2022-12-09T22:13:06,665 Created temporary directory: /tmp/pip-ephem-wheel-cache-gr_ptezh
2022-12-09T22:13:06,671 Created temporary directory: /tmp/pip-build-tracker-rjvxrsww
2022-12-09T22:13:06,671 Initialized build tracking at /tmp/pip-build-tracker-rjvxrsww
2022-12-09T22:13:06,672 Created build tracker: /tmp/pip-build-tracker-rjvxrsww
2022-12-09T22:13:06,672 Entered build tracker: /tmp/pip-build-tracker-rjvxrsww
2022-12-09T22:13:06,673 Created temporary directory: /tmp/pip-wheel-odhaiz1b
2022-12-09T22:13:06,681 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-09T22:13:06,687 Created temporary directory: /tmp/pip-ephem-wheel-cache-5ezhmbfd
2022-12-09T22:13:06,739 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-09T22:13:06,746 2 location(s) to search for versions of satmut-utils:
2022-12-09T22:13:06,746 * https://pypi.org/simple/satmut-utils/
2022-12-09T22:13:06,746 * https://www.piwheels.org/simple/satmut-utils/
2022-12-09T22:13:06,748 Fetching project page and analyzing links: https://pypi.org/simple/satmut-utils/
2022-12-09T22:13:06,748 Getting page https://pypi.org/simple/satmut-utils/
2022-12-09T22:13:06,752 Found index url https://pypi.org/simple
2022-12-09T22:13:06,994 Fetched page https://pypi.org/simple/satmut-utils/ as application/vnd.pypi.simple.v1+json
2022-12-09T22:13:06,999   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/9d/7d/aa6a904965242a0c56c1ecc510cf3f4840936f6087b6f0203a9a718743c1/satmut_utils-1.0.0-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-12-09T22:13:07,000   Found link https://files.pythonhosted.org/packages/a8/1b/4fc621a1dc7184b5ebb199d33f4792ce7755b61281fdf2313793423adfb9/satmut_utils-1.0.0.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.0
2022-12-09T22:13:07,001   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/c1/c3/5c2d910cb9364b7f3a8ef7bea6aef6914c374cc1cfe7b7a217f4329fb167/satmut_utils-1.0.1-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-12-09T22:13:07,002   Found link https://files.pythonhosted.org/packages/3c/cb/1f7123f703b841687553195526b0253c632b3b13f17dbeefd1f24bfa7e9e/satmut_utils-1.0.1.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.1
2022-12-09T22:13:07,003   Skipping link: No binaries permitted for satmut-utils: https://files.pythonhosted.org/packages/66/c0/576dbee34d884808eac267f6726c217d0bb366d6aa0d0d24fea1f1103def/satmut_utils-1.0.2-py3-none-any.whl (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-12-09T22:13:07,004   Found link https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz (from https://pypi.org/simple/satmut-utils/) (requires-python:>=3.7), version: 1.0.2
2022-12-09T22:13:07,005 Fetching project page and analyzing links: https://www.piwheels.org/simple/satmut-utils/
2022-12-09T22:13:07,006 Getting page https://www.piwheels.org/simple/satmut-utils/
2022-12-09T22:13:07,008 Found index url https://www.piwheels.org/simple
2022-12-09T22:13:07,224 Fetched page https://www.piwheels.org/simple/satmut-utils/ as text/html
2022-12-09T22:13:07,227   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.1-py3-none-any.whl#sha256=3f7c43b678b5e344409e2cb0718742684066d907768826a7d19b85b4c43adae6 (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-12-09T22:13:07,228   Skipping link: No binaries permitted for satmut-utils: https://www.piwheels.org/simple/satmut-utils/satmut_utils-1.0.0-py3-none-any.whl#sha256=851816d46080d9e7a7ac2f235ea191e2a32f936dbd625d4caff953f6b4c1495c (from https://www.piwheels.org/simple/satmut-utils/) (requires-python:>=3.7)
2022-12-09T22:13:07,229 Skipping link: not a file: https://www.piwheels.org/simple/satmut-utils/
2022-12-09T22:13:07,229 Skipping link: not a file: https://pypi.org/simple/satmut-utils/
2022-12-09T22:13:07,262 Given no hashes to check 1 links for project 'satmut-utils': discarding no candidates
2022-12-09T22:13:07,295 Collecting satmut-utils==1.0.2
2022-12-09T22:13:07,300   Created temporary directory: /tmp/pip-unpack-es5my9cx
