2022-12-08T09:51:38,621 Created temporary directory: /tmp/pip-ephem-wheel-cache-ilddhhmo
2022-12-08T09:51:38,623 Created temporary directory: /tmp/pip-build-tracker-bp6t8n9w
2022-12-08T09:51:38,623 Initialized build tracking at /tmp/pip-build-tracker-bp6t8n9w
2022-12-08T09:51:38,623 Created build tracker: /tmp/pip-build-tracker-bp6t8n9w
2022-12-08T09:51:38,623 Entered build tracker: /tmp/pip-build-tracker-bp6t8n9w
2022-12-08T09:51:38,624 Created temporary directory: /tmp/pip-wheel-u9_mnnjb
2022-12-08T09:51:38,627 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-08T09:51:38,630 Created temporary directory: /tmp/pip-ephem-wheel-cache-l1a07x51
2022-12-08T09:51:38,653 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-08T09:51:38,656 2 location(s) to search for versions of moleculekit:
2022-12-08T09:51:38,656 * https://pypi.org/simple/moleculekit/
2022-12-08T09:51:38,656 * https://www.piwheels.org/simple/moleculekit/
2022-12-08T09:51:38,656 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2022-12-08T09:51:38,657 Getting page https://pypi.org/simple/moleculekit/
2022-12-08T09:51:38,658 Found index url https://pypi.org/simple
2022-12-08T09:51:38,711 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2022-12-08T09:51:38,744   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,744   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2022-12-08T09:51:38,745   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,745   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2022-12-08T09:51:38,745   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,746   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2022-12-08T09:51:38,746   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,746   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,747   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2022-12-08T09:51:38,747   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,747   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,748   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,748   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,749   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,749   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2022-12-08T09:51:38,749   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,750   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2022-12-08T09:51:38,750   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,750   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2022-12-08T09:51:38,750   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,751   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2022-12-08T09:51:38,751   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,751   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2022-12-08T09:51:38,751   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,751   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2022-12-08T09:51:38,752   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,752   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2022-12-08T09:51:38,752   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,752   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2022-12-08T09:51:38,753   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,753   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2022-12-08T09:51:38,753   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,753   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2022-12-08T09:51:38,754   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,754   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2022-12-08T09:51:38,754   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,754   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2022-12-08T09:51:38,755   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,755   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2022-12-08T09:51:38,755   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,755   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2022-12-08T09:51:38,755   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,756   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2022-12-08T09:51:38,756   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,756   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2022-12-08T09:51:38,756   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,757   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2022-12-08T09:51:38,757   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,757   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2022-12-08T09:51:38,757   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,758   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2022-12-08T09:51:38,758   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,758   Found link https://files.pythonhosted.org/packages/8a/04/f032c25621eac9ccab21dd25c0cb5d7150a21a5b0cde5ae21adb3e2be933/moleculekit-0.2.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.6
2022-12-08T09:51:38,758   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7b/c3/6023b75cb8d60607d1932a6f3fa1fee5c99e88b692f25e3ed0072a4812a5/moleculekit-0.2.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-08T09:51:38,759   Found link https://files.pythonhosted.org/packages/68/e0/0fe1302790061ea9e59370a988d67b877642c45a9e6d725819118cc3aae1/moleculekit-0.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.8
2022-12-08T09:51:38,759   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/90/90/238209bf8023d0779c0d4a9592786cc94e69d3dde60b5b17473d57c97b60/moleculekit-0.2.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-08T09:51:38,789   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
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2022-12-08T09:51:38,790   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2022-12-08T09:51:38,790   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2022-12-08T09:51:38,790   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2022-12-08T09:51:38,791   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2022-12-08T09:51:38,791   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
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2022-12-08T09:51:38,792   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2022-12-08T09:51:38,792   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2022-12-08T09:51:38,792   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2022-12-08T09:51:38,792   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2022-12-08T09:51:38,793   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2022-12-08T09:51:38,793   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2022-12-08T09:51:38,794   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2022-12-08T09:51:38,794   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2022-12-08T09:51:38,795   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2022-12-08T09:51:38,795   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2022-12-08T09:51:38,796   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2022-12-08T09:51:38,796   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2022-12-08T09:51:38,797 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2022-12-08T09:51:38,797 Getting page https://www.piwheels.org/simple/moleculekit/
2022-12-08T09:51:38,798 Found index url https://www.piwheels.org/simple
2022-12-08T09:51:39,043 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2022-12-08T09:51:39,085   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.1-cp39-cp39-linux_armv7l.whl#sha256=d1155b4bc9b95abfc6141b655eeab895c018b6bc3898d086c1e9aed690b555d7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.1-cp39-cp39-linux_armv6l.whl#sha256=d1155b4bc9b95abfc6141b655eeab895c018b6bc3898d086c1e9aed690b555d7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.0-cp39-cp39-linux_armv7l.whl#sha256=2335de6704a494b118481ac750c91de9befd1a0e12629fd0d7b20ca020ab582f (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.0-cp39-cp39-linux_armv6l.whl#sha256=2335de6704a494b118481ac750c91de9befd1a0e12629fd0d7b20ca020ab582f (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,086   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.9-cp39-cp39-linux_armv7l.whl#sha256=e8ded20037d22ac419d05d0a80db0081999eac7f92084cd85a24aef997eb56cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.9-cp39-cp39-linux_armv6l.whl#sha256=e8ded20037d22ac419d05d0a80db0081999eac7f92084cd85a24aef997eb56cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv7l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.8-cp39-cp39-linux_armv6l.whl#sha256=04b80834389619f511934db60c45649252288c6a8320edfb0b3e7b2bda32ee5b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,087   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.7-cp39-cp39-linux_armv7l.whl#sha256=3dd3a190b8fe8100d9bbf6e197fca336903aebf847bab8d6ac684be12a816989 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.7-cp39-cp39-linux_armv6l.whl#sha256=3dd3a190b8fe8100d9bbf6e197fca336903aebf847bab8d6ac684be12a816989 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv7l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.4.6-cp39-cp39-linux_armv6l.whl#sha256=c81af8eb30e31f41a57d6e31c2e4d4a5a6f85041fe9f79dcd843adf62c919a7a (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-08T09:51:39,088   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp39-cp39-linux_armv7l.whl#sha256=9462e9f87eb4aec5ac63c9df15de09cdce7d94fe44a0708d7ee525e983ff1830 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.14-cp37-cp37m-linux_armv7l.whl#sha256=5bc2de8230ca38d840e6f86860f469828a1720a95c76726db1ecb07a8af6de91 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv7l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp39-cp39-linux_armv6l.whl#sha256=413233b9ea619a276a0cc4911cee59417c2be694ab30c5c5c836a31391e5b6c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,089   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv7l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.13-cp37-cp37m-linux_armv6l.whl#sha256=ef137737db23a1f54c74776c99ac718685db863975d888a3e219900b5874fe45 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv7l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp39-cp39-linux_armv6l.whl#sha256=d75d99aa397ece4f4d163fff8e78e6868ccbab4190016befc567c5f08d1cbbd4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv7l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,090   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.12-cp37-cp37m-linux_armv6l.whl#sha256=a871d3b206f986ddc16b14a1e59904384aea1d6936948be45d6d3d05211637c4 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv7l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp39-cp39-linux_armv6l.whl#sha256=0d0004615c5da8823417816aa8e72f2ac2a2993c01c9ffa07540521dd44cdeb9 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv7l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,091   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv7l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv7l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp37-cp37m-linux_armv6l.whl#sha256=e8d8fc1d3f31a50afae4252a2c403fb5b928eff4452d3954322d0d9b2d5383c5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,092   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,093   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,094   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,094   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,094   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,094   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,094   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,095   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,095   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,095   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,095   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,095   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,096   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,097   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,098   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,098   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,098   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,098   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,098   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,099   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,099   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,099   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,099   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,099   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,100   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,100   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,101   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,103   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,104   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,105   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,106   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,107   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,108   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,109   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.8-py3-none-any.whl#sha256=9f728761688514ebb5e7fbd00f93960d862d928411f697f3beaf5c05b55bcd29 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.7-py3-none-any.whl#sha256=0167204d0c1ad4269753d9981920d6d47d0936fa85f5a709716abe11f2f63924 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.6-py3-none-any.whl#sha256=aa0c660454f157d45a5709a2fe3ec7e6c79af7be1dc5866ab3497475f2197d8d (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,110   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.4-py3-none-any.whl#sha256=328348766e2960fdf270fdf395fcb1b60acc7f8741927b76535453e8f3731f03 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.4.3-py3-none-any.whl#sha256=cd086bf69fafb879119d434964d0fd0920aa414c2b72fd29628920d6b5615e44 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.4-py3-none-any.whl#sha256=a5284594c607376665fb0592efa0f7696a9d1b437641b385a939bb6e171e5b58 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.3-py3-none-any.whl#sha256=c7787bffc57340080dbc84bbc30cf3adbec8c10947b34a038b821fd98f93e138 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.2-py3-none-any.whl#sha256=0f9deb57395d35af8d9e4300bd57eb6fb5537feb62576b4df5611326e007a946 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-08T09:51:39,111   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.3.1-py3-none-any.whl#sha256=b5d47dfce102b3af0001276b5d6fda0f055e2ef4f0076a06286d3b5e4f2361b4 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-08T09:51:39,118 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2022-12-08T09:51:39,118 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2022-12-08T09:51:39,157 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2022-12-08T09:51:39,174 Collecting moleculekit==1.5.2
2022-12-08T09:51:39,176   Created temporary directory: /tmp/pip-unpack-f9_3fzad
2022-12-08T09:51:39,582   Downloading moleculekit-1.5.2.tar.gz (1.7 MB)
2022-12-08T09:51:40,837   Added moleculekit==1.5.2 from https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz to build tracker '/tmp/pip-build-tracker-bp6t8n9w'
2022-12-08T09:51:40,845   Created temporary directory: /tmp/pip-build-env-2n_wwj6v
2022-12-08T09:51:40,852   Installing build dependencies: started
2022-12-08T09:51:40,853   Running command pip subprocess to install build dependencies
2022-12-08T09:51:42,073   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-12-08T09:51:42,488   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-08T09:51:42,513   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-08T09:51:44,180   Collecting setuptools
2022-12-08T09:51:44,295     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB)
2022-12-08T09:51:45,771   Collecting numpy>=1.18.5
2022-12-08T09:51:47,161     Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.5-cp39-cp39-linux_armv7l.whl (12.4 MB)
2022-12-08T09:51:48,868   Collecting Cython>=0.29.21
2022-12-08T09:51:49,432     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-12-08T09:51:49,704   Collecting toml
2022-12-08T09:51:49,720     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2022-12-08T09:51:50,004   Collecting versioneer[toml]==0.26
2022-12-08T09:51:50,075     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.26-py3-none-any.whl (44 kB)
2022-12-08T09:51:50,204   Collecting tomli
2022-12-08T09:51:50,223     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-12-08T09:51:52,620   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2022-12-08T09:51:52,661     Creating /tmp/pip-build-env-2n_wwj6v/overlay/bin
2022-12-08T09:51:52,663     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/versioneer to 755
2022-12-08T09:52:03,933     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/f2py to 755
2022-12-08T09:52:03,936     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/f2py3 to 755
2022-12-08T09:52:03,938     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/f2py3.9 to 755
2022-12-08T09:52:06,877     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/cygdb to 755
2022-12-08T09:52:06,879     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/cython to 755
2022-12-08T09:52:06,881     changing mode of /tmp/pip-build-env-2n_wwj6v/overlay/bin/cythonize to 755
2022-12-08T09:52:06,910   Successfully installed Cython-0.29.32 numpy-1.23.5 setuptools-65.6.3 toml-0.10.2 tomli-2.0.1 versioneer-0.26

