2022-12-14T11:39:59,030 Created temporary directory: /tmp/pip-ephem-wheel-cache-cemw96d3 2022-12-14T11:39:59,035 Created temporary directory: /tmp/pip-build-tracker-lujtybnm 2022-12-14T11:39:59,036 Initialized build tracking at /tmp/pip-build-tracker-lujtybnm 2022-12-14T11:39:59,036 Created build tracker: /tmp/pip-build-tracker-lujtybnm 2022-12-14T11:39:59,036 Entered build tracker: /tmp/pip-build-tracker-lujtybnm 2022-12-14T11:39:59,038 Created temporary directory: /tmp/pip-wheel-8_ec7q5r 2022-12-14T11:39:59,045 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T11:39:59,051 Created temporary directory: /tmp/pip-ephem-wheel-cache-cdfmxtjk 2022-12-14T11:39:59,101 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T11:39:59,109 2 location(s) to search for versions of pyhmmer: 2022-12-14T11:39:59,109 * https://pypi.org/simple/pyhmmer/ 2022-12-14T11:39:59,109 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-14T11:39:59,110 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-14T11:39:59,111 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-14T11:39:59,114 Found index url https://pypi.org/simple 2022-12-14T11:39:59,441 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-14T11:39:59,707 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/24/b9adc93653b83e3aa333588f8fe80cf6a058b97497a1a722e7a2cf5bc5b3/pyhmmer-0.1.0a1-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,708 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/5a/594c4415860394f14b94137e10f3b6264fbd452a9ed00371fef870bdd68e/pyhmmer-0.1.0a1-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,708 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2f/fe/4cf2fc8c5eb288fc72cbbc151d6da1b6f6e73fcba66842ed40532069902d/pyhmmer-0.1.0a1-cp36-cp36m-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,709 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/c9/3f46d702c63e188539c28555af361e58ead4bff416799042c5ecf97805cb/pyhmmer-0.1.0a1-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,709 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/12/f5d1ef8114cc5e0ab890d562768e9a6eb253b3e3bf258f8105c1d1841c73/pyhmmer-0.1.0a1-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,710 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/b6/b92f44fcc712bc3dd621eccefe34d569a17f0ae73133f352a47fb2029c44/pyhmmer-0.1.0a1-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,711 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/b6/0ca49ee6803d761eefc93528e9e8106151e06acf77ba9f669275c01863ac/pyhmmer-0.1.0a1-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,711 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/0d/e2e21b3925af6887baf35a3e8993b5fe4863d93638138e7d5f236bcf2197/pyhmmer-0.1.0a1-cp38-cp38-macosx_10_13_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,712 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/3d/aac55b3f74ecd81ff3f619083c277ba40df45d8e6b8fc19d58eb74fab09b/pyhmmer-0.1.0a1-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,712 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/56/cc/11cb714fad98ed3c1689ce83a31a29d744ed34c822af3ae63b2450e6b159/pyhmmer-0.1.0a1-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,713 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/39/ca6e515c639a28632e52579a75aabe22d6bf2fe2a66cb2bd407fea81a1fe/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,713 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-14T11:39:59,714 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2022-12-14T11:39:59,715 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,715 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/a8/b31471655d0f09813748c9d8888587e3a1e1573f0c01c748676d03cc3c51/pyhmmer-0.1.0a2-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,716 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/1f/4b3aef73b2a9d4e07d56700a1a11794e6c92dd9018c1008b53e6c0e903ca/pyhmmer-0.1.0a2-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,716 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cf/83/a386d9e2350ec96fe9d0c6d8c274c72afda82745e5586926966b0c8e678f/pyhmmer-0.1.0a2-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,717 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d0/24/aaa2a74692ac30b32f7da206479021eb206ea6e7dbb7023ad8bae97db1a4/pyhmmer-0.1.0a2-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,717 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/4a/d1cba5443443544a77b200f47f2ba3ab679ef974bbf51dbfefde401902f0/pyhmmer-0.1.0a2-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,718 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d2/bf/a7d9c65a9c2660474ad72338ca47427f6f78e6ad378026edf2fdce3019f2/pyhmmer-0.1.0a2-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,719 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f7/10d886b6e03cdf16a6123dc48687cf1aaa025ac2b17d902bce75d4785ea4/pyhmmer-0.1.0a2-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,719 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/54/8b3c37d0732fedc623776c24f703a10b069436039abc2cbbed14eff2d665/pyhmmer-0.1.0a2-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,720 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ef/4d/86ff1e09e523b7d38d5d88d507f4131d4e20348855bb73603693355baf99/pyhmmer-0.1.0a2-cp38-cp38-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,720 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/d7/a10594b0c3bac79e2526c5659789b38cd98675cf8bc600c7c386482f40ad/pyhmmer-0.1.0a2-cp38-cp38-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,721 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/f8/e76e388294f53736440bf078f3e6d407625ab53077c8da0a80c776aaf5de/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,721 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/94/945c8e50db0e658ccbda8abb26a0becd29e414bbfc9a2aa0a07329ac86b4/pyhmmer-0.1.0a2-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,723 Found link https://files.pythonhosted.org/packages/a9/d8/7d1a3e189d29f5f57cfc2b5706e46d9c593228316d88d9791e4b6deaf818/pyhmmer-0.1.0a2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a2 2022-12-14T11:39:59,724 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/67/dd/ffe938b4db1f8230060a11a725500da00678d2431552685541e49f56a1cd/pyhmmer-0.1.0a3-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,724 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/0e/8634c98e9bb007edb4d9b0504cd2325f0db0303124c2285405f422d48d60/pyhmmer-0.1.0a3-cp35-cp35m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,725 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ac/a6/5d0240be2817e6b3c876493903fdf300a05a4d27ab4ce3e71a86bb4e6e47/pyhmmer-0.1.0a3-cp36-cp36m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,725 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,726 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,726 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,727 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/42/e3/1ae53fd316b2f4d952c9cc566068781a0e0bd676e741f328ae2c902d1490/pyhmmer-0.1.0a3-cp37-cp37m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,727 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/14/ee/8fa3f99cb062863c91e73654f21024373cae0187e5e3476275c1cf9d06f5/pyhmmer-0.1.0a3-cp37-cp37m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,728 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8c/67/4cb6f3ff89e47e060598f940d771799fdd7b1427544cd8da94ce895e9e4f/pyhmmer-0.1.0a3-cp38-cp38-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,728 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/8f/2a/abf43d38a2414b719e57bf5c5edb0803179f6d0e6a16fc2eed28cc77b6f5/pyhmmer-0.1.0a3-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,731 Found link https://files.pythonhosted.org/packages/54/29/75df6ece9030041c44fff57220bf48950d4c653ddca7e02a54d4d5fc21cc/pyhmmer-0.1.0a3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5), version: 0.1.0a3 2022-12-14T11:39:59,732 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/0b/15f39d875ef0cbadfd3b069916f632409989918429ec2604eec53cd7e448/pyhmmer-0.1.0a4-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-14T11:39:59,733 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/48/3c/336700ba033d737f5e839fd63e3f0aa4946a66870f7d54f3825ac34c1a95/pyhmmer-0.1.0a4-cp35-cp35m-manylinux2010_x86_64.whl 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https://files.pythonhosted.org/packages/1a/84/801ca5f828500d3825b066c8006d6b501d67d57d43f1c8d95c62fb72ed21/pyhmmer-0.3.0-pp36-pypy36_pp73-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,813 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/40/bd/c936e6aaa290135fadb7a240036567ea730c38646692ed5a161094168db7/pyhmmer-0.3.0-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,814 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/91/23/486eb994a82339f2dd5e15f734dfe622c7767d41b77b48dc638cc06192be/pyhmmer-0.3.0-pp37-pypy37_pp73-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,814 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/e9/35bc8f987689ae229a69375d849818e3e444970e5c0a506c2ae4a9b67b37/pyhmmer-0.3.0-pp37-pypy37_pp73-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,816 Found link https://files.pythonhosted.org/packages/30/13/7489e047ac14f57c8b24a4ae33feebb37a07b8c419bbd4fba9f6d4e701a6/pyhmmer-0.3.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.3.0 2022-12-14T11:39:59,816 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1b/fc/a6dcd6a8fd03829823c055a2ac2ee97c7d295f755d7ffcb5a1a9f8590396/pyhmmer-0.3.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,817 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/ba/3bcc8eddba05cf995bb5a718f904e08875159d430687c8a65f3cdcf1ea24/pyhmmer-0.3.1-cp36-cp36m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,817 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/5b/b92aa85314f24f4a19f66f18cfa3c6f3807594d7c3a23a8bfb5cfd92c282/pyhmmer-0.3.1-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,818 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/ec/8fc61155ad090117ec91574677ffe7be2540b8ac1eda05aac39b04b2baf7/pyhmmer-0.3.1-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,818 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6f/af/d847ec7dced017b36394aa1f1b1322f561b68831d0c82c5ed4198c10b4c6/pyhmmer-0.3.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,819 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b6/2f/ed4c88a0ff74bce8781ecc75dd6d34d6d6c4f7dbb6f8fc7538812fb1bcb8/pyhmmer-0.3.1-cp38-cp38-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,819 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/74/ba/2071d1002491f10b45fe057f8707b7f879546443a18ed0acb9a9486d3033/pyhmmer-0.3.1-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,820 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e3/1c/ac254f0a00b9739d4587df65f030cd15783f57feb996470cd4664e24e8b2/pyhmmer-0.3.1-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,821 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/fb/d87f9c26a4b58ea330e7936c4f59f0d8ecfdbc1e76aed60eaf5dd29f04ba/pyhmmer-0.3.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,821 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/57/15/82f4a4b0da12cdf0d044b6624cefa7cf563a60666a81196050b9f098df71/pyhmmer-0.3.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,822 Skipping link: No binaries 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pyhmmer: https://files.pythonhosted.org/packages/84/f5/5f83239790be66db9ea89781295020172d20ccc6d1262f4064dc2c1170cb/pyhmmer-0.4.1-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,837 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/35/55/bd514b80616381411b763ae1a275d384bb2261abc06f8b32e95dedf7aa37/pyhmmer-0.4.1-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,838 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/09/c5/f6909bd330534d7afba8a9a3c4618ec0bc31510ed253d98d18b38d886120/pyhmmer-0.4.1-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,838 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/94/8c/cdb2dc2c6e4427ad1c2e0f0a2975d909444e0d7774d45a09df331f5bef53/pyhmmer-0.4.1-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,840 Found link https://files.pythonhosted.org/packages/61/90/4a9c6bf89ac154d48db2cee3bc238d00395d80229e6ac24e6e3b576b5856/pyhmmer-0.4.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.1 2022-12-14T11:39:59,840 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/48/a36c888751b3dd9eb63c3c1c5ed163a6d154ae00f77d18a044e3fac082d0/pyhmmer-0.4.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,841 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cb/06/a2fc008cfdd553285325cf8373f3b6af85bb7cac0e294f45948bf1f282aa/pyhmmer-0.4.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,845 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/dc/0ed9ba672cc508bc15b4faf62a6444434e824ded77cfaf60662d90cb9601/pyhmmer-0.4.2-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,845 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9c/5e/212fe49995ccad358150012abf2da8ffbc25f024436b6fdcc89173e95b32/pyhmmer-0.4.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,846 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/9e/486d5da6d404842d00eabfbb1d7a25ffc0c49503dd7d267f1a6a701840e5/pyhmmer-0.4.2-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,846 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/88/b8bb0c20875f4638bb7d600c4c3dc65eb742b3a9833c730aa4915e94aa9a/pyhmmer-0.4.2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,848 Found link https://files.pythonhosted.org/packages/2f/93/fa15885ede25f87ac2fa5e2cef12831bb8747b7e8455982ca2942ba61c7b/pyhmmer-0.4.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.2 2022-12-14T11:39:59,848 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/da/5e42fc076686aab8588bafb9d3e5c97a6c8bb4b24060eb943836c303cf11/pyhmmer-0.4.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,849 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c9/50/caff34277134400d58687859f224f34e88a6aa7abc6b3371150c3997f7a1/pyhmmer-0.4.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,849 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/43/726fc37dd0ece9c81780c9e29b90be4493693f4c6e8edde68b3cf8189125/pyhmmer-0.4.3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,850 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bf/5f/6a88535a37b4de01584d62e008fb415adbe3f1440950dabba648943aa3c1/pyhmmer-0.4.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,851 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/6c/ec2ff99e8dc22520805ecf43ff22369a1ca0228cbd6fabfc3de0d7695481/pyhmmer-0.4.3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,851 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/9a/8df126ab5ccf2278e9b3414c26f53bf01b480164abcc11c9d2d56d9f67f4/pyhmmer-0.4.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,852 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ff/ba/e2347228e6bc83d22820f46bf33ed8558ce1128a60128edd2b9bd770078e/pyhmmer-0.4.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,854 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/9a/d5447b14a91a994bd2ec38a1a4880c29c93bce74e1aa7a328a794901a870/pyhmmer-0.4.3-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,854 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/eb/87/8074c4e8896b87ef161b2490f525315f70c4783e567cfc15679bdab1f059/pyhmmer-0.4.3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,856 Found link https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-12-14T11:39:59,856 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,857 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,857 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/36/11/9211817ba7eb6aa848578017977e3ea4d42a5f2ba76a5a2c0c71d5984d6a/pyhmmer-0.4.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,865 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a6/ee5ca7c4a3dcf82cf0f0dd5418c9fddad82149867352332d1feed8528cec/pyhmmer-0.4.5-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,866 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,867 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/ff/75b42f302eaf3eae6f87dae0023a54f5bb0c869613ce730bbb064afe57d8/pyhmmer-0.4.5-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,867 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/3c/c22f961311a96364b2fc84ebcd25ee75ce9111f27c9eaf48c1faeeafe8c7/pyhmmer-0.4.5-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,868 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/94/33f25a0d8f7761ac55acd5839c50078efe810b1e1ae0006113ca92c58d90/pyhmmer-0.4.5-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,868 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,869 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,869 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/11/86/9beee426a65a90eca53de4f3b0116b562bcbcf6eadf403ec83ae1b312a13/pyhmmer-0.4.5-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,870 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,875 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,875 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,876 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,878 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,878 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,880 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-14T11:39:59,880 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,881 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,881 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/fc/d9b9efcc7b21381a3fa0c4b83e083c9d0b406868846054b989d105c301c8/pyhmmer-0.4.7-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,882 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d8/6f/d70ebea12581688dbcf180b983186e3d3a8ad2325cc8691c837276bb3e67/pyhmmer-0.4.7-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,882 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/0c72fb32b8c75526ca61e74b835254a36a377ca9f7d53f33c607f7fb27a6/pyhmmer-0.4.7-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,883 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/c1/9f98c0bc9356578c3c4b14fd45a738acae7f7940a8ddc8342a8632734a3f/pyhmmer-0.4.7-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,884 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/1a/9605d23785ef8dbed1109f79c3797d2e417bda20e9207a4c8156609c808c/pyhmmer-0.4.7-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,884 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/28/1373677589c6dff86a9c29c5340ce8f17fea4163530ad63d8c2a4a54141f/pyhmmer-0.4.7-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,885 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,897 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,897 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,898 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,902 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,902 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,903 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-14T11:39:59,904 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,905 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,905 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,907 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,908 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,908 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,909 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,910 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,911 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-14T11:39:59,912 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,912 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,913 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/62/30/178be3d6c5dffe69cf886beff8302927e15d5ae2b92e9cef7f2f3fd0f43b/pyhmmer-0.4.11-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,915 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/9b/dc1fc0f379310382669aad49b6281cf3703f46662fc8d968b0b9ca0d7e8c/pyhmmer-0.4.11-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,915 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/54/4cba0bf00660fb32bc4e76006a76b20eaa4f694f49f37994995c6b0a4e1e/pyhmmer-0.4.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,916 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/90/24/136abcb4ad189a00cb41409d3887d892a8764231aa863c0e9d181952c989/pyhmmer-0.5.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,921 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/97/5a/9983f2ef20d457d0065c12d96103c9ff25581089fc29478f2d387ede8007/pyhmmer-0.5.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,921 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/18/55/361aa005346f7810a9d2daf9a25eb8bc4cc5352bd8ff0cb9e25caee1c3f4/pyhmmer-0.5.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,922 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/95/1c/5118252d96ee71ccad56ad081fcff29e7af31ea85b9e94b97911df3db5e3/pyhmmer-0.5.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,924 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b3/e2/9bdf705fc5813f94d82ab2dc71ee9f07724caa43629235a845bc6120b5cc/pyhmmer-0.5.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,924 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/76/20/0926ec071a4373f167f1c3265c1fe4d2ace1d71e85e6b37bd8a66dd31925/pyhmmer-0.5.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,925 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d1/ab/7448d935505b12a4a865f273b51c5e6a63ebacc6d3e98acb23b2133c1c8c/pyhmmer-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,926 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,926 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,927 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f6/53/3e5af9674d0cb1bbe737f2253f9ade02ccb8d84835568e6d76c2de00e3e1/pyhmmer-0.5.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,927 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/8e/3030e8640238fe995a33b34bbcf073e3c37859cb8cddab5badde1c9f698d/pyhmmer-0.5.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,928 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/37/f35d1b12f6758bcee4c013957c23e7719e1db5795f37bf64e4367b9992b8/pyhmmer-0.5.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,929 Found link https://files.pythonhosted.org/packages/d4/b4/860e63999b6827d880f4985cae22adc88e92ab2e2b06e954abb60be2d411/pyhmmer-0.5.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.5.0 2022-12-14T11:39:59,930 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/81/e44ca051aa0c14b3d371da0e11c53b8c97915c587a4d2d8958b761bca739/pyhmmer-0.6.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,930 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/24/ff258c00e8a3d8f9d0f3a34f32f3405bee99ef0339a6fc4d529b6970cc49/pyhmmer-0.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,931 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/98/b4/4fb7c0d1956678b92ba1deac8e1f26fe6391e362a88aac7a1c6743fa85e2/pyhmmer-0.6.0-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,931 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/aa/cb/e9b4113ab1049e1f13828043ee41dec823111fa0d1ba95b8ed17aa2479da/pyhmmer-0.6.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,932 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e2/16/950a9891b018accdc4cf2eac23cd4b2cc64eced8b6774a206ac9bdcfe79f/pyhmmer-0.6.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,932 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c6/37/9e560cd8eb371df3b31e9e60b9503b51155607f8ca1948cb4009a0c47519/pyhmmer-0.6.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/85/ec2e8f9b2eb9ac3c6a71f1a9cd29c43ffa2a0bdf23da96dcd6c8135b5a88/pyhmmer-0.6.0-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,933 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b4/6a/8a3467282158fac08ea0dc646378789abe5dfa9e77af5f25a1fb658e3a3e/pyhmmer-0.6.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,934 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e1/24/e5cba7b51dc391c8bc45dd7f98e61804088f8cc35346b362dedc94fae471/pyhmmer-0.6.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,935 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/ad/68a14e424200099462bd97c58fefe3b428a6522ae11b2e2b195bbbd6d15a/pyhmmer-0.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,935 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,936 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/e9/3a1f5a5aa46b482a3bca632fff9cb173c91ba5f02a96a3f5c0d730660519/pyhmmer-0.6.