2022-12-09T22:13:08,518   Downloading satmut_utils-1.0.2.tar.gz (12.0 MB)
2022-12-09T22:13:12,696   Added satmut-utils==1.0.2 from https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-rjvxrsww'
2022-12-09T22:13:12,706   Created temporary directory: /tmp/pip-build-env-kxnjvv0y
2022-12-09T22:13:12,717   Installing build dependencies: started
2022-12-09T22:13:12,720   Running command pip subprocess to install build dependencies
2022-12-09T22:13:15,396   Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2022-12-09T22:13:16,193   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-09T22:13:16,246   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-09T22:13:20,030   Collecting setuptools>=59
2022-12-09T22:13:20,310     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB)
2022-12-09T22:13:20,996   Collecting wheel
2022-12-09T22:13:21,030     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2022-12-09T22:13:26,425   Installing collected packages: wheel, setuptools
2022-12-09T22:13:26,708     Creating /tmp/pip-build-env-kxnjvv0y/overlay/bin
2022-12-09T22:13:26,712     changing mode of /tmp/pip-build-env-kxnjvv0y/overlay/bin/wheel to 755
2022-12-09T22:13:31,488   Successfully installed setuptools-65.6.3 wheel-0.38.4

2022-12-09T22:13:31,519   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-12-09T22:13:31,520   [notice] To update, run: python3 -m pip install --upgrade pip
2022-12-09T22:13:31,950   Installing build dependencies: finished with status 'done'
2022-12-09T22:13:31,961   Getting requirements to build wheel: started
2022-12-09T22:13:31,963   Running command Getting requirements to build wheel
2022-12-09T22:13:34,151   running egg_info
2022-12-09T22:13:34,165   writing src/satmut_utils.egg-info/PKG-INFO
2022-12-09T22:13:34,170   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2022-12-09T22:13:34,175   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2022-12-09T22:13:34,179   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2022-12-09T22:13:34,229   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:34,237   reading manifest template 'MANIFEST.in'
2022-12-09T22:13:34,246   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-12-09T22:13:34,247   adding license file 'LICENSE.txt'
2022-12-09T22:13:34,260   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:34,460   Getting requirements to build wheel: finished with status 'done'
2022-12-09T22:13:34,480   Created temporary directory: /tmp/pip-modern-metadata-oryulpiy
2022-12-09T22:13:34,486   Preparing metadata (pyproject.toml): started
2022-12-09T22:13:34,488   Running command Preparing metadata (pyproject.toml)
2022-12-09T22:13:36,380   running dist_info
2022-12-09T22:13:36,423   creating /tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info
2022-12-09T22:13:36,433   writing /tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/PKG-INFO
2022-12-09T22:13:36,438   writing dependency_links to /tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/dependency_links.txt
2022-12-09T22:13:36,443   writing entry points to /tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/entry_points.txt
2022-12-09T22:13:36,446   writing top-level names to /tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/top_level.txt
2022-12-09T22:13:36,449   writing manifest file '/tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:36,499   reading manifest file '/tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:36,507   reading manifest template 'MANIFEST.in'
2022-12-09T22:13:36,514   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-12-09T22:13:36,515   adding license file 'LICENSE.txt'
2022-12-09T22:13:36,525   writing manifest file '/tmp/pip-modern-metadata-oryulpiy/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:36,527   creating '/tmp/pip-modern-metadata-oryulpiy/satmut_utils-1.0.2.dist-info'
2022-12-09T22:13:36,884   Preparing metadata (pyproject.toml): finished with status 'done'