2022-12-08T09:52:06,927   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-12-08T09:52:06,927   [notice] To update, run: python3 -m pip install --upgrade pip
2022-12-08T09:52:07,313   Installing build dependencies: finished with status 'done'
2022-12-08T09:52:07,318   Getting requirements to build wheel: started
2022-12-08T09:52:07,319   Running command Getting requirements to build wheel
2022-12-08T09:52:20,134   warning: moleculekit/distance_utils/distance_utils.pyx:261:43: local variable 'g1' referenced before assignment
2022-12-08T09:52:20,135   warning: moleculekit/distance_utils/distance_utils.pyx:261:68: local variable 'g2' referenced before assignment
2022-12-08T09:52:51,156   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,157   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,157   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,157   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,157   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,157   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,158   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,158   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,158   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,158   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2022-12-08T09:52:51,158   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-08T09:52:51,158   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2022-12-08T09:52:51,158   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2022-12-08T09:52:51,158   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2022-12-08T09:52:51,158   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2022-12-08T09:52:51,159   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2022-12-08T09:52:51,159   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2022-12-08T09:52:51,159   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2022-12-08T09:52:51,159   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2022-12-08T09:52:51,159   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2022-12-08T09:52:51,159   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2022-12-08T09:52:51,159   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2022-12-08T09:52:51,241   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-08T09:52:51,242     warnings.warn(msg, _BetaConfiguration)
2022-12-08T09:52:51,394   running egg_info
2022-12-08T09:52:51,401   writing moleculekit.egg-info/PKG-INFO
2022-12-08T09:52:51,404   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-12-08T09:52:51,407   writing requirements to moleculekit.egg-info/requires.txt
2022-12-08T09:52:51,409   writing top-level names to moleculekit.egg-info/top_level.txt
2022-12-08T09:52:51,439   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:52:51,476   reading manifest template 'MANIFEST.in'
2022-12-08T09:52:51,739   no previously-included directories found matching 'moleculekit/test-data'
2022-12-08T09:52:51,740   no previously-included directories found matching 'moleculekit/tests'
2022-12-08T09:52:51,741   no previously-included directories found matching 'package'
2022-12-08T09:52:51,741   adding license file 'LICENSE'
2022-12-08T09:52:51,759   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:52:52,635   Getting requirements to build wheel: finished with status 'done'
2022-12-08T09:52:52,653   Installing backend dependencies: started
2022-12-08T09:52:52,654   Running command pip subprocess to install backend dependencies
2022-12-08T09:52:53,995   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-12-08T09:52:54,426   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-08T09:52:54,455   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-08T09:52:54,901   Collecting wheel
2022-12-08T09:52:54,919     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2022-12-08T09:52:56,924   Installing collected packages: wheel
2022-12-08T09:52:57,069     Creating /tmp/pip-build-env-2n_wwj6v/normal/bin
2022-12-08T09:52:57,071     changing mode of /tmp/pip-build-env-2n_wwj6v/normal/bin/wheel to 755
2022-12-08T09:52:57,084   Successfully installed wheel-0.38.4

2022-12-08T09:52:57,100   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-12-08T09:52:57,100   [notice] To update, run: python3 -m pip install --upgrade pip
2022-12-08T09:52:57,318   Installing backend dependencies: finished with status 'done'
2022-12-08T09:52:57,321   Created temporary directory: /tmp/pip-modern-metadata-vsxrjibg
2022-12-08T09:52:57,324   Preparing metadata (pyproject.toml): started
2022-12-08T09:52:57,325   Running command Preparing metadata (pyproject.toml)
2022-12-08T09:52:59,470   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-08T09:52:59,471     warnings.warn(msg, _BetaConfiguration)
2022-12-08T09:52:59,633   running dist_info
2022-12-08T09:52:59,637   creating /tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info
2022-12-08T09:52:59,642   writing /tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/PKG-INFO
2022-12-08T09:52:59,646   writing dependency_links to /tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/dependency_links.txt
2022-12-08T09:52:59,648   writing requirements to /tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/requires.txt
2022-12-08T09:52:59,649   writing top-level names to /tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/top_level.txt
2022-12-08T09:52:59,651   writing manifest file '/tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:52:59,686   reading manifest file '/tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:52:59,689   reading manifest template 'MANIFEST.in'
2022-12-08T09:52:59,971   no previously-included directories found matching 'moleculekit/test-data'
2022-12-08T09:52:59,972   no previously-included directories found matching 'moleculekit/tests'
2022-12-08T09:52:59,972   no previously-included directories found matching 'package'
2022-12-08T09:52:59,973   adding license file 'LICENSE'
2022-12-08T09:52:59,986   writing manifest file '/tmp/pip-modern-metadata-vsxrjibg/moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:52:59,995   creating '/tmp/pip-modern-metadata-vsxrjibg/moleculekit-1.5.2.dist-info'
2022-12-08T09:53:00,258   Preparing metadata (pyproject.toml): finished with status 'done'
2022-12-08T09:53:00,265   Source in /tmp/pip-wheel-u9_mnnjb/moleculekit_fbebc4fc08c44aa9b1d99af10af9225e has version 1.5.2, which satisfies requirement moleculekit==1.5.2 from https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz
2022-12-08T09:53:00,266   Removed moleculekit==1.5.2 from https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz from build tracker '/tmp/pip-build-tracker-bp6t8n9w'
2022-12-08T09:53:00,273 Created temporary directory: /tmp/pip-unpack-w_pdklht
2022-12-08T09:53:00,274 Building wheels for collected packages: moleculekit
2022-12-08T09:53:00,279   Created temporary directory: /tmp/pip-wheel-umq1adml
2022-12-08T09:53:00,279   Destination directory: /tmp/pip-wheel-umq1adml
2022-12-08T09:53:00,281   Building wheel for moleculekit (pyproject.toml): started
2022-12-08T09:53:00,282   Running command Building wheel for moleculekit (pyproject.toml)
2022-12-08T09:53:02,153   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-08T09:53:02,153     warnings.warn(msg, _BetaConfiguration)
2022-12-08T09:53:02,304   running bdist_wheel
2022-12-08T09:53:02,320   running build
2022-12-08T09:53:02,320   running build_py
2022-12-08T09:53:02,329   creating build
2022-12-08T09:53:02,330   creating build/lib.linux-armv7l-cpython-39
2022-12-08T09:53:02,330   creating build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,332   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,334   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,336   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,362   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,365   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,369   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,372   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,374   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,376   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,378   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,380   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,382   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,384   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,386   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,388   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,390   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,392   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,394   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,399   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:02,402   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,403   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,405   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,409   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,412   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,415   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,417   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-08T09:53:02,420   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-08T09:53:02,422   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-08T09:53:02,427   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-08T09:53:02,431   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-08T09:53:02,434   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-08T09:53:02,435   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-08T09:53:02,438   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-08T09:53:02,440   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-08T09:53:02,442   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-08T09:53:02,446   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,447   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,450   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,453   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,455   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,458   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,462   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,466   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,468   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,471   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,473   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,478   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,481   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,484   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,489   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,492   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-08T09:53:02,495   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-12-08T09:53:02,496   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-12-08T09:53:02,499   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-08T09:53:02,500   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-08T09:53:02,549   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-08T09:53:02,552   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,553   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,556   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,559   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,561   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,564   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,567   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,570   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,573   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,576   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,585   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,587   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,590   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,592   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-08T09:53:02,596   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-08T09:53:02,598   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-08T09:53:02,600   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-08T09:53:02,603   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-08T09:53:02,605   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-08T09:53:02,608   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-08T09:53:02,610   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-08T09:53:02,613   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-08T09:53:02,615   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-08T09:53:02,618   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-08T09:53:02,621   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-08T09:53:02,623   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-08T09:53:02,625   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-08T09:53:02,628   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-08T09:53:02,631   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-08T09:53:02,633   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-08T09:53:02,635   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-08T09:53:02,637   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-08T09:53:02,640   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-08T09:53:02,641   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-08T09:53:02,643   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-08T09:53:02,646   running egg_info
2022-12-08T09:53:02,654   writing moleculekit.egg-info/PKG-INFO
2022-12-08T09:53:02,656   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-12-08T09:53:02,658   writing requirements to moleculekit.egg-info/requires.txt
2022-12-08T09:53:02,660   writing top-level names to moleculekit.egg-info/top_level.txt
2022-12-08T09:53:02,680   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:53:02,689   reading manifest template 'MANIFEST.in'
2022-12-08T09:53:02,967   no previously-included directories found matching 'moleculekit/test-data'
2022-12-08T09:53:02,968   no previously-included directories found matching 'moleculekit/tests'
2022-12-08T09:53:02,969   no previously-included directories found matching 'package'
2022-12-08T09:53:02,969   adding license file 'LICENSE'
2022-12-08T09:53:02,987   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-08T09:53:02,998   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:02,998       !!


