2022-12-09T19:36:19,151 Created temporary directory: /tmp/pip-ephem-wheel-cache-ricuq6if 2022-12-09T19:36:19,154 Created temporary directory: /tmp/pip-build-tracker-il_rpb7j 2022-12-09T19:36:19,154 Initialized build tracking at /tmp/pip-build-tracker-il_rpb7j 2022-12-09T19:36:19,154 Created build tracker: /tmp/pip-build-tracker-il_rpb7j 2022-12-09T19:36:19,154 Entered build tracker: /tmp/pip-build-tracker-il_rpb7j 2022-12-09T19:36:19,155 Created temporary directory: /tmp/pip-wheel-obg_ek9c 2022-12-09T19:36:19,158 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-09T19:36:19,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-5_a7jb85 2022-12-09T19:36:19,188 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-09T19:36:19,191 2 location(s) to search for versions of biom-format: 2022-12-09T19:36:19,191 * https://pypi.org/simple/biom-format/ 2022-12-09T19:36:19,191 * https://www.piwheels.org/simple/biom-format/ 2022-12-09T19:36:19,191 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2022-12-09T19:36:19,192 Getting page https://pypi.org/simple/biom-format/ 2022-12-09T19:36:19,193 Found index url https://pypi.org/simple 2022-12-09T19:36:19,258 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2022-12-09T19:36:19,262 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2022-12-09T19:36:19,263 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2022-12-09T19:36:19,263 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2022-12-09T19:36:19,263 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2022-12-09T19:36:19,264 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2022-12-09T19:36:19,264 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2022-12-09T19:36:19,264 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2022-12-09T19:36:19,264 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2022-12-09T19:36:19,265 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2022-12-09T19:36:19,265 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2022-12-09T19:36:19,265 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2022-12-09T19:36:19,266 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2022-12-09T19:36:19,266 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2022-12-09T19:36:19,266 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2022-12-09T19:36:19,266 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2022-12-09T19:36:19,267 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2022-12-09T19:36:19,267 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2022-12-09T19:36:19,267 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2022-12-09T19:36:19,268 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2022-12-09T19:36:19,268 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2022-12-09T19:36:19,269 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2022-12-09T19:36:19,269 Getting page https://www.piwheels.org/simple/biom-format/ 2022-12-09T19:36:19,270 Found index url https://www.piwheels.org/simple 2022-12-09T19:36:23,098 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2022-12-09T19:36:23,149 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv7l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,149 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv6l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,150 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp39-cp39-linux_armv7l.whl#sha256=28c6a62b9565f15dad3e58c960d180ab30f76bbf4bc1dfb23b38d7fdbae87af5 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,150 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp39-cp39-linux_armv6l.whl#sha256=28c6a62b9565f15dad3e58c960d180ab30f76bbf4bc1dfb23b38d7fdbae87af5 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,150 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp37-cp37m-linux_armv7l.whl#sha256=6f97ac7d6466366ba986e37645c2ac76da461d9badac0e14bc14275e0cd237d2 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,151 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.12-cp37-cp37m-linux_armv6l.whl#sha256=6f97ac7d6466366ba986e37645c2ac76da461d9badac0e14bc14275e0cd237d2 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2022-12-09T19:36:23,151 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.10-cp39-cp39-linux_armv7l.whl#sha256=ec083291f2a79d90ac56f5e0e2f1e1987a92b14e18bda3d453258dd367782381 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,152 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.10-cp39-cp39-linux_armv6l.whl#sha256=ec083291f2a79d90ac56f5e0e2f1e1987a92b14e18bda3d453258dd367782381 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,152 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.10-cp37-cp37m-linux_armv7l.whl#sha256=9f492cca8f3aa0a9501335ca910c72752f6b3673282f337cae3d0c8f96293f58 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,152 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-2.1.9-cp37-cp37m-linux_armv6l.whl#sha256=705f44a568a2b7cf92d5f3cc971e321a7b5027c85a0e02ee8a517d2fe884c326 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,155 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.9-cp35-cp35m-linux_armv7l.whl#sha256=66ca1b047c2e3dab892ba81928ae97c05454d0f81eddce0919e967034df4e3f1 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,155 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.9-cp35-cp35m-linux_armv6l.whl#sha256=66ca1b047c2e3dab892ba81928ae97c05454d0f81eddce0919e967034df4e3f1 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,156 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-2.1.5-cp37-cp37m-linux_armv6l.whl#sha256=53ddaf3c5a8f9ee5f76d8b3f37971c11fb6a6019c029a8e92082fc6fa7f8ba31 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,162 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.5-cp34-cp34m-linux_armv7l.whl#sha256=897af4d0623be22b40c53c60c0234e3d5023014a3d600991da42f8f3447a82c8 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,162 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.5-cp34-cp34m-linux_armv6l.whl#sha256=897af4d0623be22b40c53c60c0234e3d5023014a3d600991da42f8f3447a82c8 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,162 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-1.3.0-py3-none-any.whl#sha256=ee9d81bea91a7c7da55697863c1b003aca4d14b7f7416fcb8c22e169e54aabe6 (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,181 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2022-12-09T19:36:23,182 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2022-12-09T19:36:23,182 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2022-12-09T19:36:23,219 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2022-12-09T19:36:23,236 Collecting biom-format==2.1.13 2022-12-09T19:36:23,238 Created temporary directory: /tmp/pip-unpack-s7fg0hco 2022-12-09T19:36:23,290 Downloading biom-format-2.1.13.tar.gz (11.7 MB) 2022-12-09T19:36:26,440 Added biom-format==2.1.13 from https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz to build tracker '/tmp/pip-build-tracker-il_rpb7j' 2022-12-09T19:36:26,445 