2022-12-09T22:13:36,899   Source in /tmp/pip-wheel-odhaiz1b/satmut-utils_d6a59f771d4f4e53ae317315f4757a2f has version 1.0.2, which satisfies requirement satmut-utils==1.0.2 from https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz
2022-12-09T22:13:36,901   Removed satmut-utils==1.0.2 from https://files.pythonhosted.org/packages/4b/1b/2697ef2eb5e7fc90aaeb8fbe64d2c24069dbd0871f1fb6b23e5c7f66273f/satmut_utils-1.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-rjvxrsww'
2022-12-09T22:13:36,915 Created temporary directory: /tmp/pip-unpack-1ffgd2m9
2022-12-09T22:13:36,916 Building wheels for collected packages: satmut-utils
2022-12-09T22:13:36,925   Created temporary directory: /tmp/pip-wheel-f91olxx1
2022-12-09T22:13:36,926   Destination directory: /tmp/pip-wheel-f91olxx1
2022-12-09T22:13:36,932   Building wheel for satmut-utils (pyproject.toml): started
2022-12-09T22:13:36,934   Running command Building wheel for satmut-utils (pyproject.toml)
2022-12-09T22:13:38,866   running bdist_wheel
2022-12-09T22:13:38,938   running build
2022-12-09T22:13:38,939   running build_py
2022-12-09T22:13:38,955   creating build
2022-12-09T22:13:38,956   creating build/lib
2022-12-09T22:13:38,957   creating build/lib/analysis
2022-12-09T22:13:38,960   copying src/analysis/__init__.py -> build/lib/analysis
2022-12-09T22:13:38,963   copying src/analysis/coordinate_mapper.py -> build/lib/analysis
2022-12-09T22:13:38,968   copying src/analysis/aligners.py -> build/lib/analysis
2022-12-09T22:13:38,972   copying src/analysis/references.py -> build/lib/analysis
2022-12-09T22:13:38,976   copying src/analysis/variant_caller.py -> build/lib/analysis
2022-12-09T22:13:38,982   copying src/analysis/seq_utils.py -> build/lib/analysis
2022-12-09T22:13:38,987   copying src/analysis/read_preprocessor.py -> build/lib/analysis
2022-12-09T22:13:38,995   copying src/analysis/read_editor.py -> build/lib/analysis
2022-12-09T22:13:39,001   creating build/lib/tests
2022-12-09T22:13:39,003   copying src/tests/__init__.py -> build/lib/tests
2022-12-09T22:13:39,007   creating build/lib/satmut_utils
2022-12-09T22:13:39,009   copying src/satmut_utils/__init__.py -> build/lib/satmut_utils
2022-12-09T22:13:39,012   copying src/satmut_utils/satmut_utils.py -> build/lib/satmut_utils
2022-12-09T22:13:39,018   copying src/satmut_utils/definitions.py -> build/lib/satmut_utils
2022-12-09T22:13:39,023   creating build/lib/core_utils
2022-12-09T22:13:39,024   copying src/core_utils/__init__.py -> build/lib/core_utils
2022-12-09T22:13:39,027   copying src/core_utils/feature_file_utils.py -> build/lib/core_utils
2022-12-09T22:13:39,032   copying src/core_utils/file_utils.py -> build/lib/core_utils
2022-12-09T22:13:39,035   copying src/core_utils/vcf_utils.py -> build/lib/core_utils
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2022-12-09T22:13:39,045   creating build/lib/scripts
2022-12-09T22:13:39,047   copying src/scripts/__init__.py -> build/lib/scripts
2022-12-09T22:13:39,050   copying src/scripts/run_fastq_preprocessor.py -> build/lib/scripts
2022-12-09T22:13:39,054   copying src/scripts/run_bowtie2_aligner.py -> build/lib/scripts
2022-12-09T22:13:39,060   creating build/lib/tests/analysis
2022-12-09T22:13:39,062   copying src/tests/analysis/test_read_editor.py -> build/lib/tests/analysis
2022-12-09T22:13:39,068   copying src/tests/analysis/__init__.py -> build/lib/tests/analysis
2022-12-09T22:13:39,071   copying src/tests/analysis/test_aligners.py -> build/lib/tests/analysis
2022-12-09T22:13:39,074   copying src/tests/analysis/test_seq_utils.py -> build/lib/tests/analysis
2022-12-09T22:13:39,079   copying src/tests/analysis/test_read_preprocessor.py -> build/lib/tests/analysis
2022-12-09T22:13:39,086   copying src/tests/analysis/test_references.py -> build/lib/tests/analysis
2022-12-09T22:13:39,091   copying src/tests/analysis/test_coordinate_mapper.py -> build/lib/tests/analysis