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,936 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7b/72/119583107572a60f86e0f8578a7bf5d03928eeb3107d3e469336c5c41245/pyhmmer-0.6.0-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,937 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/8d/2743d1944b793b1182955de2143776ec786c239e6c69fb8da18fb4db17ed/pyhmmer-0.6.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,937 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5b/e5/7dae65e0e3f3724535d49307db46975b4eb1bc62cc77a1b2dd26ddc308a9/pyhmmer-0.6.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,938 Found link https://files.pythonhosted.org/packages/66/34/775e5243113c2d97ae0ed9e6a39f145549bf85c6215840b728fa9a3f6b89/pyhmmer-0.6.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.0 2022-12-14T11:39:59,939 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/02/87/0d2511754cabbe05b89d15eea01a63f886dcf4697934c121df79b47a281a/pyhmmer-0.6.1-cp310-cp310-macosx_10_15_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/89/73/9dcef15dba0a3d194c2efd78a64478d9fe368745a5f76b4d7c321da3929f/pyhmmer-0.6.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,940 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/34/aaa3d15ef7bd33ef7e8eb8a92ac49e975355f708448e88fe4af98909e4fc/pyhmmer-0.6.1-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,941 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/11/2e/dfd760137a8b144e2341a07ca54ce170a83bd4982641ea31ee90fdfd0837/pyhmmer-0.6.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,941 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/1a/58/bd0cf943e8530a77288c09068655fc165b0c0b8e92c13a504236cef318f4/pyhmmer-0.6.2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,949 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/7e/0ae123e0917f504cd5a286eef569469a4da0bdcd9c8dd2472c95b9cd52d0/pyhmmer-0.6.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,950 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a8/f9/72faeef1934a86623f8720070d2bfcd4518492e95d6afedf7cb093f06b9c/pyhmmer-0.6.2-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,950 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,952 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,953 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,954 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,954 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,955 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,955 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,956 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,956 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,958 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-14T11:39:59,958 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,959 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,959 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,962 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,962 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,963 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,963 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,964 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,964 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,965 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,965 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,966 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,967 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-12-14T11:39:59,968 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,968 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,969 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,970 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,971 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,971 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/6c/66722b1c98eb72b6f2264cda1392461ba1a7beefcca6e6d56edb7a58baab/pyhmmer-0.7.0rc1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,972 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e7/66/7146d3ffbb6917adcb31600e6b5037ecaafdf2198efaabe8b26519d3aad1/pyhmmer-0.7.0rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,978 Found link https://files.pythonhosted.org/packages/07/f9/aa30f9a062a03215706fd914a193d012c869409f0883406963f5097ec7f1/pyhmmer-0.7.0rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc1 2022-12-14T11:39:59,978 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/64/27ba87f3a6b5bd028bde8e63579e4fc7729abb207b6e9e700cbf51dc7b30/pyhmmer-0.7.0rc2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,979 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,983 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,983 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,984 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,988 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2022-12-14T11:39:59,989 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,990 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,992 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,992 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,993 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/99/f426e48fd4c851ff69b0d669d9c7f782c7c8c0a4b753dd93d7dcdc18a91f/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:39:59,999 Found link https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc3 2022-12-14T11:40:00,000 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/8c/41e7a4d44918a08c02a8b529d11d45180fc640cf2d21cc83427f0e5cfe06/pyhmmer-0.7.0rc4-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,000 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,010 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2022-12-14T11:40:00,010 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,011 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3c/74/ee460564fd2c0d9404e75649c4a5e476d962c37b018de89592f7960d1325/pyhmmer-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,011 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/36/e9/3d4b55e50c0815ec25f18e367982e588bc84033e6b8d5417671210214dc5/pyhmmer-0.7.0-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,012 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7d/64/775e2adae614da4f3481e035153058f95338913b433d82a2b295e672c753/pyhmmer-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,012 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,013 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,014 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,014 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/cd/2ae79c367d9ac8df13d62cd7a7c33f8ae37c4b7084886825e616862fc7c3/pyhmmer-0.7.0-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,015 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/12/df/5d0e476aab5fa0fa99313e9f2c1d641690381724e8d691a4fe42b7734b6e/pyhmmer-0.7.0-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,015 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f7/af/dc4680fa932f2bf899f08438eb08bd271f2602454a0a0a8a2fede8bd2abe/pyhmmer-0.7.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,016 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/51/03/a89c205cef3d63d140049a204977c5903adbcc2fffcd37f903a155fa5cc8/pyhmmer-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,016 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/81/47/eeb9204615d3acf39fe7ba1f5d0209d263c747eac405ea97e3ac6428c7a9/pyhmmer-0.7.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,017 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/c8/273b776dc57d54b80741592ca6aee62fb31982f4ead0bbc1510a3d89f95e/pyhmmer-0.7.0-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,017 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/dd/15/3005213eddd959f34442df93ebc4e44c28bb223ad9a7fa407ecc8b788e92/pyhmmer-0.7.0-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,018 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/59/e5/abea9b8c2217a67965d536d91263e89b9e1f896b54608a9e1354e6b4f38f/pyhmmer-0.7.0-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,018 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9e/17/03f003657c307cd45ab90e60c6ac65a72b895610952fcc41bcbb16c20013/pyhmmer-0.7.0-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,019 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,020 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2022-12-14T11:40:00,021 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/93/13708d5362f3eeeae6bb9dc49dd033e78b2f36556581dff3a1a4c8944b9e/pyhmmer-0.7.1rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,021 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/0d/38ef5d23d1a5cb2a9fa802be2e3e5515584db19a9e4b571fd287c7ea3bf5/pyhmmer-0.7.1rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,022 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/de/81f869083b51909d42e48df30c28685c811f59c21f8ca42a4bc565ede604/pyhmmer-0.7.1rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,023 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/e8/add2c7bb63616995f729fb215fad8dc578ac8de57e469830f42878e52a32/pyhmmer-0.7.1rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,023 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,024 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,024 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/08/ef/d20b8278dbe3e1af0e5b3bced7315c98f4a53f84f42bbcd4c1ab4cfbaef3/pyhmmer-0.7.1rc1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,025 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/24/b5fd39220f4a8837de8dd1608eb53b724b123d57901c25517ea6f51f0924/pyhmmer-0.7.1rc1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,025 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/88/677dff90707b1581bf59d40a2afd52173654e6ac159170a80ed9622aa96f/pyhmmer-0.7.1rc1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,026 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ab/95/0c6493ed1170c5cf11fcfbcbcb0272117d9b7d9c6810604ee0b54d809d19/pyhmmer-0.7.1rc1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,026 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/16/b6/ffe3c7a7b6b4812c633a1ec63624e8c684c2f9ae9ec3aa2410adaf6d8a35/pyhmmer-0.7.1rc1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/3c/4417c019a459d64aeb93b5583c5318d5dbbcceca09122c7b2dd70ecfea9f/pyhmmer-0.7.1rc1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,027 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/21/17/c60036e61557900aacc140b1203dd88269f9f4c74619b1d93338cbb0f3aa/pyhmmer-0.7.1rc1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/17/be/1f0953d157c07307f3223edc3f7cb55a2f56965a9f7c864f0bf8e0dbff95/pyhmmer-0.7.1rc1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,028 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/da/d6/3f260928c49eb449d5917cb1820f54826544cb5d5073591b6595b20926bc/pyhmmer-0.7.1rc1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,029 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/01/af/43f2bf25a61767df0fac21c668656715d45ce051363d1ee7f897a11baad9/pyhmmer-0.7.1rc1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,029 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8d/5b/99159669ed9c78d16ad48eb9cfe9125b1de55b89c6896113db6d7db01281/pyhmmer-0.7.1rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-14T11:40:00,031 Found link https://files.pythonhosted.org/packages/ba/63/dbf48469522286800379be94c0aac9ca387e8b55dd2aa3631d25aa6b3670/pyhmmer-0.7.1rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1rc1 2022-12-14T11:40:00,032 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-14T11:40:00,032 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-14T11:40:00,035 Found index url https://www.piwheels.org/simple 2022-12-14T11:40:00,259 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-14T11:40:00,261 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-14T11:40:00,262 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-14T11:40:00,309 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-14T11:40:00,339 Collecting pyhmmer==0.7.1rc1 2022-12-14T11:40:00,344 Created temporary directory: /tmp/pip-unpack-529m6gec 2022-12-14T11:40:00,908 Downloading pyhmmer-0.7.1rc1.tar.gz (11.0 MB) 2022-12-14T11:40:12,461 Added pyhmmer==0.7.1rc1 from https://files.pythonhosted.org/packages/ba/63/dbf48469522286800379be94c0aac9ca387e8b55dd2aa3631d25aa6b3670/pyhmmer-0.7.1rc1.tar.gz to build tracker '/tmp/pip-build-tracker-lujtybnm' 2022-12-14T11:40:12,471 Created temporary directory: /tmp/pip-build-env-_lqu4dhe 2022-12-14T11:40:12,482 Installing build dependencies: started 2022-12-14T11:40:12,485 Running command pip subprocess to install build dependencies 2022-12-14T11:40:15,159 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-14T11:40:15,943 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T11:40:15,996 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T11:40:21,939 Collecting setuptools>=46.4 2022-12-14T11:40:22,259 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-14T11:40:25,422 Collecting cython~=0.29.16 2022-12-14T11:40:25,938 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-14T11:40:31,663 Installing collected packages: setuptools, cython 2022-12-14T11:40:41,752 Creating /tmp/pip-build-env-_lqu4dhe/overlay/bin 2022-12-14T11:40:41,756 changing mode of /tmp/pip-build-env-_lqu4dhe/overlay/bin/cygdb to 755 2022-12-14T11:40:41,760 changing mode of /tmp/pip-build-env-_lqu4dhe/overlay/bin/cython to 755 2022-12-14T11:40:41,765 changing mode of /tmp/pip-build-env-_lqu4dhe/overlay/bin/cythonize to 755 2022-12-14T11:40:41,810 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-14T11:40:41,846 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-14T11:40:41,846 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-14T11:40:42,342 Installing build dependencies: finished with status 'done' 2022-12-14T11:40:42,354 Getting requirements to build wheel: started 2022-12-14T11:40:42,356 Running command Getting requirements to build wheel 2022-12-14T11:40:45,062 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-14T11:40:45,288 Getting requirements to build wheel: finished with status 'done' 2022-12-14T11:40:45,324 Installing backend dependencies: started 2022-12-14T11:40:45,326 Running command pip subprocess to install backend dependencies 2022-12-14T11:40:48,165 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-14T11:40:48,957 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T11:40:49,016 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T11:40:51,148 Collecting wheel 2022-12-14T11:40:52,730 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-14T11:40:57,470 Installing collected packages: wheel 2022-12-14T11:40:57,741 Creating /tmp/pip-build-env-_lqu4dhe/normal/bin 2022-12-14T11:40:57,745 changing mode of /tmp/pip-build-env-_lqu4dhe/normal/bin/wheel to 755 2022-12-14T11:40:57,771 Successfully installed wheel-0.38.4 2022-12-14T11:40:57,800 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-14T11:40:57,801 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-14T11:40:58,158 Installing backend dependencies: finished with status 'done' 2022-12-14T11:40:58,163 Created temporary directory: /tmp/pip-modern-metadata-he3cs5c_ 2022-12-14T11:40:58,170 Preparing metadata (pyproject.toml): started 2022-12-14T11:40:58,172 Running command Preparing metadata (pyproject.toml) 2022-12-14T11:41:00,804 running dist_info 2022-12-14T11:41:00,837 creating /tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info 2022-12-14T11:41:00,847 writing /tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/PKG-INFO 2022-12-14T11:41:00,854 writing dependency_links to /tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/dependency_links.txt 2022-12-14T11:41:00,858 writing requirements to /tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/requires.txt 2022-12-14T11:41:00,861 writing top-level names to /tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/top_level.txt 2022-12-14T11:41:00,863 writing manifest file '/tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/SOURCES.txt' 2022-12-14T11:41:00,974 reading manifest file '/tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/SOURCES.txt' 2022-12-14T11:41:00,981 reading manifest template 'MANIFEST.in' 2022-12-14T11:41:02,147 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-14T11:41:02,148 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-14T11:41:02,152 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-14T11:41:02,156 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-14T11:41:02,159 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-14T11:41:02,162 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-14T11:41:02,166 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-14T11:41:02,169 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-14T11:41:02,172 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-14T11:41:02,176 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-14T11:41:02,179 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-14T11:41:02,182 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-14T11:41:02,186 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-14T11:41:02,189 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-14T11:41:02,192 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-14T11:41:02,193 adding license file 'COPYING' 2022-12-14T11:41:02,265 writing manifest file '/tmp/pip-modern-metadata-he3cs5c_/pyhmmer.egg-info/SOURCES.txt' 2022-12-14T11:41:02,269 creating '/tmp/pip-modern-metadata-he3cs5c_/pyhmmer-0.7.1rc1.dist-info' 2022-12-14T11:41:02,662 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-14T11:41:02,679 Source in /tmp/pip-wheel-8_ec7q5r/pyhmmer_1fe513cf4b514accaad9bc287214de41 has version 0.7.1rc1, which satisfies requirement pyhmmer==0.7.1rc1 from https://files.pythonhosted.org/packages/ba/63/dbf48469522286800379be94c0aac9ca387e8b55dd2aa3631d25aa6b3670/pyhmmer-0.7.1rc1.tar.gz 2022-12-14T11:41:02,681 Removed pyhmmer==0.7.1rc1 from https://files.pythonhosted.org/packages/ba/63/dbf48469522286800379be94c0aac9ca387e8b55dd2aa3631d25aa6b3670/pyhmmer-0.7.1rc1.tar.gz from build tracker '/tmp/pip-build-tracker-lujtybnm' 2022-12-14T11:41:02,698 Created temporary directory: /tmp/pip-unpack-9093jszw 2022-12-14T11:41:02,699 Building wheels for collected packages: pyhmmer 2022-12-14T11:41:02,708 Created temporary directory: /tmp/pip-wheel-1ied9a2g 2022-12-14T11:41:02,708 Destination directory: /tmp/pip-wheel-1ied9a2g 2022-12-14T11:41:02,718 Building wheel for pyhmmer (pyproject.toml): started 2022-12-14T11:41:02,720 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-14T11:41:05,326 running bdist_wheel 2022-12-14T11:41:05,358 running build 2022-12-14T11:41:05,358 running build_py 2022-12-14T11:41:05,376 creating build 2022-12-14T11:41:05,377 creating build/lib.linux-armv7l-cpython-37 2022-12-14T11:41:05,379 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:05,381 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:05,385 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:05,392 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:05,397 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,400 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,404 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,408 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,412 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,418 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:05,425 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,428 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,432 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,438 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,442 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,447 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,452 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,457 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,461 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,467 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,471 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,476 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,481 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,485 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-14T11:41:05,491 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,494 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,498 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,503 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,507 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,511 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,516 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,521 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,524 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,529 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,533 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,538 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,542 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,547 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-14T11:41:05,549 running egg_info 2022-12-14T11:41:05,590 writing pyhmmer.egg-info/PKG-INFO 2022-12-14T11:41:05,596 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-14T11:41:05,600 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-14T11:41:05,602 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-14T11:41:05,639 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-14T11:41:05,683 reading manifest template 'MANIFEST.in' 2022-12-14T11:41:06,870 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-14T11:41:06,871 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-14T11:41:06,878 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-14T11:41:06,884 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-14T11:41:06,890 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-14T11:41:06,895 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-14T11:41:06,901 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-14T11:41:06,907 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-14T11:41:06,912 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-14T11:41:06,918 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-14T11:41:06,923 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-14T11:41:06,929 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-14T11:41:06,935 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-14T11:41:06,940 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-14T11:41:06,946 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-14T11:41:06,947 adding license file 'COPYING' 2022-12-14T11:41:07,047 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-14T11:41:07,077 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,077 !! 2022-12-14T11:41:07,078 ############################ 2022-12-14T11:41:07,078 # Package would be ignored # 2022-12-14T11:41:07,079 ############################ 2022-12-14T11:41:07,079 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-14T11:41:07,079 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,080 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-14T11:41:07,080 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,080 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,081 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-14T11:41:07,081 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,082 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,082 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,083 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,083 documentation page. 2022-12-14T11:41:07,084 !! 2022-12-14T11:41:07,084 check.warn(importable) 2022-12-14T11:41:07,085 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,085 !! 2022-12-14T11:41:07,086 ############################ 2022-12-14T11:41:07,086 # Package would be ignored # 2022-12-14T11:41:07,087 ############################ 2022-12-14T11:41:07,087 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-14T11:41:07,087 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,088 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-14T11:41:07,088 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,088 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,089 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-14T11:41:07,089 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,090 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,090 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,091 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,091 documentation page. 2022-12-14T11:41:07,092 !! 2022-12-14T11:41:07,092 check.warn(importable) 2022-12-14T11:41:07,093 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,093 !! 