Created temporary directory: /tmp/pip-build-env-6imyo8vl 2022-12-09T19:36:26,452 Installing build dependencies: started 2022-12-09T19:36:26,453 Running command pip subprocess to install build dependencies 2022-12-09T19:36:27,650 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-09T19:36:28,032 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-09T19:36:28,057 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-09T19:36:34,740 Collecting setuptools 2022-12-09T19:36:36,927 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-09T19:36:37,190 Collecting wheel 2022-12-09T19:36:39,941 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-09T19:36:41,351 Collecting numpy 2022-12-09T19:36:42,503 Using cached https://www.piwheels.org/simple/numpy/numpy-1.23.5-cp39-cp39-linux_armv7l.whl (12.4 MB) 2022-12-09T19:36:44,160 Collecting cython 2022-12-09T19:36:44,624 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-12-09T19:36:46,673 Installing collected packages: wheel, setuptools, numpy, cython 2022-12-09T19:36:46,822 Creating /tmp/pip-build-env-6imyo8vl/overlay/bin 2022-12-09T19:36:46,824 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/wheel to 755 2022-12-09T19:36:57,847 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/f2py to 755 2022-12-09T19:36:57,850 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/f2py3 to 755 2022-12-09T19:36:57,852 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/f2py3.9 to 755 2022-12-09T19:37:00,778 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/cygdb to 755 2022-12-09T19:37:00,780 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/cython to 755 2022-12-09T19:37:00,783 changing mode of /tmp/pip-build-env-6imyo8vl/overlay/bin/cythonize to 755 2022-12-09T19:37:00,809 Successfully installed cython-0.29.32 numpy-1.23.5 setuptools-65.6.3 wheel-0.38.4 2022-12-09T19:37:00,824 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-09T19:37:00,824 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-09T19:37:01,207 Installing build dependencies: finished with status 'done' 2022-12-09T19:37:01,219 Getting requirements to build wheel: started 2022-12-09T19:37:01,220 Running command Getting requirements to build wheel 2022-12-09T19:37:03,249 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-obg_ek9c/biom-format_1a3c8aab508e4722956e51297bb31d05/biom/_filter.pyx 2022-12-09T19:37:03,249 tree = Parsing.p_module(s, pxd, full_module_name) 2022-12-09T19:37:04,171 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-obg_ek9c/biom-format_1a3c8aab508e4722956e51297bb31d05/biom/_subsample.pyx 2022-12-09T19:37:04,171 tree = Parsing.p_module(s, pxd, full_module_name) 2022-12-09T19:37:04,910 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-obg_ek9c/biom-format_1a3c8aab508e4722956e51297bb31d05/biom/_transform.pyx 2022-12-09T19:37:04,911 tree = Parsing.p_module(s, pxd, full_module_name) 2022-12-09T19:37:05,519 Compiling biom/_filter.pyx because it changed. 2022-12-09T19:37:05,520 Compiling biom/_transform.pyx because it changed. 2022-12-09T19:37:05,520 Compiling biom/_subsample.pyx because it changed. 2022-12-09T19:37:05,520 [1/3] Cythonizing biom/_filter.pyx 2022-12-09T19:37:05,520 [2/3] Cythonizing biom/_subsample.pyx 2022-12-09T19:37:05,520 [3/3] Cythonizing biom/_transform.pyx 2022-12-09T19:37:05,660 running egg_info 2022-12-09T19:37:05,668 writing biom_format.egg-info/PKG-INFO 2022-12-09T19:37:05,670 writing dependency_links to biom_format.egg-info/dependency_links.txt 2022-12-09T19:37:05,672 writing entry points to biom_format.egg-info/entry_points.txt 2022-12-09T19:37:05,674 writing requirements to biom_format.egg-info/requires.txt 2022-12-09T19:37:05,675 writing top-level names to biom_format.egg-info/top_level.txt 2022-12-09T19:37:05,709 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:05,741 reading manifest template 'MANIFEST.in' 2022-12-09T19:37:05,754 warning: no directories found matching 'support_files' 2022-12-09T19:37:05,763 warning: no directories found matching 'tests/test_data' 2022-12-09T19:37:05,764 no previously-included directories found matching 'docs/_build' 2022-12-09T19:37:05,766 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-12-09T19:37:05,767 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2022-12-09T19:37:05,768 warning: no previously-included files matching '.git' found anywhere in distribution 2022-12-09T19:37:05,771 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-12-09T19:37:05,772 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2022-12-09T19:37:05,772 adding license file 'COPYING.txt' 2022-12-09T19:37:05,785 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:06,116 Getting requirements to build wheel: finished with status 'done' 2022-12-09T19:37:06,127 Created temporary directory: /tmp/pip-modern-metadata-5i2mesgg 2022-12-09T19:37:06,130 Preparing metadata (pyproject.toml): started 2022-12-09T19:37:06,131 Running command Preparing metadata (pyproject.toml) 2022-12-09T19:37:08,028 running dist_info 2022-12-09T19:37:08,052 creating /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info 2022-12-09T19:37:08,058 writing /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/PKG-INFO 2022-12-09T19:37:08,060 writing dependency_links to /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/dependency_links.txt 2022-12-09T19:37:08,062 writing entry points to /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/entry_points.txt 2022-12-09T19:37:08,064 writing requirements to /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/requires.txt 2022-12-09T19:37:08,065 writing top-level names to /tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/top_level.txt 2022-12-09T19:37:08,066 writing manifest file '/tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:08,098 reading manifest file '/tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:08,101 reading manifest template 'MANIFEST.in' 2022-12-09T19:37:08,111 warning: no directories found matching 'support_files' 2022-12-09T19:37:08,117 warning: no directories found matching 'tests/test_data' 2022-12-09T19:37:08,118 no previously-included directories found matching 'docs/_build' 2022-12-09T19:37:08,119 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-12-09T19:37:08,120 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2022-12-09T19:37:08,121 warning: no previously-included files matching '.git' found anywhere in distribution 2022-12-09T19:37:08,123 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-12-09T19:37:08,124 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2022-12-09T19:37:08,124 adding license file 'COPYING.txt' 2022-12-09T19:37:08,133 writing manifest file '/tmp/pip-modern-metadata-5i2mesgg/biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:08,135 creating '/tmp/pip-modern-metadata-5i2mesgg/biom_format-2.1.13.dist-info' 2022-12-09T19:37:08,416 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-09T19:37:08,423 Source in /tmp/pip-wheel-obg_ek9c/biom-format_1a3c8aab508e4722956e51297bb31d05 