2022-12-08T09:53:02,999       ############################
2022-12-08T09:53:02,999       # Package would be ignored #
2022-12-08T09:53:02,999       ############################
2022-12-08T09:53:02,999       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2022-12-08T09:53:02,999       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:02,999       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2022-12-08T09:53:03,000       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,000       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,000       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2022-12-08T09:53:03,000       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,000       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,000       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,001       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,001       documentation page.


2022-12-08T09:53:03,001   !!

2022-12-08T09:53:03,001     check.warn(importable)
2022-12-08T09:53:03,001   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,002       !!


2022-12-08T09:53:03,002       ############################
2022-12-08T09:53:03,002       # Package would be ignored #
2022-12-08T09:53:03,002       ############################
2022-12-08T09:53:03,002       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2022-12-08T09:53:03,002       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,003       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2022-12-08T09:53:03,003       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,003       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,003       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2022-12-08T09:53:03,003       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,003       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,003       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,004       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,004       documentation page.


2022-12-08T09:53:03,004   !!

2022-12-08T09:53:03,004     check.warn(importable)
2022-12-08T09:53:03,004   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,005       !!


2022-12-08T09:53:03,005       ############################
2022-12-08T09:53:03,005       # Package would be ignored #
2022-12-08T09:53:03,005       ############################
2022-12-08T09:53:03,005       Python recognizes 'moleculekit.distance_utils' as an importable package,
2022-12-08T09:53:03,005       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,006       'moleculekit.distance_utils' has been automatically added to the distribution only
2022-12-08T09:53:03,006       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,006       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,006       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2022-12-08T09:53:03,006       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,006       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,006       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,007       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,007       documentation page.


2022-12-08T09:53:03,007   !!

2022-12-08T09:53:03,007     check.warn(importable)
2022-12-08T09:53:03,007   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,007       !!


2022-12-08T09:53:03,008       ############################
2022-12-08T09:53:03,008       # Package would be ignored #
2022-12-08T09:53:03,008       ############################
2022-12-08T09:53:03,008       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2022-12-08T09:53:03,008       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,008       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2022-12-08T09:53:03,009       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,009       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,009       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2022-12-08T09:53:03,009       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,009       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,009       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,010       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,010       documentation page.


2022-12-08T09:53:03,010   !!

2022-12-08T09:53:03,010     check.warn(importable)
2022-12-08T09:53:03,010   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,010       !!


2022-12-08T09:53:03,011       ############################
2022-12-08T09:53:03,011       # Package would be ignored #
2022-12-08T09:53:03,011       ############################
2022-12-08T09:53:03,011       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2022-12-08T09:53:03,011       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,011       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2022-12-08T09:53:03,012       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,012       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,012       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2022-12-08T09:53:03,012       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,012       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,012       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,012       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,013       documentation page.


2022-12-08T09:53:03,013   !!

2022-12-08T09:53:03,013     check.warn(importable)
2022-12-08T09:53:03,013   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,013       !!


2022-12-08T09:53:03,014       ############################
2022-12-08T09:53:03,014       # Package would be ignored #
2022-12-08T09:53:03,014       ############################
2022-12-08T09:53:03,014       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2022-12-08T09:53:03,014       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,014       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2022-12-08T09:53:03,014       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,015       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,015       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2022-12-08T09:53:03,015       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,015       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,015       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,015       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,015       documentation page.


2022-12-08T09:53:03,016   !!

2022-12-08T09:53:03,016     check.warn(importable)
2022-12-08T09:53:03,016   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,016       !!


2022-12-08T09:53:03,017       ############################
2022-12-08T09:53:03,017       # Package would be ignored #
2022-12-08T09:53:03,017       ############################
2022-12-08T09:53:03,017       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2022-12-08T09:53:03,017       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,017       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2022-12-08T09:53:03,017       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,017       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,018       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2022-12-08T09:53:03,018       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,018       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,018       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,018       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,018       documentation page.


2022-12-08T09:53:03,019   !!

2022-12-08T09:53:03,019     check.warn(importable)
2022-12-08T09:53:03,019   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,019       !!


2022-12-08T09:53:03,019       ############################
2022-12-08T09:53:03,020       # Package would be ignored #
2022-12-08T09:53:03,020       ############################
2022-12-08T09:53:03,020       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2022-12-08T09:53:03,020       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,020       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2022-12-08T09:53:03,020       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,020       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,021       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2022-12-08T09:53:03,021       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,021       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,021       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,021       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,021       documentation page.


2022-12-08T09:53:03,022   !!

2022-12-08T09:53:03,022     check.warn(importable)
2022-12-08T09:53:03,022   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,022       !!


2022-12-08T09:53:03,023       ############################
2022-12-08T09:53:03,023       # Package would be ignored #
2022-12-08T09:53:03,023       ############################
2022-12-08T09:53:03,023       Python recognizes 'moleculekit.share' as an importable package,
2022-12-08T09:53:03,023       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,023       'moleculekit.share' has been automatically added to the distribution only
2022-12-08T09:53:03,023       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,023       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,024       Please make sure that 'moleculekit.share' is included as a package by using
2022-12-08T09:53:03,024       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,024       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,024       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,024       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,024       documentation page.


2022-12-08T09:53:03,025   !!

2022-12-08T09:53:03,025     check.warn(importable)
2022-12-08T09:53:03,025   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.atomselect' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,025       !!


2022-12-08T09:53:03,025       ############################
2022-12-08T09:53:03,026       # Package would be ignored #
2022-12-08T09:53:03,026       ############################
2022-12-08T09:53:03,026       Python recognizes 'moleculekit.share.atomselect' as an importable package,
2022-12-08T09:53:03,026       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,026       'moleculekit.share.atomselect' has been automatically added to the distribution only
2022-12-08T09:53:03,026       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,026       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,026       Please make sure that 'moleculekit.share.atomselect' is included as a package by using
2022-12-08T09:53:03,027       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,027       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,027       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,027       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,027       documentation page.


2022-12-08T09:53:03,027   !!