2022-12-14T11:41:07,094 ############################ 2022-12-14T11:41:07,094 # Package would be ignored # 2022-12-14T11:41:07,094 ############################ 2022-12-14T11:41:07,095 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-14T11:41:07,095 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,096 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-14T11:41:07,096 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,096 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,097 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-14T11:41:07,097 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,097 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,098 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,098 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,099 documentation page. 2022-12-14T11:41:07,099 !! 2022-12-14T11:41:07,100 check.warn(importable) 2022-12-14T11:41:07,100 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,101 !! 2022-12-14T11:41:07,101 ############################ 2022-12-14T11:41:07,102 # Package would be ignored # 2022-12-14T11:41:07,102 ############################ 2022-12-14T11:41:07,102 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-14T11:41:07,103 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,103 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-14T11:41:07,104 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,104 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,104 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-14T11:41:07,105 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,105 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,105 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,106 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,106 documentation page. 2022-12-14T11:41:07,107 !! 2022-12-14T11:41:07,108 check.warn(importable) 2022-12-14T11:41:07,108 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,108 !! 2022-12-14T11:41:07,109 ############################ 2022-12-14T11:41:07,109 # Package would be ignored # 2022-12-14T11:41:07,110 ############################ 2022-12-14T11:41:07,110 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-14T11:41:07,110 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,111 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-14T11:41:07,111 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,111 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,112 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-14T11:41:07,112 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,113 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,113 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,114 documentation page. 2022-12-14T11:41:07,114 !! 2022-12-14T11:41:07,115 check.warn(importable) 2022-12-14T11:41:07,115 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,116 !! 2022-12-14T11:41:07,116 ############################ 2022-12-14T11:41:07,117 # Package would be ignored # 2022-12-14T11:41:07,117 ############################ 2022-12-14T11:41:07,117 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-14T11:41:07,118 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,118 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-14T11:41:07,118 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,119 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,119 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-14T11:41:07,120 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,120 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,120 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,121 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,121 documentation page. 2022-12-14T11:41:07,122 !! 2022-12-14T11:41:07,122 check.warn(importable) 2022-12-14T11:41:07,123 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,123 !! 2022-12-14T11:41:07,124 ############################ 2022-12-14T11:41:07,124 # Package would be ignored # 2022-12-14T11:41:07,124 ############################ 2022-12-14T11:41:07,125 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-14T11:41:07,125 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,126 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-14T11:41:07,126 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,126 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,127 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-14T11:41:07,127 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,128 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,128 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,129 documentation page. 2022-12-14T11:41:07,130 !! 2022-12-14T11:41:07,130 check.warn(importable) 2022-12-14T11:41:07,130 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-14T11:41:07,131 !! 2022-12-14T11:41:07,132 ############################ 2022-12-14T11:41:07,132 # Package would be ignored # 2022-12-14T11:41:07,132 ############################ 2022-12-14T11:41:07,133 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-14T11:41:07,133 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:41:07,134 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-14T11:41:07,134 because it may contain data files, but this behavior is likely to change 2022-12-14T11:41:07,134 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:41:07,135 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-14T11:41:07,135 the `packages` configuration field or the proper discovery methods 2022-12-14T11:41:07,135 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:41:07,136 instead of `find_packages(...)`/`find:`). 2022-12-14T11:41:07,136 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:41:07,136 documentation page. 2022-12-14T11:41:07,137 !! 2022-12-14T11:41:07,138 check.warn(importable) 2022-12-14T11:41:07,158 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,162 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,167 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,174 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,179 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,186 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,203 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,207 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,212 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,216 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,222 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,231 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,253 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-14T11:41:07,256 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-14T11:41:07,258 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-14T11:41:07,262 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-14T11:41:07,267 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,269 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,273 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,277 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,281 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,285 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,289 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,293 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-14T11:41:07,297 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-14T11:41:07,301 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-14T11:41:07,303 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-14T11:41:07,307 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-14T11:41:07,309 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-14T11:41:07,313 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-14T11:41:07,315 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-14T11:41:07,322 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-14T11:41:07,329 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-14T11:41:07,336 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-14T11:41:07,528 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,529 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,539 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,544 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,548 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,555 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,562 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,573 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,579 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,584 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,592 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,600 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,612 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,618 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,622 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,629 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:07,637 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:08,076 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:08,137 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:08,142 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:08,271 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-14T11:41:08,422 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,423 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,437 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,447 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,458 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,469 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,485 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,513 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-14T11:41:08,749 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-14T11:41:08,751 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-14T11:41:08,761 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-14T11:41:08,772 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-14T11:41:08,782 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-14T11:41:09,022 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-14T11:41:09,024 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-14T11:41:09,029 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-14T11:41:09,034 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-14T11:41:09,039 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-14T11:41:09,040 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-14T11:41:09,046 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-14T11:41:09,051 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-14T11:41:09,056 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-14T11:41:09,061 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,062 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,117 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,132 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,333 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,344 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,349 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,354 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-14T11:41:09,358 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,360 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,364 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,369 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,374 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,378 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,381 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,386 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,393 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,398 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-14T11:41:09,412 running build_clib 2022-12-14T11:41:09,430 creating build/temp.linux-armv7l-cpython-37 2022-12-14T11:41:09,431 generating "divsufsort.h" for divsufsort library 2022-12-14T11:41:09,432 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-14T11:41:09,436 generating "esl_config.h" for easel library 2022-12-14T11:41:09,439 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2022-12-14T11:41:09,657 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2022-12-14T11:41:09,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2022-12-14T11:41:10,069 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2022-12-14T11:41:10,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2022-12-14T11:41:10,439 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2022-12-14T11:41:10,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2022-12-14T11:41:10,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2022-12-14T11:41:10,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2022-12-14T11:41:11,202 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2022-12-14T11:41:11,383 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2022-12-14T11:41:11,809 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2022-12-14T11:41:12,068 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2022-12-14T11:41:12,298 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2022-12-14T11:41:12,547 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2022-12-14T11:41:13,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2022-12-14T11:41:13,448 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2022-12-14T11:41:14,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2022-12-14T11:41:14,305 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2022-12-14T11:41:14,939 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2022-12-14T11:41:15,190 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2022-12-14T11:41:15,809 /usr/bin/ld: /tmp/ccCC31OA.ltrans0.ltrans.o: in function `main': 2022-12-14T11:41:15,809 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2022-12-14T11:41:15,810 collect2: error: ld returned 1 exit status 2022-12-14T11:41:15,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2022-12-14T11:41:16,056 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2022-12-14T11:41:16,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2022-12-14T11:41:16,951 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2022-12-14T11:41:17,603 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2022-12-14T11:41:17,801 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2022-12-14T11:41:18,413 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2022-12-14T11:41:18,623 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2022-12-14T11:41:19,266 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2022-12-14T11:41:19,489 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2022-12-14T11:41:20,110 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2022-12-14T11:41:20,359 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2022-12-14T11:41:20,984 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2022-12-14T11:41:21,198 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2022-12-14T11:41:21,823 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2022-12-14T11:41:22,059 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2022-12-14T11:41:22,683 generating "p7_config.h" for hmmer library 2022-12-14T11:41:22,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2022-12-14T11:41:22,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2022-12-14T11:41:23,050 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2022-12-14T11:41:23,229 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2022-12-14T11:41:23,423 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2022-12-14T11:41:23,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2022-12-14T11:41:23,859 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2022-12-14T11:41:24,102 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2022-12-14T11:41:24,286 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2022-12-14T11:41:24,535 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2022-12-14T11:41:25,170 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2022-12-14T11:41:25,400 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2022-12-14T11:41:26,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2022-12-14T11:41:26,281 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2022-12-14T11:41:26,908 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2022-12-14T11:41:27,108 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2022-12-14T11:41:27,740 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2022-12-14T11:41:27,948 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2022-12-14T11:41:28,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2022-12-14T11:41:28,771 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2022-12-14T11:41:29,390 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2022-12-14T11:41:29,613 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2022-12-14T11:41:30,239 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2022-12-14T11:41:30,489 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2022-12-14T11:41:31,129 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2022-12-14T11:41:31,351 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2022-12-14T11:41:31,983 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2022-12-14T11:41:32,209 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2022-12-14T11:41:32,835 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2022-12-14T11:41:33,049 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2022-12-14T11:41:33,690 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2022-12-14T11:41:33,915 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2022-12-14T11:41:34,548 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2022-12-14T11:41:34,772 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2022-12-14T11:41:35,411 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2022-12-14T11:41:35,672 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2022-12-14T11:41:36,302 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-14T11:41:36,327 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-14T11:41:36,352 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-14T11:41:36,422 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-14T11:41:36,423 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-14T11:41:36,424 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-14T11:41:36,426 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-14T11:41:36,428 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-14T11:41:45,447 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-14T11:41:45,511 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_exponential.c, vendor/easel/esl_red_black.c, vendor/easel/esl_random.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_normal.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_msafile.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_mem.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_json.c, vendor/easel/esl_avx512.c, vendor/easel/esl_arr2.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gencode.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sse.c, vendor/easel/esl_wuss.c, vendor/easel/esl_histogram.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_weibull.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_ssi.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_neon.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sq.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_getopts.c, vendor/easel/esl_cluster.c, vendor/easel/esl_mpi.c, vendor/easel/esl_distance.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msa.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_swat.c, vendor/easel/esl_graph.c, vendor/easel/esl_alloc.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_hmm.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_varint.c, vendor/easel/easel.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_tree.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_gev.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_fileparser.c, vendor/easel/interface_lapack.c, vendor/easel/esl_vmx.c, vendor/easel/esl_arr3.c, vendor/easel/esl_threads.c, vendor/easel/esl_heap.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_rand64.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_stack.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-14T11:41:45,519 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-14T11:41:45,521 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-14T11:41:45,523 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-14T11:41:45,524 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-14T11:41:45,524 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-14T11:41:45,525 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-14T11:41:45,525 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-14T11:41:45,525 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-14T11:41:45,527 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-14T11:41:45,528 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-14T11:41:45,529 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-14T11:41:45,567 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-14T11:41:46,520 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-14T11:41:46,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-14T11:41:46,921 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-14T11:41:46,922 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-14T11:41:46,922 for (i = 0; i < a; i++) 2022-12-14T11:41:46,923 ^ 2022-12-14T11:41:47,356 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-14T11:41:47,358 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-14T11:41:48,485 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-14T11:41:48,487 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-14T11:41:48,568 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-14T11:41:48,570 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-14T11:41:48,629 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-14T11:41:48,631 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-14T11:41:49,364 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-14T11:41:49,366 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-14T11:41:49,917 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-14T11:41:49,919 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-14T11:41:50,207 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-14T11:41:50,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-14T11:41:50,691 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-14T11:41:50,693 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-14T11:41:51,176 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-14T11:41:51,177 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-14T11:41:51,571 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-14T11:41:51,572 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-14T11:41:51,855 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-14T11:41:51,856 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-14T11:41:52,434 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-14T11:41:52,436 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-14T11:41:52,494 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-14T11:41:52,496 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-14T11:41:52,563 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-14T11:41:52,565 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-14T11:41:53,115 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-14T11:41:53,117 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-14T11:41:53,147 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-14T11:41:53,149 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-14T11:41:54,178 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-14T11:41:54,180 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:41:54,180 int flags; 2022-12-14T11:41:54,181 ^~~~~ 2022-12-14T11:41:54,918 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-14T11:41:54,919 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:41:54,920 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-14T11:41:54,920 ^ 2022-12-14T11:41:54,921 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-14T11:41:54,921 char *p; 2022-12-14T11:41:54,922 ^ 2022-12-14T11:41:55,387 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-14T11:41:55,389 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-14T11:41:55,736 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-14T11:41:55,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-14T11:41:56,469 