2022-12-09T22:13:39,095   copying src/tests/analysis/test_variant_caller.py -> build/lib/tests/analysis
2022-12-09T22:13:39,103   creating build/lib/tests/test_data
2022-12-09T22:13:39,104   copying src/tests/test_data/__init__.py -> build/lib/tests/test_data
2022-12-09T22:13:39,109   creating build/lib/tests/core_utils
2022-12-09T22:13:39,111   copying src/tests/core_utils/__init__.py -> build/lib/tests/core_utils
2022-12-09T22:13:39,114   copying src/tests/core_utils/test_file_utils.py -> build/lib/tests/core_utils
2022-12-09T22:13:39,117   copying src/tests/core_utils/test_feature_file_utils.py -> build/lib/tests/core_utils
2022-12-09T22:13:39,121   copying src/tests/core_utils/test_string_utils.py -> build/lib/tests/core_utils
2022-12-09T22:13:39,125   running egg_info
2022-12-09T22:13:39,169   writing src/satmut_utils.egg-info/PKG-INFO
2022-12-09T22:13:39,173   writing dependency_links to src/satmut_utils.egg-info/dependency_links.txt
2022-12-09T22:13:39,177   writing entry points to src/satmut_utils.egg-info/entry_points.txt
2022-12-09T22:13:39,180   writing top-level names to src/satmut_utils.egg-info/top_level.txt
2022-12-09T22:13:39,207   reading manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:39,215   reading manifest template 'MANIFEST.in'
2022-12-09T22:13:39,222   warning: no previously-included files matching '*.py[cod]' found anywhere in distribution
2022-12-09T22:13:39,223   adding license file 'LICENSE.txt'
2022-12-09T22:13:39,236   writing manifest file 'src/satmut_utils.egg-info/SOURCES.txt'
2022-12-09T22:13:39,250   copying src/tests/test_data/CBS.fa -> build/lib/tests/test_data
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2022-12-09T22:13:40,195   copying src/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/lib/tests/test_data
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2022-12-09T22:13:40,283   installing to build/bdist.linux-armv7l/wheel
2022-12-09T22:13:40,284   running install
2022-12-09T22:13:40,347   running install_lib
2022-12-09T22:13:40,364   creating build/bdist.linux-armv7l
2022-12-09T22:13:40,365   creating build/bdist.linux-armv7l/wheel
2022-12-09T22:13:40,369   creating build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,371   copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,375   copying build/lib/analysis/coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,380   copying build/lib/analysis/aligners.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,385   copying build/lib/analysis/references.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,389   copying build/lib/analysis/variant_caller.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,396   copying build/lib/analysis/seq_utils.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,402   copying build/lib/analysis/read_preprocessor.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,410   copying build/lib/analysis/read_editor.py -> build/bdist.linux-armv7l/wheel/analysis
2022-12-09T22:13:40,418   creating build/bdist.linux-armv7l/wheel/tests
2022-12-09T22:13:40,419   copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests
2022-12-09T22:13:40,425   creating build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,426   copying build/lib/tests/analysis/test_read_editor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,435   copying build/lib/tests/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,439   copying build/lib/tests/analysis/test_aligners.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,443   copying build/lib/tests/analysis/test_seq_utils.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,448   copying build/lib/tests/analysis/test_read_preprocessor.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,456   copying build/lib/tests/analysis/test_references.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,461   copying build/lib/tests/analysis/test_coordinate_mapper.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,465   copying build/lib/tests/analysis/test_variant_caller.py -> build/bdist.linux-armv7l/wheel/tests/analysis
