 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,582 ^~ 2022-12-04T16:13:05,582 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,593 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T16:13:05,594 ^~ 2022-12-04T16:13:05,594 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,595 if (ncbi->seq_apos - sq->doff < size) { 2022-12-04T16:13:05,595 ^ 2022-12-04T16:13:05,596 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-04T16:13:05,596 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,597 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,597 ^~ 2022-12-04T16:13:05,598 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,598 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-04T16:13:05,598 ^~ 2022-12-04T16:13:05,599 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-04T16:13:05,600 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,600 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-04T16:13:05,601 ^~ 2022-12-04T16:13:05,604 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,605 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-04T16:13:05,606 ^~ 2022-12-04T16:13:05,618 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-04T16:13:05,619 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,620 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T16:13:05,620 ^ 2022-12-04T16:13:05,621 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,621 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T16:13:05,622 ^ 2022-12-04T16:13:05,623 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,623 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T16:13:05,624 ^~ 2022-12-04T16:13:05,625 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-04T16:13:05,626 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,626 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-04T16:13:05,627 ^ 2022-12-04T16:13:05,627 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,628 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-04T16:13:05,628 ^ 2022-12-04T16:13:05,629 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:05,629 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-04T16:13:05,630 ^~ 2022-12-04T16:13:05,636 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-04T16:13:05,637 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:05,638 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-04T16:13:05,638 ^~ 2022-12-04T16:13:06,877 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-04T16:13:06,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-04T16:13:07,318 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-04T16:13:07,319 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:07,320 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-04T16:13:07,320 ^~ 2022-12-04T16:13:07,521 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-04T16:13:07,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-04T16:13:07,708 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-04T16:13:07,711 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-04T16:13:08,180 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-04T16:13:08,183 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-04T16:13:08,636 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-04T16:13:08,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-04T16:13:09,796 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-04T16:13:09,799 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-04T16:13:10,985 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-04T16:13:10,988 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-04T16:13:11,173 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-04T16:13:11,174 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-04T16:13:11,327 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-04T16:13:11,328 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:11,328 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-04T16:13:11,329 ^ 2022-12-04T16:13:11,603 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-04T16:13:11,604 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-04T16:13:12,054 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-04T16:13:12,056 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-04T16:13:12,261 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-04T16:13:12,262 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-04T16:13:12,717 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-04T16:13:12,718 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T16:13:12,719 for (pos = 0; pos < sq->n; pos++) 2022-12-04T16:13:12,719 ^ 2022-12-04T16:13:12,721 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-04T16:13:12,722 for (pos = 1; pos <= sq->n; pos++) 2022-12-04T16:13:12,722 ^~ 2022-12-04T16:13:14,648 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-04T16:13:14,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-04T16:13:14,773 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-04T16:13:14,775 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-04T16:13:15,148 In file included from vendor/easel/esl_hmm.c:9: 2022-12-04T16:13:15,149 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-04T16:13:15,149 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:15,150 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T16:13:15,150 ^ 2022-12-04T16:13:15,151 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T16:13:15,151 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T16:13:15,152 ^~~~~~~ 2022-12-04T16:13:15,153 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:13:15,153 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T16:13:15,154 ^~~ 2022-12-04T16:13:15,155 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T16:13:15,155 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-04T16:13:15,156 ^~~~~~~ 2022-12-04T16:13:15,626 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-04T16:13:15,628 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:13:15,628 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-04T16:13:15,629 ~~~~^~~~~~~ 2022-12-04T16:13:15,846 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-04T16:13:15,848 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-04T16:13:16,318 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-04T16:13:16,320 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:13:16,320 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-04T16:13:16,321 ^~~~~~~~~~~~~~~~ 2022-12-04T16:13:17,008 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-04T16:13:17,009 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-04T16:13:17,360 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-04T16:13:17,362 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:17,363 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-04T16:13:17,364 ^~ 2022-12-04T16:13:18,149 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-04T16:13:18,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-04T16:13:18,987 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-04T16:13:18,988 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:13:18,988 if (opt_fx) *opt_fx = fx; 2022-12-04T16:13:18,989 ~~~~~~~~^~~~ 2022-12-04T16:13:18,990 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:13:18,991 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-04T16:13:18,991 ~~^~~ 2022-12-04T16:13:18,992 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-04T16:13:18,992 double ax,bx,cx; 2022-12-04T16:13:18,993 ^~ 2022-12-04T16:13:18,994 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-04T16:13:18,995 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-04T16:13:18,995 ~^~~~~~~~~~~~~ 2022-12-04T16:13:19,003 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-04T16:13:19,004 double ax,bx,cx; 2022-12-04T16:13:19,004 ^~ 2022-12-04T16:13:19,156 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-04T16:13:19,158 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-04T16:13:19,359 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-04T16:13:19,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-04T16:13:19,373 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-04T16:13:19,378 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-04T16:13:19,821 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-04T16:13:19,822 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:19,823 if (alphatype != dd->abc_r->type) 2022-12-04T16:13:19,824 ^~ 2022-12-04T16:13:19,843 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-04T16:13:19,844 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:19,844 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-04T16:13:19,845 ^ 2022-12-04T16:13:19,846 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:19,846 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-04T16:13:19,846 ^ 2022-12-04T16:13:19,847 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:19,847 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-04T16:13:19,848 ^ 2022-12-04T16:13:19,848 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:19,849 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-04T16:13:19,849 ^ 2022-12-04T16:13:19,852 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:19,853 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-04T16:13:19,853 ^~ 2022-12-04T16:13:19,854 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:19,855 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-04T16:13:19,855 ^~ 2022-12-04T16:13:19,856 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:19,856 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T16:13:19,857 ^~ 2022-12-04T16:13:19,857 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:19,858 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-04T16:13:19,858 ^~ 2022-12-04T16:13:19,928 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-04T16:13:19,929 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T16:13:19,930 } 2022-12-04T16:13:19,930 ^ 2022-12-04T16:13:19,943 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-04T16:13:19,944 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-04T16:13:19,945 } 2022-12-04T16:13:19,945 ^ 2022-12-04T16:13:20,198 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-04T16:13:20,200 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-04T16:13:20,225 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-04T16:13:20,228 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-04T16:13:20,491 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-04T16:13:20,493 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-04T16:13:20,888 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-04T16:13:20,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-04T16:13:21,112 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-04T16:13:21,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-04T16:13:21,890 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-04T16:13:21,892 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-04T16:13:21,984 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-04T16:13:21,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-04T16:13:22,594 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-04T16:13:22,596 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-04T16:13:23,956 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-04T16:13:23,958 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-04T16:13:24,096 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-04T16:13:24,098 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-04T16:13:24,196 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-04T16:13:24,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-04T16:13:24,231 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-04T16:13:24,232 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-04T16:13:24,541 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-04T16:13:24,542 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,542 for (h = 0; h < kh->hashsize; h++) 2022-12-04T16:13:24,543 ^ 2022-12-04T16:13:24,543 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-04T16:13:24,544 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,544 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T16:13:24,545 ^ 2022-12-04T16:13:24,545 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-04T16:13:24,546 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,546 for (h = 0; h < kh->hashsize; h++) 2022-12-04T16:13:24,547 ^ 2022-12-04T16:13:24,551 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-04T16:13:24,551 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,552 if (kh->nkeys > 3*kh->hashsize) 2022-12-04T16:13:24,552 ^ 2022-12-04T16:13:24,555 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-04T16:13:24,556 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,556 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T16:13:24,557 ^ 2022-12-04T16:13:24,561 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-04T16:13:24,561 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:24,562 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-04T16:13:24,562 ^ 2022-12-04T16:13:24,691 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-04T16:13:24,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-04T16:13:25,415 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-04T16:13:25,417 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-04T16:13:25,606 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-04T16:13:25,608 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-04T16:13:25,693 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-04T16:13:25,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-04T16:13:25,832 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-04T16:13:25,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-04T16:13:26,459 