2022-12-08T09:53:03,028     check.warn(importable)
2022-12-08T09:53:03,028   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.pdb2pqr.residues' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,028       !!


2022-12-08T09:53:03,028       ############################
2022-12-08T09:53:03,028       # Package would be ignored #
2022-12-08T09:53:03,028       ############################
2022-12-08T09:53:03,029       Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package,
2022-12-08T09:53:03,029       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,029       'moleculekit.share.pdb2pqr.residues' has been automatically added to the distribution only
2022-12-08T09:53:03,029       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,029       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,029       Please make sure that 'moleculekit.share.pdb2pqr.residues' is included as a package by using
2022-12-08T09:53:03,030       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,030       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,030       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,030       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,030       documentation page.


2022-12-08T09:53:03,030   !!

2022-12-08T09:53:03,031     check.warn(importable)
2022-12-08T09:53:03,031   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,031       !!


2022-12-08T09:53:03,031       ############################
2022-12-08T09:53:03,031       # Package would be ignored #
2022-12-08T09:53:03,031       ############################
2022-12-08T09:53:03,031       Python recognizes 'moleculekit.tmalign' as an importable package,
2022-12-08T09:53:03,032       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,032       'moleculekit.tmalign' has been automatically added to the distribution only
2022-12-08T09:53:03,032       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,032       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,032       Please make sure that 'moleculekit.tmalign' is included as a package by using
2022-12-08T09:53:03,032       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,032       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,033       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,033       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,033       documentation page.


2022-12-08T09:53:03,033   !!

2022-12-08T09:53:03,033     check.warn(importable)
2022-12-08T09:53:03,034   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,034       !!


2022-12-08T09:53:03,034       ############################
2022-12-08T09:53:03,034       # Package would be ignored #
2022-12-08T09:53:03,034       ############################
2022-12-08T09:53:03,034       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2022-12-08T09:53:03,034       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,035       'moleculekit.tmalign.include' has been automatically added to the distribution only
2022-12-08T09:53:03,035       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,035       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,035       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2022-12-08T09:53:03,035       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,035       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,035       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,036       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,036       documentation page.


2022-12-08T09:53:03,036   !!

2022-12-08T09:53:03,036     check.warn(importable)
2022-12-08T09:53:03,036   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,037       !!


2022-12-08T09:53:03,037       ############################
2022-12-08T09:53:03,037       # Package would be ignored #
2022-12-08T09:53:03,037       ############################
2022-12-08T09:53:03,037       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2022-12-08T09:53:03,037       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,038       'moleculekit.tmalign.src' has been automatically added to the distribution only
2022-12-08T09:53:03,038       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,038       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,038       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2022-12-08T09:53:03,038       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,038       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,039       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,039       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,039       documentation page.


2022-12-08T09:53:03,040   !!

2022-12-08T09:53:03,040     check.warn(importable)
2022-12-08T09:53:03,040   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,040       !!


2022-12-08T09:53:03,041       ############################
2022-12-08T09:53:03,041       # Package would be ignored #
2022-12-08T09:53:03,041       ############################
2022-12-08T09:53:03,041       Python recognizes 'moleculekit.wrapping' as an importable package,
2022-12-08T09:53:03,041       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,042       'moleculekit.wrapping' has been automatically added to the distribution only
2022-12-08T09:53:03,042       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,042       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,042       Please make sure that 'moleculekit.wrapping' is included as a package by using
2022-12-08T09:53:03,043       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,043       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,043       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,043       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,043       documentation page.


2022-12-08T09:53:03,044   !!

2022-12-08T09:53:03,044     check.warn(importable)
2022-12-08T09:53:03,044   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,044       !!


2022-12-08T09:53:03,045       ############################
2022-12-08T09:53:03,045       # Package would be ignored #
2022-12-08T09:53:03,045       ############################
2022-12-08T09:53:03,045       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2022-12-08T09:53:03,046       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,046       'moleculekit.xtc_utils' has been automatically added to the distribution only
2022-12-08T09:53:03,046       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,046       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,046       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2022-12-08T09:53:03,046       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,046       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,047       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,047       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,047       documentation page.


2022-12-08T09:53:03,047   !!

2022-12-08T09:53:03,048     check.warn(importable)
2022-12-08T09:53:03,048   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,048       !!


2022-12-08T09:53:03,048       ############################
2022-12-08T09:53:03,048       # Package would be ignored #
2022-12-08T09:53:03,048       ############################
2022-12-08T09:53:03,048       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2022-12-08T09:53:03,049       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,049       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2022-12-08T09:53:03,049       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,049       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,049       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2022-12-08T09:53:03,049       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,050       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,050       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,050       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,050       documentation page.


2022-12-08T09:53:03,050   !!

2022-12-08T09:53:03,051     check.warn(importable)
2022-12-08T09:53:03,051   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2022-12-08T09:53:03,051       !!


2022-12-08T09:53:03,051       ############################
2022-12-08T09:53:03,051       # Package would be ignored #
2022-12-08T09:53:03,051       ############################
2022-12-08T09:53:03,052       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2022-12-08T09:53:03,052       but it is not listed in the `packages` configuration of setuptools.

2022-12-08T09:53:03,053       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2022-12-08T09:53:03,053       because it may contain data files, but this behavior is likely to change
2022-12-08T09:53:03,054       in future versions of setuptools (and therefore is considered deprecated).

2022-12-08T09:53:03,054       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2022-12-08T09:53:03,055       the `packages` configuration field or the proper discovery methods
2022-12-08T09:53:03,055       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-08T09:53:03,056       instead of `find_packages(...)`/`find:`).

2022-12-08T09:53:03,057       You can read more about "package discovery" and "data files" on setuptools
2022-12-08T09:53:03,057       documentation page.


2022-12-08T09:53:03,058   !!

