2022-12-14T17:45:00,002 Created temporary directory: /tmp/pip-ephem-wheel-cache-mbo3fqzb 2022-12-14T17:45:00,007 Created temporary directory: /tmp/pip-build-tracker-htyf5l99 2022-12-14T17:45:00,007 Initialized build tracking at /tmp/pip-build-tracker-htyf5l99 2022-12-14T17:45:00,008 Created build tracker: /tmp/pip-build-tracker-htyf5l99 2022-12-14T17:45:00,008 Entered build tracker: /tmp/pip-build-tracker-htyf5l99 2022-12-14T17:45:00,010 Created temporary directory: /tmp/pip-wheel-biqx_c06 2022-12-14T17:45:00,017 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T17:45:00,023 Created temporary directory: /tmp/pip-ephem-wheel-cache-k14unsi9 2022-12-14T17:45:00,073 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T17:45:00,081 2 location(s) to search for versions of vermouth: 2022-12-14T17:45:00,081 * https://pypi.org/simple/vermouth/ 2022-12-14T17:45:00,081 * https://www.piwheels.org/simple/vermouth/ 2022-12-14T17:45:00,082 Fetching project page and analyzing links: https://pypi.org/simple/vermouth/ 2022-12-14T17:45:00,083 Getting page https://pypi.org/simple/vermouth/ 2022-12-14T17:45:00,086 Found index url https://pypi.org/simple 2022-12-14T17:45:00,271 Fetched page https://pypi.org/simple/vermouth/ as application/vnd.pypi.simple.v1+json 2022-12-14T17:45:00,283 Found link https://files.pythonhosted.org/packages/c6/b1/274b76764e2ebe0b190708befe8a588d5b645f096609f68723139c80fdee/vermouth-0.1.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.1.0 2022-12-14T17:45:00,284 Found link https://files.pythonhosted.org/packages/ee/d9/cc8ed35bf50924fa9bf4d450c620f6f0f45254b00b30c2fe1a7f76b00368/vermouth-0.2.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.2.0 2022-12-14T17:45:00,285 Found link https://files.pythonhosted.org/packages/c7/6b/bf90515318a6a1c4e2994db43469e52e638d16400068dfcb7d478e9b7c1a/vermouth-0.3.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.0 2022-12-14T17:45:00,286 Found link https://files.pythonhosted.org/packages/b2/d5/07402db0608b5e2bdfbf3f8858ccfd2f454f382f50e4a6940b763426cbea/vermouth-0.3.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.1 2022-12-14T17:45:00,286 Found link https://files.pythonhosted.org/packages/bf/6e/b4e991b3fe595aca6a31cc0449c66b240f50edbf12ebfe80f0d0e592cd5e/vermouth-0.4.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.0 2022-12-14T17:45:00,287 Found link https://files.pythonhosted.org/packages/2c/72/107e8be40ef06f07a809105debbfb1278aceaee8c363189b9c09fe44f8a2/vermouth-0.4.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.1 2022-12-14T17:45:00,288 Found link https://files.pythonhosted.org/packages/d2/86/6cc920072226d0a6e5c0e0a28f85414722b023c66c3cccaaf3492ded2cba/vermouth-0.5.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.5.0 2022-12-14T17:45:00,288 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/ee/ff/589eae88b25a30d0b086231b459f2927ede30c9ef57e92b84a4d479775f2/vermouth-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,289 Found link https://files.pythonhosted.org/packages/de/df/6ec1631c808589b3eb5dfbb8e22df2803fde0750c30e6305148f14d72256/vermouth-0.6.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.0 2022-12-14T17:45:00,290 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/de/1f/a29254c72edc7bc749c16f3bf621baa85c6883567469ebcc068b6771abb4/vermouth-0.6.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,290 Found link https://files.pythonhosted.org/packages/f5/75/24a94d58fdd58770f2df5325d29034dbd0a072a0bd99905507a297dc3796/vermouth-0.6.1.dev1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.1.dev1 2022-12-14T17:45:00,291 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b8/87/07db5eba7bf97abf229dbf76ff759a877057bf94cffff0ded5909422d14a/vermouth-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,292 Found link https://files.pythonhosted.org/packages/94/1f/e6e57cdc03b6afb830671707bffbfccefd383b3efc9dbe086c1d9037c34d/vermouth-0.7.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.0 2022-12-14T17:45:00,292 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/18/d3/2998a0d56963a85358f7fe385adb3eb9d660c1ce771057008afd5cfd6901/vermouth-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,293 Found link https://files.pythonhosted.org/packages/43/0b/d6cd081c035a321c1149cd8625fad98d969d6413327bbde731f4d30c5e4f/vermouth-0.7.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.1 2022-12-14T17:45:00,293 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/3a/cb877fe0c178bce0e16ddda0c34fd57902248b07938e3cb72bc1c78bc0d1/vermouth-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,294 Found link https://files.pythonhosted.org/packages/56/a1/1e5a5d54a4d1aed5d50645e5adc4ad026636c1e837d56adce10a54463ad6/vermouth-0.7.2.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.2 2022-12-14T17:45:00,295 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/20/f41a35c1b011d730614adab6923c713a58b7731b28b6488e8190a009aec2/vermouth-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,295 Found link https://files.pythonhosted.org/packages/7d/78/12e0752ceab663c708253421692fbc1ee3b1184e1918e2fbc9b06f4f9097/vermouth-0.7.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.3 2022-12-14T17:45:00,296 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/52/34/e7b82dc063e327fc8f47ab01d2b27363ebd3778e8f45d90ec8ad38486480/vermouth-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,296 Found link https://files.pythonhosted.org/packages/1a/49/4e20bde1dbaab255a469c7944c1e6a767e7449e1dd5b20e3f2524083d6eb/vermouth-0.8.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.8.1 2022-12-14T17:45:00,297 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/7e/a1/549f337abec9f3a02d249895a849d3d500008e1d39beb38582c97654e949/vermouth-0.