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-04T16:13:26,461 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-04T16:13:26,496 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-04T16:13:26,498 creating build/temp.linux-armv7l-cpython-37/build 2022-12-04T16:13:26,499 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-04T16:13:26,502 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-04T16:13:27,009 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-04T16:13:27,010 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:27,011 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-04T16:13:27,012 ^~ 2022-12-04T16:13:27,043 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-04T16:13:27,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-04T16:13:30,627 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-04T16:13:30,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-04T16:13:34,042 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-04T16:13:34,043 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-04T16:13:35,079 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-04T16:13:35,612 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-04T16:13:35,621 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-04T16:13:35,622 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-04T16:13:35,623 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-04T16:13:35,625 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-04T16:13:35,626 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-04T16:13:35,626 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-04T16:13:35,627 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-04T16:13:35,627 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-04T16:13:35,629 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-04T16:13:35,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-04T16:13:35,656 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-04T16:13:36,052 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-04T16:13:36,052 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,053 #error "No vector implementation enabled" 2022-12-04T16:13:36,053 ^~~~~ 2022-12-04T16:13:36,054 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,055 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,056 ^~~~~~ 2022-12-04T16:13:36,056 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,057 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,057 ^~~~~~ 2022-12-04T16:13:36,058 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,059 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,059 ^~~~~~ 2022-12-04T16:13:36,060 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,060 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,061 ^~~~~~ 2022-12-04T16:13:36,062 In file included from vendor/hmmer/src/errors.c:19: 2022-12-04T16:13:36,062 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,063 #error "No vector implementation enabled" 2022-12-04T16:13:36,065 ^~~~~ 2022-12-04T16:13:36,066 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,066 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,067 ^~~~~~~~~~~ 2022-12-04T16:13:36,068 P7_PROFILE 2022-12-04T16:13:36,071 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,072 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,073 ^~~~~~ 2022-12-04T16:13:36,079 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,080 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,080 ^~~~~~~~~~~ 2022-12-04T16:13:36,081 P7_PROFILE 2022-12-04T16:13:36,082 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,082 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,086 ^~~~~~ 2022-12-04T16:13:36,088 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,088 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,089 ^~~~~~ 2022-12-04T16:13:36,090 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,091 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,091 ^~~~~~ 2022-12-04T16:13:36,092 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,097 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,104 ^~~~~~~~~~~ 2022-12-04T16:13:36,105 P7_PROFILE 2022-12-04T16:13:36,106 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,107 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,108 ^~~~~~~~~~~ 2022-12-04T16:13:36,108 P7_PROFILE 2022-12-04T16:13:36,109 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,110 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,111 ^~~~~~~~~~~ 2022-12-04T16:13:36,112 P7_PROFILE 2022-12-04T16:13:36,112 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,117 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,127 ^~~~~~~~~~~ 2022-12-04T16:13:36,128 P7_PROFILE 2022-12-04T16:13:36,128 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,129 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,130 ^~~~~~~~~~~ 2022-12-04T16:13:36,130 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,131 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,132 ^~~~~~~~~~~ 2022-12-04T16:13:36,132 P7_PROFILE 2022-12-04T16:13:36,133 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,134 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,135 ^~~~~~~~~~~ 2022-12-04T16:13:36,135 P7_PROFILE 2022-12-04T16:13:36,136 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,137 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,137 ^~~~~~~~~~~ 2022-12-04T16:13:36,138 P7_PROFILE 2022-12-04T16:13:36,139 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,139 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,140 ^~~~~~~~~~~ 2022-12-04T16:13:36,140 P7_PROFILE 2022-12-04T16:13:36,141 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,141 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,141 ^~~~~~~~~~~ 2022-12-04T16:13:36,142 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,142 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,143 ^~~~~~~~~~~ 2022-12-04T16:13:36,165 P7_PROFILE 2022-12-04T16:13:36,165 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,166 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,166 ^~~~~~ 2022-12-04T16:13:36,167 P7_GMX 2022-12-04T16:13:36,167 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,168 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,168 ^~~~~~~~~~~ 2022-12-04T16:13:36,168 P7_PROFILE 2022-12-04T16:13:36,169 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,169 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,170 ^~~~~~ 2022-12-04T16:13:36,171 P7_GMX 2022-12-04T16:13:36,172 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,173 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,183 ^~~~~~~~~~~ 2022-12-04T16:13:36,184 P7_PROFILE 2022-12-04T16:13:36,185 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,185 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,185 ^~~~~~ 2022-12-04T16:13:36,186 P7_GMX 2022-12-04T16:13:36,187 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,187 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,188 ^~~~~~ 2022-12-04T16:13:36,188 P7_GMX 2022-12-04T16:13:36,189 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,190 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,191 ^~~~~~~~~~~ 2022-12-04T16:13:36,192 P7_PROFILE 2022-12-04T16:13:36,192 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,204 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,205 ^~~~~~ 2022-12-04T16:13:36,205 P7_GMX 2022-12-04T16:13:36,206 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,206 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,207 ^~~~~~~~~~~ 2022-12-04T16:13:36,209 P7_PROFILE 2022-12-04T16:13:36,209 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,210 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,211 ^~~~~~ 2022-12-04T16:13:36,212 P7_GMX 2022-12-04T16:13:36,223 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,224 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,225 ^~~~~~~~~~~ 2022-12-04T16:13:36,225 P7_PROFILE 2022-12-04T16:13:36,226 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,226 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,227 ^~~~~~ 2022-12-04T16:13:36,227 P7_GMX 2022-12-04T16:13:36,228 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,228 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,228 ^~~~~~~~~~~ 2022-12-04T16:13:36,229 P7_PROFILE 2022-12-04T16:13:36,229 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,230 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,230 ^~~~~~ 2022-12-04T16:13:36,231 P7_GMX 2022-12-04T16:13:36,231 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,232 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,232 ^~~~~~~~~~~ 2022-12-04T16:13:36,243 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,244 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,245 ^~~~~~~~~~~ 2022-12-04T16:13:36,245 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,246 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,247 ^~~~~~~~~~~ 2022-12-04T16:13:36,247 P7_PROFILE 2022-12-04T16:13:36,248 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,249 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,249 ^~~~~~~~~~~ 2022-12-04T16:13:36,250 P7_PROFILE 2022-12-04T16:13:36,251 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,251 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,252 ^~~~~~~~~~~ 2022-12-04T16:13:36,252 P7_PROFILE 2022-12-04T16:13:36,263 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,264 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,264 ^~~~~~~~~~~ 2022-12-04T16:13:36,265 P7_PROFILE 2022-12-04T16:13:36,266 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,267 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,267 ^~~~~~~~~~~ 2022-12-04T16:13:36,268 P7_PROFILE 2022-12-04T16:13:36,268 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,269 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,269 ^~~~~~~~~~~ 2022-12-04T16:13:36,270 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,270 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,271 ^~~~~~~~~~~ 2022-12-04T16:13:36,271 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,272 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:36,273 ^~~~~~~~~~~ 2022-12-04T16:13:36,283 P7_PROFILE 2022-12-04T16:13:36,284 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,285 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,285 ^~~~~~~~~~~ 2022-12-04T16:13:36,286 P7_PROFILE 2022-12-04T16:13:36,286 In file included from vendor/hmmer/src/build.c:32: 2022-12-04T16:13:36,287 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,287 #error "No vector implementation enabled" 2022-12-04T16:13:36,288 ^~~~~ 2022-12-04T16:13:36,288 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,288 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,289 ^~~~~~~~~~~ 2022-12-04T16:13:36,289 P7_PROFILE 2022-12-04T16:13:36,290 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,290 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,290 ^~~~~~ 2022-12-04T16:13:36,291 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,291 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,291 ^~~~~~ 2022-12-04T16:13:36,292 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,293 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,301 ^~~~~~ 2022-12-04T16:13:36,301 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,302 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,302 ^~~~~~ 2022-12-04T16:13:36,303 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,303 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,303 ^~~~~~~~~~~ 2022-12-04T16:13:36,304 P7_PROFILE 2022-12-04T16:13:36,304 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,305 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:36,305 ^~~~~~~~~~~ 2022-12-04T16:13:36,306 P7_PROFILE 2022-12-04T16:13:36,306 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,307 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,307 ^~~~~~~~~~~ 2022-12-04T16:13:36,308 P7_PROFILE 2022-12-04T16:13:36,308 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,309 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,309 ^~~~~~~~~~~ 2022-12-04T16:13:36,310 P7_PROFILE 2022-12-04T16:13:36,310 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,311 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,312 ^~~~~~~~~~~ 2022-12-04T16:13:36,312 P7_PROFILE 2022-12-04T16:13:36,312 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,333 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,334 ^~~~~~~~~~~ 2022-12-04T16:13:36,334 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-04T16:13:36,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-04T16:13:36,335 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-04T16:13:36,336 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,336 #error "No vector implementation enabled" 2022-12-04T16:13:36,337 ^~~~~ 2022-12-04T16:13:36,337 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,338 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,338 ^~~~~~ 2022-12-04T16:13:36,339 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,339 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,340 ^~~~~~ 2022-12-04T16:13:36,340 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,341 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,341 ^~~~~~ 2022-12-04T16:13:36,342 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,343 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,344 ^~~~~~ 2022-12-04T16:13:36,345 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,345 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,346 ^~~~~~~~~~~ 2022-12-04T16:13:36,346 P7_PROFILE 2022-12-04T16:13:36,347 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,347 