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-14T11:41:56,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-14T11:41:57,573 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-14T11:41:57,575 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-14T11:41:57,766 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-14T11:41:57,768 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-14T11:41:57,836 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-14T11:41:57,837 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-14T11:41:58,550 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-14T11:41:58,550 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:41:58,551 return status; 2022-12-14T11:41:58,551 ^~~~~~ 2022-12-14T11:41:59,287 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-14T11:41:59,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-14T11:41:59,512 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-14T11:41:59,513 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-14T11:41:59,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-14T11:41:59,516 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-14T11:41:59,815 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-14T11:41:59,818 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-14T11:42:00,206 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-14T11:42:00,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-14T11:42:00,282 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-14T11:42:00,283 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-14T11:42:00,285 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:00,286 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:00,286 ^ 2022-12-14T11:42:00,287 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:00,287 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-14T11:42:00,288 ^~~~~~~ 2022-12-14T11:42:00,289 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:00,290 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:00,290 ^~~ 2022-12-14T11:42:00,290 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:00,291 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-14T11:42:00,291 ^~~~~~~ 2022-12-14T11:42:00,295 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:00,296 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:00,296 ^ 2022-12-14T11:42:00,297 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:00,298 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-14T11:42:00,298 ^~~~~~~ 2022-12-14T11:42:00,300 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:00,300 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:00,301 ^~~ 2022-12-14T11:42:00,301 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:00,302 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-14T11:42:00,302 ^~~~~~~ 2022-12-14T11:42:00,588 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-14T11:42:00,589 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:00,589 if (rank > h->n) 2022-12-14T11:42:00,590 ^ 2022-12-14T11:42:00,780 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-14T11:42:00,782 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-14T11:42:01,272 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-14T11:42:01,274 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-14T11:42:02,307 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-14T11:42:02,309 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-14T11:42:03,693 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-14T11:42:03,695 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-14T11:42:04,093 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-14T11:42:04,094 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:04,094 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-14T11:42:04,095 ^~ 2022-12-14T11:42:04,348 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-14T11:42:04,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-14T11:42:05,130 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-14T11:42:05,132 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-14T11:42:05,489 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-14T11:42:05,489 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,490 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-14T11:42:05,491 ^~ 2022-12-14T11:42:05,516 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-14T11:42:05,517 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,517 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-14T11:42:05,518 ^ 2022-12-14T11:42:05,526 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-14T11:42:05,527 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,527 if (n > ns->plen) ns->plen = n; 2022-12-14T11:42:05,528 ^ 2022-12-14T11:42:05,531 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,531 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-14T11:42:05,532 ^ 2022-12-14T11:42:05,533 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-14T11:42:05,533 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,534 if (n > ns->slen) ns->slen = n; 2022-12-14T11:42:05,535 ^ 2022-12-14T11:42:05,537 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,538 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-14T11:42:05,539 ^ 2022-12-14T11:42:05,560 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-14T11:42:05,561 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,562 for (i = 0; i < ns->nprimary; i++) 2022-12-14T11:42:05,562 ^ 2022-12-14T11:42:05,567 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,569 for (i = 0; i < ns->nprimary; i++) 2022-12-14T11:42:05,569 ^ 2022-12-14T11:42:05,572 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,573 for (i = 0; i < ns->nsecondary; i++) 2022-12-14T11:42:05,574 ^ 2022-12-14T11:42:05,576 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,576 for (i = 0; i < ns->nsecondary; i++) 2022-12-14T11:42:05,577 ^ 2022-12-14T11:42:05,595 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-14T11:42:05,596 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,596 for (i = 0; i < ns->nprimary; i++) 2022-12-14T11:42:05,597 ^ 2022-12-14T11:42:05,598 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,598 for (i = 0; i < ns->nsecondary; i++) 2022-12-14T11:42:05,599 ^ 2022-12-14T11:42:05,652 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-14T11:42:05,653 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,653 for (i = 0; i < ns->nprimary; i++) { 2022-12-14T11:42:05,654 ^ 2022-12-14T11:42:05,654 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,654 for (i = 0; i < ns->nsecondary; i++) 2022-12-14T11:42:05,655 ^ 2022-12-14T11:42:05,655 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,655 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-14T11:42:05,656 ^ 2022-12-14T11:42:05,659 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,659 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-14T11:42:05,660 ^ 2022-12-14T11:42:05,660 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:05,661 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-14T11:42:05,661 ^ 2022-12-14T11:42:05,715 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-14T11:42:05,717 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-14T11:42:05,960 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-14T11:42:05,962 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-14T11:42:06,187 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-14T11:42:06,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-14T11:42:06,399 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-14T11:42:06,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-14T11:42:06,582 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-14T11:42:06,583 static double stopwatch_getRealTime(void); 2022-12-14T11:42:06,583 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:06,686 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-14T11:42:06,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-14T11:42:07,042 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-14T11:42:07,044 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-14T11:42:07,423 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-14T11:42:07,424 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,425 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-14T11:42:07,425 ^~ 2022-12-14T11:42:07,426 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,426 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-14T11:42:07,427 ^~ 2022-12-14T11:42:07,428 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,428 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-14T11:42:07,429 ^~ 2022-12-14T11:42:07,451 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-14T11:42:07,452 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,452 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,452 ^~ 2022-12-14T11:42:07,454 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-14T11:42:07,454 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,455 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,455 ^~ 2022-12-14T11:42:07,456 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-14T11:42:07,456 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,457 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,457 ^~ 2022-12-14T11:42:07,462 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-14T11:42:07,463 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,463 if (status != eslOK || nres != W) { 2022-12-14T11:42:07,464 ^~ 2022-12-14T11:42:07,464 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,465 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,466 ^~ 2022-12-14T11:42:07,486 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-14T11:42:07,487 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,487 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-14T11:42:07,488 ^ 2022-12-14T11:42:07,493 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,494 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-14T11:42:07,494 ^~ 2022-12-14T11:42:07,495 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-14T11:42:07,496 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,497 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-14T11:42:07,497 ^ 2022-12-14T11:42:07,498 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,498 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-14T11:42:07,498 ^~ 2022-12-14T11:42:07,499 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,500 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-14T11:42:07,500 ^ 2022-12-14T11:42:07,501 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,501 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-14T11:42:07,501 ^ 2022-12-14T11:42:07,502 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,502 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-14T11:42:07,503 ^ 2022-12-14T11:42:07,504 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,504 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-14T11:42:07,505 ^ 2022-12-14T11:42:07,505 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,506 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-14T11:42:07,506 ^ 2022-12-14T11:42:07,507 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,507 if (inx < volume->end_seq) break; 2022-12-14T11:42:07,508 ^ 2022-12-14T11:42:07,508 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,509 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-14T11:42:07,509 ^~ 2022-12-14T11:42:07,510 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,510 if (ncbi->index_start == -1 || inx > end) { 2022-12-14T11:42:07,511 ^~ 2022-12-14T11:42:07,511 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,512 if (ncbi->index_start == -1 || inx > end) { 2022-12-14T11:42:07,512 ^ 2022-12-14T11:42:07,512 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,513 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-14T11:42:07,513 ^~ 2022-12-14T11:42:07,514 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,514 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-14T11:42:07,515 ^~ 2022-12-14T11:42:07,515 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,516 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-14T11:42:07,516 ^~ 2022-12-14T11:42:07,517 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-14T11:42:07,517 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,518 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,518 ^~ 2022-12-14T11:42:07,519 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,519 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-14T11:42:07,520 ^~ 2022-12-14T11:42:07,520 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,521 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-14T11:42:07,521 ^~ 2022-12-14T11:42:07,522 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-14T11:42:07,522 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,523 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,523 ^~ 2022-12-14T11:42:07,524 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,524 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-14T11:42:07,525 ^~ 2022-12-14T11:42:07,531 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,532 if (ncbi->seq_apos - sq->doff < size) { 2022-12-14T11:42:07,532 ^ 2022-12-14T11:42:07,536 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-14T11:42:07,537 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,537 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,538 ^~ 2022-12-14T11:42:07,542 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,542 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-14T11:42:07,543 ^~ 2022-12-14T11:42:07,553 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-14T11:42:07,553 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,554 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-14T11:42:07,554 ^~ 2022-12-14T11:42:07,560 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,561 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-14T11:42:07,562 ^~ 2022-12-14T11:42:07,574 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-14T11:42:07,575 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,576 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-14T11:42:07,576 ^ 2022-12-14T11:42:07,577 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,577 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-14T11:42:07,578 ^ 2022-12-14T11:42:07,578 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,579 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-14T11:42:07,579 ^~ 2022-12-14T11:42:07,581 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-14T11:42:07,581 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,582 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-14T11:42:07,582 ^ 2022-12-14T11:42:07,583 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,584 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-14T11:42:07,584 ^ 2022-12-14T11:42:07,585 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:07,585 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-14T11:42:07,585 ^~ 2022-12-14T11:42:07,592 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-14T11:42:07,593 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:07,593 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-14T11:42:07,594 ^~ 2022-12-14T11:42:08,966 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-14T11:42:08,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-14T11:42:09,386 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-14T11:42:09,387 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:09,387 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-14T11:42:09,388 ^~ 2022-12-14T11:42:09,814 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-14T11:42:09,816 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-14T11:42:10,008 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-14T11:42:10,010 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-14T11:42:10,469 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-14T11:42:10,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-14T11:42:10,546 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-14T11:42:10,548 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-14T11:42:12,194 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-14T11:42:12,196 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-14T11:42:12,965 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-14T11:42:12,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-14T11:42:13,276 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-14T11:42:13,278 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:13,279 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-14T11:42:13,279 ^ 2022-12-14T11:42:13,583 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-14T11:42:13,585 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-14T11:42:13,663 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-14T11:42:13,665 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-14T11:42:14,076 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-14T11:42:14,078 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-14T11:42:14,294 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-14T11:42:14,296 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-14T11:42:14,759 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-14T11:42:14,760 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-14T11:42:14,760 for (pos = 0; pos < sq->n; pos++) 2022-12-14T11:42:14,761 ^ 2022-12-14T11:42:14,761 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-14T11:42:14,762 for (pos = 1; pos <= sq->n; pos++) 2022-12-14T11:42:14,762 ^~ 2022-12-14T11:42:16,681 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-14T11:42:16,683 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-14T11:42:17,203 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-14T11:42:17,204 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-14T11:42:17,563 In file included from vendor/easel/esl_hmm.c:9: 2022-12-14T11:42:17,564 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-14T11:42:17,564 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:17,565 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-14T11:42:17,565 ^ 2022-12-14T11:42:17,566 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-14T11:42:17,566 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-14T11:42:17,567 ^~~~~~~ 2022-12-14T11:42:17,567 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:17,568 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-14T11:42:17,568 ^~~ 2022-12-14T11:42:17,569 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-14T11:42:17,569 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-14T11:42:17,570 ^~~~~~~ 2022-12-14T11:42:17,683 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-14T11:42:17,684 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:42:17,684 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-14T11:42:17,685 ~~~~^~~~~~~ 2022-12-14T11:42:17,901 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-14T11:42:17,903 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-14T11:42:18,424 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-14T11:42:18,425 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:18,425 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-14T11:42:18,426 ^~~~~~~~~~~~~~~~ 2022-12-14T11:42:19,419 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-14T11:42:19,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-14T11:42:19,765 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-14T11:42:19,767 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:19,768 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-14T11:42:19,768 ^~ 2022-12-14T11:42:20,367 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-14T11:42:20,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-14T11:42:20,796 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-14T11:42:20,798 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-14T11:42:20,986 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-14T11:42:20,988 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-14T11:42:21,260 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-14T11:42:21,261 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:42:21,261 if (opt_fx) *opt_fx = fx; 2022-12-14T11:42:21,262 ~~~~~~~~^~~~ 2022-12-14T11:42:21,263 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:42:21,263 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-14T11:42:21,264 ~~^~~ 2022-12-14T11:42:21,264 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-14T11:42:21,265 double ax,bx,cx; 2022-12-14T11:42:21,265 ^~ 2022-12-14T11:42:21,266 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-14T11:42:21,266 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-14T11:42:21,267 ~^~~~~~~~~~~~~ 2022-12-14T11:42:21,267 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-14T11:42:21,267 double ax,bx,cx; 2022-12-14T11:42:21,268 ^~ 2022-12-14T11:42:21,460 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-14T11:42:21,462 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-14T11:42:21,839 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-14T11:42:21,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-14T11:42:21,916 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-14T11:42:21,917 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:21,918 if (alphatype != dd->abc_r->type) 2022-12-14T11:42:21,918 ^~ 2022-12-14T11:42:21,939 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-14T11:42:21,939 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:21,940 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-14T11:42:21,940 ^ 2022-12-14T11:42:21,941 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:21,941 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-14T11:42:21,942 ^ 2022-12-14T11:42:21,942 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:21,943 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-14T11:42:21,943 ^ 2022-12-14T11:42:21,944 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:21,944 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-14T11:42:21,945 ^ 2022-12-14T11:42:21,947 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:21,948 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-14T11:42:21,949 ^~ 2022-12-14T11:42:21,949 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:21,950 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-14T11:42:21,950 ^~ 2022-12-14T11:42:21,951 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:21,951 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-14T11:42:21,952 ^~ 2022-12-14T11:42:21,954 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:21,955 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-14T11:42:21,957 ^~ 2022-12-14T11:42:22,025 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-14T11:42:22,026 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-14T11:42:22,027 } 2022-12-14T11:42:22,027 ^ 2022-12-14T11:42:22,041 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-14T11:42:22,042 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-14T11:42:22,043 } 2022-12-14T11:42:22,043 ^ 2022-12-14T11:42:22,458 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-14T11:42:22,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-14T11:42:22,736 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-14T11:42:22,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-14T11:42:22,755 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-14T11:42:22,758 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-14T11:42:23,338 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-14T11:42:23,341 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-14T11:42:24,151 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-14T11:42:24,152 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-14T11:42:24,186 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-14T11:42:24,189 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-14T11:42:24,814 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-14T11:42:24,817 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-14T11:42:25,868 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-14T11:42:25,870 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-14T11:42:26,153 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-14T11:42:26,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-14T11:42:26,366 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-14T11:42:26,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-14T11:42:26,493 