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-14T17:45:00,298 Found link https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.0 2022-12-14T17:45:00,299 Fetching project page and analyzing links: https://www.piwheels.org/simple/vermouth/ 2022-12-14T17:45:00,299 Getting page https://www.piwheels.org/simple/vermouth/ 2022-12-14T17:45:00,302 Found index url https://www.piwheels.org/simple 2022-12-14T17:45:00,533 Fetched page https://www.piwheels.org/simple/vermouth/ as text/html 2022-12-14T17:45:00,544 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.8.1-py2.py3-none-any.whl#sha256=f0c9d27ed8796568f7aa9dd2294d10d07fa0f27764ebc2d85ce2715ec2c6a5e5 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,545 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.3-py2.py3-none-any.whl#sha256=a151dce5369142ce6d19a3988e0a1746288f8f2fae07ba59c5e1547df88ad1e3 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,546 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.2-py2.py3-none-any.whl#sha256=229f973ded59ef7883ba4f6fbfa96540cdf40b1b961b12efdbe7d5cb81fac6a1 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,546 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.1-py2.py3-none-any.whl#sha256=fc70883831d576793246091cafc7b008f187bc4faf6a8e560307ab7481e832f2 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,547 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.0-py2.py3-none-any.whl#sha256=5fca42314e68189e5e41f8e4b1722a1b93e3522c211a4504fa1e329991804768 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,547 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.1.dev1-py2.py3-none-any.whl#sha256=40b89874779133125b2ceda6a869dfaee2f00ebbeb4eab86903eb35cf0f51102 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,548 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.0-py2.py3-none-any.whl#sha256=eacf3828c494728c7a206f78e8b3845eed24ca2f25b522c618260811f03231fe (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,549 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.5.0-py2.py3-none-any.whl#sha256=d2dcb086df80653b9602029af7363d8ba15a3660a9eed6f9d5c62f3156f231d2 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,549 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.1-py2.py3-none-any.whl#sha256=7b29e1249b460cbf99396d25d6b7898d394a4f354f06f4574240f9226aaf70de (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,550 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.0-py2.py3-none-any.whl#sha256=1e8e41f2ade8de1b613de4a5fba5a29828bbd23b449c1c6fc503ab0dd52aa61f (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,550 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.1-py2.py3-none-any.whl#sha256=3431b025e519118e06c5ccb19b7a28cbf5f40fc6029496521569f2647a0fab3a (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,551 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.0-py2.py3-none-any.whl#sha256=164322a4f376c6a503756677793912d937dfb6330f3973c9dc8fdb89eafa44e3 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,551 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.2.0-py2.py3-none-any.whl#sha256=bc59509223e3450150b291f42032d3cea874b0544820fe778507ccca510f03b5 (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,552 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.1.0-py2.py3-none-any.whl#sha256=28068403a9546c028aca0d749c0401d00d6aa1ec66f1cf8bb91f8e293294cc2e (from https://www.piwheels.org/simple/vermouth/) 2022-12-14T17:45:00,552 Skipping link: not a file: https://www.piwheels.org/simple/vermouth/ 2022-12-14T17:45:00,553 Skipping link: not a file: https://pypi.org/simple/vermouth/ 2022-12-14T17:45:00,594 Given no hashes to check 1 links for project 'vermouth': discarding no candidates 2022-12-14T17:45:00,624 Collecting vermouth==0.9.0 2022-12-14T17:45:00,629 Created temporary directory: /tmp/pip-unpack-ecnildk_ 2022-12-14T17:45:00,898 Downloading vermouth-0.9.0.tar.gz (2.4 MB) 2022-12-14T17:45:04,989 Added vermouth==0.9.0 from https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-htyf5l99' 2022-12-14T17:45:04,999 Created temporary directory: /tmp/pip-build-env-ikwnapuc 2022-12-14T17:45:05,011 Installing build dependencies: started 2022-12-14T17:45:05,013 Running command pip subprocess to install build dependencies 2022-12-14T17:45:07,694 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-14T17:45:08,486 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T17:45:08,539 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T17:45:09,418 Collecting wheel 2022-12-14T17:45:09,453 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-14T17:45:13,082 Collecting setuptools>=30.3.0 2022-12-14T17:45:13,350 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-14T17:45:13,942 Collecting pbr 2022-12-14T17:45:13,984 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.0-py2.py3-none-any.whl (112 kB) 2022-12-14T17:45:19,537 Installing collected packages: wheel, setuptools, pbr 2022-12-14T17:45:19,817 Creating /tmp/pip-build-env-ikwnapuc/overlay/bin 2022-12-14T17:45:19,821 changing mode of /tmp/pip-build-env-ikwnapuc/overlay/bin/wheel to 755 2022-12-14T17:45:25,273 changing mode of /tmp/pip-build-env-ikwnapuc/overlay/bin/pbr to 755 2022-12-14T17:45:25,309 Successfully installed pbr-5.11.0 setuptools-65.6.3 wheel-0.38.4 2022-12-14T17:45:25,341 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-14T17:45:25,342 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-14T17:45:25,787 Installing build dependencies: finished with status 'done' 2022-12-14T17:45:25,815 Getting requirements to build wheel: started 2022-12-14T17:45:25,817 Running command Getting requirements to build wheel 2022-12-14T17:45:27,788 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-14T17:45:27,789 % (opt, underscore_opt) 2022-12-14T17:45:27,790 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-14T17:45:27,790 % (opt, underscore_opt) 2022-12-14T17:45:27,791 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-14T17:45:27,791 % (opt, underscore_opt) 2022-12-14T17:45:27,792 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-14T17:45:27,792 % (opt, underscore_opt) 2022-12-14T17:45:27,980 Getting requirements to build wheel: finished with status 'done' 2022-12-14T17:45:28,007 Created temporary directory: /tmp/pip-modern-metadata-ydc0stdj 2022-12-14T17:45:28,014 Preparing metadata (pyproject.toml): started 2022-12-14T17:45:28,016 Running command Preparing metadata (pyproject.toml) 2022-12-14T17:45:30,206 running dist_info 2022-12-14T17:45:30,212 creating /tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info 2022-12-14T17:45:30,276 writing /tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/PKG-INFO 