2022-12-08T09:53:03,059     check.warn(importable)
2022-12-08T09:53:03,059   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:03,059   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:03,060   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-08T09:53:03,060   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-08T09:53:03,082   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-08T09:53:03,086   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-08T09:53:03,087   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-08T09:53:03,118   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-08T09:53:03,121   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-08T09:53:03,122   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-08T09:53:03,145   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-08T09:53:03,148   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-08T09:53:03,149   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-08T09:53:03,170   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-08T09:53:03,173   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-08T09:53:03,173   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-08T09:53:03,176   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-08T09:53:03,179   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-12-08T09:53:03,179   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-12-08T09:53:03,182   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2022-12-08T09:53:03,182   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,184   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,186   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,188   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,190   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,192   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,194   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,196   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,199   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,201   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,204   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,206   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,208   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,210   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,213   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,215   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,217   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,220   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,222   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,225   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,227   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,229   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,232   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,234   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,236   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,238   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,240   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,242   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,245   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,247   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,249   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,251   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,253   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,255   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,257   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,259   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,262   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,264   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,266   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,268   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,270   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,272   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,274   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,276   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,279   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,281   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,283   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,286   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,288   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,291   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,293   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,296   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,298   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,300   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,303   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,305   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,308   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,310   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,312   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,314   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,317   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,319   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,321   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,323   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,325   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,328   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,330   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,332   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,335   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,337   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,339   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,342   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,344   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,346   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,348   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,351   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,353   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,355   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,357   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,360   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,362   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,364   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,366   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,369   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,371   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,374   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,376   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,378   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,381   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,383   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,385   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,387   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,390   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,392   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,395   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,397   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,400   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,402   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,404   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,406   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,409   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,411   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,414   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,416   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,418   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,420   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,423   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,425   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,427   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,429   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,431   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,434   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,436   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,438   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,440   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,442   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,445   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,447   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,450   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,452   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,454   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,456   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,459   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,461   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,463   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,465   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,467   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,470   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,472   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,474   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,477   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,479   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,481   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,483   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,485   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,487   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,490   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,492   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,494   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,496   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,498   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,501   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,503   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,505   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,507   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,509   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,512   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,514   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,516   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,519   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,522   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,525   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,528   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,531   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,534   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,537   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,541   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,544   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,547   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,550   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,554   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,557   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,560   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,563   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,566   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,569   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,572   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,575   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,578   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,581   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,584   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,587   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,591   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,594   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,597   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,600   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-08T09:53:03,603   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-08T09:53:03,604   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-08T09:53:03,631   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-08T09:53:03,633   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-08T09:53:03,635   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-12-08T09:53:03,644   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-12-08T09:53:03,647   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-08T09:53:03,648   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-08T09:53:03,655   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-08T09:53:03,656   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-08T09:53:03,677   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-08T09:53:03,679   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-08T09:53:03,680   copying moleculekit/xtc_utils/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-08T09:53:03,702   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-08T09:53:03,705   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-08T09:53:03,707   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-08T09:53:03,708   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-08T09:53:03,711   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-08T09:53:03,713   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-08T09:53:03,716   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-08T09:53:03,717   copying moleculekit/xtc_utils/src/xdrfile.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-08T09:53:03,721   copying moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-08T09:53:03,724   copying moleculekit/xtc_utils/src/xtc.c -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-08T09:53:03,727   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-08T09:53:03,728   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-08T09:53:03,750   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-08T09:53:03,753   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-08T09:53:03,804   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-08T09:53:03,828   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-08T09:53:03,830   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-08T09:53:03,831   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-08T09:53:03,856   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-08T09:53:03,859   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-08T09:53:03,860   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-08T09:53:03,883   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-08T09:53:03,897   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-12-08T09:53:03,897   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.2'
2022-12-08T09:53:03,897   running build_ext
2022-12-08T09:53:03,909   building 'moleculekit.interactions.hbonds' extension
2022-12-08T09:53:03,910   creating build/temp.linux-armv7l-cpython-39
2022-12-08T09:53:03,911   creating build/temp.linux-armv7l-cpython-39/moleculekit
2022-12-08T09:53:03,912   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-08T09:53:03,912   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-08T09:53:03,914   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2022-12-08T09:53:04,443   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:53:04,443                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:53:04,443                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:53:04,444                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2022-12-08T09:53:04,444   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:53:04,444      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:53:04,444         |  ^~~~~~~
2022-12-08T09:53:23,621   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:53:23,963   building 'moleculekit.interactions.pipi' extension
2022-12-08T09:53:23,964   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-08T09:53:23,981   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2022-12-08T09:53:24,241   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:53:24,241                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:53:24,241                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:53:24,241                    from moleculekit/interactions/pipi/pipi.cpp:786:
2022-12-08T09:53:24,241   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:53:24,242      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:53:24,242         |  ^~~~~~~
2022-12-08T09:53:45,509   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:53:45,856   building 'moleculekit.interactions.cationpi' extension
2022-12-08T09:53:45,857   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-08T09:53:45,858   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2022-12-08T09:53:46,128   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:53:46,129                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:53:46,129                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:53:46,129                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2022-12-08T09:53:46,129   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:53:46,129      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:53:46,129         |  ^~~~~~~
2022-12-08T09:54:07,255   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:54:07,600   building 'moleculekit.interactions.sigmahole' extension
2022-12-08T09:54:07,601   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-08T09:54:07,601   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2022-12-08T09:54:07,883   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:54:07,883                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:54:07,883                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:54:07,883                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2022-12-08T09:54:07,884   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:54:07,884      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:54:07,884         |  ^~~~~~~