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-14T11:42:26,495 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-14T11:42:26,705 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-14T11:42:26,706 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,707 for (h = 0; h < kh->hashsize; h++) 2022-12-14T11:42:26,708 ^ 2022-12-14T11:42:26,709 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-14T11:42:26,710 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,711 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-14T11:42:26,711 ^ 2022-12-14T11:42:26,712 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-14T11:42:26,713 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,713 for (h = 0; h < kh->hashsize; h++) 2022-12-14T11:42:26,714 ^ 2022-12-14T11:42:26,716 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-14T11:42:26,716 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,718 if (kh->nkeys > 3*kh->hashsize) 2022-12-14T11:42:26,719 ^ 2022-12-14T11:42:26,721 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-14T11:42:26,722 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,724 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-14T11:42:26,725 ^ 2022-12-14T11:42:26,736 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-14T11:42:26,737 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:26,737 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-14T11:42:26,738 ^ 2022-12-14T11:42:27,099 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-14T11:42:27,101 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-14T11:42:27,122 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-14T11:42:27,124 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-14T11:42:27,295 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-14T11:42:27,297 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-14T11:42:27,519 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-14T11:42:27,520 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-14T11:42:27,831 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-14T11:42:27,833 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-14T11:42:28,159 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-14T11:42:28,160 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-14T11:42:28,358 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-14T11:42:28,360 creating build/temp.linux-armv7l-cpython-37/build 2022-12-14T11:42:28,361 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-14T11:42:28,365 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-14T11:42:28,914 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-14T11:42:28,915 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:28,916 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-14T11:42:28,916 ^~ 2022-12-14T11:42:29,276 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-14T11:42:29,278 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-14T11:42:32,813 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-14T11:42:32,814 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-14T11:42:36,133 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-14T11:42:36,134 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-14T11:42:37,216 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-14T11:42:37,696 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-14T11:42:37,704 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-14T11:42:37,706 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-14T11:42:37,707 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-14T11:42:37,708 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-14T11:42:37,709 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-14T11:42:37,712 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-14T11:42:37,712 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-14T11:42:37,714 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-14T11:42:37,727 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-14T11:42:37,738 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-14T11:42:38,142 In file included from vendor/hmmer/src/errors.c:19: 2022-12-14T11:42:38,143 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,144 #error "No vector implementation enabled" 2022-12-14T11:42:38,144 ^~~~~ 2022-12-14T11:42:38,145 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,145 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,146 ^~~~~~ 2022-12-14T11:42:38,147 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,147 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,148 ^~~~~~ 2022-12-14T11:42:38,149 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,150 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,150 ^~~~~~ 2022-12-14T11:42:38,151 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,155 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,156 ^~~~~~ 2022-12-14T11:42:38,156 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,157 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,157 ^~~~~~~~~~~ 2022-12-14T11:42:38,158 P7_PROFILE 2022-12-14T11:42:38,159 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,160 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,160 ^~~~~~~~~~~ 2022-12-14T11:42:38,160 P7_PROFILE 2022-12-14T11:42:38,161 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,161 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,162 ^~~~~~~~~~~ 2022-12-14T11:42:38,162 P7_PROFILE 2022-12-14T11:42:38,163 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,163 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,164 ^~~~~~~~~~~ 2022-12-14T11:42:38,164 P7_PROFILE 2022-12-14T11:42:38,165 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,165 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,166 ^~~~~~~~~~~ 2022-12-14T11:42:38,174 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,177 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,177 ^~~~~~~~~~~ 2022-12-14T11:42:38,178 P7_PROFILE 2022-12-14T11:42:38,179 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,180 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,180 ^~~~~~~~~~~ 2022-12-14T11:42:38,181 P7_PROFILE 2022-12-14T11:42:38,182 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,182 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,183 ^~~~~~~~~~~ 2022-12-14T11:42:38,184 P7_PROFILE 2022-12-14T11:42:38,184 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,185 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,186 ^~~~~~ 2022-12-14T11:42:38,186 P7_GMX 2022-12-14T11:42:38,187 In file included from vendor/hmmer/src/build.c:32: 2022-12-14T11:42:38,187 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,188 #error "No vector implementation enabled" 2022-12-14T11:42:38,189 ^~~~~ 2022-12-14T11:42:38,189 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,190 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,191 ^~~~~~ 2022-12-14T11:42:38,192 P7_GMX 2022-12-14T11:42:38,192 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,193 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,194 ^~~~~~ 2022-12-14T11:42:38,195 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,196 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,196 ^~~~~~ 2022-12-14T11:42:38,197 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,197 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,199 ^~~~~~ 2022-12-14T11:42:38,199 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,200 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,201 ^~~~~~ 2022-12-14T11:42:38,201 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,202 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,203 ^~~~~~ 2022-12-14T11:42:38,204 P7_GMX 2022-12-14T11:42:38,205 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,205 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,206 ^~~~~~ 2022-12-14T11:42:38,206 P7_GMX 2022-12-14T11:42:38,207 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,207 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,208 ^~~~~~~~~~~ 2022-12-14T11:42:38,209 P7_PROFILE 2022-12-14T11:42:38,209 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,210 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,210 ^~~~~~~~~~~ 2022-12-14T11:42:38,211 P7_PROFILE 2022-12-14T11:42:38,211 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,212 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:38,213 ^~~~~~~~~~~ 2022-12-14T11:42:38,214 P7_PROFILE 2022-12-14T11:42:38,215 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,215 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,215 ^~~~~~~~~~~ 2022-12-14T11:42:38,216 P7_PROFILE 2022-12-14T11:42:38,217 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,217 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:38,218 ^~~~~~~~~~~ 2022-12-14T11:42:38,218 P7_PROFILE 2022-12-14T11:42:38,219 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,219 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,220 ^~~~~~~~~~~ 2022-12-14T11:42:38,221 P7_PROFILE 2022-12-14T11:42:38,222 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,222 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:38,223 ^~~~~~~~~~~ 2022-12-14T11:42:38,223 P7_PROFILE 2022-12-14T11:42:38,224 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,225 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:38,226 ^~~~~~~~~~~ 2022-12-14T11:42:38,227 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,228 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:38,229 ^~~~~~~~~~~ 2022-12-14T11:42:38,230 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,230 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,231 ^~~~~~~~~~~ 2022-12-14T11:42:38,231 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,232 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:38,233 ^~~~~~~~~~~ 2022-12-14T11:42:38,233 P7_PROFILE 2022-12-14T11:42:38,234 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,234 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:38,235 ^~~~~~~~~~~ 2022-12-14T11:42:38,236 P7_PROFILE 2022-12-14T11:42:38,236 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,237 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,237 ^~~~~~~~~~~ 2022-12-14T11:42:38,238 P7_PROFILE 2022-12-14T11:42:38,238 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,239 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,239 ^~~~~~~~~~~ 2022-12-14T11:42:38,240 P7_PROFILE 2022-12-14T11:42:38,240 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,241 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:38,241 ^~~~~~~~~~~ 2022-12-14T11:42:38,241 P7_PROFILE 2022-12-14T11:42:38,242 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,243 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,243 ^~~~~~~~~~~ 2022-12-14T11:42:38,244 P7_PROFILE 2022-12-14T11:42:38,244 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,245 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,246 ^~~~~~ 2022-12-14T11:42:38,246 P7_GMX 2022-12-14T11:42:38,247 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,247 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,248 ^~~~~~ 2022-12-14T11:42:38,248 P7_GMX 2022-12-14T11:42:38,249 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,250 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,250 ^~~~~~ 2022-12-14T11:42:38,251 P7_GMX 2022-12-14T11:42:38,251 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,252 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,252 ^~~~~~ 2022-12-14T11:42:38,253 P7_GMX 2022-12-14T11:42:38,253 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-14T11:42:38,254 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,255 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:38,255 ^~~~~~~~~~~ 2022-12-14T11:42:38,256 P7_PROFILE 2022-12-14T11:42:38,256 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-14T11:42:38,257 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,258 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:38,258 ^~~~~~~~~~~ 2022-12-14T11:42:38,259 P7_PROFILE 2022-12-14T11:42:38,259 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,260 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:38,260 ^~~~~~~~~~~ 2022-12-14T11:42:38,261 P7_PROFILE 2022-12-14T11:42:38,261 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,262 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:38,262 ^~~~~~~~~~~ 2022-12-14T11:42:38,262 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,263 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:38,263 ^~~~~~~~~~~ 2022-12-14T11:42:38,264 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,264 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:38,265 ^~~~~~~~~~~ 2022-12-14T11:42:38,265 P7_PROFILE 2022-12-14T11:42:38,266 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,267 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:38,268 ^~~~~~~~~~~ 2022-12-14T11:42:38,268 P7_PROFILE 2022-12-14T11:42:38,269 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-14T11:42:38,270 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,270 #error "No vector implementation enabled" 2022-12-14T11:42:38,271 ^~~~~ 2022-12-14T11:42:38,272 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,272 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,273 ^~~~~~ 2022-12-14T11:42:38,274 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,275 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,275 ^~~~~~ 2022-12-14T11:42:38,276 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,277 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,277 ^~~~~~ 2022-12-14T11:42:38,278 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,279 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,279 ^~~~~~ 2022-12-14T11:42:38,280 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,280 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:38,281 ^~~~~~~~~~~ 2022-12-14T11:42:38,282 P7_PROFILE 2022-12-14T11:42:38,282 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,283 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,284 ^~~~~~~~~~~ 2022-12-14T11:42:38,284 P7_PROFILE 2022-12-14T11:42:38,284 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,285 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,285 ^~~~~~~~~~~ 2022-12-14T11:42:38,286 P7_PROFILE 2022-12-14T11:42:38,286 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-14T11:42:38,287 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,287 #error "No vector implementation enabled" 2022-12-14T11:42:38,288 ^~~~~ 2022-12-14T11:42:38,289 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,289 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,290 ^~~~~~~~~~~ 2022-12-14T11:42:38,290 P7_PROFILE 2022-12-14T11:42:38,291 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,292 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,293 ^~~~~~ 2022-12-14T11:42:38,294 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,295 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,295 ^~~~~~ 2022-12-14T11:42:38,296 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,296 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,297 ^~~~~~ 2022-12-14T11:42:38,298 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,299 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,300 ^~~~~~ 2022-12-14T11:42:38,300 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,301 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,302 ^~~~~~~~~~~ 2022-12-14T11:42:38,303 P7_PROFILE 2022-12-14T11:42:38,304 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,305 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,306 ^~~~~~~~~~~ 2022-12-14T11:42:38,307 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,307 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,308 ^~~~~~~~~~~ 2022-12-14T11:42:38,309 P7_PROFILE 2022-12-14T11:42:38,309 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,310 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,311 ^~~~~~~~~~~ 2022-12-14T11:42:38,311 P7_PROFILE 2022-12-14T11:42:38,312 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,312 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,313 ^~~~~~~~~~~ 2022-12-14T11:42:38,314 P7_PROFILE 2022-12-14T11:42:38,315 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,315 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,316 ^~~~~~~~~~~ 2022-12-14T11:42:38,317 P7_PROFILE 2022-12-14T11:42:38,318 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,318 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,319 ^~~~~~~~~~~ 2022-12-14T11:42:38,320 P7_PROFILE 2022-12-14T11:42:38,320 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,321 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,321 ^~~~~~~~~~~ 2022-12-14T11:42:38,322 P7_PROFILE 2022-12-14T11:42:38,322 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,323 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,324 ^~~~~~~~~~~ 2022-12-14T11:42:38,324 P7_PROFILE 2022-12-14T11:42:38,325 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,326 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,326 ^~~~~~ 2022-12-14T11:42:38,327 P7_GMX 2022-12-14T11:42:38,328 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,329 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,329 ^~~~~~~~~~~ 2022-12-14T11:42:38,330 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,330 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,331 ^~~~~~ 2022-12-14T11:42:38,331 P7_GMX 2022-12-14T11:42:38,332 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,333 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,333 ^~~~~~ 2022-12-14T11:42:38,334 P7_GMX 2022-12-14T11:42:38,337 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,338 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,339 ^~~~~~~~~~~ 2022-12-14T11:42:38,340 P7_PROFILE 2022-12-14T11:42:38,340 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,341 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,341 ^~~~~~ 2022-12-14T11:42:38,342 P7_GMX 2022-12-14T11:42:38,342 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,343 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,343 ^~~~~~~~~~~ 2022-12-14T11:42:38,344 P7_PROFILE 2022-12-14T11:42:38,345 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,346 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,346 ^~~~~~~~~~~ 2022-12-14T11:42:38,347 P7_PROFILE 2022-12-14T11:42:38,348 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,349 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,349 ^~~~~~ 2022-12-14T11:42:38,350 P7_GMX 2022-12-14T11:42:38,351 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,351 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,352 ^~~~~~ 2022-12-14T11:42:38,352 P7_GMX 2022-12-14T11:42:38,353 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,353 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:38,354 ^~~~~~~~~~~ 2022-12-14T11:42:38,355 P7_PROFILE 2022-12-14T11:42:38,356 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,357 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,358 ^~~~~~ 2022-12-14T11:42:38,359 P7_GMX 2022-12-14T11:42:38,360 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,361 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:38,361 ^~~~~~~~~~~ 2022-12-14T11:42:38,362 P7_PROFILE 2022-12-14T11:42:38,363 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-14T11:42:38,364 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,365 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,365 ^~~~~~ 2022-12-14T11:42:38,366 P7_GMX 2022-12-14T11:42:38,366 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,367 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:38,368 ^~~~~~~~~~~ 2022-12-14T11:42:38,368 P7_PROFILE 2022-12-14T11:42:38,369 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,369 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:38,370 ^~~~~~~~~~~ 2022-12-14T11:42:38,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-14T11:42:38,371 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,371 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:38,371 ^~~~~~~~~~~ 2022-12-14T11:42:38,372 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,372 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:38,373 ^~~~~~~~~~~ 2022-12-14T11:42:38,374 P7_PROFILE 2022-12-14T11:42:38,375 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,375 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:38,376 ^~~~~~~~~~~ 2022-12-14T11:42:38,376 P7_PROFILE 2022-12-14T11:42:38,377 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,378 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:38,379 ^~~~~~~~~~~ 2022-12-14T11:42:38,379 P7_PROFILE 2022-12-14T11:42:38,380 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,380 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:38,381 ^~~~~~~~~~~ 2022-12-14T11:42:38,382 P7_PROFILE 2022-12-14T11:42:38,382 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,383 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:38,383 ^~~~~~~~~~~ 2022-12-14T11:42:38,384 P7_PROFILE 2022-12-14T11:42:38,385 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,385 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:38,386 ^~~~~~~~~~~ 2022-12-14T11:42:38,387 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,387 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:38,388 ^~~~~~~~~~~ 2022-12-14T11:42:38,388 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,388 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:38,389 ^~~~~~~~~~~ 2022-12-14T11:42:38,390 P7_PROFILE 2022-12-14T11:42:38,390 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,391 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:38,391 ^~~~~~~~~~~ 2022-12-14T11:42:38,392 P7_PROFILE 2022-12-14T11:42:38,392 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,393 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:38,393 ^~~~~~~~~~~ 2022-12-14T11:42:38,394 P7_PROFILE 2022-12-14T11:42:38,395 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,395 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:38,396 ^~~~~~~~~~~ 2022-12-14T11:42:38,396 P7_PROFILE 2022-12-14T11:42:38,428 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-14T11:42:38,430 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-14T11:42:38,447 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-14T11:42:38,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-14T11:42:38,571 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-14T11:42:38,573 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-14T11:42:38,646 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-14T11:42:38,648 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-14T11:42:38,778 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-14T11:42:38,778 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,779 #error "No vector implementation enabled" 2022-12-14T11:42:38,779 ^~~~~ 2022-12-14T11:42:38,780 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-14T11:42:38,781 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,781 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,782 ^~~~~~ 2022-12-14T11:42:38,782 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,783 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,784 ^~~~~~ 2022-12-14T11:42:38,785 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,785 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,786 ^~~~~~ 2022-12-14T11:42:38,786 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,787 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,788 ^~~~~~ 2022-12-14T11:42:38,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-14T11:42:38,789 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,790 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,791 ^~~~~~~~~~~ 2022-12-14T11:42:38,791 P7_PROFILE 2022-12-14T11:42:38,792 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,793 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,793 ^~~~~~~~~~~ 2022-12-14T11:42:38,794 P7_PROFILE 2022-12-14T11:42:38,795 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,795 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,796 ^~~~~~~~~~~ 2022-12-14T11:42:38,796 P7_PROFILE 2022-12-14T11:42:38,797 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,797 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,797 ^~~~~~~~~~~ 2022-12-14T11:42:38,798 P7_PROFILE 2022-12-14T11:42:38,801 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,802 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,803 ^~~~~~~~~~~ 2022-12-14T11:42:38,806 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,807 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,808 ^~~~~~~~~~~ 2022-12-14T11:42:38,808 