2022-12-14T17:45:30,284 writing dependency_links to /tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/dependency_links.txt 2022-12-14T17:45:30,289 writing requirements to /tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/requires.txt 2022-12-14T17:45:30,291 writing top-level names to /tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/top_level.txt 2022-12-14T17:45:30,293 [pbr] Processing SOURCES.txt 2022-12-14T17:45:30,294 writing manifest file '/tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/SOURCES.txt' 2022-12-14T17:45:30,842 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-12-14T17:45:30,843 EasyInstallDeprecationWarning, 2022-12-14T17:45:30,843 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-14T17:45:30,844 setuptools.SetuptoolsDeprecationWarning, 2022-12-14T17:45:30,844 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-14T17:45:30,844 % (opt, underscore_opt) 2022-12-14T17:45:30,845 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-14T17:45:30,845 % (opt, underscore_opt) 2022-12-14T17:45:30,845 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-14T17:45:30,846 % (opt, underscore_opt) 2022-12-14T17:45:30,846 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-14T17:45:30,846 % (opt, underscore_opt) 2022-12-14T17:45:30,846 warning: no files found matching 'AUTHORS' 2022-12-14T17:45:30,847 warning: no files found matching 'ChangeLog' 2022-12-14T17:45:30,847 warning: no previously-included files found matching '.gitignore' 2022-12-14T17:45:30,849 warning: no previously-included files found matching '.gitreview' 2022-12-14T17:45:30,853 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-12-14T17:45:31,064 adding license file 'LICENSE' 2022-12-14T17:45:31,120 writing manifest file '/tmp/pip-modern-metadata-ydc0stdj/vermouth.egg-info/SOURCES.txt' 2022-12-14T17:45:31,124 creating '/tmp/pip-modern-metadata-ydc0stdj/vermouth-0.9.0.dist-info' 2022-12-14T17:45:31,232 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-12-14T17:45:31,543 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-14T17:45:31,559 Source in /tmp/pip-wheel-biqx_c06/vermouth_43b8d31fc2ce4969ade3e00470bb229d has version 0.9.0, which satisfies requirement vermouth==0.9.0 from https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz 2022-12-14T17:45:31,561 Removed vermouth==0.9.0 from https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-htyf5l99' 2022-12-14T17:45:31,571 Created temporary directory: /tmp/pip-unpack-maq150jj 2022-12-14T17:45:31,572 Building wheels for collected packages: vermouth 2022-12-14T17:45:31,582 Created temporary directory: /tmp/pip-wheel-khpxezfw 2022-12-14T17:45:31,582 Destination directory: /tmp/pip-wheel-khpxezfw 2022-12-14T17:45:31,587 Building wheel for vermouth (pyproject.toml): started 2022-12-14T17:45:31,590 Running command Building wheel for vermouth (pyproject.toml) 2022-12-14T17:45:33,820 running bdist_wheel 2022-12-14T17:45:33,840 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-12-14T17:45:33,841 EasyInstallDeprecationWarning, 2022-12-14T17:45:33,841 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-14T17:45:33,841 % (opt, underscore_opt) 2022-12-14T17:45:33,842 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-14T17:45:33,842 % (opt, underscore_opt) 2022-12-14T17:45:33,842 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-14T17:45:33,843 % (opt, underscore_opt) 2022-12-14T17:45:33,843 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-14T17:45:33,843 % (opt, underscore_opt) 2022-12-14T17:45:33,844 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-12-14T17:45:33,876 running build 2022-12-14T17:45:33,877 running build_py 2022-12-14T17:45:33,896 creating build 2022-12-14T17:45:33,897 creating build/lib 2022-12-14T17:45:33,898 creating build/lib/vermouth 2022-12-14T17:45:33,899 creating build/lib/vermouth/tests 2022-12-14T17:45:33,901 creating build/lib/vermouth/tests/integration_tests 2022-12-14T17:45:33,903 copying vermouth/tests/integration_tests/__init__.py -> build/lib/vermouth/tests/integration_tests 2022-12-14T17:45:33,907 copying vermouth/tests/integration_tests/test_integration.py -> build/lib/vermouth/tests/integration_tests 2022-12-14T17:45:33,913 creating build/lib/vermouth/gmx 2022-12-14T17:45:33,915 copying vermouth/gmx/itp_read.py -> build/lib/vermouth/gmx 2022-12-14T17:45:33,920 copying vermouth/gmx/__init__.py -> build/lib/vermouth/gmx 2022-12-14T17:45:33,924 copying vermouth/gmx/itp.py -> build/lib/vermouth/gmx 2022-12-14T17:45:33,928 copying vermouth/gmx/gro.py -> build/lib/vermouth/gmx 2022-12-14T17:45:33,932 copying vermouth/gmx/rtp.py -> build/lib/vermouth/gmx 2022-12-14T17:45:33,943 copying vermouth/tests/test_tune_cystein_bridges.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,947 copying vermouth/tests/test_selectors.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,952 copying vermouth/tests/test_set_molecule_meta.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,955 copying vermouth/tests/test_ffinput.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,960 copying vermouth/tests/test_utils.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,964 copying vermouth/tests/test_average_beads.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,969 copying vermouth/tests/test_map_parser.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,974 copying vermouth/tests/test_ptm_detection.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,978 copying vermouth/tests/__init__.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,981 copying vermouth/tests/test_repair_graph.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,986 copying vermouth/tests/test_map_input.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,991 copying vermouth/tests/test_do_mapping.py -> build/lib/vermouth/tests 2022-12-14T17:45:33,996 copying vermouth/tests/helper_functions.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,000 copying vermouth/tests/datafiles.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,003 copying vermouth/tests/test_grappa.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,008 copying vermouth/tests/test_add_molecule_edges.