2022-12-09T22:13:40,478   creating build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,480   copying build/lib/tests/test_data/CBS_pEZY3.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,484   copying build/lib/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,487   copying build/lib/tests/test_data/CBS_pEZY3.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,492   copying build/lib/tests/test_data/CBS_sim.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,496   copying build/lib/tests/test_data/appris_human_v1_actual_regions_gene_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,499   copying build/lib/tests/test_data/CBS.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,503   copying build/lib/tests/test_data/CBS_sim.vcf -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,507   copying build/lib/tests/test_data/appris_human_v1_actual_regions_trx_ids.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,511   copying build/lib/tests/test_data/CBS_sim.R1.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,514   copying build/lib/tests/test_data/appris_human_v1_actual_regions_contigs.txt -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,518   copying build/lib/tests/test_data/test_preprocess.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,521   copying build/lib/tests/test_data/gencode.v29.annotation.gtf -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,527   copying build/lib/tests/test_data/CBS_pEZY3_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,531   copying build/lib/tests/test_data/CBS_sim.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,534   copying build/lib/tests/test_data/CBS_pEZY3.fa.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,538   copying build/lib/tests/test_data/GRCh38.chr21.fa.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,976   copying build/lib/tests/test_data/test_preprocess.sort.bam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,980   copying build/lib/tests/test_data/test_preprocess.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,984   copying build/lib/tests/test_data/test_preprocess.sam -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,988   copying build/lib/tests/test_data/CBS.gff -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,993   copying build/lib/tests/test_data/test_preprocess.sort.bam.bai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:40,996   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,001   copying build/lib/tests/test_data/CBS_pEZY3.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,005   copying build/lib/tests/test_data/CBS_pEZY3.fa.3.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,008   copying build/lib/tests/test_data/CBS_sim.R2.fq.gz -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,012   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.2.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,016   copying build/lib/tests/test_data/CBS_pEZY3.fa.rev.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,234   copying build/lib/tests/test_data/CBS_pEZY3_targets.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,238   copying build/lib/tests/test_data/CBS_pEZY3.fa.1.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,459   copying build/lib/tests/test_data/appris_human_24_01_2019_selected.fa.fai -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,463   copying build/lib/tests/test_data/PKNOX1.fa -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,467   copying build/lib/tests/test_data/CBS_sim_primers.bed -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,471   copying build/lib/tests/test_data/CBS_pEZY3.fa.4.bt2 -> build/bdist.linux-armv7l/wheel/tests/test_data
2022-12-09T22:13:41,476   creating build/bdist.linux-armv7l/wheel/tests/core_utils