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,348 ^~~~~~~~~~~ 2022-12-04T16:13:36,348 P7_PROFILE 2022-12-04T16:13:36,349 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,349 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,350 ^~~~~~~~~~~ 2022-12-04T16:13:36,351 P7_PROFILE 2022-12-04T16:13:36,351 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,351 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,352 ^~~~~~~~~~~ 2022-12-04T16:13:36,352 P7_PROFILE 2022-12-04T16:13:36,361 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,361 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,362 ^~~~~~~~~~~ 2022-12-04T16:13:36,362 P7_PROFILE 2022-12-04T16:13:36,363 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,381 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,381 ^~~~~~~~~~~ 2022-12-04T16:13:36,382 P7_PROFILE 2022-12-04T16:13:36,382 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,383 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,383 ^~~~~~~~~~~ 2022-12-04T16:13:36,383 P7_PROFILE 2022-12-04T16:13:36,384 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,384 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,384 ^~~~~~~~~~~ 2022-12-04T16:13:36,385 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,385 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,385 ^~~~~~ 2022-12-04T16:13:36,386 P7_GMX 2022-12-04T16:13:36,386 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,387 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,387 ^~~~~~~~~~~ 2022-12-04T16:13:36,388 P7_PROFILE 2022-12-04T16:13:36,388 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-04T16:13:36,389 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,389 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,390 ^~~~~~~~~~~ 2022-12-04T16:13:36,390 P7_PROFILE 2022-12-04T16:13:36,390 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-04T16:13:36,391 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,391 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,392 ^~~~~~~~~~~ 2022-12-04T16:13:36,392 P7_PROFILE 2022-12-04T16:13:36,392 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,398 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,399 ^~~~~~ 2022-12-04T16:13:36,400 P7_GMX 2022-12-04T16:13:36,400 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,401 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,401 ^~~~~~ 2022-12-04T16:13:36,402 P7_GMX 2022-12-04T16:13:36,402 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,403 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,403 ^~~~~~ 2022-12-04T16:13:36,404 P7_GMX 2022-12-04T16:13:36,404 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,405 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,405 ^~~~~~ 2022-12-04T16:13:36,405 P7_GMX 2022-12-04T16:13:36,406 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,406 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,406 ^~~~~~ 2022-12-04T16:13:36,407 P7_GMX 2022-12-04T16:13:36,407 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,408 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,408 ^~~~~~ 2022-12-04T16:13:36,409 P7_GMX 2022-12-04T16:13:36,409 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,409 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,410 ^~~~~~ 2022-12-04T16:13:36,410 P7_GMX 2022-12-04T16:13:36,411 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,411 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,412 ^~~~~~~~~~~ 2022-12-04T16:13:36,412 P7_PROFILE 2022-12-04T16:13:36,413 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,413 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,414 ^~~~~~~~~~~ 2022-12-04T16:13:36,414 P7_PROFILE 2022-12-04T16:13:36,415 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,415 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,415 ^~~~~~~~~~~ 2022-12-04T16:13:36,416 P7_PROFILE 2022-12-04T16:13:36,417 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,417 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,418 ^~~~~~~~~~~ 2022-12-04T16:13:36,418 P7_PROFILE 2022-12-04T16:13:36,419 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,419 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,420 ^~~~~~~~~~~ 2022-12-04T16:13:36,420 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,421 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,421 ^~~~~~~~~~~ 2022-12-04T16:13:36,422 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,422 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,423 ^~~~~~~~~~~ 2022-12-04T16:13:36,423 P7_PROFILE 2022-12-04T16:13:36,424 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,424 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,425 ^~~~~~~~~~~ 2022-12-04T16:13:36,425 P7_PROFILE 2022-12-04T16:13:36,426 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,426 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,427 ^~~~~~~~~~~ 2022-12-04T16:13:36,427 P7_PROFILE 2022-12-04T16:13:36,428 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,428 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:36,429 ^~~~~~~~~~~ 2022-12-04T16:13:36,429 P7_PROFILE 2022-12-04T16:13:36,430 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,430 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,431 ^~~~~~~~~~~ 2022-12-04T16:13:36,431 P7_PROFILE 2022-12-04T16:13:36,432 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,432 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,433 ^~~~~~~~~~~ 2022-12-04T16:13:36,433 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,433 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,434 ^~~~~~~~~~~ 2022-12-04T16:13:36,434 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,435 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,435 ^~~~~~~~~~~ 2022-12-04T16:13:36,436 P7_PROFILE 2022-12-04T16:13:36,436 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,437 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,437 ^~~~~~~~~~~ 2022-12-04T16:13:36,437 P7_PROFILE 2022-12-04T16:13:36,438 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,438 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:36,439 ^~~~~~~~~~~ 2022-12-04T16:13:36,439 P7_PROFILE 2022-12-04T16:13:36,440 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-04T16:13:36,440 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-04T16:13:36,440 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-04T16:13:36,441 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-04T16:13:36,491 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-04T16:13:36,491 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-04T16:13:36,516 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-04T16:13:36,518 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-04T16:13:36,691 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-04T16:13:36,691 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,692 #error "No vector implementation enabled" 2022-12-04T16:13:36,692 ^~~~~ 2022-12-04T16:13:36,695 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,695 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,696 ^~~~~~ 2022-12-04T16:13:36,696 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,697 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,705 ^~~~~~ 2022-12-04T16:13:36,706 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,706 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,707 ^~~~~~ 2022-12-04T16:13:36,707 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,708 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,709 ^~~~~~ 2022-12-04T16:13:36,709 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-04T16:13:36,709 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,716 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,717 ^~~~~~~~~~~ 2022-12-04T16:13:36,717 P7_PROFILE 2022-12-04T16:13:36,718 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-04T16:13:36,718 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,719 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,719 ^~~~~~~~~~~ 2022-12-04T16:13:36,720 P7_PROFILE 2022-12-04T16:13:36,720 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,720 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,729 ^~~~~~~~~~~ 2022-12-04T16:13:36,738 P7_PROFILE 2022-12-04T16:13:36,739 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,739 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,740 ^~~~~~~~~~~ 2022-12-04T16:13:36,740 P7_PROFILE 2022-12-04T16:13:36,741 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,741 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,742 ^~~~~~~~~~~ 2022-12-04T16:13:36,742 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,743 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,744 ^~~~~~~~~~~ 2022-12-04T16:13:36,744 P7_PROFILE 2022-12-04T16:13:36,745 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-04T16:13:36,745 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-04T16:13:36,746 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,747 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,747 ^~~~~~~~~~~ 2022-12-04T16:13:36,747 P7_PROFILE 2022-12-04T16:13:36,748 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,748 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,748 ^~~~~~~~~~~ 2022-12-04T16:13:36,749 P7_PROFILE 2022-12-04T16:13:36,749 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,749 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,750 ^~~~~~ 2022-12-04T16:13:36,750 P7_GMX 2022-12-04T16:13:36,751 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,752 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,752 ^~~~~~ 2022-12-04T16:13:36,756 P7_GMX 2022-12-04T16:13:36,764 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,764 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,765 ^~~~~~ 2022-12-04T16:13:36,766 P7_GMX 2022-12-04T16:13:36,767 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,768 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,768 ^~~~~~ 2022-12-04T16:13:36,769 P7_GMX 2022-12-04T16:13:36,770 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,771 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,772 ^~~~~~~~~~~ 2022-12-04T16:13:36,773 P7_PROFILE 2022-12-04T16:13:36,774 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,775 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,776 ^~~~~~~~~~~ 2022-12-04T16:13:36,776 P7_PROFILE 2022-12-04T16:13:36,777 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,778 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,779 ^~~~~~~~~~~ 2022-12-04T16:13:36,780 P7_PROFILE 2022-12-04T16:13:36,780 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,781 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,782 ^~~~~~~~~~~ 2022-12-04T16:13:36,783 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,783 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,784 ^~~~~~~~~~~ 2022-12-04T16:13:36,785 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,786 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,787 ^~~~~~~~~~~ 2022-12-04T16:13:36,788 P7_PROFILE 2022-12-04T16:13:36,788 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,789 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,789 ^~~~~~~~~~~ 2022-12-04T16:13:36,790 P7_PROFILE 2022-12-04T16:13:36,790 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,791 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:36,792 ^~~~~~~~~~~ 2022-12-04T16:13:36,793 P7_PROFILE 2022-12-04T16:13:36,837 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-04T16:13:36,838 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-04T16:13:36,892 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-04T16:13:36,893 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:36,894 #error "No vector implementation enabled" 2022-12-04T16:13:36,894 ^~~~~ 2022-12-04T16:13:36,895 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,896 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:36,896 ^~~~~~ 2022-12-04T16:13:36,897 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,897 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:36,897 ^~~~~~ 2022-12-04T16:13:36,898 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,899 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:36,899 ^~~~~~ 2022-12-04T16:13:36,900 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:36,900 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:36,901 ^~~~~~ 2022-12-04T16:13:36,902 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,902 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:36,903 ^~~~~~~~~~~ 2022-12-04T16:13:36,904 P7_PROFILE 2022-12-04T16:13:36,919 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,919 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:36,920 ^~~~~~~~~~~ 2022-12-04T16:13:36,920 P7_PROFILE 2022-12-04T16:13:36,921 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,922 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:36,922 ^~~~~~~~~~~ 2022-12-04T16:13:36,923 P7_PROFILE 2022-12-04T16:13:36,924 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,924 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:36,924 ^~~~~~~~~~~ 2022-12-04T16:13:36,925 P7_PROFILE 2022-12-04T16:13:36,925 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,926 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:36,927 ^~~~~~~~~~~ 2022-12-04T16:13:36,927 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,928 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:36,929 ^~~~~~~~~~~ 2022-12-04T16:13:36,929 P7_PROFILE 2022-12-04T16:13:36,930 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,931 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:36,932 ^~~~~~~~~~~ 2022-12-04T16:13:36,932 P7_PROFILE 2022-12-04T16:13:36,943 