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,012 copying vermouth/tests/test_itp_files.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,016 copying vermouth/tests/test_edge_tuning.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,022 copying vermouth/tests/test_logging.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,026 copying vermouth/tests/test_graph_utils.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,031 copying vermouth/tests/test_geometry.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,036 copying vermouth/tests/test_make_bonds.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,041 copying vermouth/tests/test_sort_molecule_atoms.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,045 copying vermouth/tests/test_mapping_integrative.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,050 copying vermouth/tests/test_dssp.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,056 copying vermouth/tests/molecule_strategies.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,060 copying vermouth/tests/test_ismags.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,065 copying vermouth/tests/test_annotate_mut_mod.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,070 copying vermouth/tests/test_forcefield.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,074 copying vermouth/tests/test_ff_files.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,080 copying vermouth/tests/test_apply_rubber_band.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,085 copying vermouth/tests/test_molecule.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,091 copying vermouth/tests/test_section_parser.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,095 copying vermouth/tests/test_go_vs_includes.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,099 copying vermouth/tests/test_links.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,103 copying vermouth/tests/test_name_moltype.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,107 copying vermouth/tests/test_version.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,111 copying vermouth/tests/test_file_writer.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,115 copying vermouth/tests/test_native_forcefield.py -> build/lib/vermouth/tests 2022-12-14T17:45:34,122 creating build/lib/vermouth/processors 2022-12-14T17:45:34,124 copying vermouth/processors/gro_reader.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,128 copying vermouth/processors/name_moltype.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,132 copying vermouth/processors/rename_modified_residues.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,135 copying vermouth/processors/add_molecule_edges.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,139 copying vermouth/processors/annotate_mut_mod.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,143 copying vermouth/processors/processor.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,147 copying vermouth/processors/go_vs_includes.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,151 copying vermouth/processors/tune_cystein_bridges.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,155 copying vermouth/processors/__init__.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,158 copying vermouth/processors/set_molecule_meta.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,162 copying vermouth/processors/sort_molecule_atoms.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,165 copying vermouth/processors/apply_rubber_band.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,170 copying vermouth/processors/do_mapping.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,176 copying vermouth/processors/merge_all_molecules.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,180 copying vermouth/processors/repair_graph.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,185 copying vermouth/processors/pdb_reader.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,188 copying vermouth/processors/attach_mass.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,192 copying vermouth/processors/merge_chains.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,195 copying vermouth/processors/make_bonds.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,200 copying vermouth/processors/quote.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,204 copying vermouth/processors/canonicalize_modifications.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,208 copying vermouth/processors/locate_charge_dummies.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,213 copying vermouth/processors/average_beads.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,217 copying vermouth/processors/apply_posres.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,220 copying vermouth/processors/do_links.py -> build/lib/vermouth/processors 2022-12-14T17:45:34,226 creating build/lib/vermouth/pdb 2022-12-14T17:45:34,228 copying vermouth/pdb/pdb.py -> build/lib/vermouth/pdb 2022-12-14T17:45:34,233 copying vermouth/pdb/__init__.py -> build/lib/vermouth/pdb 2022-12-14T17:45:34,240 copying vermouth/parser_utils.py -> build/lib/vermouth 2022-12-14T17:45:34,245 copying vermouth/map_parser.py -> build/lib/vermouth 2022-12-14T17:45:34,250 copying vermouth/__init__.py -> build/lib/vermouth 2022-12-14T17:45:34,253 copying vermouth/ismags.py -> build/lib/vermouth 2022-12-14T17:45:34,260 copying vermouth/utils.py -> build/lib/vermouth 2022-12-14T17:45:34,264 copying vermouth/log_helpers.py -> build/lib/vermouth 2022-12-14T17:45:34,269 copying vermouth/forcefield.py -> build/lib/vermouth 2022-12-14T17:45:34,273 copying vermouth/citation_parser.py -> build/lib/vermouth 2022-12-14T17:45:34,277 copying vermouth/selectors.py -> build/lib/vermouth 2022-12-14T17:45:34,282 copying vermouth/graph_utils.py -> build/lib/vermouth 2022-12-14T17:45:34,286 copying vermouth/edge_tuning.py -> build/lib/vermouth 2022-12-14T17:45:34,291 copying vermouth/truncating_formatter.py -> build/lib/vermouth 2022-12-14T17:45:34,295 copying vermouth/file_writer.py -> build/lib/vermouth 2022-12-14T17:45:34,300 copying vermouth/ffinput.py -> build/lib/vermouth 2022-12-14T17:45:34,306 