has version 2.1.13, which satisfies requirement biom-format==2.1.13 from https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz 2022-12-09T19:37:08,424 Removed biom-format==2.1.13 from https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz from build tracker '/tmp/pip-build-tracker-il_rpb7j' 2022-12-09T19:37:08,430 Created temporary directory: /tmp/pip-unpack-onxkuy3c 2022-12-09T19:37:08,431 Building wheels for collected packages: biom-format 2022-12-09T19:37:08,436 Created temporary directory: /tmp/pip-wheel-un9r2of1 2022-12-09T19:37:08,436 Destination directory: /tmp/pip-wheel-un9r2of1 2022-12-09T19:37:08,438 Building wheel for biom-format (pyproject.toml): started 2022-12-09T19:37:08,439 Running command Building wheel for biom-format (pyproject.toml) 2022-12-09T19:37:10,318 running bdist_wheel 2022-12-09T19:37:10,344 running build 2022-12-09T19:37:10,344 running build_py 2022-12-09T19:37:10,354 creating build 2022-12-09T19:37:10,354 creating build/lib.linux-armv7l-cpython-39 2022-12-09T19:37:10,355 creating build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,356 copying biom/util.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,359 copying biom/parse.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,362 copying biom/err.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,364 copying biom/table.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,371 copying biom/exception.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,373 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,377 creating build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,378 copying biom/tests/test_err.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,380 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,383 copying biom/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,384 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,388 copying biom/tests/test_util.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,391 copying biom/tests/test_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2022-12-09T19:37:10,398 creating build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,399 copying biom/cli/util.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,401 copying biom/cli/table_head.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,403 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,405 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,406 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,409 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,412 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,414 copying biom/cli/metadata_exporter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,417 copying biom/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,419 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,421 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,424 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,426 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2022-12-09T19:37:10,429 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:10,429 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:10,432 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,433 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,436 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,437 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,439 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,442 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,444 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,447 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,449 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,451 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2022-12-09T19:37:10,453 running egg_info 2022-12-09T19:37:10,476 writing biom_format.egg-info/PKG-INFO 2022-12-09T19:37:10,478 writing dependency_links to biom_format.egg-info/dependency_links.txt 2022-12-09T19:37:10,479 writing entry points to biom_format.egg-info/entry_points.txt 2022-12-09T19:37:10,480 writing requirements to biom_format.egg-info/requires.txt 2022-12-09T19:37:10,482 writing top-level names to biom_format.egg-info/top_level.txt 2022-12-09T19:37:10,494 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:10,501 reading manifest template 'MANIFEST.in' 2022-12-09T19:37:10,511 warning: no directories found matching 'support_files' 2022-12-09T19:37:10,516 warning: no directories found matching 'tests/test_data' 2022-12-09T19:37:10,517 no previously-included directories found matching 'docs/_build' 2022-12-09T19:37:10,519 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-12-09T19:37:10,520 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2022-12-09T19:37:10,522 warning: no previously-included files matching '.git' found anywhere in distribution 2022-12-09T19:37:10,524 warning: no previously-included files matching '*.so' found anywhere in distribution 2022-12-09T19:37:10,526 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2022-12-09T19:37:10,526 adding license file 'COPYING.txt' 2022-12-09T19:37:10,538 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2022-12-09T19:37:10,541 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. 2022-12-09T19:37:10,542 !! 2022-12-09T19:37:10,542 ############################ 2022-12-09T19:37:10,542 # Package would be ignored # 2022-12-09T19:37:10,542 ############################ 2022-12-09T19:37:10,542 Python recognizes 'biom.assets' as an importable package, 2022-12-09T19:37:10,542 but it is not listed in the `packages` configuration of setuptools. 2022-12-09T19:37:10,543 'biom.assets' has been automatically added to the distribution only 2022-12-09T19:37:10,543 because it may contain data files, but this behavior is likely to change 2022-12-09T19:37:10,543 in future versions of setuptools (and therefore is considered deprecated). 2022-12-09T19:37:10,543 Please make sure that 'biom.assets' is included as a package by using 2022-12-09T19:37:10,543 the `packages` configuration field or the proper discovery methods 2022-12-09T19:37:10,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-09T19:37:10,543 instead of `find_packages(...)`/`find:`). 2022-12-09T19:37:10,544 You can read more about "package discovery" and "data files" on setuptools 2022-12-09T19:37:10,544 documentation page. 2022-12-09T19:37:10,544 !! 2022-12-09T19:37:10,544 check.warn(importable) 2022-12-09T19:37:10,545 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. 2022-12-09T19:37:10,545 !! 2022-12-09T19:37:10,545 ############################ 2022-12-09T19:37:10,545 # Package would be ignored # 2022-12-09T19:37:10,545 ############################ 2022-12-09T19:37:10,545 Python recognizes 'biom.tests.bench_tables' as an importable package, 2022-12-09T19:37:10,545 but it is not listed in the `packages` configuration of setuptools. 2022-12-09T19:37:10,546 'biom.tests.bench_tables' has been automatically added to the distribution only 2022-12-09T19:37:10,546 because it may contain data files, but this behavior is likely to change 2022-12-09T19:37:10,546 in future versions of setuptools (and therefore is considered deprecated). 