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,944 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,945 ^~~~~~~~~~~ 2022-12-04T16:13:36,945 P7_PROFILE 2022-12-04T16:13:36,946 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,946 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,947 ^~~~~~ 2022-12-04T16:13:36,947 P7_GMX 2022-12-04T16:13:36,948 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,948 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,948 ^~~~~~ 2022-12-04T16:13:36,949 P7_GMX 2022-12-04T16:13:36,949 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,950 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,950 ^~~~~~ 2022-12-04T16:13:36,951 P7_GMX 2022-12-04T16:13:36,951 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:36,952 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:36,952 ^~~~~~ 2022-12-04T16:13:36,973 P7_GMX 2022-12-04T16:13:36,974 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,975 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:36,976 ^~~~~~~~~~~ 2022-12-04T16:13:36,976 P7_PROFILE 2022-12-04T16:13:36,977 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,977 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:36,978 ^~~~~~~~~~~ 2022-12-04T16:13:36,979 P7_PROFILE 2022-12-04T16:13:36,979 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,980 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:36,980 ^~~~~~~~~~~ 2022-12-04T16:13:36,981 P7_PROFILE 2022-12-04T16:13:36,981 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,982 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:36,982 ^~~~~~~~~~~ 2022-12-04T16:13:36,993 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:36,994 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:36,994 ^~~~~~~~~~~ 2022-12-04T16:13:36,995 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,996 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:36,996 ^~~~~~~~~~~ 2022-12-04T16:13:36,997 P7_PROFILE 2022-12-04T16:13:36,998 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:36,998 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:36,998 ^~~~~~~~~~~ 2022-12-04T16:13:36,999 P7_PROFILE 2022-12-04T16:13:37,003 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,003 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,004 ^~~~~~~~~~~ 2022-12-04T16:13:37,005 P7_PROFILE 2022-12-04T16:13:37,055 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-04T16:13:37,057 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-04T16:13:37,166 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-04T16:13:37,166 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,167 #error "No vector implementation enabled" 2022-12-04T16:13:37,167 ^~~~~ 2022-12-04T16:13:37,168 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,168 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,169 ^~~~~~ 2022-12-04T16:13:37,170 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,171 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,172 ^~~~~~ 2022-12-04T16:13:37,173 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,173 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,174 ^~~~~~ 2022-12-04T16:13:37,175 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,176 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,176 ^~~~~~ 2022-12-04T16:13:37,177 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,178 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,179 ^~~~~~~~~~~ 2022-12-04T16:13:37,180 P7_PROFILE 2022-12-04T16:13:37,180 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,181 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,182 ^~~~~~~~~~~ 2022-12-04T16:13:37,183 P7_PROFILE 2022-12-04T16:13:37,191 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,192 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,196 ^~~~~~~~~~~ 2022-12-04T16:13:37,197 P7_PROFILE 2022-12-04T16:13:37,198 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,198 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,199 ^~~~~~~~~~~ 2022-12-04T16:13:37,200 P7_PROFILE 2022-12-04T16:13:37,200 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,201 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,202 ^~~~~~~~~~~ 2022-12-04T16:13:37,203 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,203 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,204 ^~~~~~~~~~~ 2022-12-04T16:13:37,205 P7_PROFILE 2022-12-04T16:13:37,206 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,206 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,207 ^~~~~~~~~~~ 2022-12-04T16:13:37,207 P7_PROFILE 2022-12-04T16:13:37,208 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,209 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,209 ^~~~~~~~~~~ 2022-12-04T16:13:37,210 P7_PROFILE 2022-12-04T16:13:37,211 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,211 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,212 ^~~~~~ 2022-12-04T16:13:37,221 P7_GMX 2022-12-04T16:13:37,222 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,223 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,223 ^~~~~~ 2022-12-04T16:13:37,224 P7_GMX 2022-12-04T16:13:37,225 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,226 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,226 ^~~~~~ 2022-12-04T16:13:37,227 P7_GMX 2022-12-04T16:13:37,227 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,228 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,229 ^~~~~~ 2022-12-04T16:13:37,230 P7_GMX 2022-12-04T16:13:37,230 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,231 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:37,232 ^~~~~~~~~~~ 2022-12-04T16:13:37,233 P7_PROFILE 2022-12-04T16:13:37,245 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,246 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:37,246 ^~~~~~~~~~~ 2022-12-04T16:13:37,247 P7_PROFILE 2022-12-04T16:13:37,247 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,248 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:37,249 ^~~~~~~~~~~ 2022-12-04T16:13:37,249 P7_PROFILE 2022-12-04T16:13:37,250 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,250 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:37,251 ^~~~~~~~~~~ 2022-12-04T16:13:37,251 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,252 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:37,261 ^~~~~~~~~~~ 2022-12-04T16:13:37,262 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-04T16:13:37,263 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,263 #error "No vector implementation enabled" 2022-12-04T16:13:37,264 ^~~~~ 2022-12-04T16:13:37,265 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,266 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:37,266 ^~~~~~~~~~~ 2022-12-04T16:13:37,267 P7_PROFILE 2022-12-04T16:13:37,267 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,268 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,269 ^~~~~~ 2022-12-04T16:13:37,270 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,270 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,271 ^~~~~~ 2022-12-04T16:13:37,271 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,272 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,273 ^~~~~~ 2022-12-04T16:13:37,283 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,285 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,286 ^~~~~~ 2022-12-04T16:13:37,286 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,287 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:37,287 ^~~~~~~~~~~ 2022-12-04T16:13:37,288 P7_PROFILE 2022-12-04T16:13:37,288 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,289 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,290 ^~~~~~~~~~~ 2022-12-04T16:13:37,291 P7_PROFILE 2022-12-04T16:13:37,291 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,292 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,303 ^~~~~~~~~~~ 2022-12-04T16:13:37,305 P7_PROFILE 2022-12-04T16:13:37,306 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,306 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,307 ^~~~~~~~~~~ 2022-12-04T16:13:37,308 P7_PROFILE 2022-12-04T16:13:37,309 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,310 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,310 ^~~~~~~~~~~ 2022-12-04T16:13:37,311 P7_PROFILE 2022-12-04T16:13:37,312 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,323 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,324 ^~~~~~~~~~~ 2022-12-04T16:13:37,325 P7_PROFILE 2022-12-04T16:13:37,326 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,326 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,327 ^~~~~~~~~~~ 2022-12-04T16:13:37,328 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,328 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,328 ^~~~~~~~~~~ 2022-12-04T16:13:37,329 P7_PROFILE 2022-12-04T16:13:37,329 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,330 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,330 ^~~~~~~~~~~ 2022-12-04T16:13:37,331 P7_PROFILE 2022-12-04T16:13:37,331 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,332 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,333 ^~~~~~~~~~~ 2022-12-04T16:13:37,350 P7_PROFILE 2022-12-04T16:13:37,350 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-04T16:13:37,350 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,351 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,351 ^~~~~~ 2022-12-04T16:13:37,352 P7_GMX 2022-12-04T16:13:37,352 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-04T16:13:37,352 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,353 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,354 ^~~~~~ 2022-12-04T16:13:37,355 P7_GMX 2022-12-04T16:13:37,355 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,356 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,356 ^~~~~~ 2022-12-04T16:13:37,357 P7_GMX 2022-12-04T16:13:37,358 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,359 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,359 ^~~~~~ 2022-12-04T16:13:37,360 P7_GMX 2022-12-04T16:13:37,360 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,361 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:37,362 ^~~~~~~~~~~ 2022-12-04T16:13:37,362 P7_PROFILE 2022-12-04T16:13:37,363 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,364 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:37,364 ^~~~~~~~~~~ 2022-12-04T16:13:37,365 P7_PROFILE 2022-12-04T16:13:37,366 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,367 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:37,368 ^~~~~~~~~~~ 2022-12-04T16:13:37,368 P7_PROFILE 2022-12-04T16:13:37,369 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,370 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:37,371 ^~~~~~~~~~~ 2022-12-04T16:13:37,372 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,373 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:37,374 ^~~~~~~~~~~ 2022-12-04T16:13:37,375 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,375 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:37,376 ^~~~~~~~~~~ 2022-12-04T16:13:37,377 P7_PROFILE 2022-12-04T16:13:37,377 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,378 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:37,378 ^~~~~~~~~~~ 2022-12-04T16:13:37,379 P7_PROFILE 2022-12-04T16:13:37,380 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,380 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,381 ^~~~~~~~~~~ 2022-12-04T16:13:37,381 P7_PROFILE 2022-12-04T16:13:37,382 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-04T16:13:37,383 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,384 #error "No vector implementation enabled" 2022-12-04T16:13:37,385 ^~~~~ 2022-12-04T16:13:37,386 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,386 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,387 ^~~~~~ 2022-12-04T16:13:37,389 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,389 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,390 ^~~~~~ 2022-12-04T16:13:37,391 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,391 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,392 ^~~~~~ 2022-12-04T16:13:37,393 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,393 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,394 ^~~~~~ 2022-12-04T16:13:37,394 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,395 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,395 ^~~~~~~~~~~ 2022-12-04T16:13:37,396 P7_PROFILE 2022-12-04T16:13:37,397 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,398 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,399 ^~~~~~~~~~~ 2022-12-04T16:13:37,399 P7_PROFILE 2022-12-04T16:13:37,400 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,400 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,401 ^~~~~~~~~~~ 2022-12-04T16:13:37,402 P7_PROFILE 2022-12-04T16:13:37,403 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-04T16:13:37,404 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-04T16:13:37,404 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,405 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,405 ^~~~~~~~~~~ 2022-12-04T16:13:37,406 P7_PROFILE 2022-12-04T16:13:37,406 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,407 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,407 ^~~~~~~~~~~ 2022-12-04T16:13:37,408 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,408 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,409 ^~~~~~~~~~~ 2022-12-04T16:13:37,410 P7_PROFILE 2022-12-04T16:13:37,411 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,412 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,412 ^~~~~~~~~~~ 2022-12-04T16:13:37,413 P7_PROFILE 2022-12-04T16:13:37,413 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,414 