copying vermouth/system.py -> build/lib/vermouth 2022-12-14T17:45:34,310 copying vermouth/map_input.py -> build/lib/vermouth 2022-12-14T17:45:34,316 copying vermouth/geometry.py -> build/lib/vermouth 2022-12-14T17:45:34,320 copying vermouth/molecule.py -> build/lib/vermouth 2022-12-14T17:45:34,330 creating build/lib/vermouth/dssp 2022-12-14T17:45:34,332 copying vermouth/dssp/dssp.py -> build/lib/vermouth/dssp 2022-12-14T17:45:34,337 copying vermouth/dssp/__init__.py -> build/lib/vermouth/dssp 2022-12-14T17:45:34,340 running egg_info 2022-12-14T17:45:34,410 writing vermouth.egg-info/PKG-INFO 2022-12-14T17:45:34,416 writing dependency_links to vermouth.egg-info/dependency_links.txt 2022-12-14T17:45:34,421 writing requirements to vermouth.egg-info/requires.txt 2022-12-14T17:45:34,423 writing top-level names to vermouth.egg-info/top_level.txt 2022-12-14T17:45:34,426 [pbr] Reusing existing SOURCES.txt 2022-12-14T17:45:34,595 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,595 !! 2022-12-14T17:45:34,596 ############################ 2022-12-14T17:45:34,596 # Package would be ignored # 2022-12-14T17:45:34,597 ############################ 2022-12-14T17:45:34,597 Python recognizes 'vermouth.data' as an importable package, 2022-12-14T17:45:34,597 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,598 'vermouth.data' has been automatically added to the distribution only 2022-12-14T17:45:34,598 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,599 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,599 Please make sure that 'vermouth.data' is included as a package by using 2022-12-14T17:45:34,599 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,600 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,600 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,601 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,601 documentation page. 2022-12-14T17:45:34,602 !! 2022-12-14T17:45:34,602 check.warn(importable) 2022-12-14T17:45:34,603 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.amber' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,603 !! 2022-12-14T17:45:34,604 ############################ 2022-12-14T17:45:34,604 # Package would be ignored # 2022-12-14T17:45:34,604 ############################ 2022-12-14T17:45:34,605 Python recognizes 'vermouth.data.force_fields.amber' as an importable package, 2022-12-14T17:45:34,605 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,606 'vermouth.data.force_fields.amber' has been automatically added to the distribution only 2022-12-14T17:45:34,606 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,606 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,607 Please make sure that 'vermouth.data.force_fields.amber' is included as a package by using 2022-12-14T17:45:34,607 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,608 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,608 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,609 documentation page. 2022-12-14T17:45:34,609 !! 2022-12-14T17:45:34,610 check.warn(importable) 2022-12-14T17:45:34,610 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.charmm' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,611 !! 2022-12-14T17:45:34,611 ############################ 2022-12-14T17:45:34,612 # Package would be ignored # 2022-12-14T17:45:34,612 ############################ 2022-12-14T17:45:34,612 Python recognizes 'vermouth.data.force_fields.charmm' as an importable package, 2022-12-14T17:45:34,613 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,613 'vermouth.data.force_fields.charmm' has been automatically added to the distribution only 2022-12-14T17:45:34,613 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,614 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,614 Please make sure that 'vermouth.data.force_fields.charmm' is included as a package by using 2022-12-14T17:45:34,615 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,615 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,616 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,616 documentation page. 2022-12-14T17:45:34,617 !! 2022-12-14T17:45:34,617 check.warn(importable) 2022-12-14T17:45:34,618 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn21' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,618 !! 2022-12-14T17:45:34,619 ############################ 2022-12-14T17:45:34,619 # Package would be ignored # 2022-12-14T17:45:34,620 ############################ 2022-12-14T17:45:34,620 Python recognizes 'vermouth.data.force_fields.elnedyn21' as an importable package, 2022-12-14T17:45:34,620 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,621 'vermouth.data.force_fields.elnedyn21' has been automatically added to the distribution only 2022-12-14T17:45:34,621 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,621 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,622 Please make sure that 'vermouth.data.force_fields.elnedyn21' is included as a package by using 2022-12-14T17:45:34,622 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,622 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,623 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,623 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,624 documentation page. 2022-12-14T17:45:34,624 !! 2022-12-14T17:45:34,625 check.warn(importable) 2022-12-14T17:45:34,625 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn22' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,626 !! 2022-12-14T17:45:34,626 ############################ 2022-12-14T17:45:34,627 # Package would be ignored # 2022-12-14T17:45:34,627 ############################ 2022-12-14T17:45:34,627 Python recognizes 'vermouth.data.force_fields.elnedyn22' as an importable package, 2022-12-14T17:45:34,628 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,628 'vermouth.data.force_fields.elnedyn22' has been automatically added to the distribution only 2022-12-14T17:45:34,628 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,629 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,629 Please make sure that 'vermouth.data.force_fields.elnedyn22' is included as a package by using 2022-12-14T17:45:34,630 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,630 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,630 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,631 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,631 documentation page. 2022-12-14T17:45:34,632 !! 