2022-12-08T09:54:28,720   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:54:29,067   building 'moleculekit.wrapping' extension
2022-12-08T09:54:29,067   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-08T09:54:29,069   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2022-12-08T09:54:29,343   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:54:29,344                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:54:29,344                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:54:29,344                    from moleculekit/wrapping/wrapping.cpp:786:
2022-12-08T09:54:29,344   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:54:29,344      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:54:29,344         |  ^~~~~~~
2022-12-08T09:54:46,918   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:54:47,143   building 'moleculekit.bondguesser_utils' extension
2022-12-08T09:54:47,143   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-08T09:54:47,144   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2022-12-08T09:54:47,413   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:54:47,413                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:54:47,413                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:54:47,413                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2022-12-08T09:54:47,413   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:54:47,414      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:54:47,414         |  ^~~~~~~
2022-12-08T09:54:48,611   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2022-12-08T09:54:48,612   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-08T09:54:48,612    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2022-12-08T09:54:48,612         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-12-08T09:54:48,612   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-08T09:54:48,612    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-12-08T09:54:48,612         |                         ~~~~~~~~~~^~~~~~~~~~~
2022-12-08T09:54:48,613   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-08T09:54:48,613    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2022-12-08T09:54:48,613         |                           ~~~~~~~~~~^~~~~~~~~~~
2022-12-08T09:54:48,613   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,613    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,613         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,614    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-08T09:54:48,614         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,614    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,614         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,614   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,615    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,615         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,615   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,615    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-08T09:54:48,615         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,615   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,615    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,616         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,616   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,616    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,616         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,616   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,616    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-08T09:54:48,616         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,617   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,617    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,617         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,617   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,617    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,617         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,618   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,618    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,618         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,618   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,618    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,618         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,618   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,619    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,619         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,619   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,619    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-08T09:54:48,619         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,619   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,620    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,620         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,620   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,620    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-08T09:54:48,620         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,620   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,620    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,621         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,621   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,621    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-08T09:54:48,621         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,621   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,621    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,622         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,622   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-08T09:54:48,622    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-08T09:54:48,622         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,648   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2022-12-08T09:54:48,648   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-08T09:54:48,649    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2022-12-08T09:54:48,649         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2022-12-08T09:54:48,649   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-08T09:54:48,649    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2022-12-08T09:54:48,649         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-12-08T09:55:05,353   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:55:05,683   building 'moleculekit.atomselect_utils' extension
2022-12-08T09:55:05,684   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-08T09:55:05,685   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2022-12-08T09:55:05,977   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:55:05,977                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:55:05,977                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:55:05,977                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2022-12-08T09:55:05,977   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:55:05,978      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:55:05,978         |  ^~~~~~~
2022-12-08T09:55:07,328   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2022-12-08T09:55:07,328   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-08T09:55:07,328    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2022-12-08T09:55:07,329         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-12-08T09:55:07,334   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-12-08T09:55:07,334   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-08T09:55:07,334    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-12-08T09:55:07,335         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-08T09:55:07,340   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-12-08T09:55:07,340   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-08T09:55:07,340    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-12-08T09:55:07,340         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-08T09:55:30,378   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:55:30,740   building 'moleculekit.distance_utils' extension
2022-12-08T09:55:30,741   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-08T09:55:30,755   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2022-12-08T09:55:31,098   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:55:31,098                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:55:31,098                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:55:31,098                    from moleculekit/distance_utils/distance_utils.cpp:786:
2022-12-08T09:55:31,099   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:55:31,099      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:55:31,099         |  ^~~~~~~
2022-12-08T09:55:50,452   moleculekit/distance_utils/distance_utils.cpp: In function ‘PyObject* __pyx_pw_11moleculekit_14distance_utils_5dist_trajectory_reduction_pairs(PyObject*, PyObject*, PyObject*)’:
2022-12-08T09:55:50,453   moleculekit/distance_utils/distance_utils.cpp:5017:143: warning: ‘__pyx_v_g1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-12-08T09:55:50,453    5017 |       __pyx_v_diff_chain = ((*((__pyx_t_11moleculekit_14distance_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_digitized_chains1.data + __pyx_t_13 * __pyx_v_digitized_chains1.strides[0]) ))) != (*((__pyx_t_11moleculekit_14distance_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_digitized_chains2.data + __pyx_t_14 * __pyx_v_digitized_chains2.strides[0]) ))));
2022-12-08T09:55:50,453         |                                                                                                                                    ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:55:50,453   moleculekit/distance_utils/distance_utils.cpp:4736:7: note: ‘__pyx_v_g1’ was declared here
2022-12-08T09:55:50,453    4736 |   int __pyx_v_g1;
2022-12-08T09:55:50,453         |       ^~~~~~~~~~
2022-12-08T09:55:50,454   moleculekit/distance_utils/distance_utils.cpp:5017:304: warning: ‘__pyx_v_g2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-12-08T09:55:50,454    5017 |       __pyx_v_diff_chain = ((*((__pyx_t_11moleculekit_14distance_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_digitized_chains1.data + __pyx_t_13 * __pyx_v_digitized_chains1.strides[0]) ))) != (*((__pyx_t_11moleculekit_14distance_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_digitized_chains2.data + __pyx_t_14 * __pyx_v_digitized_chains2.strides[0]) ))));
2022-12-08T09:55:50,454         |                                                                                                                                                                                                                                                                                                     ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:55:50,454   moleculekit/distance_utils/distance_utils.cpp:4737:7: note: ‘__pyx_v_g2’ was declared here
2022-12-08T09:55:50,454    4737 |   int __pyx_v_g2;
2022-12-08T09:55:50,454         |       ^~~~~~~~~~
2022-12-08T09:55:53,563   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:55:53,908   building 'moleculekit.occupancy_utils' extension
2022-12-08T09:55:53,909   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-08T09:55:53,910   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2022-12-08T09:55:54,169   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:55:54,170                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:55:54,170                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:55:54,170                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2022-12-08T09:55:54,170   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:55:54,170      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:55:54,170         |  ^~~~~~~
2022-12-08T09:56:10,889   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:56:11,110   building 'moleculekit.xtc' extension
2022-12-08T09:56:11,111   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-08T09:56:11,112   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-08T09:56:11,113   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-12-08T09:56:11,271   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_float’:
2022-12-08T09:56:11,271   moleculekit/xtc_utils/src/xdrfile.c:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-12-08T09:56:11,272     763 |  int errval=1;
2022-12-08T09:56:11,272         |      ^~~~~~
2022-12-08T09:56:11,272   moleculekit/xtc_utils/src/xdrfile.c:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,272     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-12-08T09:56:11,272         |                         ^~~~~~
2022-12-08T09:56:11,273   moleculekit/xtc_utils/src/xdrfile.c:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,273     756 |  int smallidx,  minidx, maxidx;
2022-12-08T09:56:11,273         |                 ^~~~~~
2022-12-08T09:56:11,280   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_float’:
2022-12-08T09:56:11,281   moleculekit/xtc_utils/src/xdrfile.c:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,281    1001 |  int errval;
2022-12-08T09:56:11,282         |      ^~~~~~
2022-12-08T09:56:11,286   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_decompress_coord_double’:
2022-12-08T09:56:11,287   moleculekit/xtc_utils/src/xdrfile.c:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-12-08T09:56:11,287    1297 |  int errval=1;
2022-12-08T09:56:11,287         |      ^~~~~~
2022-12-08T09:56:11,288   moleculekit/xtc_utils/src/xdrfile.c:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,288    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-12-08T09:56:11,288         |                         ^~~~~~
2022-12-08T09:56:11,289   moleculekit/xtc_utils/src/xdrfile.c:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,290    1289 |  int smallidx,  maxidx, minidx;
2022-12-08T09:56:11,290         |                         ^~~~~~
2022-12-08T09:56:11,299   moleculekit/xtc_utils/src/xdrfile.c: In function ‘xdrfile_compress_coord_double’:
2022-12-08T09:56:11,300   moleculekit/xtc_utils/src/xdrfile.c:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-12-08T09:56:11,300    1504 |  int errval=1;
2022-12-08T09:56:11,300         |      ^~~~~~
2022-12-08T09:56:13,534   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-12-08T09:56:13,766   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-12-08T09:56:13,891   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_new’:
2022-12-08T09:56:13,891   moleculekit/xtc_utils/src/xtc.c:201:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-12-08T09:56:13,892     201 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2022-12-08T09:56:13,892         |      ^~~
2022-12-08T09:56:13,895   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_write’:
2022-12-08T09:56:13,896   moleculekit/xtc_utils/src/xtc.c:416:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-12-08T09:56:13,896     416 |  int nf3 = nframes * 3;
2022-12-08T09:56:13,896         |      ^~~
2022-12-08T09:56:13,899   moleculekit/xtc_utils/src/xtc.c: In function ‘xtc_read_frame’:
2022-12-08T09:56:13,900   moleculekit/xtc_utils/src/xtc.c:495:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2022-12-08T09:56:13,900     495 |  int writing_index = 0;
2022-12-08T09:56:13,901         |      ^~~~~~~~~~~~~
2022-12-08T09:56:13,901   moleculekit/xtc_utils/src/xtc.c:494:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2022-12-08T09:56:13,901     494 |  int reading_index = 0;
2022-12-08T09:56:13,901         |      ^~~~~~~~~~~~~
2022-12-08T09:56:14,284   moleculekit/xtc_utils/src/xtc.c:539:12: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-12-08T09:56:14,284     539 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2022-12-08T09:56:14,284         |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-12-08T09:56:14,435   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.c -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -Wno-unused-function -Wno-unreachable-code -Wno-sign-compare
2022-12-08T09:56:14,781   In file included from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948,
2022-12-08T09:56:14,781                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-08T09:56:14,782                    from /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-08T09:56:14,782                    from moleculekit/xtc_utils/xtc.c:778:
2022-12-08T09:56:14,782   /tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-08T09:56:14,782      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-08T09:56:14,782         |  ^~~~~~~
2022-12-08T09:56:28,728   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:56:28,899   building 'moleculekit.tmalign' extension
2022-12-08T09:56:28,900   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-08T09:56:28,900   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-08T09:56:28,902   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2022-12-08T09:56:58,449   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-2n_wwj6v/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2022-12-08T09:57:10,764   In file included from /usr/include/c++/10/vector:72,
2022-12-08T09:57:10,764                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-12-08T09:57:10,764   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-12-08T09:57:10,764   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-12-08T09:57:10,765     426 |       vector<_Tp, _Alloc>::
2022-12-08T09:57:10,765         |       ^~~~~~~~~~~~~~~~~~~
2022-12-08T09:57:11,065   In file included from /usr/include/c++/10/vector:67,