2022-12-09T19:37:10,546 Please make sure that 'biom.tests.bench_tables' is included as a package by using 2022-12-09T19:37:10,546 the `packages` configuration field or the proper discovery methods 2022-12-09T19:37:10,546 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-09T19:37:10,546 instead of `find_packages(...)`/`find:`). 2022-12-09T19:37:10,547 You can read more about "package discovery" and "data files" on setuptools 2022-12-09T19:37:10,547 documentation page. 2022-12-09T19:37:10,547 !! 2022-12-09T19:37:10,547 check.warn(importable) 2022-12-09T19:37:10,549 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. 2022-12-09T19:37:10,549 !! 2022-12-09T19:37:10,550 ############################ 2022-12-09T19:37:10,550 # Package would be ignored # 2022-12-09T19:37:10,550 ############################ 2022-12-09T19:37:10,550 Python recognizes 'biom.tests.test_cli.test_data' as an importable package, 2022-12-09T19:37:10,550 but it is not listed in the `packages` configuration of setuptools. 2022-12-09T19:37:10,550 'biom.tests.test_cli.test_data' has been automatically added to the distribution only 2022-12-09T19:37:10,550 because it may contain data files, but this behavior is likely to change 2022-12-09T19:37:10,551 in future versions of setuptools (and therefore is considered deprecated). 2022-12-09T19:37:10,551 Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using 2022-12-09T19:37:10,551 the `packages` configuration field or the proper discovery methods 2022-12-09T19:37:10,551 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-09T19:37:10,551 instead of `find_packages(...)`/`find:`). 2022-12-09T19:37:10,551 You can read more about "package discovery" and "data files" on setuptools 2022-12-09T19:37:10,551 documentation page. 2022-12-09T19:37:10,552 !! 2022-12-09T19:37:10,552 check.warn(importable) 2022-12-09T19:37:10,561 copying biom/_filter.pyx -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,563 copying biom/_subsample.pyx -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,566 copying biom/_transform.pyx -> build/lib.linux-armv7l-cpython-39/biom 2022-12-09T19:37:10,568 creating build/lib.linux-armv7l-cpython-39/biom/assets 2022-12-09T19:37:10,569 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-cpython-39/biom/assets 2022-12-09T19:37:10,571 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-cpython-39/biom/assets 2022-12-09T19:37:10,573 creating build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:10,574 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:10,582 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:10,608 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:10,659 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:10,678 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,129 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,234 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,238 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,249 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,259 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,272 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,329 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,372 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,376 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,386 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,390 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,399 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,407 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,418 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,421 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,431 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,435 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,444 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,448 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,458 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,463 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,474 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,484 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,498 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,558 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,612 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,615 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,619 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,623 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,627 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,635 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,641 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,643 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,647 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,650 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,654 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,658 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,663 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,665 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,669 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,671 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,675 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,678 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,682 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,686 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,695 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,699 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,709 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,717 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,731 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,733 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,737 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,740 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,744 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,747 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,752 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,754 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,758 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,760 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,764 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,766 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,770 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,772 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,775 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,777 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,781 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,783 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,786 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,789 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,798 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,802 