P7_PROFILE 2022-12-14T11:42:38,811 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,812 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,812 ^~~~~~~~~~~ 2022-12-14T11:42:38,815 P7_PROFILE 2022-12-14T11:42:38,819 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,823 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,824 ^~~~~~~~~~~ 2022-12-14T11:42:38,825 P7_PROFILE 2022-12-14T11:42:38,826 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,827 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,828 ^~~~~~ 2022-12-14T11:42:38,831 P7_GMX 2022-12-14T11:42:38,834 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,835 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,835 ^~~~~~ 2022-12-14T11:42:38,836 P7_GMX 2022-12-14T11:42:38,837 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,837 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,838 ^~~~~~ 2022-12-14T11:42:38,844 P7_GMX 2022-12-14T11:42:38,844 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:38,845 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,846 ^~~~~~ 2022-12-14T11:42:38,850 P7_GMX 2022-12-14T11:42:38,851 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,853 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:38,854 ^~~~~~~~~~~ 2022-12-14T11:42:38,855 P7_PROFILE 2022-12-14T11:42:38,856 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,859 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:38,862 ^~~~~~~~~~~ 2022-12-14T11:42:38,863 P7_PROFILE 2022-12-14T11:42:38,863 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,864 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:38,864 ^~~~~~~~~~~ 2022-12-14T11:42:38,865 P7_PROFILE 2022-12-14T11:42:38,865 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,866 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:38,866 ^~~~~~~~~~~ 2022-12-14T11:42:38,867 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,867 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:38,868 ^~~~~~~~~~~ 2022-12-14T11:42:38,868 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,869 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:38,869 ^~~~~~~~~~~ 2022-12-14T11:42:38,870 P7_PROFILE 2022-12-14T11:42:38,870 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,871 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:38,871 ^~~~~~~~~~~ 2022-12-14T11:42:38,872 P7_PROFILE 2022-12-14T11:42:38,873 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,873 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:38,874 ^~~~~~~~~~~ 2022-12-14T11:42:38,874 P7_PROFILE 2022-12-14T11:42:38,899 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-14T11:42:38,902 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-14T11:42:38,903 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-14T11:42:38,918 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-14T11:42:38,953 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-14T11:42:38,954 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:38,954 #error "No vector implementation enabled" 2022-12-14T11:42:38,955 ^~~~~ 2022-12-14T11:42:38,957 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,957 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:38,958 ^~~~~~ 2022-12-14T11:42:38,958 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,959 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:38,959 ^~~~~~ 2022-12-14T11:42:38,960 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,961 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:38,962 ^~~~~~ 2022-12-14T11:42:38,962 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:38,963 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:38,963 ^~~~~~ 2022-12-14T11:42:38,964 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,965 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:38,970 ^~~~~~~~~~~ 2022-12-14T11:42:38,971 P7_PROFILE 2022-12-14T11:42:38,972 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,972 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:38,974 ^~~~~~~~~~~ 2022-12-14T11:42:38,974 P7_PROFILE 2022-12-14T11:42:38,975 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,976 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:38,976 ^~~~~~~~~~~ 2022-12-14T11:42:38,976 P7_PROFILE 2022-12-14T11:42:38,977 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,978 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:38,978 ^~~~~~~~~~~ 2022-12-14T11:42:38,979 P7_PROFILE 2022-12-14T11:42:38,980 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:38,980 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:38,981 ^~~~~~~~~~~ 2022-12-14T11:42:38,985 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,986 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:38,987 ^~~~~~~~~~~ 2022-12-14T11:42:38,987 P7_PROFILE 2022-12-14T11:42:38,991 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,991 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:38,994 ^~~~~~~~~~~ 2022-12-14T11:42:38,997 P7_PROFILE 2022-12-14T11:42:38,997 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:38,998 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:38,999 ^~~~~~~~~~~ 2022-12-14T11:42:38,999 P7_PROFILE 2022-12-14T11:42:39,000 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,003 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,014 ^~~~~~ 2022-12-14T11:42:39,015 P7_GMX 2022-12-14T11:42:39,016 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,017 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,017 ^~~~~~ 2022-12-14T11:42:39,018 P7_GMX 2022-12-14T11:42:39,018 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,019 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,020 ^~~~~~ 2022-12-14T11:42:39,020 P7_GMX 2022-12-14T11:42:39,021 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,021 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,022 ^~~~~~ 2022-12-14T11:42:39,022 P7_GMX 2022-12-14T11:42:39,023 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,024 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,027 ^~~~~~~~~~~ 2022-12-14T11:42:39,028 P7_PROFILE 2022-12-14T11:42:39,030 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,032 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,032 ^~~~~~~~~~~ 2022-12-14T11:42:39,035 P7_PROFILE 2022-12-14T11:42:39,035 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,037 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,038 ^~~~~~~~~~~ 2022-12-14T11:42:39,039 P7_PROFILE 2022-12-14T11:42:39,042 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,043 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,045 ^~~~~~~~~~~ 2022-12-14T11:42:39,046 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,046 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,048 ^~~~~~~~~~~ 2022-12-14T11:42:39,049 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,049 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,053 ^~~~~~~~~~~ 2022-12-14T11:42:39,054 P7_PROFILE 2022-12-14T11:42:39,054 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,056 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,057 ^~~~~~~~~~~ 2022-12-14T11:42:39,057 P7_PROFILE 2022-12-14T11:42:39,063 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,064 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,065 ^~~~~~~~~~~ 2022-12-14T11:42:39,066 P7_PROFILE 2022-12-14T11:42:39,095 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-14T11:42:39,097 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-14T11:42:39,266 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-14T11:42:39,267 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:39,267 #error "No vector implementation enabled" 2022-12-14T11:42:39,268 ^~~~~ 2022-12-14T11:42:39,271 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,272 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:39,272 ^~~~~~ 2022-12-14T11:42:39,274 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,274 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:39,275 ^~~~~~ 2022-12-14T11:42:39,276 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,276 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:39,277 ^~~~~~ 2022-12-14T11:42:39,277 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,278 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:39,278 ^~~~~~ 2022-12-14T11:42:39,284 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,285 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:39,286 ^~~~~~~~~~~ 2022-12-14T11:42:39,286 P7_PROFILE 2022-12-14T11:42:39,290 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,290 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:39,291 ^~~~~~~~~~~ 2022-12-14T11:42:39,291 P7_PROFILE 2022-12-14T11:42:39,295 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,296 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:39,296 ^~~~~~~~~~~ 2022-12-14T11:42:39,297 P7_PROFILE 2022-12-14T11:42:39,301 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,301 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:39,302 ^~~~~~~~~~~ 2022-12-14T11:42:39,302 P7_PROFILE 2022-12-14T11:42:39,307 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,307 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:39,308 ^~~~~~~~~~~ 2022-12-14T11:42:39,314 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,314 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:39,315 ^~~~~~~~~~~ 2022-12-14T11:42:39,315 P7_PROFILE 2022-12-14T11:42:39,319 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,320 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:39,320 ^~~~~~~~~~~ 2022-12-14T11:42:39,320 P7_PROFILE 2022-12-14T11:42:39,324 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-14T11:42:39,325 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:39,325 #error "No vector implementation enabled" 2022-12-14T11:42:39,326 ^~~~~ 2022-12-14T11:42:39,327 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,327 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:39,328 ^~~~~~ 2022-12-14T11:42:39,328 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,329 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:39,329 ^~~~~~ 2022-12-14T11:42:39,330 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,331 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:39,331 ^~~~~~ 2022-12-14T11:42:39,332 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,332 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:39,333 ^~~~~~ 2022-12-14T11:42:39,334 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,334 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:39,335 ^~~~~~~~~~~ 2022-12-14T11:42:39,336 P7_PROFILE 2022-12-14T11:42:39,336 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,337 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:39,338 ^~~~~~~~~~~ 2022-12-14T11:42:39,338 P7_PROFILE 2022-12-14T11:42:39,353 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,354 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:39,355 ^~~~~~~~~~~ 2022-12-14T11:42:39,356 P7_PROFILE 2022-12-14T11:42:39,356 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,357 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,357 ^~~~~~~~~~~ 2022-12-14T11:42:39,358 P7_PROFILE 2022-12-14T11:42:39,358 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,359 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,360 ^~~~~~ 2022-12-14T11:42:39,361 P7_GMX 2022-12-14T11:42:39,361 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,362 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:39,363 ^~~~~~~~~~~ 2022-12-14T11:42:39,374 P7_PROFILE 2022-12-14T11:42:39,375 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,376 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,377 ^~~~~~ 2022-12-14T11:42:39,377 P7_GMX 2022-12-14T11:42:39,378 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,378 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:39,379 ^~~~~~~~~~~ 2022-12-14T11:42:39,380 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,381 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,381 ^~~~~~ 2022-12-14T11:42:39,382 P7_GMX 2022-12-14T11:42:39,393 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,393 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:39,394 ^~~~~~~~~~~ 2022-12-14T11:42:39,395 P7_PROFILE 2022-12-14T11:42:39,396 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,397 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:39,397 ^~~~~~~~~~~ 2022-12-14T11:42:39,398 P7_PROFILE 2022-12-14T11:42:39,398 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,399 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,400 ^~~~~~~~~~~ 2022-12-14T11:42:39,400 P7_PROFILE 2022-12-14T11:42:39,401 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,401 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,402 ^~~~~~ 2022-12-14T11:42:39,402 P7_GMX 2022-12-14T11:42:39,412 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,412 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,417 ^~~~~~ 2022-12-14T11:42:39,418 P7_GMX 2022-12-14T11:42:39,418 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,419 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,420 ^~~~~~ 2022-12-14T11:42:39,420 P7_GMX 2022-12-14T11:42:39,420 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,421 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,421 ^~~~~~~~~~~ 2022-12-14T11:42:39,422 P7_PROFILE 2022-12-14T11:42:39,422 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,423 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,423 ^~~~~~ 2022-12-14T11:42:39,424 P7_GMX 2022-12-14T11:42:39,425 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,425 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,425 ^~~~~~~~~~~ 2022-12-14T11:42:39,426 P7_PROFILE 2022-12-14T11:42:39,432 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,434 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,434 ^~~~~~ 2022-12-14T11:42:39,435 P7_GMX 2022-12-14T11:42:39,435 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,435 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,436 ^~~~~~~~~~~ 2022-12-14T11:42:39,436 P7_PROFILE 2022-12-14T11:42:39,437 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,437 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,438 ^~~~~~~~~~~ 2022-12-14T11:42:39,438 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,439 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,439 ^~~~~~~~~~~ 2022-12-14T11:42:39,440 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,440 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,441 ^~~~~~~~~~~ 2022-12-14T11:42:39,441 P7_PROFILE 2022-12-14T11:42:39,442 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,442 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,443 ^~~~~~~~~~~ 2022-12-14T11:42:39,443 P7_PROFILE 2022-12-14T11:42:39,444 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,444 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,444 ^~~~~~~~~~~ 2022-12-14T11:42:39,445 P7_PROFILE 2022-12-14T11:42:39,445 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,446 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,446 ^~~~~~~~~~~ 2022-12-14T11:42:39,446 P7_PROFILE 2022-12-14T11:42:39,447 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,447 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,448 ^~~~~~~~~~~ 2022-12-14T11:42:39,448 P7_PROFILE 2022-12-14T11:42:39,449 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,449 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,450 ^~~~~~~~~~~ 2022-12-14T11:42:39,450 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,451 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,451 ^~~~~~~~~~~ 2022-12-14T11:42:39,451 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,452 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,452 ^~~~~~~~~~~ 2022-12-14T11:42:39,453 P7_PROFILE 2022-12-14T11:42:39,454 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,454 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,455 ^~~~~~~~~~~ 2022-12-14T11:42:39,455 P7_PROFILE 2022-12-14T11:42:39,456 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,456 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,456 ^~~~~~~~~~~ 2022-12-14T11:42:39,457 P7_PROFILE 2022-12-14T11:42:39,457 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,458 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,458 ^~~~~~~~~~~ 2022-12-14T11:42:39,459 P7_PROFILE 2022-12-14T11:42:39,459 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-14T11:42:39,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-14T11:42:39,460 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-14T11:42:39,460 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-14T11:42:39,499 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-14T11:42:39,500 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:39,500 #error "No vector implementation enabled" 2022-12-14T11:42:39,500 ^~~~~ 2022-12-14T11:42:39,502 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,503 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:39,503 ^~~~~~ 2022-12-14T11:42:39,504 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,504 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:39,505 ^~~~~~ 2022-12-14T11:42:39,505 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,506 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:39,507 ^~~~~~ 2022-12-14T11:42:39,507 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,508 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:39,508 ^~~~~~ 2022-12-14T11:42:39,509 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,509 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:39,510 ^~~~~~~~~~~ 2022-12-14T11:42:39,511 P7_PROFILE 2022-12-14T11:42:39,513 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,514 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:39,522 ^~~~~~~~~~~ 2022-12-14T11:42:39,523 P7_PROFILE 2022-12-14T11:42:39,524 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,524 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:39,525 ^~~~~~~~~~~ 2022-12-14T11:42:39,525 P7_PROFILE 2022-12-14T11:42:39,526 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,526 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:39,526 ^~~~~~~~~~~ 2022-12-14T11:42:39,527 P7_PROFILE 2022-12-14T11:42:39,528 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,529 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:39,529 ^~~~~~~~~~~ 2022-12-14T11:42:39,533 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,534 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:39,535 ^~~~~~~~~~~ 2022-12-14T11:42:39,535 P7_PROFILE 2022-12-14T11:42:39,536 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,537 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:39,537 ^~~~~~~~~~~ 2022-12-14T11:42:39,538 P7_PROFILE 2022-12-14T11:42:39,553 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,554 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,554 ^~~~~~~~~~~ 2022-12-14T11:42:39,555 P7_PROFILE 2022-12-14T11:42:39,555 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,556 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,556 ^~~~~~ 2022-12-14T11:42:39,557 P7_GMX 2022-12-14T11:42:39,557 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,557 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,558 ^~~~~~ 2022-12-14T11:42:39,559 P7_GMX 2022-12-14T11:42:39,559 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,560 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,560 ^~~~~~ 2022-12-14T11:42:39,561 P7_GMX 2022-12-14T11:42:39,562 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,562 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,562 ^~~~~~ 2022-12-14T11:42:39,563 P7_GMX 2022-12-14T11:42:39,564 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,565 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,565 ^~~~~~~~~~~ 2022-12-14T11:42:39,566 P7_PROFILE 2022-12-14T11:42:39,575 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,576 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,577 ^~~~~~~~~~~ 2022-12-14T11:42:39,577 P7_PROFILE 2022-12-14T11:42:39,578 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,579 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,579 ^~~~~~~~~~~ 2022-12-14T11:42:39,580 P7_PROFILE 2022-12-14T11:42:39,580 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,581 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,581 ^~~~~~~~~~~ 2022-12-14T11:42:39,581 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,582 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,582 ^~~~~~~~~~~ 2022-12-14T11:42:39,583 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,583 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,584 ^~~~~~~~~~~ 2022-12-14T11:42:39,584 P7_PROFILE 2022-12-14T11:42:39,585 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,585 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,585 ^~~~~~~~~~~ 2022-12-14T11:42:39,586 P7_PROFILE 2022-12-14T11:42:39,590 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,591 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,591 ^~~~~~~~~~~ 2022-12-14T11:42:39,591 P7_PROFILE 2022-12-14T11:42:39,605 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-14T11:42:39,606 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,607 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-14T11:42:39,607 ^~~~~~ 2022-12-14T11:42:39,608 P7_GMX 2022-12-14T11:42:39,609 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,609 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-14T11:42:39,610 ^~~~~~ 2022-12-14T11:42:39,611 P7_GMX 2022-12-14T11:42:39,612 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,613 P7_OPROFILE *om = NULL; 2022-12-14T11:42:39,614 ^~~~~~~~~~~ 2022-12-14T11:42:39,615 P7_PROFILE 2022-12-14T11:42:39,617 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,617 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-14T11:42:39,618 ^~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,618 p7_profile_Create 2022-12-14T11:42:39,618 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-14T11:42:39,619 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-14T11:42:39,619 ^ 2022-12-14T11:42:39,624 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,624 p7_oprofile_Convert(gm, om); 2022-12-14T11:42:39,625 ^~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,626 p7_profile_Compare 2022-12-14T11:42:39,628 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,628 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-14T11:42:39,629 ^~~~~~~~~~~~~ 2022-12-14T11:42:39,629 p7_gmx_Create 2022-12-14T11:42:39,630 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-14T11:42:39,631 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-14T11:42:39,631 ^ 2022-12-14T11:42:39,632 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-14T11:42:39,632 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-14T11:42:39,633 ^ 2022-12-14T11:42:39,634 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,634 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-14T11:42:39,635 ^~~~~~~~~~~~~ 2022-12-14T11:42:39,635 p7_gmx_GrowTo 2022-12-14T11:42:39,636 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-14T11:42:39,636 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:39,636 #error "No vector implementation enabled" 2022-12-14T11:42:39,637 ^~~~~ 2022-12-14T11:42:39,637 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,638 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:39,638 ^~~~~~ 2022-12-14T11:42:39,639 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,640 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:39,640 ^~~~~~ 2022-12-14T11:42:39,641 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,642 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:39,643 ^~~~~~ 2022-12-14T11:42:39,643 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,644 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:39,645 ^~~~~~ 2022-12-14T11:42:39,645 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,646 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-14T11:42:39,646 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,647 p7_ReconfigLength 2022-12-14T11:42:39,647 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,648 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-14T11:42:39,649 ^~~~~~~~~~ 2022-12-14T11:42:39,650 p7_GForward 2022-12-14T11:42:39,652 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,652 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-14T11:42:39,653 ^~~~~~~~~~~ 2022-12-14T11:42:39,654 p7_GBackward 2022-12-14T11:42:39,655 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,656 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:39,656 ^~~~~~~~~~~ 2022-12-14T11:42:39,657 P7_PROFILE 2022-12-14T11:42:39,658 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,659 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-14T11:42:39,659 ^~~~~~~~~~~ 2022-12-14T11:42:39,660 p7_GDecoding 2022-12-14T11:42:39,661 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,662 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:39,662 ^~~~~~~~~~~ 2022-12-14T11:42:39,663 P7_PROFILE 2022-12-14T11:42:39,664 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,665 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:39,665 ^~~~~~~~~~~ 2022-12-14T11:42:39,666 P7_PROFILE 2022-12-14T11:42:39,666 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,667 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-14T11:42:39,667 ^~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,668 p7_GOptimalAccuracy 2022-12-14T11:42:39,668 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,669 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-14T11:42:39,669 ^~~~~~~~~~ 2022-12-14T11:42:39,670 p7_GOATrace 2022-12-14T11:42:39,674 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,674 p7_omx_Reuse(oxf); 2022-12-14T11:42:39,675 ^~~~~~~~~~~~ 2022-12-14T11:42:39,675 p7_gmx_Reuse 2022-12-14T11:42:39,676 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,677 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:39,677 ^~~~~~~~~~~ 2022-12-14T11:42:39,678 P7_PROFILE 2022-12-14T11:42:39,679 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,679 p7_omx_Destroy(oxf); 2022-12-14T11:42:39,680 ^~~~~~~~~~~~~~ 2022-12-14T11:42:39,680 p7_gmx_Destroy 2022-12-14T11:42:39,681 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,682 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:39,682 ^~~~~~~~~~~ 2022-12-14T11:42:39,683 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-14T11:42:39,684 p7_oprofile_Destroy(om); 2022-12-14T11:42:39,684 ^~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,685 p7_profile_Destroy 2022-12-14T11:42:39,703 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,704 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:39,704 ^~~~~~~~~~~ 2022-12-14T11:42:39,705 P7_PROFILE 2022-12-14T11:42:39,705 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,706 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:39,706 ^~~~~~~~~~~ 2022-12-14T11:42:39,707 P7_PROFILE 2022-12-14T11:42:39,707 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,707 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,708 ^~~~~~~~~~~ 2022-12-14T11:42:39,708 P7_PROFILE 2022-12-14T11:42:39,711 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,712 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,712 ^~~~~~ 2022-12-14T11:42:39,713 P7_GMX 2022-12-14T11:42:39,717 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,718 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,718 ^~~~~~ 2022-12-14T11:42:39,719 P7_GMX 2022-12-14T11:42:39,722 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,723 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,724 ^~~~~~ 2022-12-14T11:42:39,724 P7_GMX 2022-12-14T11:42:39,728 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,729 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,729 ^~~~~~ 2022-12-14T11:42:39,730 P7_GMX 2022-12-14T11:42:39,736 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,737 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,737 ^~~~~~~~~~~ 2022-12-14T11:42:39,738 P7_PROFILE 2022-12-14T11:42:39,742 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,742 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,743 ^~~~~~~~~~~ 2022-12-14T11:42:39,743 P7_PROFILE 2022-12-14T11:42:39,748 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,749 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,749 ^~~~~~~~~~~ 2022-12-14T11:42:39,750 P7_PROFILE 2022-12-14T11:42:39,751 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,752 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,752 ^~~~~~~~~~~ 2022-12-14T11:42:39,753 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,754 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,754 ^~~~~~~~~~~ 2022-12-14T11:42:39,758 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,760 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,760 ^~~~~~~~~~~ 2022-12-14T11:42:39,761 P7_PROFILE 2022-12-14T11:42:39,765 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,766 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,767 ^~~~~~~~~~~ 2022-12-14T11:42:39,767 P7_PROFILE 2022-12-14T11:42:39,776 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,776 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,777 ^~~~~~~~~~~ 2022-12-14T11:42:39,777 P7_PROFILE 2022-12-14T11:42:39,784 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-14T11:42:39,786 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,786 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-14T11:42:39,787 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,788 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,789 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-14T11:42:39,789 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,790 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,791 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-14T11:42:39,791 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,792 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,793 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-14T11:42:39,794 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,795 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,796 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-14T11:42:39,796 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,803 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,804 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-14T11:42:39,804 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,805 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:39,805 if (ser_size != ptr - (*buf + *n)){ 2022-12-14T11:42:39,806 ^~ 2022-12-14T11:42:39,806 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-14T11:42:39,806 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,807 ret_obj->envsc = *((float *) &host_32bit); 2022-12-14T11:42:39,807 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,808 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,808 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-14T11:42:39,809 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,809 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,810 ret_obj->dombias = *((float *) &host_32bit); 2022-12-14T11:42:39,810 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,811 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,811 ret_obj->oasc = *((float *) &host_32bit); 2022-12-14T11:42:39,811 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,817 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,817 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-14T11:42:39,818 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,818 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,819 ret_obj->lnP = *((double *) &host_64bit); 2022-12-14T11:42:39,819 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,820 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-14T11:42:39,820 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-14T11:42:39,820 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:39,821 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:39,821 if(ptr - (buf + *n) != obj_size){ 2022-12-14T11:42:39,822 ^~ 2022-12-14T11:42:39,843 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-14T11:42:39,844 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-14T11:42:39,870 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-14T11:42:39,871 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:39,871 #error "No vector implementation enabled" 2022-12-14T11:42:39,871 ^~~~~ 2022-12-14T11:42:39,872 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-14T11:42:39,872 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,873 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:39,874 ^~~~~~ 2022-12-14T11:42:39,874 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,875 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:39,875 ^~~~~~ 2022-12-14T11:42:39,876 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,876 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:39,877 ^~~~~~ 2022-12-14T11:42:39,877 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-14T11:42:39,878 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:39,878 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:39,879 ^~~~~~ 2022-12-14T11:42:39,880 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,880 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:39,881 ^~~~~~~~~~~ 2022-12-14T11:42:39,881 P7_PROFILE 2022-12-14T11:42:39,882 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,883 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:39,884 ^~~~~~~~~~~ 2022-12-14T11:42:39,884 P7_PROFILE 2022-12-14T11:42:39,889 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,889 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:39,890 ^~~~~~~~~~~ 2022-12-14T11:42:39,890 P7_PROFILE 2022-12-14T11:42:39,892 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,892 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:39,893 ^~~~~~~~~~~ 2022-12-14T11:42:39,894 P7_PROFILE 2022-12-14T11:42:39,896 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,896 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:39,897 ^~~~~~~~~~~ 2022-12-14T11:42:39,902 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,903 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:39,903 ^~~~~~~~~~~ 2022-12-14T11:42:39,904 P7_PROFILE 2022-12-14T11:42:39,905 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,906 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:39,907 ^~~~~~~~~~~ 2022-12-14T11:42:39,907 P7_PROFILE 2022-12-14T11:42:39,909 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,910 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,911 ^~~~~~~~~~~ 2022-12-14T11:42:39,911 P7_PROFILE 2022-12-14T11:42:39,913 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,921 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,922 ^~~~~~ 2022-12-14T11:42:39,922 P7_GMX 2022-12-14T11:42:39,923 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,923 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,924 ^~~~~~ 2022-12-14T11:42:39,924 P7_GMX 2022-12-14T11:42:39,925 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,926 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,926 ^~~~~~ 2022-12-14T11:42:39,927 P7_GMX 2022-12-14T11:42:39,928 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:39,929 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:39,929 ^~~~~~ 2022-12-14T11:42:39,930 P7_GMX 2022-12-14T11:42:39,931 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,932 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:39,932 ^~~~~~~~~~~ 2022-12-14T11:42:39,933 P7_PROFILE 2022-12-14T11:42:39,934 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,935 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:39,935 ^~~~~~~~~~~ 2022-12-14T11:42:39,936 P7_PROFILE 2022-12-14T11:42:39,936 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,937 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:39,938 ^~~~~~~~~~~ 2022-12-14T11:42:39,939 P7_PROFILE 2022-12-14T11:42:39,939 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,940 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:39,940 ^~~~~~~~~~~ 2022-12-14T11:42:39,941 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:39,942 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:39,943 ^~~~~~~~~~~ 2022-12-14T11:42:39,944 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,944 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:39,945 ^~~~~~~~~~~ 2022-12-14T11:42:39,945 P7_PROFILE 2022-12-14T11:42:39,945 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,946 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:39,946 ^~~~~~~~~~~ 2022-12-14T11:42:39,947 P7_PROFILE 2022-12-14T11:42:39,952 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:39,953 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:39,953 ^~~~~~~~~~~ 2022-12-14T11:42:39,954 P7_PROFILE 2022-12-14T11:42:40,007 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-14T11:42:40,007 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:40,008 #error "No vector implementation enabled" 2022-12-14T11:42:40,008 ^~~~~ 2022-12-14T11:42:40,009 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,010 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:40,010 ^~~~~~ 2022-12-14T11:42:40,011 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,011 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:40,012 ^~~~~~ 2022-12-14T11:42:40,012 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,013 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:40,014 ^~~~~~ 2022-12-14T11:42:40,014 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,015 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:40,016 ^~~~~~ 2022-12-14T11:42:40,016 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-14T11:42:40,023 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-14T11:42:40,024 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,025 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:40,025 ^~~~~~~~~~~ 2022-12-14T11:42:40,026 P7_PROFILE 2022-12-14T11:42:40,026 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,026 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:40,027 ^~~~~~~~~~~ 2022-12-14T11:42:40,027 P7_PROFILE 2022-12-14T11:42:40,028 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,028 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:40,029 ^~~~~~~~~~~ 2022-12-14T11:42:40,029 P7_PROFILE 2022-12-14T11:42:40,029 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,030 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:40,030 ^~~~~~~~~~~ 2022-12-14T11:42:40,031 P7_PROFILE 2022-12-14T11:42:40,031 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,032 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:40,044 ^~~~~~~~~~~ 2022-12-14T11:42:40,044 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,045 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:40,046 ^~~~~~~~~~~ 2022-12-14T11:42:40,047 P7_PROFILE 2022-12-14T11:42:40,047 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,048 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:40,048 ^~~~~~~~~~~ 2022-12-14T11:42:40,049 P7_PROFILE 2022-12-14T11:42:40,050 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,051 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,051 ^~~~~~~~~~~ 2022-12-14T11:42:40,052 P7_PROFILE 2022-12-14T11:42:40,053 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,064 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,064 ^~~~~~ 2022-12-14T11:42:40,065 P7_GMX 2022-12-14T11:42:40,065 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,066 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,066 ^~~~~~ 2022-12-14T11:42:40,067 P7_GMX 2022-12-14T11:42:40,068 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,069 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,069 ^~~~~~ 2022-12-14T11:42:40,070 P7_GMX 2022-12-14T11:42:40,070 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,071 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,072 ^~~~~~ 2022-12-14T11:42:40,072 P7_GMX 2022-12-14T11:42:40,080 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,081 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:40,081 ^~~~~~~~~~~ 2022-12-14T11:42:40,081 P7_PROFILE 2022-12-14T11:42:40,082 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,083 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:40,083 ^~~~~~~~~~~ 2022-12-14T11:42:40,084 P7_PROFILE 2022-12-14T11:42:40,085 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,085 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:40,085 ^~~~~~~~~~~ 2022-12-14T11:42:40,086 P7_PROFILE 2022-12-14T11:42:40,086 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,087 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:40,087 ^~~~~~~~~~~ 2022-12-14T11:42:40,088 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,088 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:40,089 ^~~~~~~~~~~ 2022-12-14T11:42:40,090 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,090 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:40,091 ^~~~~~~~~~~ 2022-12-14T11:42:40,091 P7_PROFILE 2022-12-14T11:42:40,092 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,092 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:40,093 ^~~~~~~~~~~ 2022-12-14T11:42:40,093 P7_PROFILE 2022-12-14T11:42:40,094 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,094 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:40,095 ^~~~~~~~~~~ 2022-12-14T11:42:40,095 P7_PROFILE 2022-12-14T11:42:40,096 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-14T11:42:40,096 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,097 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-14T11:42:40,097 ^~~~~~~~~~~ 2022-12-14T11:42:40,098 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-14T11:42:40,098 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,099 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-14T11:42:40,099 ^~~~~~~~~~~ 2022-12-14T11:42:40,100 P7_PROFILE 2022-12-14T11:42:40,100 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-14T11:42:40,100 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,101 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-14T11:42:40,101 ^~~~~~~~~~~ 2022-12-14T11:42:40,102 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-14T11:42:40,103 if ( size <= 0 ) { \ 2022-12-14T11:42:40,103 ^~~~ 2022-12-14T11:42:40,104 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-14T11:42:40,104 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-14T11:42:40,105 ^~~~~~~~~~~ 2022-12-14T11:42:40,105 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-14T11:42:40,106 if ( size <= 0 ) { \ 2022-12-14T11:42:40,106 ^~~~ 2022-12-14T11:42:40,107 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-14T11:42:40,107 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-14T11:42:40,107 ^ 2022-12-14T11:42:40,108 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-14T11:42:40,108 if ( size <= 0 ) { \ 2022-12-14T11:42:40,109 ^~~~ 2022-12-14T11:42:40,109 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-14T11:42:40,109 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-14T11:42:40,110 ^ 2022-12-14T11:42:40,111 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-14T11:42:40,111 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-14T11:42:40,112 ^~~~ 2022-12-14T11:42:40,112 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-14T11:42:40,113 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-14T11:42:40,113 ^ 2022-12-14T11:42:40,114 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-14T11:42:40,114 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-14T11:42:40,115 ^~~~ 2022-12-14T11:42:40,115 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-14T11:42:40,116 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-14T11:42:40,116 ^~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:40,117 p7_profile_Reuse 2022-12-14T11:42:40,118 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-14T11:42:40,118 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-14T11:42:40,119 ^~~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:40,119 p7_profile_Reuse 2022-12-14T11:42:40,120 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-14T11:42:40,121 if (om) p7_oprofile_Destroy(om); 2022-12-14T11:42:40,121 ^~~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:40,122 p7_profile_Destroy 2022-12-14T11:42:40,124 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-14T11:42:40,124 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,125 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-14T11:42:40,126 ^~~~~~~~~~~ 2022-12-14T11:42:40,126 P7_PROFILE 2022-12-14T11:42:40,127 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-14T11:42:40,128 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-14T11:42:40,128 ^ 2022-12-14T11:42:40,129 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,130 for (i = 0; i < cache->n; i++) 2022-12-14T11:42:40,130 ^ 2022-12-14T11:42:40,131 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-14T11:42:40,131 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-14T11:42:40,132 ^~~~~~~~~~~~~~~~~~ 2022-12-14T11:42:40,132 p7_profile_Sizeof 2022-12-14T11:42:40,133 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-14T11:42:40,133 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,134 P7_OPROFILE *om; 2022-12-14T11:42:40,135 ^~~~~~~~~~~ 2022-12-14T11:42:40,136 P7_PROFILE 2022-12-14T11:42:40,137 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,137 for (i = 0; i < cache->n; i++) 2022-12-14T11:42:40,138 ^ 2022-12-14T11:42:40,139 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-14T11:42:40,139 if (om->name) free(om->name); 2022-12-14T11:42:40,139 ^~ 2022-12-14T11:42:40,140 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-14T11:42:40,140 if (om->name) free(om->name); 2022-12-14T11:42:40,141 ^~ 2022-12-14T11:42:40,141 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-14T11:42:40,142 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-14T11:42:40,142 ^~ 2022-12-14T11:42:40,143 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-14T11:42:40,143 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,144 for (i = 0; i < cache->n; i++) 2022-12-14T11:42:40,145 ^ 2022-12-14T11:42:40,384 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-14T11:42:40,385 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:40,386 #error "No vector implementation enabled" 2022-12-14T11:42:40,386 ^~~~~ 2022-12-14T11:42:40,388 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,388 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:40,389 ^~~~~~ 2022-12-14T11:42:40,390 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,390 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:40,390 ^~~~~~ 2022-12-14T11:42:40,391 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,392 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:40,392 ^~~~~~ 2022-12-14T11:42:40,393 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,394 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:40,394 ^~~~~~ 2022-12-14T11:42:40,395 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,396 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:40,397 ^~~~~~~~~~~ 2022-12-14T11:42:40,397 P7_PROFILE 2022-12-14T11:42:40,399 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,400 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:40,401 ^~~~~~~~~~~ 2022-12-14T11:42:40,401 P7_PROFILE 2022-12-14T11:42:40,403 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,404 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:40,404 ^~~~~~~~~~~ 2022-12-14T11:42:40,405 P7_PROFILE 2022-12-14T11:42:40,406 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,407 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:40,407 ^~~~~~~~~~~ 2022-12-14T11:42:40,408 P7_PROFILE 2022-12-14T11:42:40,409 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-14T11:42:40,410 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:40,410 #error "No vector implementation enabled" 2022-12-14T11:42:40,411 ^~~~~ 2022-12-14T11:42:40,411 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,412 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:40,412 ^~~~~~~~~~~ 2022-12-14T11:42:40,413 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,414 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:40,415 ^~~~~~ 2022-12-14T11:42:40,415 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,416 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:40,416 ^~~~~~ 2022-12-14T11:42:40,417 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,418 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:40,419 ^~~~~~ 2022-12-14T11:42:40,419 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,420 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:40,421 ^~~~~~ 2022-12-14T11:42:40,422 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,423 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:40,424 ^~~~~~~~~~~ 2022-12-14T11:42:40,425 P7_PROFILE 2022-12-14T11:42:40,425 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,426 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:40,427 ^~~~~~~~~~~ 2022-12-14T11:42:40,428 P7_PROFILE 2022-12-14T11:42:40,429 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,429 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:40,430 ^~~~~~~~~~~ 2022-12-14T11:42:40,431 P7_PROFILE 2022-12-14T11:42:40,432 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,432 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:40,433 ^~~~~~~~~~~ 2022-12-14T11:42:40,433 P7_PROFILE 2022-12-14T11:42:40,434 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,435 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,435 ^~~~~~~~~~~ 2022-12-14T11:42:40,436 P7_PROFILE 2022-12-14T11:42:40,436 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,437 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:40,438 ^~~~~~~~~~~ 2022-12-14T11:42:40,439 P7_PROFILE 2022-12-14T11:42:40,439 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,440 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,441 ^~~~~~ 2022-12-14T11:42:40,441 P7_GMX 2022-12-14T11:42:40,442 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,442 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:40,443 ^~~~~~~~~~~ 2022-12-14T11:42:40,443 P7_PROFILE 2022-12-14T11:42:40,445 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,445 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,446 ^~~~~~ 2022-12-14T11:42:40,447 P7_GMX 2022-12-14T11:42:40,447 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,448 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:40,449 ^~~~~~~~~~~ 2022-12-14T11:42:40,450 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,451 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,451 ^~~~~~ 2022-12-14T11:42:40,452 P7_GMX 2022-12-14T11:42:40,453 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,454 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,454 ^~~~~~ 2022-12-14T11:42:40,455 P7_GMX 2022-12-14T11:42:40,456 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,456 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:40,457 ^~~~~~~~~~~ 2022-12-14T11:42:40,457 P7_PROFILE 2022-12-14T11:42:40,459 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,459 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:40,460 ^~~~~~~~~~~ 2022-12-14T11:42:40,460 P7_PROFILE 2022-12-14T11:42:40,461 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,462 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:40,463 ^~~~~~~~~~~ 2022-12-14T11:42:40,464 P7_PROFILE 2022-12-14T11:42:40,464 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,465 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,466 ^~~~~~~~~~~ 2022-12-14T11:42:40,466 P7_PROFILE 2022-12-14T11:42:40,467 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,467 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:40,468 ^~~~~~~~~~~ 2022-12-14T11:42:40,468 P7_PROFILE 2022-12-14T11:42:40,469 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,470 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,471 ^~~~~~ 2022-12-14T11:42:40,472 P7_GMX 2022-12-14T11:42:40,473 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-14T11:42:40,474 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-14T11:42:40,474 #error "No vector implementation enabled" 2022-12-14T11:42:40,475 ^~~~~ 2022-12-14T11:42:40,476 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,476 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:40,477 ^~~~~~~~~~~ 2022-12-14T11:42:40,477 P7_PROFILE 2022-12-14T11:42:40,478 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,479 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:40,479 ^~~~~~~~~~~ 2022-12-14T11:42:40,479 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,480 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:40,480 ^~~~~~~~~~~ 2022-12-14T11:42:40,481 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,481 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,482 ^~~~~~ 2022-12-14T11:42:40,482 P7_GMX 2022-12-14T11:42:40,483 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,484 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-14T11:42:40,485 ^~~~~~ 2022-12-14T11:42:40,486 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,486 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-14T11:42:40,487 ^~~~~~ 2022-12-14T11:42:40,488 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,489 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-14T11:42:40,489 ^~~~~~ 2022-12-14T11:42:40,490 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-14T11:42:40,490 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-14T11:42:40,490 ^~~~~~ 2022-12-14T11:42:40,491 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,492 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:40,493 ^~~~~~~~~~~ 2022-12-14T11:42:40,493 P7_PROFILE 2022-12-14T11:42:40,494 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,495 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,496 ^~~~~~ 2022-12-14T11:42:40,497 P7_GMX 2022-12-14T11:42:40,497 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,498 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:40,498 ^~~~~~~~~~~ 2022-12-14T11:42:40,499 P7_PROFILE 2022-12-14T11:42:40,500 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,500 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-14T11:42:40,501 ^~~~~~~~~~~ 2022-12-14T11:42:40,501 P7_PROFILE 2022-12-14T11:42:40,502 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,503 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,503 ^~~~~~ 2022-12-14T11:42:40,504 P7_GMX 2022-12-14T11:42:40,504 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,505 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-14T11:42:40,506 ^~~~~~~~~~~ 2022-12-14T11:42:40,506 P7_PROFILE 2022-12-14T11:42:40,507 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,508 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:40,509 ^~~~~~~~~~~ 2022-12-14T11:42:40,510 P7_PROFILE 2022-12-14T11:42:40,511 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,511 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-14T11:42:40,512 ^~~~~~~~~~~ 2022-12-14T11:42:40,513 P7_PROFILE 2022-12-14T11:42:40,514 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,514 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:40,515 ^~~~~~~~~~~ 2022-12-14T11:42:40,515 P7_PROFILE 2022-12-14T11:42:40,516 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,517 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:40,517 ^~~~~~~~~~~ 2022-12-14T11:42:40,518 P7_PROFILE 2022-12-14T11:42:40,518 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,519 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-14T11:42:40,519 ^~~~~~~~~~~ 2022-12-14T11:42:40,520 P7_PROFILE 2022-12-14T11:42:40,521 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,522 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:40,522 ^~~~~~~~~~~ 2022-12-14T11:42:40,523 P7_PROFILE 2022-12-14T11:42:40,523 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,524 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:40,524 ^~~~~~~~~~~ 2022-12-14T11:42:40,526 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,527 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-14T11:42:40,527 ^~~~~~~~~~~ 2022-12-14T11:42:40,528 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,529 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:40,529 ^~~~~~~~~~~ 2022-12-14T11:42:40,530 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,530 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:40,531 ^~~~~~~~~~~ 2022-12-14T11:42:40,532 P7_PROFILE 2022-12-14T11:42:40,532 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,532 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-14T11:42:40,533 ^~~~~~~~~~~ 2022-12-14T11:42:40,536 P7_PROFILE 2022-12-14T11:42:40,537 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,537 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:40,538 ^~~~~~~~~~~ 2022-12-14T11:42:40,538 P7_PROFILE 2022-12-14T11:42:40,539 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,539 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-14T11:42:40,540 ^~~~~~~~~~~ 2022-12-14T11:42:40,540 P7_PROFILE 2022-12-14T11:42:40,540 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,541 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,541 ^~~~~~~~~~~ 2022-12-14T11:42:40,542 P7_PROFILE 2022-12-14T11:42:40,542 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,543 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:40,543 ^~~~~~~~~~~ 2022-12-14T11:42:40,544 P7_PROFILE 2022-12-14T11:42:40,544 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,544 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,545 ^~~~~~ 2022-12-14T11:42:40,545 P7_GMX 2022-12-14T11:42:40,545 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,546 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,546 ^~~~~~ 2022-12-14T11:42:40,547 P7_GMX 2022-12-14T11:42:40,547 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,547 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,548 ^~~~~~ 2022-12-14T11:42:40,548 P7_GMX 2022-12-14T11:42:40,549 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-14T11:42:40,549 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-14T11:42:40,549 ^~~~~~ 2022-12-14T11:42:40,550 P7_GMX 2022-12-14T11:42:40,550 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,550 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-14T11:42:40,551 ^~~~~~~~~~~ 2022-12-14T11:42:40,551 P7_PROFILE 2022-12-14T11:42:40,552 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,552 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-14T11:42:40,552 ^~~~~~~~~~~ 2022-12-14T11:42:40,553 P7_PROFILE 2022-12-14T11:42:40,553 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,554 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-14T11:42:40,554 ^~~~~~~~~~~ 2022-12-14T11:42:40,554 P7_PROFILE 2022-12-14T11:42:40,555 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,555 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-14T11:42:40,556 ^~~~~~~~~~~ 2022-12-14T11:42:40,556 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-14T11:42:40,556 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-14T11:42:40,557 ^~~~~~~~~~~ 2022-12-14T11:42:40,557 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,558 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-14T11:42:40,558 ^~~~~~~~~~~ 2022-12-14T11:42:40,558 P7_PROFILE 2022-12-14T11:42:40,559 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,559 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-14T11:42:40,559 ^~~~~~~~~~~ 2022-12-14T11:42:40,560 P7_PROFILE 2022-12-14T11:42:40,560 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-14T11:42:40,561 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-14T11:42:40,561 ^~~~~~~~~~~ 2022-12-14T11:42:40,561 P7_PROFILE 2022-12-14T11:42:40,562 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-14T11:42:40,562 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,563 if (ranges[lo].lower > end) return -1; 2022-12-14T11:42:40,563 ^ 2022-12-14T11:42:40,564 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,564 if (ranges[hi].upper < start) return -1; 2022-12-14T11:42:40,565 ^ 2022-12-14T11:42:40,565 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,565 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-14T11:42:40,566 ^ 2022-12-14T11:42:40,566 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,567 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-14T11:42:40,567 ^~ 2022-12-14T11:42:40,567 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,568 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-14T11:42:40,568 ^~ 2022-12-14T11:42:40,568 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,569 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-14T11:42:40,569 ^~ 2022-12-14T11:42:40,570 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,570 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-14T11:42:40,570 ^~ 2022-12-14T11:42:40,571 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-14T11:42:40,571 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-14T11:42:40,571 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-14T11:42:40,572 ^~ 2022-12-14T11:42:40,572 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,572 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-14T11:42:40,573 ^~ 2022-12-14T11:42:40,573 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-14T11:42:40,574 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,574 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:40,574 ^ 2022-12-14T11:42:40,575 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:40,575 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-14T11:42:40,576 ^~~~~~~ 2022-12-14T11:42:40,576 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:40,576 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-14T11:42:40,577 ^~~ 2022-12-14T11:42:40,577 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-14T11:42:40,577 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-14T11:42:40,578 ^~~~~~~ 2022-12-14T11:42:40,578 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,579 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-14T11:42:40,579 ^ 2022-12-14T11:42:40,579 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-14T11:42:40,580 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-14T11:42:40,580 ^~~~~~~ 2022-12-14T11:42:40,580 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-14T11:42:40,581 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-14T11:42:40,581 ^~~ 2022-12-14T11:42:40,582 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-14T11:42:40,582 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-14T11:42:40,582 ^~~~~~~ 2022-12-14T11:42:40,583 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,583 for (j= start; j<=end; j++) 2022-12-14T11:42:40,584 ^~ 2022-12-14T11:42:40,584 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-14T11:42:40,584 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-14T11:42:40,585 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-14T11:42:40,585 ^~ 2022-12-14T11:42:40,586 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-14T11:42:40,586 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-14T11:42:40,586 ^~ 2022-12-14T11:42:40,587 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-14T11:42:40,587 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,587 for (i=0; iseq_count; i++) { 2022-12-14T11:42:40,588 ^ 2022-12-14T11:42:40,588 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,588 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-14T11:42:40,589 ^~ 2022-12-14T11:42:40,589 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,590 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-14T11:42:40,590 ^~ 2022-12-14T11:42:40,590 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,591 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-14T11:42:40,591 ^~ 2022-12-14T11:42:40,592 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-14T11:42:40,593 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-14T11:42:40,593 ^~ 2022-12-14T11:42:40,594 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,595 for (i=0; iambig_list->count; i++) { 2022-12-14T11:42:40,595 ^ 2022-12-14T11:42:40,596 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,596 for (i=0; iseq_count; i++) 2022-12-14T11:42:40,596 ^ 2022-12-14T11:42:40,597 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-14T11:42:40,597 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-14T11:42:40,598 for (i=0; iseq_count; i++) { 2022-12-14T11:42:40,598 ^ 2022-12-14T11:42:40,732 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-14T11:42:40,732 !! 2022-12-14T11:42:40,734 ############################ 2022-12-14T11:42:40,734 # Package would be ignored # 2022-12-14T11:42:40,734 ############################ 2022-12-14T11:42:40,735 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-14T11:42:40,735 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:42:40,736 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-14T11:42:40,736 because it may contain data files, but this behavior is likely to change 2022-12-14T11:42:40,736 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:42:40,737 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-14T11:42:40,737 the `packages` configuration field or the proper discovery methods 2022-12-14T11:42:40,737 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:42:40,738 instead of `find_packages(...)`/`find:`). 2022-12-14T11:42:40,738 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:42:40,739 documentation page. 2022-12-14T11:42:40,740 !! 2022-12-14T11:42:40,740 check.warn(importable) 2022-12-14T11:42:40,741 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-14T11:42:40,741 !! 2022-12-14T11:42:40,742 ############################ 2022-12-14T11:42:40,742 # Package would be ignored # 2022-12-14T11:42:40,742 ############################ 2022-12-14T11:42:40,743 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-14T11:42:40,743 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:42:40,744 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-14T11:42:40,744 because it may contain data files, but this behavior is likely to change 2022-12-14T11:42:40,744 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:42:40,745 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-14T11:42:40,745 the `packages` configuration field or the proper discovery methods 2022-12-14T11:42:40,746 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:42:40,746 instead of `find_packages(...)`/`find:`). 2022-12-14T11:42:40,747 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:42:40,747 documentation page. 2022-12-14T11:42:40,748 !! 2022-12-14T11:42:40,748 check.warn(importable) 2022-12-14T11:42:40,749 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-14T11:42:40,749 !! 2022-12-14T11:42:40,750 ############################ 2022-12-14T11:42:40,751 # Package would be ignored # 2022-12-14T11:42:40,751 ############################ 2022-12-14T11:42:40,752 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-14T11:42:40,752 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:42:40,753 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-14T11:42:40,754 because it may contain data files, but this behavior is likely to change 2022-12-14T11:42:40,754 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:42:40,755 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-14T11:42:40,756 the `packages` configuration field or the proper discovery methods 2022-12-14T11:42:40,756 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:42:40,756 instead of `find_packages(...)`/`find:`). 2022-12-14T11:42:40,757 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:42:40,758 documentation page. 2022-12-14T11:42:40,759 !! 2022-12-14T11:42:40,760 check.warn(importable) 2022-12-14T11:42:40,760 /tmp/pip-build-env-_lqu4dhe/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-14T11:42:40,760 !! 2022-12-14T11:42:40,762 ############################ 2022-12-14T11:42:40,762 # Package would be ignored # 2022-12-14T11:42:40,763 ############################ 2022-12-14T11:42:40,763 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-14T11:42:40,764 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T11:42:40,764 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-14T11:42:40,765 because it may contain data files, but this behavior is likely to change 2022-12-14T11:42:40,765 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T11:42:40,766 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-14T11:42:40,767 the `packages` configuration field or the proper discovery methods 2022-12-14T11:42:40,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T11:42:40,767 instead of `find_packages(...)`/`find:`). 2022-12-14T11:42:40,768 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T11:42:40,769 documentation page. 2022-12-14T11:42:40,770 !! 2022-12-14T11:42:40,771 check.warn(importable) 2022-12-14T11:42:40,771 checking whether can be included... yes 2022-12-14T11:42:40,771 checking whether can be included... yes 2022-12-14T11:42:40,772 checking whether can be included... yes 2022-12-14T11:42:40,772 checking whether can be included... yes 2022-12-14T11:42:40,772 checking whether can be included... yes 2022-12-14T11:42:40,773 checking whether can be included... yes 2022-12-14T11:42:40,773 checking whether can be included... yes 2022-12-14T11:42:40,774 checking whether can be included... yes 2022-12-14T11:42:40,774 checking whether can be included... yes 2022-12-14T11:42:40,774 checking whether can be included... yes 2022-12-14T11:42:40,775 checking whether can be included... yes 2022-12-14T11:42:40,775 checking whether can be included... yes 2022-12-14T11:42:40,776 checking whether can be included... yes 2022-12-14T11:42:40,776 checking whether function 'aligned_alloc' is available... yes 2022-12-14T11:42:40,776 checking whether function 'erfc' is available... yes 2022-12-14T11:42:40,777 checking whether function 'getpid' is available... yes 2022-12-14T11:42:40,777 checking whether function '_mm_malloc' is available... no 2022-12-14T11:42:40,777 checking whether function 'popen' is available... yes 2022-12-14T11:42:40,778 checking whether function 'posix_memalign' is available... yes 2022-12-14T11:42:40,778 checking whether function 'strcasecmp' is available... yes 2022-12-14T11:42:40,779 checking whether function 'strsep' is available... yes 2022-12-14T11:42:40,779 checking whether function 'sysconf' is available... yes 2022-12-14T11:42:40,779 checking whether function 'sysctl' is available... yes 2022-12-14T11:42:40,780 checking whether function 'times' is available... yes 2022-12-14T11:42:40,780 checking whether function 'fseeko' is available... yes 2022-12-14T11:42:40,781 checking whether can be included... yes 2022-12-14T11:42:40,781 checking whether can be included... yes 2022-12-14T11:42:40,781 checking whether can be included... yes 2022-12-14T11:42:40,782 checking whether can be included... yes 2022-12-14T11:42:40,782 checking whether can be included... yes 2022-12-14T11:42:40,783 checking whether can be included... yes 2022-12-14T11:42:40,784 checking whether can be included... yes 2022-12-14T11:42:40,784 checking whether can be included... yes 2022-12-14T11:42:40,784 checking whether function 'mkstemp' is available... yes 2022-12-14T11:42:40,785 checking whether function 'popen' is available... yes 2022-12-14T11:42:40,785 checking whether function 'putenv' is available... yes 2022-12-14T11:42:40,786 checking whether function 'strcasecmp' is available... yes 2022-12-14T11:42:40,786 checking whether function 'strsep' is available... yes 2022-12-14T11:42:40,787 checking whether function 'times' is available... yes 2022-12-14T11:42:40,787 checking whether function 'getpid' is available... yes 2022-12-14T11:42:40,788 checking whether function 'sysctl' is available... yes 2022-12-14T11:42:40,788 checking whether function 'sysconf' is available... yes 2022-12-14T11:42:40,789 checking whether function 'getcwd' is available... yes 2022-12-14T11:42:40,789 checking whether function 'chmod' is available... yes 2022-12-14T11:42:40,789 checking whether function 'stat' is available... yes 2022-12-14T11:42:40,790 checking whether function 'fstat' is available... yes 2022-12-14T11:42:40,790 checking whether function 'erfc' is available... yes 2022-12-14T11:42:40,791 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-14T11:42:41,004 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-14T11:42:41,055 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmps3_e_nle[/] 2022-12-14T11:42:41,055 [bold magenta]cwd[/]: /tmp/pip-wheel-8_ec7q5r/pyhmmer_1fe513cf4b514accaad9bc287214de41 2022-12-14T11:42:41,056 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-14T11:42:41,061 ERROR: Failed building wheel for pyhmmer 2022-12-14T11:42:41,066 Failed to build pyhmmer 2022-12-14T11:42:41,068 ERROR: Failed to build one or more wheels 2022-12-14T11:42:41,071 Exception information: 2022-12-14T11:42:41,071 Traceback (most recent call last): 2022-12-14T11:42:41,071 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-14T11:42:41,071 status = run_func(*args) 2022-12-14T11:42:41,071 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-14T11:42:41,071 return func(self, options, args) 2022-12-14T11:42:41,071 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-14T11:42:41,071 raise CommandError("Failed to build one or more wheels") 2022-12-14T11:42:41,071 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-14T11:42:41,080 Removed build tracker: '/tmp/pip-build-tracker-lujtybnm'