2022-12-08T09:57:11,065                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-12-08T09:57:11,065   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2022-12-08T09:57:11,066   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-12-08T09:57:11,066    1198 |    _M_realloc_insert(end(), __x);
2022-12-08T09:57:11,066         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-08T09:57:11,066   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-12-08T09:57:11,066    1198 |    _M_realloc_insert(end(), __x);
2022-12-08T09:57:11,066         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-08T09:57:12,910   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2022-12-08T09:57:13,394   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-12-08T09:57:13,395   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.2'
2022-12-08T09:57:13,395   installing to build/bdist.linux-armv7l/wheel
2022-12-08T09:57:13,395   running install
2022-12-08T09:57:13,421   running install_lib
2022-12-08T09:57:13,428   creating build/bdist.linux-armv7l
2022-12-08T09:57:13,428   creating build/bdist.linux-armv7l/wheel
2022-12-08T09:57:13,431   creating build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,433   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-08T09:57:13,435   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-08T09:57:13,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-08T09:57:13,461   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,503   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,530   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,566   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,569   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,571   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,574   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,581   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,584   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-08T09:57:13,585   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-08T09:57:13,587   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-08T09:57:13,589   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-08T09:57:13,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-08T09:57:13,594   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,595   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-08T09:57:13,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,600   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,635   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-08T09:57:13,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-08T09:57:13,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-08T09:57:13,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-08T09:57:13,648   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-08T09:57:13,649   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-08T09:57:13,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-08T09:57:13,653   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-08T09:57:13,655   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-08T09:57:13,658   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,679   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,684   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-08T09:57:13,685   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-08T09:57:13,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-08T09:57:13,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,717   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,740   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,742   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,746   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,750   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,754   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-08T09:57:13,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,777   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-12-08T09:57:13,778   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-08T09:57:13,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-08T09:57:13,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-08T09:57:13,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-08T09:57:13,787   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-08T09:57:13,790   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-08T09:57:13,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-08T09:57:13,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-08T09:57:13,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-08T09:57:13,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-08T09:57:13,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-12-08T09:57:13,802   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-08T09:57:13,803   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-08T09:57:13,805   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-08T09:57:13,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:13,810   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-08T09:57:13,812   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-12-08T09:57:13,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-12-08T09:57:13,815   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2022-12-08T09:57:13,820   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:13,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2022-12-08T09:57:14,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,033   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,036   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,045   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,061   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,065   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,067   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,078   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,084   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,090   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,094   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,096   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,098   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,101   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,107   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,109   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,111   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,113   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,115   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,117   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,119   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,121   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,123   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,125   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,127   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,133   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,137   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,158   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-08T09:57:14,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-08T09:57:14,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-08T09:57:14,173   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,207   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-08T09:57:14,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-08T09:57:14,230   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-08T09:57:14,233   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,261   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,264   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-08T09:57:14,265   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-08T09:57:14,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-08T09:57:14,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,322   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-08T09:57:14,323   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-08T09:57:14,325   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-08T09:57:14,349   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-08T09:57:14,350   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-08T09:57:14,373   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-08T09:57:14,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-08T09:57:14,404   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,407   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-08T09:57:14,407   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-08T09:57:14,410   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-08T09:57:14,431   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,493   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,496   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,497   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,524   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-08T09:57:14,525   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-08T09:57:14,557   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-12-08T09:57:14,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-12-08T09:57:14,560   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-08T09:57:14,562   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-08T09:57:14,565   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-12-08T09:57:14,586   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-12-08T09:57:14,592   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,596   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,599   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,606   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,609   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,612   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,614   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,618   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,620   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,622   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,624   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,627   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-08T09:57:14,630   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-08T09:57:14,631   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-08T09:57:14,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-08T09:57:14,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,659   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,663   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-08T09:57:14,664   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-08T09:57:14,687   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-08T09:57:14,689   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,692   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-08T09:57:14,693   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-08T09:57:14,694   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-08T09:57:14,697   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-08T09:57:14,699   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-08T09:57:14,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-08T09:57:14,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-08T09:57:14,706   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-08T09:57:14,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-08T09:57:14,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-08T09:57:14,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-08T09:57:14,717   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.c -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-08T09:57:14,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,742   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-08T09:57:14,743   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-08T09:57:14,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-08T09:57:14,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-08T09:57:14,775   running install_egg_info
2022-12-08T09:57:14,782   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.5.2-py3.9.egg-info
2022-12-08T09:57:14,797   running install_scripts
2022-12-08T09:57:14,853   creating build/bdist.linux-armv7l/wheel/moleculekit-1.5.2.dist-info/WHEEL
2022-12-08T09:57:14,856   creating '/tmp/pip-wheel-umq1adml/.tmp-yf5cyl4m/moleculekit-1.5.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-08T09:57:14,860   adding 'moleculekit/__init__.py'
2022-12-08T09:57:14,861   adding 'moleculekit/_version.py'
2022-12-08T09:57:14,863   adding 'moleculekit/align.py'
2022-12-08T09:57:15,160   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:15,172   adding 'moleculekit/bondguesser.py'
2022-12-08T09:57:15,388   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:15,396   adding 'moleculekit/config.py'
2022-12-08T09:57:15,397   adding 'moleculekit/dihedral.py'
2022-12-08T09:57:15,665   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:15,676   adding 'moleculekit/home.py'
2022-12-08T09:57:15,677   adding 'moleculekit/logging.ini'
2022-12-08T09:57:15,690   adding 'moleculekit/molecule.py'
2022-12-08T09:57:15,892   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:15,900   adding 'moleculekit/periodictable.py'
2022-12-08T09:57:15,901   adding 'moleculekit/pymolgraphics.py'
2022-12-08T09:57:15,903   adding 'moleculekit/rcsb.py'
2022-12-08T09:57:15,904   adding 'moleculekit/rdkitintegration.py'
2022-12-08T09:57:15,916   adding 'moleculekit/readers.py'
2022-12-08T09:57:16,483   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:16,506   adding 'moleculekit/util.py'
2022-12-08T09:57:16,507   adding 'moleculekit/version.py'
2022-12-08T09:57:16,509   adding 'moleculekit/viewer.py'
2022-12-08T09:57:16,510   adding 'moleculekit/vmd_wrapper'
2022-12-08T09:57:16,512   adding 'moleculekit/vmdgraphics.py'
2022-12-08T09:57:16,514   adding 'moleculekit/vmdviewer.py'
2022-12-08T09:57:16,721   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:16,733   adding 'moleculekit/writers.py'
2022-12-08T09:57:16,953   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:16,962   adding 'moleculekit/atomselect/__init__.py'
2022-12-08T09:57:16,963   adding 'moleculekit/atomselect/analyze.py'
2022-12-08T09:57:16,966   adding 'moleculekit/atomselect/atomselect.py'
2022-12-08T09:57:16,968   adding 'moleculekit/atomselect/languageparser.py'
2022-12-08T09:57:17,053   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2022-12-08T09:57:17,063   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2022-12-08T09:57:17,135   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2022-12-08T09:57:17,143   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2022-12-08T09:57:17,219   adding 'moleculekit/distance_utils/distance_utils.cpp'
2022-12-08T09:57:17,227   adding 'moleculekit/distance_utils/distance_utils.pyx'
2022-12-08T09:57:17,229   adding 'moleculekit/interactions/__init__.py'
2022-12-08T09:57:17,482   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:17,721   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:17,731   adding 'moleculekit/interactions/interactions.py'
2022-12-08T09:57:17,982   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:18,241   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2022-12-08T09:57:18,323   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2022-12-08T09:57:18,330   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2022-12-08T09:57:18,402   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2022-12-08T09:57:18,410   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2022-12-08T09:57:18,483   adding 'moleculekit/interactions/pipi/pipi.cpp'
2022-12-08T09:57:18,491   adding 'moleculekit/interactions/pipi/pipi.pyx'
2022-12-08T09:57:18,564   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2022-12-08T09:57:18,571   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2022-12-08T09:57:18,640   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2022-12-08T09:57:18,647   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2022-12-08T09:57:18,661   adding 'moleculekit/pdbx/__init__.py'
2022-12-08T09:57:18,665   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2022-12-08T09:57:18,668   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2022-12-08T09:57:18,671   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2022-12-08T09:57:18,672   adding 'moleculekit/pdbx/reader/__init__.py'
2022-12-08T09:57:18,674   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2022-12-08T09:57:18,676   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2022-12-08T09:57:18,677   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2022-12-08T09:57:18,678   adding 'moleculekit/pdbx/tests/__init__.py'
2022-12-08T09:57:18,681   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2022-12-08T09:57:18,682   adding 'moleculekit/pdbx/writer/__init__.py'
2022-12-08T09:57:18,684   adding 'moleculekit/ply/__init__.py'
2022-12-08T09:57:18,688   adding 'moleculekit/ply/lex.py'
2022-12-08T09:57:18,700   adding 'moleculekit/ply/yacc.py'
2022-12-08T09:57:18,703   adding 'moleculekit/projections/__init__.py'
2022-12-08T09:57:18,705   adding 'moleculekit/projections/metriccoordinate.py'
2022-12-08T09:57:18,708   adding 'moleculekit/projections/metricdihedral.py'
2022-12-08T09:57:18,713   adding 'moleculekit/projections/metricdistance.py'
2022-12-08T09:57:18,715   adding 'moleculekit/projections/metricfluctuation.py'
2022-12-08T09:57:18,717   adding 'moleculekit/projections/metricgyration.py'
2022-12-08T09:57:18,721   adding 'moleculekit/projections/metricplumed2.py'
2022-12-08T09:57:18,723   adding 'moleculekit/projections/metricrmsd.py'
2022-12-08T09:57:18,725   adding 'moleculekit/projections/metricsasa.py'
2022-12-08T09:57:18,727   adding 'moleculekit/projections/metricsecondarystructure.py'
2022-12-08T09:57:18,729   adding 'moleculekit/projections/metricshell.py'
2022-12-08T09:57:18,731   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2022-12-08T09:57:18,732   adding 'moleculekit/projections/metrictmscore.py'