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,811 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,815 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,826 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,828 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,832 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,835 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,839 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,842 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,846 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,848 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,852 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,854 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,857 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,859 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,863 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,865 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,868 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,871 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,874 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,876 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2022-12-09T19:37:11,880 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,882 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,884 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,887 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,889 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,893 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,895 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2022-12-09T19:37:11,897 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2022-12-09T19:37:11,899 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2022-12-09T19:37:11,901 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2022-12-09T19:37:11,903 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2022-12-09T19:37:11,907 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2022-12-09T19:37:11,913 running build_ext 2022-12-09T19:37:11,918 building 'biom._filter' extension 2022-12-09T19:37:11,919 creating build/temp.linux-armv7l-cpython-39 2022-12-09T19:37:11,919 creating build/temp.linux-armv7l-cpython-39/biom 2022-12-09T19:37:11,920 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-39/biom/_filter.o 2022-12-09T19:37:12,280 In file included from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2022-12-09T19:37:12,280 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-12-09T19:37:12,280 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-12-09T19:37:12,281 from biom/_filter.c:768: 2022-12-09T19:37:12,281 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-12-09T19:37:12,281 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-12-09T19:37:12,281 | ^~~~~~~ 2022-12-09T19:37:18,763 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_filter.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2022-12-09T19:37:18,897 building 'biom._transform' extension 2022-12-09T19:37:18,898 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-cpython-39/biom/_transform.o 2022-12-09T19:37:19,241 In file included from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2022-12-09T19:37:19,241 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-12-09T19:37:19,241 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-12-09T19:37:19,242 from biom/_transform.c:768: 2022-12-09T19:37:19,242 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-12-09T19:37:19,242 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-12-09T19:37:19,242 | ^~~~~~~ 2022-12-09T19:37:21,592 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_transform.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2022-12-09T19:37:21,710 building 'biom._subsample' extension 2022-12-09T19:37:21,711 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-cpython-39/biom/_subsample.o 2022-12-09T19:37:22,040 In file included from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948, 2022-12-09T19:37:22,041 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2022-12-09T19:37:22,041 from /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2022-12-09T19:37:22,041 from biom/_subsample.c:768: 2022-12-09T19:37:22,041 /tmp/pip-build-env-6imyo8vl/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2022-12-09T19:37:22,041 17 | #warning "Using deprecated NumPy API, disable it with " \ 2022-12-09T19:37:22,041 | ^~~~~~~ 2022-12-09T19:37:26,552 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_subsample.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2022-12-09T19:37:26,695 installing to build/bdist.linux-armv7l/wheel 2022-12-09T19:37:26,696 running install 2022-12-09T19:37:26,722 running install_lib 2022-12-09T19:37:26,731 creating build/bdist.linux-armv7l 2022-12-09T19:37:26,732 creating build/bdist.linux-armv7l/wheel 2022-12-09T19:37:26,734 creating build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:26,735 copying build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:26,741 copying build/lib.linux-armv7l-cpython-39/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:26,744 copying build/lib.linux-armv7l-cpython-39/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:26,747 copying build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:26,758 creating build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:26,759 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_err.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:26,763 creating build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,764 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/empty.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,767 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,769 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,771 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,775 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,777 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/no-contents.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,779 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,780 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2022-12-09T19:37:26,782 copying build/lib.linux-armv7l-cpython-39/biom/tests/long_lines.