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,414 ^~~~~~~~~~~ 2022-12-04T16:13:37,414 P7_PROFILE 2022-12-04T16:13:37,415 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,416 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,416 ^~~~~~ 2022-12-04T16:13:37,417 P7_GMX 2022-12-04T16:13:37,417 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,417 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,418 ^~~~~~ 2022-12-04T16:13:37,418 P7_GMX 2022-12-04T16:13:37,419 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,419 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,420 ^~~~~~ 2022-12-04T16:13:37,420 P7_GMX 2022-12-04T16:13:37,421 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,421 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,421 ^~~~~~ 2022-12-04T16:13:37,422 P7_GMX 2022-12-04T16:13:37,422 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,423 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:37,423 ^~~~~~~~~~~ 2022-12-04T16:13:37,424 P7_PROFILE 2022-12-04T16:13:37,425 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,426 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:37,426 ^~~~~~~~~~~ 2022-12-04T16:13:37,427 P7_PROFILE 2022-12-04T16:13:37,427 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,428 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:37,428 ^~~~~~~~~~~ 2022-12-04T16:13:37,429 P7_PROFILE 2022-12-04T16:13:37,430 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,430 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:37,431 ^~~~~~~~~~~ 2022-12-04T16:13:37,432 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,432 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:37,433 ^~~~~~~~~~~ 2022-12-04T16:13:37,434 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,434 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:37,435 ^~~~~~~~~~~ 2022-12-04T16:13:37,435 P7_PROFILE 2022-12-04T16:13:37,436 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,437 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:37,438 ^~~~~~~~~~~ 2022-12-04T16:13:37,438 P7_PROFILE 2022-12-04T16:13:37,439 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,439 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,440 ^~~~~~~~~~~ 2022-12-04T16:13:37,440 P7_PROFILE 2022-12-04T16:13:37,441 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-04T16:13:37,441 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,442 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-04T16:13:37,442 ^~~~~~ 2022-12-04T16:13:37,443 P7_GMX 2022-12-04T16:13:37,444 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,444 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-04T16:13:37,445 ^~~~~~ 2022-12-04T16:13:37,445 P7_GMX 2022-12-04T16:13:37,446 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,447 P7_OPROFILE *om = NULL; 2022-12-04T16:13:37,447 ^~~~~~~~~~~ 2022-12-04T16:13:37,448 P7_PROFILE 2022-12-04T16:13:37,449 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,449 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T16:13:37,450 ^~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,450 p7_profile_Create 2022-12-04T16:13:37,451 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T16:13:37,451 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-04T16:13:37,452 ^ 2022-12-04T16:13:37,453 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,454 p7_oprofile_Convert(gm, om); 2022-12-04T16:13:37,454 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,455 p7_profile_Compare 2022-12-04T16:13:37,455 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,456 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T16:13:37,456 ^~~~~~~~~~~~~ 2022-12-04T16:13:37,456 p7_gmx_Create 2022-12-04T16:13:37,457 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T16:13:37,457 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T16:13:37,458 ^ 2022-12-04T16:13:37,458 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-04T16:13:37,459 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-04T16:13:37,459 ^ 2022-12-04T16:13:37,460 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,461 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-04T16:13:37,461 ^~~~~~~~~~~~~ 2022-12-04T16:13:37,462 p7_gmx_GrowTo 2022-12-04T16:13:37,463 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,464 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-04T16:13:37,465 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,465 p7_ReconfigLength 2022-12-04T16:13:37,467 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,468 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-04T16:13:37,469 ^~~~~~~~~~ 2022-12-04T16:13:37,469 p7_GForward 2022-12-04T16:13:37,471 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,472 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-04T16:13:37,473 ^~~~~~~~~~~ 2022-12-04T16:13:37,474 p7_GBackward 2022-12-04T16:13:37,475 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,476 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-04T16:13:37,476 ^~~~~~~~~~~ 2022-12-04T16:13:37,477 p7_GDecoding 2022-12-04T16:13:37,480 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,481 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-04T16:13:37,482 ^~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,483 p7_GOptimalAccuracy 2022-12-04T16:13:37,484 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,485 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-04T16:13:37,485 ^~~~~~~~~~ 2022-12-04T16:13:37,486 p7_GOATrace 2022-12-04T16:13:37,490 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,491 p7_omx_Reuse(oxf); 2022-12-04T16:13:37,492 ^~~~~~~~~~~~ 2022-12-04T16:13:37,493 p7_gmx_Reuse 2022-12-04T16:13:37,495 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,495 p7_omx_Destroy(oxf); 2022-12-04T16:13:37,496 ^~~~~~~~~~~~~~ 2022-12-04T16:13:37,497 p7_gmx_Destroy 2022-12-04T16:13:37,499 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T16:13:37,500 p7_oprofile_Destroy(om); 2022-12-04T16:13:37,501 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,501 p7_profile_Destroy 2022-12-04T16:13:37,629 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-04T16:13:37,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-04T16:13:37,686 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-04T16:13:37,686 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,687 #error "No vector implementation enabled" 2022-12-04T16:13:37,688 ^~~~~ 2022-12-04T16:13:37,689 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,689 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,690 ^~~~~~ 2022-12-04T16:13:37,691 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,692 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,693 ^~~~~~ 2022-12-04T16:13:37,693 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,694 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,694 ^~~~~~ 2022-12-04T16:13:37,695 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,696 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,697 ^~~~~~ 2022-12-04T16:13:37,697 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,698 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,699 ^~~~~~~~~~~ 2022-12-04T16:13:37,700 P7_PROFILE 2022-12-04T16:13:37,700 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,701 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,702 ^~~~~~~~~~~ 2022-12-04T16:13:37,703 P7_PROFILE 2022-12-04T16:13:37,713 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,714 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,715 ^~~~~~~~~~~ 2022-12-04T16:13:37,716 P7_PROFILE 2022-12-04T16:13:37,716 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,716 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,717 ^~~~~~~~~~~ 2022-12-04T16:13:37,718 P7_PROFILE 2022-12-04T16:13:37,719 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,720 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,720 ^~~~~~~~~~~ 2022-12-04T16:13:37,721 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,721 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,722 ^~~~~~~~~~~ 2022-12-04T16:13:37,722 P7_PROFILE 2022-12-04T16:13:37,723 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,724 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,724 ^~~~~~~~~~~ 2022-12-04T16:13:37,725 P7_PROFILE 2022-12-04T16:13:37,725 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,726 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,726 ^~~~~~~~~~~ 2022-12-04T16:13:37,726 P7_PROFILE 2022-12-04T16:13:37,729 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,730 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,731 ^~~~~~ 2022-12-04T16:13:37,731 P7_GMX 2022-12-04T16:13:37,732 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,733 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,734 ^~~~~~ 2022-12-04T16:13:37,735 P7_GMX 2022-12-04T16:13:37,735 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-04T16:13:37,736 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,736 #error "No vector implementation enabled" 2022-12-04T16:13:37,737 ^~~~~ 2022-12-04T16:13:37,738 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,738 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,739 ^~~~~~ 2022-12-04T16:13:37,739 P7_GMX 2022-12-04T16:13:37,740 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,740 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,741 ^~~~~~ 2022-12-04T16:13:37,742 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,742 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,743 ^~~~~~ 2022-12-04T16:13:37,743 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,744 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,744 ^~~~~~ 2022-12-04T16:13:37,744 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,745 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,746 ^~~~~~ 2022-12-04T16:13:37,746 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,747 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,747 ^~~~~~ 2022-12-04T16:13:37,748 P7_GMX 2022-12-04T16:13:37,749 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,749 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,750 ^~~~~~~~~~~ 2022-12-04T16:13:37,751 P7_PROFILE 2022-12-04T16:13:37,752 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,753 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,753 ^~~~~~~~~~~ 2022-12-04T16:13:37,754 P7_PROFILE 2022-12-04T16:13:37,754 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,755 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,755 ^~~~~~~~~~~ 2022-12-04T16:13:37,756 P7_PROFILE 2022-12-04T16:13:37,757 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,758 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,758 ^~~~~~~~~~~ 2022-12-04T16:13:37,759 P7_PROFILE 2022-12-04T16:13:37,760 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,761 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,762 ^~~~~~~~~~~ 2022-12-04T16:13:37,762 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,763 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:37,764 ^~~~~~~~~~~ 2022-12-04T16:13:37,764 P7_PROFILE 2022-12-04T16:13:37,766 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,767 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,768 ^~~~~~~~~~~ 2022-12-04T16:13:37,768 P7_PROFILE 2022-12-04T16:13:37,769 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,770 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:37,771 ^~~~~~~~~~~ 2022-12-04T16:13:37,771 P7_PROFILE 2022-12-04T16:13:37,772 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,772 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,774 ^~~~~~~~~~~ 2022-12-04T16:13:37,774 P7_PROFILE 2022-12-04T16:13:37,775 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,776 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:37,777 ^~~~~~~~~~~ 2022-12-04T16:13:37,777 P7_PROFILE 2022-12-04T16:13:37,778 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,778 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,779 ^~~~~~~~~~~ 2022-12-04T16:13:37,780 P7_PROFILE 2022-12-04T16:13:37,780 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,781 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,781 ^~~~~~ 2022-12-04T16:13:37,782 P7_GMX 2022-12-04T16:13:37,783 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,783 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,784 ^~~~~~ 2022-12-04T16:13:37,785 P7_GMX 2022-12-04T16:13:37,786 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,786 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,787 ^~~~~~ 2022-12-04T16:13:37,788 P7_GMX 2022-12-04T16:13:37,789 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,789 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:37,790 ^~~~~~~~~~~ 2022-12-04T16:13:37,790 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,791 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:37,791 ^~~~~~~~~~~ 2022-12-04T16:13:37,792 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,792 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:37,792 ^~~~~~~~~~~ 2022-12-04T16:13:37,793 P7_PROFILE 2022-12-04T16:13:37,794 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,794 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:37,795 ^~~~~~~~~~~ 2022-12-04T16:13:37,796 P7_PROFILE 2022-12-04T16:13:37,796 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,797 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,797 ^~~~~~ 2022-12-04T16:13:37,798 P7_GMX 2022-12-04T16:13:37,801 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,802 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:37,803 ^~~~~~~~~~~ 2022-12-04T16:13:37,804 P7_PROFILE 2022-12-04T16:13:37,808 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,809 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,810 ^~~~~~~~~~~ 2022-12-04T16:13:37,810 P7_PROFILE 2022-12-04T16:13:37,814 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,815 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:37,816 ^~~~~~~~~~~ 2022-12-04T16:13:37,817 P7_PROFILE 2022-12-04T16:13:37,818 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,819 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:37,820 ^~~~~~~~~~~ 2022-12-04T16:13:37,821 P7_PROFILE 2022-12-04T16:13:37,821 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,822 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:37,822 ^~~~~~~~~~~ 2022-12-04T16:13:37,823 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,823 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:37,824 ^~~~~~~~~~~ 2022-12-04T16:13:37,824 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,825 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:37,826 ^~~~~~~~~~~ 2022-12-04T16:13:37,826 P7_PROFILE 2022-12-04T16:13:37,827 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-04T16:13:37,827 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,828 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-04T16:13:37,828 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,829 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,829 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-04T16:13:37,830 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,830 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,831 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-04T16:13:37,831 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,832 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,832 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-04T16:13:37,833 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,834 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,835 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-04T16:13:37,836 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,836 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,836 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-04T16:13:37,837 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,837 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:37,838 if (ser_size != ptr - (*buf + *n)){ 2022-12-04T16:13:37,838 ^~ 2022-12-04T16:13:37,839 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-04T16:13:37,840 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,840 ret_obj->envsc = *((float *) &host_32bit); 2022-12-04T16:13:37,841 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,842 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,843 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-04T16:13:37,843 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,844 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,844 ret_obj->dombias = *((float *) &host_32bit); 2022-12-04T16:13:37,845 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,846 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,846 ret_obj->oasc = *((float *) &host_32bit); 2022-12-04T16:13:37,847 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,847 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,848 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:37,849 ^~~~~~~~~~~ 2022-12-04T16:13:37,849 P7_PROFILE 2022-12-04T16:13:37,850 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,851 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-04T16:13:37,851 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,852 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,853 ret_obj->lnP = *((double *) &host_64bit); 2022-12-04T16:13:37,853 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,854 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-04T16:13:37,855 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-04T16:13:37,855 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:37,856 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:37,858 if(ptr - (buf + *n) != obj_size){ 2022-12-04T16:13:37,858 ^~ 2022-12-04T16:13:37,859 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,859 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:37,860 ^~~~~~~~~~~ 2022-12-04T16:13:37,860 P7_PROFILE 2022-12-04T16:13:37,895 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-04T16:13:37,897 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-04T16:13:37,913 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-04T16:13:37,916 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-04T16:13:37,924 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-04T16:13:37,925 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:37,926 #error "No vector implementation enabled" 2022-12-04T16:13:37,926 ^~~~~ 2022-12-04T16:13:37,927 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,928 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:37,928 ^~~~~~ 2022-12-04T16:13:37,929 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,929 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:37,930 ^~~~~~ 2022-12-04T16:13:37,931 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,931 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:37,932 ^~~~~~ 2022-12-04T16:13:37,934 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:37,935 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:37,936 ^~~~~~ 2022-12-04T16:13:37,937 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,937 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:37,938 ^~~~~~~~~~~ 2022-12-04T16:13:37,940 P7_PROFILE 2022-12-04T16:13:37,953 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,955 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:37,956 ^~~~~~~~~~~ 2022-12-04T16:13:37,957 P7_PROFILE 2022-12-04T16:13:37,958 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,960 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:37,962 ^~~~~~~~~~~ 2022-12-04T16:13:37,966 P7_PROFILE 2022-12-04T16:13:37,969 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,970 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:37,973 ^~~~~~~~~~~ 2022-12-04T16:13:37,974 P7_PROFILE 2022-12-04T16:13:37,975 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:37,975 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:37,976 ^~~~~~~~~~~ 2022-12-04T16:13:37,977 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,977 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:37,978 ^~~~~~~~~~~ 2022-12-04T16:13:37,979 P7_PROFILE 2022-12-04T16:13:37,980 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,980 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:37,981 ^~~~~~~~~~~ 2022-12-04T16:13:37,981 P7_PROFILE 2022-12-04T16:13:37,981 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:37,982 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,982 ^~~~~~~~~~~ 2022-12-04T16:13:37,983 P7_PROFILE 2022-12-04T16:13:37,993 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,994 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,994 ^~~~~~ 2022-12-04T16:13:37,994 P7_GMX 2022-12-04T16:13:37,995 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,996 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,996 ^~~~~~ 2022-12-04T16:13:37,997 P7_GMX 2022-12-04T16:13:37,997 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:37,998 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:37,999 ^~~~~~ 2022-12-04T16:13:37,999 P7_GMX 2022-12-04T16:13:38,000 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,000 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,001 ^~~~~~ 2022-12-04T16:13:38,001 P7_GMX 2022-12-04T16:13:38,002 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,002 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:38,003 ^~~~~~~~~~~ 2022-12-04T16:13:38,020 P7_PROFILE 2022-12-04T16:13:38,020 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,021 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:38,021 ^~~~~~~~~~~ 2022-12-04T16:13:38,022 P7_PROFILE 2022-12-04T16:13:38,022 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,023 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:38,023 ^~~~~~~~~~~ 2022-12-04T16:13:38,024 P7_PROFILE 2022-12-04T16:13:38,024 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,024 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:38,025 ^~~~~~~~~~~ 2022-12-04T16:13:38,025 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,026 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:38,026 ^~~~~~~~~~~ 2022-12-04T16:13:38,027 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,027 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:38,028 ^~~~~~~~~~~ 2022-12-04T16:13:38,028 P7_PROFILE 2022-12-04T16:13:38,029 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,029 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:38,030 ^~~~~~~~~~~ 2022-12-04T16:13:38,030 P7_PROFILE 2022-12-04T16:13:38,031 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,031 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:38,032 ^~~~~~~~~~~ 2022-12-04T16:13:38,032 P7_PROFILE 2022-12-04T16:13:38,032 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-04T16:13:38,033 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,033 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-04T16:13:38,034 ^~~~~~~~~~~ 2022-12-04T16:13:38,034 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-04T16:13:38,035 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,035 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-04T16:13:38,036 ^~~~~~~~~~~ 2022-12-04T16:13:38,036 P7_PROFILE 2022-12-04T16:13:38,036 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-04T16:13:38,037 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,037 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T16:13:38,038 ^~~~~~~~~~~ 2022-12-04T16:13:38,038 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T16:13:38,039 if ( size <= 0 ) { \ 2022-12-04T16:13:38,039 ^~~~ 2022-12-04T16:13:38,040 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-04T16:13:38,040 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T16:13:38,041 ^~~~~~~~~~~ 2022-12-04T16:13:38,041 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T16:13:38,042 if ( size <= 0 ) { \ 2022-12-04T16:13:38,042 ^~~~ 2022-12-04T16:13:38,043 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T16:13:38,043 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T16:13:38,044 ^ 2022-12-04T16:13:38,044 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T16:13:38,045 if ( size <= 0 ) { \ 2022-12-04T16:13:38,046 ^~~~ 2022-12-04T16:13:38,046 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T16:13:38,047 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T16:13:38,048 ^ 2022-12-04T16:13:38,048 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T16:13:38,048 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-04T16:13:38,049 ^~~~ 2022-12-04T16:13:38,049 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-04T16:13:38,050 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-04T16:13:38,051 ^ 2022-12-04T16:13:38,051 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-04T16:13:38,052 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-04T16:13:38,052 ^~~~ 2022-12-04T16:13:38,053 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T16:13:38,054 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-04T16:13:38,055 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:38,055 p7_profile_Reuse 2022-12-04T16:13:38,056 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-04T16:13:38,056 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-04T16:13:38,057 ^~~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:38,057 p7_profile_Reuse 2022-12-04T16:13:38,058 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-04T16:13:38,058 if (om) p7_oprofile_Destroy(om); 2022-12-04T16:13:38,059 ^~~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:38,059 p7_profile_Destroy 2022-12-04T16:13:38,060 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-04T16:13:38,061 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,062 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T16:13:38,063 ^~~~~~~~~~~ 2022-12-04T16:13:38,063 P7_PROFILE 2022-12-04T16:13:38,064 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-04T16:13:38,064 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-04T16:13:38,065 ^ 2022-12-04T16:13:38,065 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,066 for (i = 0; i < cache->n; i++) 2022-12-04T16:13:38,066 ^ 2022-12-04T16:13:38,067 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-04T16:13:38,067 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-04T16:13:38,067 ^~~~~~~~~~~~~~~~~~ 2022-12-04T16:13:38,068 p7_profile_Sizeof 2022-12-04T16:13:38,068 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-04T16:13:38,069 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,069 P7_OPROFILE *om; 2022-12-04T16:13:38,070 ^~~~~~~~~~~ 2022-12-04T16:13:38,071 P7_PROFILE 2022-12-04T16:13:38,072 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,072 for (i = 0; i < cache->n; i++) 2022-12-04T16:13:38,072 ^ 2022-12-04T16:13:38,073 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-04T16:13:38,073 if (om->name) free(om->name); 2022-12-04T16:13:38,074 ^~ 2022-12-04T16:13:38,074 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-04T16:13:38,075 if (om->name) free(om->name); 2022-12-04T16:13:38,075 ^~ 2022-12-04T16:13:38,075 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-04T16:13:38,076 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-04T16:13:38,076 ^~ 2022-12-04T16:13:38,077 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-04T16:13:38,077 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,078 for (i = 0; i < cache->n; i++) 2022-12-04T16:13:38,078 ^ 2022-12-04T16:13:38,149 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-04T16:13:38,149 