2022-12-14T17:45:34,632 check.warn(importable) 2022-12-14T17:45:34,633 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn22p' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,633 !! 2022-12-14T17:45:34,634 ############################ 2022-12-14T17:45:34,634 # Package would be ignored # 2022-12-14T17:45:34,634 ############################ 2022-12-14T17:45:34,635 Python recognizes 'vermouth.data.force_fields.elnedyn22p' as an importable package, 2022-12-14T17:45:34,635 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,636 'vermouth.data.force_fields.elnedyn22p' has been automatically added to the distribution only 2022-12-14T17:45:34,636 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,636 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,637 Please make sure that 'vermouth.data.force_fields.elnedyn22p' is included as a package by using 2022-12-14T17:45:34,637 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,637 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,638 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,638 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,639 documentation page. 2022-12-14T17:45:34,639 !! 2022-12-14T17:45:34,640 check.warn(importable) 2022-12-14T17:45:34,640 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.gromos' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,641 !! 2022-12-14T17:45:34,641 ############################ 2022-12-14T17:45:34,642 # Package would be ignored # 2022-12-14T17:45:34,642 ############################ 2022-12-14T17:45:34,642 Python recognizes 'vermouth.data.force_fields.gromos' as an importable package, 2022-12-14T17:45:34,642 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,643 'vermouth.data.force_fields.gromos' has been automatically added to the distribution only 2022-12-14T17:45:34,643 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,644 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,644 Please make sure that 'vermouth.data.force_fields.gromos' is included as a package by using 2022-12-14T17:45:34,644 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,645 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,645 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,646 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,646 documentation page. 2022-12-14T17:45:34,647 !! 2022-12-14T17:45:34,647 check.warn(importable) 2022-12-14T17:45:34,648 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini22' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,648 !! 2022-12-14T17:45:34,649 ############################ 2022-12-14T17:45:34,649 # Package would be ignored # 2022-12-14T17:45:34,650 ############################ 2022-12-14T17:45:34,650 Python recognizes 'vermouth.data.force_fields.martini22' as an importable package, 2022-12-14T17:45:34,650 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,651 'vermouth.data.force_fields.martini22' has been automatically added to the distribution only 2022-12-14T17:45:34,651 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,651 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,652 Please make sure that 'vermouth.data.force_fields.martini22' is included as a package by using 2022-12-14T17:45:34,652 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,653 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,653 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,653 documentation page. 2022-12-14T17:45:34,654 !! 2022-12-14T17:45:34,655 check.warn(importable) 2022-12-14T17:45:34,655 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini22p' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,655 !! 2022-12-14T17:45:34,656 ############################ 2022-12-14T17:45:34,657 # Package would be ignored # 2022-12-14T17:45:34,657 ############################ 2022-12-14T17:45:34,657 Python recognizes 'vermouth.data.force_fields.martini22p' as an importable package, 2022-12-14T17:45:34,657 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,658 'vermouth.data.force_fields.martini22p' has been automatically added to the distribution only 2022-12-14T17:45:34,658 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,659 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,659 Please make sure that 'vermouth.data.force_fields.martini22p' is included as a package by using 2022-12-14T17:45:34,660 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,660 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,660 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,661 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,661 documentation page. 2022-12-14T17:45:34,662 !! 2022-12-14T17:45:34,662 check.warn(importable) 2022-12-14T17:45:34,663 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini3001' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,663 !! 2022-12-14T17:45:34,664 ############################ 2022-12-14T17:45:34,664 # Package would be ignored # 2022-12-14T17:45:34,664 ############################ 2022-12-14T17:45:34,665 Python recognizes 'vermouth.data.force_fields.martini3001' as an importable package, 2022-12-14T17:45:34,665 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,666 'vermouth.data.force_fields.martini3001' has been automatically added to the distribution only 2022-12-14T17:45:34,666 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,666 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,667 Please make sure that 'vermouth.data.force_fields.martini3001' is included as a package by using 2022-12-14T17:45:34,667 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,668 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,668 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,668 documentation page. 2022-12-14T17:45:34,669 !! 2022-12-14T17:45:34,670 check.warn(importable) 2022-12-14T17:45:34,670 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini30b32' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,670 !! 