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:26,787 creating build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,788 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,791 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,796 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,809 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,825 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,828 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,844 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,861 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,863 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,865 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,867 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,926 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,929 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,931 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,934 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,938 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,948 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,951 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,954 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,967 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:26,977 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,024 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,029 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,033 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,035 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,037 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,047 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,526 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,530 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,545 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,547 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,549 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,554 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,564 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,583 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,586 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,596 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,600 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,608 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,675 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,678 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,686 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,691 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,695 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,699 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,702 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,706 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,709 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,712 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,760 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,762 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,764 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,778 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,782 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,797 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,801 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,804 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,808 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,811 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,813 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,818 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,822 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,825 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,829 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,832 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,834 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,838 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,840 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,851 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,854 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,856 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,859 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,869 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,872 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,874 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,876 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,977 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:27,981 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,027 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,030 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,032 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,034 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,046 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,048 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,052 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,055 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,058 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,067 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,083 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,091 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,093 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,102 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,106 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,108 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,111 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,114 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2022-12-09T19:37:28,127 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,128 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,130 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,132 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,135 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2022-12-09T19:37:28,136 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2022-12-09T19:37:28,138 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2022-12-09T19:37:28,140 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2022-12-09T19:37:28,144 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2022-12-09T19:37:28,146 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,149 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,151 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,154 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,157 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,159 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2022-12-09T19:37:28,162 copying build/lib.linux-armv7l-cpython-39/biom/tests/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:28,163 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:28,168 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_util.