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:38,150 #error "No vector implementation enabled" 2022-12-04T16:13:38,150 ^~~~~ 2022-12-04T16:13:38,152 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,153 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:38,153 ^~~~~~ 2022-12-04T16:13:38,154 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,154 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:38,155 ^~~~~~ 2022-12-04T16:13:38,155 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,156 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:38,156 ^~~~~~ 2022-12-04T16:13:38,157 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,158 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:38,158 ^~~~~~ 2022-12-04T16:13:38,159 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,160 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:38,161 ^~~~~~~~~~~ 2022-12-04T16:13:38,162 P7_PROFILE 2022-12-04T16:13:38,163 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,164 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:38,165 ^~~~~~~~~~~ 2022-12-04T16:13:38,165 P7_PROFILE 2022-12-04T16:13:38,167 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,168 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:38,168 ^~~~~~~~~~~ 2022-12-04T16:13:38,169 P7_PROFILE 2022-12-04T16:13:38,170 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,171 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:38,171 ^~~~~~~~~~~ 2022-12-04T16:13:38,172 P7_PROFILE 2022-12-04T16:13:38,174 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,174 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:38,175 ^~~~~~~~~~~ 2022-12-04T16:13:38,179 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,180 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:38,181 ^~~~~~~~~~~ 2022-12-04T16:13:38,181 P7_PROFILE 2022-12-04T16:13:38,183 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,184 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:38,184 ^~~~~~~~~~~ 2022-12-04T16:13:38,185 P7_PROFILE 2022-12-04T16:13:38,188 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,188 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,189 ^~~~~~~~~~~ 2022-12-04T16:13:38,189 P7_PROFILE 2022-12-04T16:13:38,191 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,192 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,192 ^~~~~~ 2022-12-04T16:13:38,193 P7_GMX 2022-12-04T16:13:38,195 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,196 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,196 ^~~~~~ 2022-12-04T16:13:38,197 P7_GMX 2022-12-04T16:13:38,198 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,199 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,199 ^~~~~~ 2022-12-04T16:13:38,200 P7_GMX 2022-12-04T16:13:38,201 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,202 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,202 ^~~~~~ 2022-12-04T16:13:38,202 P7_GMX 2022-12-04T16:13:38,206 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,207 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:38,208 ^~~~~~~~~~~ 2022-12-04T16:13:38,208 P7_PROFILE 2022-12-04T16:13:38,210 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,210 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:38,211 ^~~~~~~~~~~ 2022-12-04T16:13:38,211 P7_PROFILE 2022-12-04T16:13:38,214 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,214 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:38,215 ^~~~~~~~~~~ 2022-12-04T16:13:38,215 P7_PROFILE 2022-12-04T16:13:38,216 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,217 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:38,217 ^~~~~~~~~~~ 2022-12-04T16:13:38,218 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,218 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:38,219 ^~~~~~~~~~~ 2022-12-04T16:13:38,219 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,220 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:38,220 ^~~~~~~~~~~ 2022-12-04T16:13:38,221 P7_PROFILE 2022-12-04T16:13:38,221 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,222 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:38,222 ^~~~~~~~~~~ 2022-12-04T16:13:38,222 P7_PROFILE 2022-12-04T16:13:38,228 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,229 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:38,230 ^~~~~~~~~~~ 2022-12-04T16:13:38,230 P7_PROFILE 2022-12-04T16:13:38,360 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-04T16:13:38,361 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:38,361 #error "No vector implementation enabled" 2022-12-04T16:13:38,362 ^~~~~ 2022-12-04T16:13:38,363 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,363 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:38,364 ^~~~~~ 2022-12-04T16:13:38,364 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,365 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:38,365 ^~~~~~ 2022-12-04T16:13:38,365 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,366 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:38,367 ^~~~~~ 2022-12-04T16:13:38,367 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,368 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:38,368 ^~~~~~ 2022-12-04T16:13:38,368 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-04T16:13:38,369 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-04T16:13:38,370 #error "No vector implementation enabled" 2022-12-04T16:13:38,370 ^~~~~ 2022-12-04T16:13:38,371 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,371 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-04T16:13:38,372 ^~~~~~ 2022-12-04T16:13:38,373 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,373 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:38,374 ^~~~~~~~~~~ 2022-12-04T16:13:38,375 P7_PROFILE 2022-12-04T16:13:38,375 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,376 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-04T16:13:38,377 ^~~~~~ 2022-12-04T16:13:38,377 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,378 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-04T16:13:38,378 ^~~~~~ 2022-12-04T16:13:38,379 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-04T16:13:38,380 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-04T16:13:38,380 ^~~~~~ 2022-12-04T16:13:38,381 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,381 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:38,382 ^~~~~~~~~~~ 2022-12-04T16:13:38,382 P7_PROFILE 2022-12-04T16:13:38,383 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,383 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-04T16:13:38,384 ^~~~~~~~~~~ 2022-12-04T16:13:38,384 P7_PROFILE 2022-12-04T16:13:38,385 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,385 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:38,385 ^~~~~~~~~~~ 2022-12-04T16:13:38,386 P7_PROFILE 2022-12-04T16:13:38,386 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,387 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-04T16:13:38,387 ^~~~~~~~~~~ 2022-12-04T16:13:38,388 P7_PROFILE 2022-12-04T16:13:38,388 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,389 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:38,389 ^~~~~~~~~~~ 2022-12-04T16:13:38,390 P7_PROFILE 2022-12-04T16:13:38,390 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,391 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-04T16:13:38,392 ^~~~~~~~~~~ 2022-12-04T16:13:38,392 P7_PROFILE 2022-12-04T16:13:38,393 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,394 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:38,394 ^~~~~~~~~~~ 2022-12-04T16:13:38,395 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,396 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-04T16:13:38,396 ^~~~~~~~~~~ 2022-12-04T16:13:38,397 P7_PROFILE 2022-12-04T16:13:38,398 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,398 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-04T16:13:38,398 ^~~~~~~~~~~ 2022-12-04T16:13:38,399 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,400 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:38,401 ^~~~~~~~~~~ 2022-12-04T16:13:38,401 P7_PROFILE 2022-12-04T16:13:38,402 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,403 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:38,404 ^~~~~~~~~~~ 2022-12-04T16:13:38,404 P7_PROFILE 2022-12-04T16:13:38,405 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,406 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-04T16:13:38,406 ^~~~~~~~~~~ 2022-12-04T16:13:38,407 P7_PROFILE 2022-12-04T16:13:38,408 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,408 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,409 ^~~~~~~~~~~ 2022-12-04T16:13:38,410 P7_PROFILE 2022-12-04T16:13:38,410 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,411 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-04T16:13:38,411 ^~~~~~~~~~~ 2022-12-04T16:13:38,411 P7_PROFILE 2022-12-04T16:13:38,412 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,412 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,413 ^~~~~~ 2022-12-04T16:13:38,414 P7_GMX 2022-12-04T16:13:38,415 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,415 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,416 ^~~~~~~~~~~ 2022-12-04T16:13:38,416 P7_PROFILE 2022-12-04T16:13:38,416 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,417 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,418 ^~~~~~ 2022-12-04T16:13:38,418 P7_GMX 2022-12-04T16:13:38,419 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,419 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,420 ^~~~~~ 2022-12-04T16:13:38,420 P7_GMX 2022-12-04T16:13:38,421 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,422 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,423 ^~~~~~ 2022-12-04T16:13:38,423 P7_GMX 2022-12-04T16:13:38,424 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,424 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,425 ^~~~~~ 2022-12-04T16:13:38,425 P7_GMX 2022-12-04T16:13:38,426 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,427 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,427 ^~~~~~ 2022-12-04T16:13:38,428 P7_GMX 2022-12-04T16:13:38,428 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,429 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,429 ^~~~~~ 2022-12-04T16:13:38,430 P7_GMX 2022-12-04T16:13:38,431 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-04T16:13:38,431 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-04T16:13:38,432 ^~~~~~ 2022-12-04T16:13:38,432 P7_GMX 2022-12-04T16:13:38,433 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,433 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:38,434 ^~~~~~~~~~~ 2022-12-04T16:13:38,434 P7_PROFILE 2022-12-04T16:13:38,435 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,435 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:38,436 ^~~~~~~~~~~ 2022-12-04T16:13:38,436 P7_PROFILE 2022-12-04T16:13:38,436 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,437 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-04T16:13:38,438 ^~~~~~~~~~~ 2022-12-04T16:13:38,438 P7_PROFILE 2022-12-04T16:13:38,439 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,439 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:38,439 ^~~~~~~~~~~ 2022-12-04T16:13:38,440 P7_PROFILE 2022-12-04T16:13:38,440 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,440 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:38,441 ^~~~~~~~~~~ 2022-12-04T16:13:38,442 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,442 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-04T16:13:38,443 ^~~~~~~~~~~ 2022-12-04T16:13:38,443 P7_PROFILE 2022-12-04T16:13:38,444 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,444 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:38,445 ^~~~~~~~~~~ 2022-12-04T16:13:38,445 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,445 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:38,446 ^~~~~~~~~~~ 2022-12-04T16:13:38,446 P7_PROFILE 2022-12-04T16:13:38,446 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,447 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-04T16:13:38,447 ^~~~~~~~~~~ 2022-12-04T16:13:38,448 P7_PROFILE 2022-12-04T16:13:38,448 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,449 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-04T16:13:38,449 ^~~~~~~~~~~ 2022-12-04T16:13:38,449 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-04T16:13:38,450 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-04T16:13:38,450 ^~~~~~~~~~~ 2022-12-04T16:13:38,451 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,451 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:38,451 ^~~~~~~~~~~ 2022-12-04T16:13:38,452 P7_PROFILE 2022-12-04T16:13:38,452 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,453 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-04T16:13:38,453 ^~~~~~~~~~~ 2022-12-04T16:13:38,454 P7_PROFILE 2022-12-04T16:13:38,454 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,454 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-04T16:13:38,455 ^~~~~~~~~~~ 2022-12-04T16:13:38,455 P7_PROFILE 2022-12-04T16:13:38,456 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,456 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:38,456 ^~~~~~~~~~~ 2022-12-04T16:13:38,457 P7_PROFILE 2022-12-04T16:13:38,457 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-04T16:13:38,457 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-04T16:13:38,458 ^~~~~~~~~~~ 2022-12-04T16:13:38,458 P7_PROFILE 2022-12-04T16:13:38,459 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-04T16:13:38,459 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,460 if (ranges[lo].lower > end) return -1; 2022-12-04T16:13:38,460 ^ 2022-12-04T16:13:38,460 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,461 if (ranges[hi].upper < start) return -1; 2022-12-04T16:13:38,461 ^ 2022-12-04T16:13:38,462 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,462 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-04T16:13:38,462 ^ 2022-12-04T16:13:38,463 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,463 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T16:13:38,464 ^~ 2022-12-04T16:13:38,464 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,465 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-04T16:13:38,465 ^~ 2022-12-04T16:13:38,465 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,466 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T16:13:38,466 ^~ 2022-12-04T16:13:38,466 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,467 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-04T16:13:38,467 ^~ 2022-12-04T16:13:38,468 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-04T16:13:38,468 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-04T16:13:38,469 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T16:13:38,469 ^~ 2022-12-04T16:13:38,469 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,470 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-04T16:13:38,470 ^~ 2022-12-04T16:13:38,471 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-04T16:13:38,471 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,471 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:13:38,472 ^ 2022-12-04T16:13:38,472 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:13:38,472 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T16:13:38,473 ^~~~~~~ 2022-12-04T16:13:38,473 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:13:38,474 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-04T16:13:38,474 ^~~ 2022-12-04T16:13:38,475 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-04T16:13:38,475 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-04T16:13:38,475 ^~~~~~~ 2022-12-04T16:13:38,476 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,476 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T16:13:38,476 ^ 2022-12-04T16:13:38,477 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T16:13:38,477 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T16:13:38,478 ^~~~~~~ 2022-12-04T16:13:38,478 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-04T16:13:38,478 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-04T16:13:38,479 ^~~ 2022-12-04T16:13:38,479 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-04T16:13:38,479 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-04T16:13:38,480 ^~~~~~~ 2022-12-04T16:13:38,480 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,480 for (j= start; j<=end; j++) 2022-12-04T16:13:38,481 ^~ 2022-12-04T16:13:38,481 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-04T16:13:38,482 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T16:13:38,482 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T16:13:38,483 ^~ 2022-12-04T16:13:38,483 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-04T16:13:38,483 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-04T16:13:38,484 ^~ 2022-12-04T16:13:38,484 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-04T16:13:38,485 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,485 for (i=0; iseq_count; i++) { 2022-12-04T16:13:38,485 ^ 2022-12-04T16:13:38,487 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,488 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-04T16:13:38,488 ^~ 2022-12-04T16:13:38,489 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,489 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-04T16:13:38,489 ^~ 2022-12-04T16:13:38,490 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,490 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-04T16:13:38,491 ^~ 2022-12-04T16:13:38,491 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-04T16:13:38,491 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-04T16:13:38,492 ^~ 2022-12-04T16:13:38,492 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,493 for (i=0; iambig_list->count; i++) { 2022-12-04T16:13:38,493 ^ 2022-12-04T16:13:38,494 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,494 for (i=0; iseq_count; i++) 2022-12-04T16:13:38,494 ^ 2022-12-04T16:13:38,495 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-04T16:13:38,496 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-04T16:13:38,496 for (i=0; iseq_count; i++) { 2022-12-04T16:13:38,496 ^ 2022-12-04T16:13:38,650 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-04T16:13:38,651 !! 2022-12-04T16:13:38,652 ############################ 2022-12-04T16:13:38,652 # Package would be ignored # 2022-12-04T16:13:38,652 ############################ 2022-12-04T16:13:38,653 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-04T16:13:38,653 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:13:38,654 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-04T16:13:38,654 because it may contain data files, but this behavior is likely to change 2022-12-04T16:13:38,654 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:13:38,655 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-04T16:13:38,655 the `packages` configuration field or the proper discovery methods 2022-12-04T16:13:38,656 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:13:38,656 instead of `find_packages(...)`/`find:`). 2022-12-04T16:13:38,656 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:13:38,657 documentation page. 2022-12-04T16:13:38,658 !! 2022-12-04T16:13:38,658 check.warn(importable) 2022-12-04T16:13:38,659 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-04T16:13:38,659 !! 2022-12-04T16:13:38,660 ############################ 2022-12-04T16:13:38,660 # Package would be ignored # 2022-12-04T16:13:38,660 ############################ 2022-12-04T16:13:38,661 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-04T16:13:38,661 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:13:38,662 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-04T16:13:38,662 because it may contain data files, but this behavior is likely to change 2022-12-04T16:13:38,662 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:13:38,663 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-04T16:13:38,663 the `packages` configuration field or the proper discovery methods 2022-12-04T16:13:38,664 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:13:38,664 instead of `find_packages(...)`/`find:`). 2022-12-04T16:13:38,665 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:13:38,665 documentation page. 2022-12-04T16:13:38,666 !! 2022-12-04T16:13:38,666 check.warn(importable) 2022-12-04T16:13:38,667 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-04T16:13:38,667 !! 2022-12-04T16:13:38,668 ############################ 2022-12-04T16:13:38,669 # Package would be ignored # 2022-12-04T16:13:38,669 ############################ 2022-12-04T16:13:38,670 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-04T16:13:38,670 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:13:38,671 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-04T16:13:38,671 because it may contain data files, but this behavior is likely to change 2022-12-04T16:13:38,672 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:13:38,673 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-04T16:13:38,673 the `packages` configuration field or the proper discovery methods 2022-12-04T16:13:38,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:13:38,674 instead of `find_packages(...)`/`find:`). 2022-12-04T16:13:38,675 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:13:38,675 documentation page. 2022-12-04T16:13:38,677 !! 2022-12-04T16:13:38,677 check.warn(importable) 2022-12-04T16:13:38,678 /tmp/pip-build-env-gf3pud24/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-04T16:13:38,678 !! 2022-12-04T16:13:38,679 ############################ 2022-12-04T16:13:38,680 # Package would be ignored # 2022-12-04T16:13:38,680 ############################ 2022-12-04T16:13:38,681 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-04T16:13:38,681 but it is not listed in the `packages` configuration of setuptools. 2022-12-04T16:13:38,682 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-04T16:13:38,682 because it may contain data files, but this behavior is likely to change 2022-12-04T16:13:38,683 in future versions of setuptools (and therefore is considered deprecated). 2022-12-04T16:13:38,684 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-04T16:13:38,684 the `packages` configuration field or the proper discovery methods 2022-12-04T16:13:38,685 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-04T16:13:38,685 instead of `find_packages(...)`/`find:`). 2022-12-04T16:13:38,686 You can read more about "package discovery" and "data files" on setuptools 2022-12-04T16:13:38,686 documentation page. 2022-12-04T16:13:38,687 !! 2022-12-04T16:13:38,688 check.warn(importable) 2022-12-04T16:13:38,689 checking whether can be included... yes 2022-12-04T16:13:38,689 checking whether can be included... yes 2022-12-04T16:13:38,689 checking whether can be included... yes 2022-12-04T16:13:38,690 checking whether can be included... yes 2022-12-04T16:13:38,690 checking whether can be included... yes 2022-12-04T16:13:38,690 checking whether can be included... yes 2022-12-04T16:13:38,691 checking whether can be included... yes 2022-12-04T16:13:38,691 checking whether can be included... yes 2022-12-04T16:13:38,692 checking whether can be included... yes 2022-12-04T16:13:38,692 checking whether can be included... yes 2022-12-04T16:13:38,692 checking whether can be included... yes 2022-12-04T16:13:38,693 checking whether can be included... yes 2022-12-04T16:13:38,693 checking whether can be included... yes 2022-12-04T16:13:38,694 checking whether function 'aligned_alloc' is available... no 2022-12-04T16:13:38,694 checking whether function 'erfc' is available... no 2022-12-04T16:13:38,695 checking whether function 'getpid' is available... yes 2022-12-04T16:13:38,695 checking whether function '_mm_malloc' is available... no 2022-12-04T16:13:38,695 checking whether function 'popen' is available... yes 2022-12-04T16:13:38,696 checking whether function 'posix_memalign' is available... yes 2022-12-04T16:13:38,696 checking whether function 'strcasecmp' is available... yes 2022-12-04T16:13:38,696 checking whether function 'strsep' is available... yes 2022-12-04T16:13:38,697 checking whether function 'sysconf' is available... yes 2022-12-04T16:13:38,697 checking whether function 'sysctl' is available... yes 2022-12-04T16:13:38,698 checking whether function 'times' is available... yes 2022-12-04T16:13:38,698 checking whether function 'fseeko' is available... yes 2022-12-04T16:13:38,698 checking whether can be included... yes 2022-12-04T16:13:38,699 checking whether can be included... yes 2022-12-04T16:13:38,699 checking whether can be included... yes 2022-12-04T16:13:38,700 checking whether can be included... yes 2022-12-04T16:13:38,700 checking whether can be included... yes 2022-12-04T16:13:38,701 checking whether can be included... yes 2022-12-04T16:13:38,701 checking whether can be included... yes 2022-12-04T16:13:38,702 checking whether can be included... yes 2022-12-04T16:13:38,702 checking whether function 'mkstemp' is available... yes 2022-12-04T16:13:38,702 checking whether function 'popen' is available... yes 2022-12-04T16:13:38,703 checking whether function 'putenv' is available... yes 2022-12-04T16:13:38,704 checking whether function 'strcasecmp' is available... yes 2022-12-04T16:13:38,704 checking whether function 'strsep' is available... yes 2022-12-04T16:13:38,704 checking whether function 'times' is available... yes 2022-12-04T16:13:38,705 checking whether function 'getpid' is available... yes 2022-12-04T16:13:38,705 checking whether function 'sysctl' is available... yes 2022-12-04T16:13:38,706 checking whether function 'sysconf' is available... yes 2022-12-04T16:13:38,706 checking whether function 'getcwd' is available... yes 2022-12-04T16:13:38,707 checking whether function 'chmod' is available... yes 2022-12-04T16:13:38,707 checking whether function 'stat' is available... yes 2022-12-04T16:13:38,708 checking whether function 'fstat' is available... yes 2022-12-04T16:13:38,708 checking whether function 'erfc' is available... no 2022-12-04T16:13:38,708 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-04T16:13:38,931 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-04T16:13:38,981 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpskjrfsu7[/] 2022-12-04T16:13:38,982 [bold magenta]cwd[/]: /tmp/pip-wheel-zafyaa5y/pyhmmer_8c8e917d936449229da1a71d9a604d7a 2022-12-04T16:13:38,982 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-04T16:13:38,987 ERROR: Failed building wheel for pyhmmer 2022-12-04T16:13:38,993 Failed to build pyhmmer 2022-12-04T16:13:38,995 ERROR: Failed to build one or more wheels 2022-12-04T16:13:38,997 Exception information: 2022-12-04T16:13:38,997 Traceback (most recent call last): 2022-12-04T16:13:38,997 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-04T16:13:38,997 status = run_func(*args) 2022-12-04T16:13:38,997 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-04T16:13:38,997 return func(self, options, args) 2022-12-04T16:13:38,997 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-04T16:13:38,997 raise CommandError("Failed to build one or more wheels") 2022-12-04T16:13:38,997 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-04T16:13:39,006 Removed build tracker: '/tmp/pip-build-tracker-m_tf76nu'