2022-12-09T22:13:41,477   copying build/lib/tests/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-12-09T22:13:41,481   copying build/lib/tests/core_utils/test_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-12-09T22:13:41,484   copying build/lib/tests/core_utils/test_feature_file_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-12-09T22:13:41,488   copying build/lib/tests/core_utils/test_string_utils.py -> build/bdist.linux-armv7l/wheel/tests/core_utils
2022-12-09T22:13:41,493   creating build/bdist.linux-armv7l/wheel/satmut_utils
2022-12-09T22:13:41,495   copying build/lib/satmut_utils/__init__.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-12-09T22:13:41,498   copying build/lib/satmut_utils/satmut_utils.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-12-09T22:13:41,503   copying build/lib/satmut_utils/definitions.py -> build/bdist.linux-armv7l/wheel/satmut_utils
2022-12-09T22:13:41,508   creating build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,510   copying build/lib/core_utils/__init__.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,513   copying build/lib/core_utils/feature_file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,517   copying build/lib/core_utils/file_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,521   copying build/lib/core_utils/vcf_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,527   copying build/lib/core_utils/string_utils.py -> build/bdist.linux-armv7l/wheel/core_utils
2022-12-09T22:13:41,531   creating build/bdist.linux-armv7l/wheel/scripts
2022-12-09T22:13:41,533   copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts
2022-12-09T22:13:41,536   copying build/lib/scripts/run_fastq_preprocessor.py -> build/bdist.linux-armv7l/wheel/scripts
2022-12-09T22:13:41,542   copying build/lib/scripts/run_bowtie2_aligner.py -> build/bdist.linux-armv7l/wheel/scripts
2022-12-09T22:13:41,546   running install_egg_info
2022-12-09T22:13:41,570   Copying src/satmut_utils.egg-info to build/bdist.linux-armv7l/wheel/satmut_utils-1.0.2-py3.7.egg-info
2022-12-09T22:13:41,594   running install_scripts
2022-12-09T22:13:41,738   creating build/bdist.linux-armv7l/wheel/satmut_utils-1.0.2.dist-info/WHEEL
2022-12-09T22:13:41,743   creating '/tmp/pip-wheel-f91olxx1/.tmp-bzhbppfr/satmut_utils-1.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-09T22:13:41,748   adding 'analysis/__init__.py'
2022-12-09T22:13:41,752   adding 'analysis/aligners.py'
2022-12-09T22:13:41,758   adding 'analysis/coordinate_mapper.py'
2022-12-09T22:13:41,770   adding 'analysis/read_editor.py'
2022-12-09T22:13:41,792   adding 'analysis/read_preprocessor.py'
2022-12-09T22:13:41,797   adding 'analysis/references.py'
2022-12-09T22:13:41,804   adding 'analysis/seq_utils.py'
2022-12-09T22:13:41,818   adding 'analysis/variant_caller.py'
2022-12-09T22:13:41,823   adding 'core_utils/__init__.py'
2022-12-09T22:13:41,827   adding 'core_utils/feature_file_utils.py'
2022-12-09T22:13:41,830   adding 'core_utils/file_utils.py'
2022-12-09T22:13:41,832   adding 'core_utils/string_utils.py'
2022-12-09T22:13:41,840   adding 'core_utils/vcf_utils.py'
2022-12-09T22:13:41,846   adding 'satmut_utils/__init__.py'
2022-12-09T22:13:41,848   adding 'satmut_utils/definitions.py'
2022-12-09T22:13:41,856   adding 'satmut_utils/satmut_utils.py'
2022-12-09T22:13:41,863   adding 'scripts/__init__.py'
2022-12-09T22:13:41,866   adding 'scripts/run_bowtie2_aligner.py'
2022-12-09T22:13:41,869   adding 'scripts/run_fastq_preprocessor.py'
2022-12-09T22:13:41,873   adding 'tests/__init__.py'
2022-12-09T22:13:41,876   adding 'tests/analysis/__init__.py'
2022-12-09T22:13:41,879   adding 'tests/analysis/test_aligners.py'
2022-12-09T22:13:41,883   adding 'tests/analysis/test_coordinate_mapper.py'
2022-12-09T22:13:41,891   adding 'tests/analysis/test_read_editor.py'
2022-12-09T22:13:41,904   adding 'tests/analysis/test_read_preprocessor.py'
2022-12-09T22:13:41,909   adding 'tests/analysis/test_references.py'