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:28,171 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_table.py -> build/bdist.linux-armv7l/wheel/biom/tests 2022-12-09T19:37:28,178 copying build/lib.linux-armv7l-cpython-39/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,181 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,183 copying build/lib.linux-armv7l-cpython-39/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,186 copying build/lib.linux-armv7l-cpython-39/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,188 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,197 creating build/bdist.linux-armv7l/wheel/biom/assets 2022-12-09T19:37:28,198 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_cli.sh -> build/bdist.linux-armv7l/wheel/biom/assets 2022-12-09T19:37:28,200 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_api.py -> build/bdist.linux-armv7l/wheel/biom/assets 2022-12-09T19:37:28,203 copying build/lib.linux-armv7l-cpython-39/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,209 copying build/lib.linux-armv7l-cpython-39/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,211 copying build/lib.linux-armv7l-cpython-39/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2022-12-09T19:37:28,214 creating build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,215 copying build/lib.linux-armv7l-cpython-39/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,217 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,219 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,221 copying build/lib.linux-armv7l-cpython-39/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,223 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,226 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,229 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,231 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_exporter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,233 copying build/lib.linux-armv7l-cpython-39/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,236 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,238 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,241 copying build/lib.linux-armv7l-cpython-39/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,243 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_ids.py -> build/bdist.linux-armv7l/wheel/biom/cli 2022-12-09T19:37:28,244 running install_egg_info 2022-12-09T19:37:28,260 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.13-py3.9.egg-info 2022-12-09T19:37:28,274 running install_scripts 2022-12-09T19:37:28,358 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.13.dist-info/WHEEL 2022-12-09T19:37:28,360 creating '/tmp/pip-wheel-un9r2of1/.tmp-3_cmm7sw/biom_format-2.1.13-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-09T19:37:28,363 adding 'biom/__init__.py' 2022-12-09T19:37:28,453 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2022-12-09T19:37:28,457 adding 'biom/_filter.pyx' 2022-12-09T19:37:28,513 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2022-12-09T19:37:28,517 adding 'biom/_subsample.pyx' 2022-12-09T19:37:28,551 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2022-12-09T19:37:28,554 adding 'biom/_transform.pyx' 2022-12-09T19:37:28,556 adding 'biom/err.py' 2022-12-09T19:37:28,557 adding 'biom/exception.py' 2022-12-09T19:37:28,561 adding 'biom/parse.py' 2022-12-09T19:37:28,583 adding 'biom/table.py' 2022-12-09T19:37:28,587 adding 'biom/util.py' 2022-12-09T19:37:28,589 adding 'biom/assets/exercise_api.py' 2022-12-09T19:37:28,590 adding 'biom/assets/exercise_cli.sh' 2022-12-09T19:37:28,592 adding 'biom/cli/__init__.py' 2022-12-09T19:37:28,594 adding 'biom/cli/installation_informer.py' 2022-12-09T19:37:28,596 adding 'biom/cli/metadata_adder.py' 2022-12-09T19:37:28,597 adding 'biom/cli/metadata_exporter.py' 2022-12-09T19:37:28,599 adding 'biom/cli/table_converter.py' 2022-12-09T19:37:28,600 adding 'biom/cli/table_head.py' 2022-12-09T19:37:28,602 adding 'biom/cli/table_ids.py' 2022-12-09T19:37:28,603 adding 'biom/cli/table_normalizer.py' 2022-12-09T19:37:28,605 adding 'biom/cli/table_subsetter.py' 2022-12-09T19:37:28,607 adding 'biom/cli/table_summarizer.py' 2022-12-09T19:37:28,609 adding 'biom/cli/table_validator.py' 2022-12-09T19:37:28,611 adding 'biom/cli/uc_processor.py' 2022-12-09T19:37:28,612 adding 'biom/cli/util.py' 2022-12-09T19:37:28,614 adding 'biom/tests/__init__.py' 2022-12-09T19:37:28,616 adding 'biom/tests/long_lines.py' 2022-12-09T19:37:28,617 adding 'biom/tests/test_err.py' 2022-12-09T19:37:28,622 adding 'biom/tests/test_parse.py' 2022-12-09T19:37:28,637 adding 'biom/tests/test_table.py' 2022-12-09T19:37:28,640 adding 'biom/tests/test_util.py' 2022-12-09T19:37:28,654 adding 'biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz' 2022-12-09T19:37:28,758 adding 'biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:28,844 adding 'biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz' 2022-12-09T19:37:28,980 adding 'biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:29,559 adding 'biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz' 2022-12-09T19:37:30,054 adding 'biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:30,089 adding 'biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz' 2022-12-09T19:37:30,146 adding 'biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:30,178 adding 'biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz' 2022-12-09T19:37:30,254 adding 'biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:30,512 adding 'biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz' 2022-12-09T19:37:30,785 adding 'biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:30,799 adding 'biom/tests/bench_tables/10000x100x0.001_bench.biom.gz' 2022-12-09T19:37:30,850 adding 'biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:30,857 adding 'biom/tests/bench_tables/10000x100x0.010_bench.biom.gz' 2022-12-09T19:37:30,909 adding 'biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:30,930 adding 'biom/tests/bench_tables/10000x100x0.100_bench.biom.gz' 2022-12-09T19:37:30,994 adding 'biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:30,999 adding 'biom/tests/bench_tables/10000x10x0.001_bench.biom.gz' 2022-12-09T19:37:31,048 adding 'biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:31,052 adding 'biom/tests/bench_tables/10000x10x0.010_bench.biom.gz' 2022-12-09T19:37:31,101 adding 'biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:31,107 adding 'biom/tests/bench_tables/10000x10x0.100_bench.biom.gz' 2022-12-09T19:37:31,158 adding 'biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:31,165 adding 'biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz' 2022-12-09T19:37:31,220 adding 'biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:31,261 adding 'biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz' 2022-12-09T19:37:31,341 adding 'biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:31,651 adding 'biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz' 2022-12-09T19:37:32,002 adding 'biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,019 adding 'biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz' 2022-12-09T19:37:32,031 adding 'biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,034 adding 'biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz' 2022-12-09T19:37:32,045 adding 'biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,054 adding 'biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz' 2022-12-09T19:37:32,068 adding 'biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,070 adding 'biom/tests/bench_tables/1000x100x0.001_bench.biom.gz' 2022-12-09T19:37:32,076 adding 'biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,079 adding 'biom/tests/bench_tables/1000x100x0.010_bench.biom.gz' 2022-12-09T19:37:32,085 