2022-12-14T17:45:34,671 ############################ 2022-12-14T17:45:34,671 # Package would be ignored # 2022-12-14T17:45:34,672 ############################ 2022-12-14T17:45:34,672 Python recognizes 'vermouth.data.force_fields.martini30b32' as an importable package, 2022-12-14T17:45:34,672 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,673 'vermouth.data.force_fields.martini30b32' has been automatically added to the distribution only 2022-12-14T17:45:34,673 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,674 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,674 Please make sure that 'vermouth.data.force_fields.martini30b32' is included as a package by using 2022-12-14T17:45:34,674 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,675 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,675 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,676 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,676 documentation page. 2022-12-14T17:45:34,677 !! 2022-12-14T17:45:34,677 check.warn(importable) 2022-12-14T17:45:34,678 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini30dev' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,678 !! 2022-12-14T17:45:34,679 ############################ 2022-12-14T17:45:34,679 # Package would be ignored # 2022-12-14T17:45:34,679 ############################ 2022-12-14T17:45:34,680 Python recognizes 'vermouth.data.force_fields.martini30dev' as an importable package, 2022-12-14T17:45:34,680 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,680 'vermouth.data.force_fields.martini30dev' has been automatically added to the distribution only 2022-12-14T17:45:34,681 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,681 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,682 Please make sure that 'vermouth.data.force_fields.martini30dev' is included as a package by using 2022-12-14T17:45:34,682 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,682 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,682 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,683 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,683 documentation page. 2022-12-14T17:45:34,684 !! 2022-12-14T17:45:34,685 check.warn(importable) 2022-12-14T17:45:34,685 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,685 !! 2022-12-14T17:45:34,686 ############################ 2022-12-14T17:45:34,686 # Package would be ignored # 2022-12-14T17:45:34,687 ############################ 2022-12-14T17:45:34,687 Python recognizes 'vermouth.data.mappings' as an importable package, 2022-12-14T17:45:34,687 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,688 'vermouth.data.mappings' has been automatically added to the distribution only 2022-12-14T17:45:34,688 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,688 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,689 Please make sure that 'vermouth.data.mappings' is included as a package by using 2022-12-14T17:45:34,689 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,689 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,690 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,690 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,691 documentation page. 2022-12-14T17:45:34,691 !! 2022-12-14T17:45:34,692 check.warn(importable) 2022-12-14T17:45:34,692 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,693 !! 2022-12-14T17:45:34,693 ############################ 2022-12-14T17:45:34,694 # Package would be ignored # 2022-12-14T17:45:34,694 ############################ 2022-12-14T17:45:34,694 Python recognizes 'vermouth.data.mappings.elnedyn' as an importable package, 2022-12-14T17:45:34,694 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,695 'vermouth.data.mappings.elnedyn' has been automatically added to the distribution only 2022-12-14T17:45:34,695 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,696 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,696 Please make sure that 'vermouth.data.mappings.elnedyn' is included as a package by using 2022-12-14T17:45:34,696 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,697 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,697 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,698 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,698 documentation page. 2022-12-14T17:45:34,699 !! 2022-12-14T17:45:34,699 check.warn(importable) 2022-12-14T17:45:34,700 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn.elnedyn22p' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,700 !! 2022-12-14T17:45:34,701 ############################ 2022-12-14T17:45:34,701 # Package would be ignored # 2022-12-14T17:45:34,701 ############################ 2022-12-14T17:45:34,702 Python recognizes 'vermouth.data.mappings.elnedyn.elnedyn22p' as an importable package, 2022-12-14T17:45:34,702 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,703 'vermouth.data.mappings.elnedyn.elnedyn22p' has been automatically added to the distribution only 2022-12-14T17:45:34,703 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,703 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,704 Please make sure that 'vermouth.data.mappings.elnedyn.elnedyn22p' is included as a package by using 2022-12-14T17:45:34,704 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,704 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,705 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,705 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,705 documentation page. 2022-12-14T17:45:34,706 !! 2022-12-14T17:45:34,707 check.warn(importable) 2022-12-14T17:45:34,707 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn21' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,707 !! 