2022-12-09T22:13:41,914   adding 'tests/analysis/test_seq_utils.py'
2022-12-09T22:13:41,922   adding 'tests/analysis/test_variant_caller.py'
2022-12-09T22:13:41,926   adding 'tests/core_utils/__init__.py'
2022-12-09T22:13:41,930   adding 'tests/core_utils/test_feature_file_utils.py'
2022-12-09T22:13:41,933   adding 'tests/core_utils/test_file_utils.py'
2022-12-09T22:13:41,935   adding 'tests/core_utils/test_string_utils.py'
2022-12-09T22:13:41,941   adding 'tests/test_data/CBS.fa'
2022-12-09T22:13:41,944   adding 'tests/test_data/CBS.gff'
2022-12-09T22:13:41,952   adding 'tests/test_data/CBS_pEZY3.fa'
2022-12-09T22:13:42,188   adding 'tests/test_data/CBS_pEZY3.fa.1.bt2'
2022-12-09T22:13:42,275   adding 'tests/test_data/CBS_pEZY3.fa.2.bt2'
2022-12-09T22:13:42,277   adding 'tests/test_data/CBS_pEZY3.fa.3.bt2'
2022-12-09T22:13:42,280   adding 'tests/test_data/CBS_pEZY3.fa.4.bt2'
2022-12-09T22:13:42,283   adding 'tests/test_data/CBS_pEZY3.fa.fai'
2022-12-09T22:13:42,530   adding 'tests/test_data/CBS_pEZY3.fa.rev.1.bt2'
2022-12-09T22:13:42,617   adding 'tests/test_data/CBS_pEZY3.fa.rev.2.bt2'
2022-12-09T22:13:42,620   adding 'tests/test_data/CBS_pEZY3.gff'
2022-12-09T22:13:42,622   adding 'tests/test_data/CBS_pEZY3_primers.bed'
2022-12-09T22:13:42,624   adding 'tests/test_data/CBS_pEZY3_targets.bed'
2022-12-09T22:13:42,627   adding 'tests/test_data/CBS_sim.R1.fq.gz'
2022-12-09T22:13:42,630   adding 'tests/test_data/CBS_sim.R2.fq.gz'
2022-12-09T22:13:42,633   adding 'tests/test_data/CBS_sim.bam'
2022-12-09T22:13:42,635   adding 'tests/test_data/CBS_sim.bam.bai'
2022-12-09T22:13:42,638   adding 'tests/test_data/CBS_sim.vcf'
2022-12-09T22:13:42,641   adding 'tests/test_data/CBS_sim_primers.bed'
2022-12-09T22:13:45,890   adding 'tests/test_data/GRCh38.chr21.fa.gz'
2022-12-09T22:13:46,142   adding 'tests/test_data/PKNOX1.fa'
2022-12-09T22:13:46,145   adding 'tests/test_data/__init__.py'
2022-12-09T22:13:46,153   adding 'tests/test_data/appris_human_24_01_2019_selected.fa'
2022-12-09T22:13:46,156   adding 'tests/test_data/appris_human_24_01_2019_selected.fa.fai'
2022-12-09T22:13:46,159   adding 'tests/test_data/appris_human_v1_actual_regions_contigs.txt'
2022-12-09T22:13:46,162   adding 'tests/test_data/appris_human_v1_actual_regions_gene_ids.txt'
2022-12-09T22:13:46,164   adding 'tests/test_data/appris_human_v1_actual_regions_trx_ids.txt'
2022-12-09T22:13:46,169   adding 'tests/test_data/gencode.v29.annotation.gtf'
2022-12-09T22:13:46,173   adding 'tests/test_data/test_preprocess.bam'
2022-12-09T22:13:46,176   adding 'tests/test_data/test_preprocess.bam.bai'
2022-12-09T22:13:46,181   adding 'tests/test_data/test_preprocess.sam'
2022-12-09T22:13:46,184   adding 'tests/test_data/test_preprocess.sort.bam'
2022-12-09T22:13:46,187   adding 'tests/test_data/test_preprocess.sort.bam.bai'
2022-12-09T22:13:46,201   adding 'satmut_utils-1.0.2.dist-info/LICENSE.txt'
2022-12-09T22:13:46,205   adding 'satmut_utils-1.0.2.dist-info/METADATA'
2022-12-09T22:13:46,208   adding 'satmut_utils-1.0.2.dist-info/WHEEL'
2022-12-09T22:13:46,210   adding 'satmut_utils-1.0.2.dist-info/entry_points.txt'
2022-12-09T22:13:46,212   adding 'satmut_utils-1.0.2.dist-info/top_level.txt'
2022-12-09T22:13:46,215   adding 'satmut_utils-1.0.2.dist-info/RECORD'
2022-12-09T22:13:46,666   removing build/bdist.linux-armv7l/wheel
2022-12-09T22:13:46,953   Building wheel for satmut-utils (pyproject.toml): finished with status 'done'
2022-12-09T22:13:47,627   Created wheel for satmut-utils: filename=satmut_utils-1.0.2-py3-none-any.whl size=11988345 sha256=b3eaebca5f040ebf0c60f26e3b9ccef1935ce70852728f24b3a1623f4c791c20
2022-12-09T22:13:47,629   Stored in directory: /tmp/pip-ephem-wheel-cache-5ezhmbfd/wheels/81/47/07/d9024afa10fbf470509a31b336ab0255e1d790f057e7708750
2022-12-09T22:13:47,677 Successfully built satmut-utils
2022-12-09T22:13:48,596 Removed build tracker: '/tmp/pip-build-tracker-rjvxrsww'