adding 'biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,090 adding 'biom/tests/bench_tables/1000x100x0.100_bench.biom.gz' 2022-12-09T19:37:32,097 adding 'biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,099 adding 'biom/tests/bench_tables/1000x10x0.001_bench.biom.gz' 2022-12-09T19:37:32,105 adding 'biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,108 adding 'biom/tests/bench_tables/1000x10x0.010_bench.biom.gz' 2022-12-09T19:37:32,114 adding 'biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,116 adding 'biom/tests/bench_tables/1000x10x0.100_bench.biom.gz' 2022-12-09T19:37:32,122 adding 'biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,125 adding 'biom/tests/bench_tables/100x10000x0.001_bench.biom.gz' 2022-12-09T19:37:32,174 adding 'biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,182 adding 'biom/tests/bench_tables/100x10000x0.010_bench.biom.gz' 2022-12-09T19:37:32,233 adding 'biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,267 adding 'biom/tests/bench_tables/100x10000x0.100_bench.biom.gz' 2022-12-09T19:37:32,343 adding 'biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,348 adding 'biom/tests/bench_tables/100x1000x0.001_bench.biom.gz' 2022-12-09T19:37:32,354 adding 'biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,356 adding 'biom/tests/bench_tables/100x1000x0.010_bench.biom.gz' 2022-12-09T19:37:32,362 adding 'biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,367 adding 'biom/tests/bench_tables/100x1000x0.100_bench.biom.gz' 2022-12-09T19:37:32,375 adding 'biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,377 adding 'biom/tests/bench_tables/100x100x0.001_bench.biom.gz' 2022-12-09T19:37:32,380 adding 'biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,382 adding 'biom/tests/bench_tables/100x100x0.010_bench.biom.gz' 2022-12-09T19:37:32,384 adding 'biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,386 adding 'biom/tests/bench_tables/100x100x0.100_bench.biom.gz' 2022-12-09T19:37:32,389 adding 'biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,391 adding 'biom/tests/bench_tables/100x10x0.001_bench.biom.gz' 2022-12-09T19:37:32,394 adding 'biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,396 adding 'biom/tests/bench_tables/100x10x0.010_bench.biom.gz' 2022-12-09T19:37:32,398 adding 'biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,400 adding 'biom/tests/bench_tables/100x10x0.100_bench.biom.gz' 2022-12-09T19:37:32,403 adding 'biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,405 adding 'biom/tests/bench_tables/10x10000x0.001_bench.biom.gz' 2022-12-09T19:37:32,454 adding 'biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,459 adding 'biom/tests/bench_tables/10x10000x0.010_bench.biom.gz' 2022-12-09T19:37:32,508 adding 'biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,514 adding 'biom/tests/bench_tables/10x10000x0.100_bench.biom.gz' 2022-12-09T19:37:32,565 adding 'biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,569 adding 'biom/tests/bench_tables/10x1000x0.001_bench.biom.gz' 2022-12-09T19:37:32,575 adding 'biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,577 adding 'biom/tests/bench_tables/10x1000x0.010_bench.biom.gz' 2022-12-09T19:37:32,583 adding 'biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,585 adding 'biom/tests/bench_tables/10x1000x0.100_bench.biom.gz' 2022-12-09T19:37:32,591 adding 'biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,593 adding 'biom/tests/bench_tables/10x100x0.001_bench.biom.gz' 2022-12-09T19:37:32,595 adding 'biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,597 adding 'biom/tests/bench_tables/10x100x0.010_bench.biom.gz' 2022-12-09T19:37:32,600 adding 'biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,602 adding 'biom/tests/bench_tables/10x100x0.100_bench.biom.gz' 2022-12-09T19:37:32,604 adding 'biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,606 adding 'biom/tests/bench_tables/10x10x0.001_bench.biom.gz' 2022-12-09T19:37:32,609 adding 'biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz' 2022-12-09T19:37:32,610 adding 'biom/tests/bench_tables/10x10x0.010_bench.biom.gz' 2022-12-09T19:37:32,613 adding 'biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz' 2022-12-09T19:37:32,614 adding 'biom/tests/bench_tables/10x10x0.100_bench.biom.gz' 2022-12-09T19:37:32,617 adding 'biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz' 2022-12-09T19:37:32,619 adding 'biom/tests/test_cli/__init__.py' 2022-12-09T19:37:32,621 adding 'biom/tests/test_cli/test_add_metadata.py' 2022-12-09T19:37:32,622 adding 'biom/tests/test_cli/test_show_install_info.py' 2022-12-09T19:37:32,624 adding 'biom/tests/test_cli/test_subset_table.py' 2022-12-09T19:37:32,626 adding 'biom/tests/test_cli/test_summarize_table.py' 2022-12-09T19:37:32,628 adding 'biom/tests/test_cli/test_table_converter.py' 2022-12-09T19:37:32,629 adding 'biom/tests/test_cli/test_table_normalizer.py' 2022-12-09T19:37:32,630 adding 'biom/tests/test_cli/test_uc_processor.py' 2022-12-09T19:37:32,633 adding 'biom/tests/test_cli/test_validate_table.py' 2022-12-09T19:37:32,635 adding 'biom/tests/test_cli/test_data/json_obs_collapsed.biom' 2022-12-09T19:37:32,637 adding 'biom/tests/test_cli/test_data/json_sample_collapsed.biom' 2022-12-09T19:37:32,639 adding 'biom/tests/test_cli/test_data/test.biom' 2022-12-09T19:37:32,641 adding 'biom/tests/test_cli/test_data/test.json' 2022-12-09T19:37:32,643 adding 'biom/tests/test_data/__init__.py' 2022-12-09T19:37:32,644 adding 'biom/tests/test_data/bad_table.txt' 2022-12-09T19:37:32,646 adding 'biom/tests/test_data/bad_table.txt.gz' 2022-12-09T19:37:32,648 adding 'biom/tests/test_data/empty.biom' 2022-12-09T19:37:32,649 adding 'biom/tests/test_data/no-contents.biom' 2022-12-09T19:37:32,652 adding 'biom/tests/test_data/test.biom' 2022-12-09T19:37:32,654 adding 'biom/tests/test_data/test.json' 2022-12-09T19:37:32,655 adding 'biom/tests/test_data/test.json.gz' 2022-12-09T19:37:32,658 adding 'biom_format-2.1.13.dist-info/COPYING.txt' 2022-12-09T19:37:32,659 adding 'biom_format-2.1.13.dist-info/METADATA' 2022-12-09T19:37:32,660 adding 'biom_format-2.1.13.dist-info/WHEEL' 2022-12-09T19:37:32,661 adding 'biom_format-2.1.13.dist-info/entry_points.txt' 2022-12-09T19:37:32,662 adding 'biom_format-2.1.13.dist-info/top_level.txt' 2022-12-09T19:37:32,665 adding 'biom_format-2.1.13.dist-info/RECORD' 2022-12-09T19:37:32,852 removing build/bdist.linux-armv7l/wheel 2022-12-09T19:37:33,151 Building wheel for biom-format (pyproject.toml): finished with status 'done' 2022-12-09T19:37:33,409 Created wheel for biom-format: filename=biom_format-2.1.13-cp39-cp39-linux_armv7l.whl size=11993177 sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a 2022-12-09T19:37:33,410 Stored in directory: /tmp/pip-ephem-wheel-cache-5_a7jb85/wheels/18/a9/28/5b4f3076f6bd9d29ab61c049153be62605b92a366509708541 2022-12-09T19:37:33,433 Successfully built biom-format 2022-12-09T19:37:33,771 Removed build tracker: '/tmp/pip-build-tracker-il_rpb7j'