2022-12-08T09:57:18,734   adding 'moleculekit/projections/projection.py'
2022-12-08T09:57:18,735   adding 'moleculekit/projections/util.py'
2022-12-08T09:57:18,738   adding 'moleculekit/share/ALA.cif'
2022-12-08T09:57:18,739   adding 'moleculekit/share/backbone.cif'
2022-12-08T09:57:18,741   adding 'moleculekit/share/atomselect/atomselect.json'
2022-12-08T09:57:18,747   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2022-12-08T09:57:18,748   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2022-12-08T09:57:18,749   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2022-12-08T09:57:18,751   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2022-12-08T09:57:18,752   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2022-12-08T09:57:18,753   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2022-12-08T09:57:18,754   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2022-12-08T09:57:18,756   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2022-12-08T09:57:18,757   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2022-12-08T09:57:18,758   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2022-12-08T09:57:18,760   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2022-12-08T09:57:18,761   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2022-12-08T09:57:18,762   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2022-12-08T09:57:18,764   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2022-12-08T09:57:18,765   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2022-12-08T09:57:18,766   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2022-12-08T09:57:18,768   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2022-12-08T09:57:18,769   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2022-12-08T09:57:18,770   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2022-12-08T09:57:18,771   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2022-12-08T09:57:18,773   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2022-12-08T09:57:18,774   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2022-12-08T09:57:18,775   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2022-12-08T09:57:18,777   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2022-12-08T09:57:18,778   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2022-12-08T09:57:18,779   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2022-12-08T09:57:18,781   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2022-12-08T09:57:18,782   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2022-12-08T09:57:18,783   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2022-12-08T09:57:18,784   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2022-12-08T09:57:18,786   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2022-12-08T09:57:18,787   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2022-12-08T09:57:18,788   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2022-12-08T09:57:18,789   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2022-12-08T09:57:18,791   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2022-12-08T09:57:18,792   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2022-12-08T09:57:18,793   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2022-12-08T09:57:18,795   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2022-12-08T09:57:18,796   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2022-12-08T09:57:18,797   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2022-12-08T09:57:18,799   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2022-12-08T09:57:18,800   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2022-12-08T09:57:18,801   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2022-12-08T09:57:18,803   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2022-12-08T09:57:18,804   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2022-12-08T09:57:18,805   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2022-12-08T09:57:18,807   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2022-12-08T09:57:18,808   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2022-12-08T09:57:18,809   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2022-12-08T09:57:18,811   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2022-12-08T09:57:18,812   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2022-12-08T09:57:18,813   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2022-12-08T09:57:18,815   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2022-12-08T09:57:18,816   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2022-12-08T09:57:18,817   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2022-12-08T09:57:18,818   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2022-12-08T09:57:18,820   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2022-12-08T09:57:18,821   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2022-12-08T09:57:18,822   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2022-12-08T09:57:18,824   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2022-12-08T09:57:18,825   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2022-12-08T09:57:18,826   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2022-12-08T09:57:18,828   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2022-12-08T09:57:18,829   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2022-12-08T09:57:18,831   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2022-12-08T09:57:18,832   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2022-12-08T09:57:18,833   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2022-12-08T09:57:18,834   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2022-12-08T09:57:18,836   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2022-12-08T09:57:18,837   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2022-12-08T09:57:18,838   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2022-12-08T09:57:18,840   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2022-12-08T09:57:18,841   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2022-12-08T09:57:18,842   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2022-12-08T09:57:18,843   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2022-12-08T09:57:18,845   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2022-12-08T09:57:18,846   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2022-12-08T09:57:18,847   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2022-12-08T09:57:18,849   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2022-12-08T09:57:18,850   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2022-12-08T09:57:18,851   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2022-12-08T09:57:18,853   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2022-12-08T09:57:18,854   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2022-12-08T09:57:18,855   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2022-12-08T09:57:18,857   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2022-12-08T09:57:18,858   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2022-12-08T09:57:18,859   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2022-12-08T09:57:18,861   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2022-12-08T09:57:18,862   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2022-12-08T09:57:18,863   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2022-12-08T09:57:18,865   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2022-12-08T09:57:18,866   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2022-12-08T09:57:18,867   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2022-12-08T09:57:18,869   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2022-12-08T09:57:18,870   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2022-12-08T09:57:18,871   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2022-12-08T09:57:18,873   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2022-12-08T09:57:18,874   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2022-12-08T09:57:18,875   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2022-12-08T09:57:18,876   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2022-12-08T09:57:18,878   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2022-12-08T09:57:18,879   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2022-12-08T09:57:18,881   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2022-12-08T09:57:18,882   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2022-12-08T09:57:18,883   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2022-12-08T09:57:18,885   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2022-12-08T09:57:18,886   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2022-12-08T09:57:18,887   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2022-12-08T09:57:18,889   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2022-12-08T09:57:18,890   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2022-12-08T09:57:18,891   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2022-12-08T09:57:18,893   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2022-12-08T09:57:18,894   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2022-12-08T09:57:18,895   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2022-12-08T09:57:18,897   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2022-12-08T09:57:18,898   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2022-12-08T09:57:18,899   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2022-12-08T09:57:18,901   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2022-12-08T09:57:18,902   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2022-12-08T09:57:18,903   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2022-12-08T09:57:18,905   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2022-12-08T09:57:18,906   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2022-12-08T09:57:18,907   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2022-12-08T09:57:18,909   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2022-12-08T09:57:18,910   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2022-12-08T09:57:18,911   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2022-12-08T09:57:18,913   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2022-12-08T09:57:18,914   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2022-12-08T09:57:18,915   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2022-12-08T09:57:18,917   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2022-12-08T09:57:18,918   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2022-12-08T09:57:18,919   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2022-12-08T09:57:18,920   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2022-12-08T09:57:18,922   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2022-12-08T09:57:18,923   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2022-12-08T09:57:18,924   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2022-12-08T09:57:18,926   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2022-12-08T09:57:18,927   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2022-12-08T09:57:18,928   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2022-12-08T09:57:18,930   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2022-12-08T09:57:18,931   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2022-12-08T09:57:18,932   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2022-12-08T09:57:18,934   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2022-12-08T09:57:18,935   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2022-12-08T09:57:18,936   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2022-12-08T09:57:18,937   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2022-12-08T09:57:18,939   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2022-12-08T09:57:18,940   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2022-12-08T09:57:18,941   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2022-12-08T09:57:18,943   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2022-12-08T09:57:18,944   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2022-12-08T09:57:18,945   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2022-12-08T09:57:18,946   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2022-12-08T09:57:18,948   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2022-12-08T09:57:18,949   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2022-12-08T09:57:18,951   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2022-12-08T09:57:18,952   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2022-12-08T09:57:18,953   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2022-12-08T09:57:18,955   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2022-12-08T09:57:18,956   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2022-12-08T09:57:18,957   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2022-12-08T09:57:18,959   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2022-12-08T09:57:18,960   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2022-12-08T09:57:18,961   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2022-12-08T09:57:18,962   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2022-12-08T09:57:18,964   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2022-12-08T09:57:18,965   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2022-12-08T09:57:18,966   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2022-12-08T09:57:18,968   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2022-12-08T09:57:18,969   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2022-12-08T09:57:18,970   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2022-12-08T09:57:18,971   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2022-12-08T09:57:18,973   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2022-12-08T09:57:18,974   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2022-12-08T09:57:18,975   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2022-12-08T09:57:18,977   adding 'moleculekit/smallmol/__init__.py'
2022-12-08T09:57:18,982   adding 'moleculekit/smallmol/smallmol.py'
2022-12-08T09:57:18,985   adding 'moleculekit/smallmol/smallmollib.py'
2022-12-08T09:57:18,987   adding 'moleculekit/smallmol/test_smallmol.py'
2022-12-08T09:57:18,989   adding 'moleculekit/smallmol/test_smallmollib.py'
2022-12-08T09:57:18,991   adding 'moleculekit/smallmol/util.py'
2022-12-08T09:57:18,993   adding 'moleculekit/smallmol/tools/__init__.py'
2022-12-08T09:57:18,995   adding 'moleculekit/smallmol/tools/clustering.py'
2022-12-08T09:57:18,996   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2022-12-08T09:57:18,998   adding 'moleculekit/smallmol/tools/test_tools.py'
2022-12-08T09:57:19,068   adding 'moleculekit/tmalign/tmalign_util.cpp'
2022-12-08T09:57:19,075   adding 'moleculekit/tmalign/tmalign_util.pyx'
2022-12-08T09:57:19,077   adding 'moleculekit/tmalign/tmalignlib.pxd'
2022-12-08T09:57:19,079   adding 'moleculekit/tmalign/include/TMAlign.h'
2022-12-08T09:57:19,096   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2022-12-08T09:57:19,100   adding 'moleculekit/tools/__init__.py'
2022-12-08T09:57:19,102   adding 'moleculekit/tools/atomtyper.py'
2022-12-08T09:57:19,104   adding 'moleculekit/tools/autosegment.py'
2022-12-08T09:57:19,106   adding 'moleculekit/tools/crystalpacking.py'
2022-12-08T09:57:19,109   adding 'moleculekit/tools/detect.py'
2022-12-08T09:57:19,111   adding 'moleculekit/tools/docking.py'
2022-12-08T09:57:19,113   adding 'moleculekit/tools/graphalignment.py'
2022-12-08T09:57:19,114   adding 'moleculekit/tools/hhblitsprofile.py'
2022-12-08T09:57:19,116   adding 'moleculekit/tools/moleculechecks.py'
2022-12-08T09:57:19,122   adding 'moleculekit/tools/preparation.py'
2022-12-08T09:57:19,125   adding 'moleculekit/tools/preparation_customres.py'
2022-12-08T09:57:19,127   adding 'moleculekit/tools/sequencestructuralalignment.py'
2022-12-08T09:57:19,130   adding 'moleculekit/tools/voxeldescriptors.py'
2022-12-08T09:57:19,132   adding 'moleculekit/tools/obabel_tools/__init__.py'
2022-12-08T09:57:19,133   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2022-12-08T09:57:19,203   adding 'moleculekit/wrapping/wrapping.cpp'
2022-12-08T09:57:19,210   adding 'moleculekit/wrapping/wrapping.pyx'
2022-12-08T09:57:19,281   adding 'moleculekit/xtc_utils/xtc.c'
2022-12-08T09:57:19,288   adding 'moleculekit/xtc_utils/xtc.pyx'
2022-12-08T09:57:19,290   adding 'moleculekit/xtc_utils/xtclib.pxd'
2022-12-08T09:57:19,293   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2022-12-08T09:57:19,294   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2022-12-08T09:57:19,296   adding 'moleculekit/xtc_utils/include/xtc.h'
2022-12-08T09:57:19,303   adding 'moleculekit/xtc_utils/src/xdrfile.c'
2022-12-08T09:57:19,305   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.c'
2022-12-08T09:57:19,307   adding 'moleculekit/xtc_utils/src/xtc.c'
2022-12-08T09:57:19,310   adding 'moleculekit-1.5.2.dist-info/LICENSE'
2022-12-08T09:57:19,311   adding 'moleculekit-1.5.2.dist-info/METADATA'
2022-12-08T09:57:19,312   adding 'moleculekit-1.5.2.dist-info/WHEEL'
2022-12-08T09:57:19,313   adding 'moleculekit-1.5.2.dist-info/top_level.txt'
2022-12-08T09:57:19,318   adding 'moleculekit-1.5.2.dist-info/RECORD'
2022-12-08T09:57:19,433   removing build/bdist.linux-armv7l/wheel
2022-12-08T09:57:19,771   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2022-12-08T09:57:19,956   Created wheel for moleculekit: filename=moleculekit-1.5.2-cp39-cp39-linux_armv7l.whl size=7316634 sha256=8b358f2e4238d3d23612200b0ffd6a1ab6df72929d6e06022996ee2b0bc7c3cd
2022-12-08T09:57:19,957   Stored in directory: /tmp/pip-ephem-wheel-cache-l1a07x51/wheels/7c/b2/84/aafb8d06eab03d900033d1ba5a16fe50249b7a85e94955188e
2022-12-08T09:57:19,983 Successfully built moleculekit
2022-12-08T09:57:20,207 Removed build tracker: '/tmp/pip-build-tracker-bp6t8n9w'