2022-12-14T17:45:34,708 ############################ 2022-12-14T17:45:34,709 # Package would be ignored # 2022-12-14T17:45:34,709 ############################ 2022-12-14T17:45:34,709 Python recognizes 'vermouth.data.mappings.elnedyn21' as an importable package, 2022-12-14T17:45:34,709 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,710 'vermouth.data.mappings.elnedyn21' has been automatically added to the distribution only 2022-12-14T17:45:34,710 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,711 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,711 Please make sure that 'vermouth.data.mappings.elnedyn21' is included as a package by using 2022-12-14T17:45:34,711 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,712 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,712 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,713 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,713 documentation page. 2022-12-14T17:45:34,714 !! 2022-12-14T17:45:34,714 check.warn(importable) 2022-12-14T17:45:34,715 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.martini3001' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,715 !! 2022-12-14T17:45:34,716 ############################ 2022-12-14T17:45:34,716 # Package would be ignored # 2022-12-14T17:45:34,716 ############################ 2022-12-14T17:45:34,717 Python recognizes 'vermouth.data.mappings.martini3001' as an importable package, 2022-12-14T17:45:34,717 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,717 'vermouth.data.mappings.martini3001' has been automatically added to the distribution only 2022-12-14T17:45:34,718 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,718 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,719 Please make sure that 'vermouth.data.mappings.martini3001' is included as a package by using 2022-12-14T17:45:34,719 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,719 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,720 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,720 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,720 documentation page. 2022-12-14T17:45:34,721 !! 2022-12-14T17:45:34,722 check.warn(importable) 2022-12-14T17:45:34,722 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.martini30b32' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,722 !! 2022-12-14T17:45:34,723 ############################ 2022-12-14T17:45:34,724 # Package would be ignored # 2022-12-14T17:45:34,724 ############################ 2022-12-14T17:45:34,724 Python recognizes 'vermouth.data.mappings.martini30b32' as an importable package, 2022-12-14T17:45:34,724 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,725 'vermouth.data.mappings.martini30b32' has been automatically added to the distribution only 2022-12-14T17:45:34,725 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,726 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,726 Please make sure that 'vermouth.data.mappings.martini30b32' is included as a package by using 2022-12-14T17:45:34,726 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,727 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,727 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,728 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,728 documentation page. 2022-12-14T17:45:34,729 !! 2022-12-14T17:45:34,729 check.warn(importable) 2022-12-14T17:45:34,730 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.graphing' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,730 !! 2022-12-14T17:45:34,731 ############################ 2022-12-14T17:45:34,731 # Package would be ignored # 2022-12-14T17:45:34,731 ############################ 2022-12-14T17:45:34,732 Python recognizes 'vermouth.graphing' as an importable package, 2022-12-14T17:45:34,732 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,733 'vermouth.graphing' has been automatically added to the distribution only 2022-12-14T17:45:34,733 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,733 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,734 Please make sure that 'vermouth.graphing' is included as a package by using 2022-12-14T17:45:34,734 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,734 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,735 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,735 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,735 documentation page. 2022-12-14T17:45:34,736 !! 2022-12-14T17:45:34,737 check.warn(importable) 2022-12-14T17:45:34,737 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,737 !! 2022-12-14T17:45:34,738 ############################ 2022-12-14T17:45:34,739 # Package would be ignored # 2022-12-14T17:45:34,739 ############################ 2022-12-14T17:45:34,739 Python recognizes 'vermouth.tests.data' as an importable package, 2022-12-14T17:45:34,739 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,740 'vermouth.tests.data' has been automatically added to the distribution only 2022-12-14T17:45:34,740 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,741 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,741 Please make sure that 'vermouth.tests.data' is included as a package by using 2022-12-14T17:45:34,741 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,742 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,743 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,743 documentation page. 2022-12-14T17:45:34,744 !! 2022-12-14T17:45:34,744 check.warn(importable) 2022-12-14T17:45:34,745 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.force_fields' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,745 !! 2022-12-14T17:45:34,746 ############################ 2022-12-14T17:45:34,746 # Package would be ignored # 2022-12-14T17:45:34,746 ############################ 2022-12-14T17:45:34,747 Python recognizes 'vermouth.tests.data.force_fields' as an importable package, 2022-12-14T17:45:34,747 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,747 'vermouth.tests.data.force_fields' has been automatically added to the distribution only 2022-12-14T17:45:34,748 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,748 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,749 Please make sure that 'vermouth.tests.data.force_fields' is included as a package by using 2022-12-14T17:45:34,749 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,749 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,749 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,750 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,750 documentation page. 2022-12-14T17:45:34,751 !! 2022-12-14T17:45:34,752 check.warn(importable) 2022-12-14T17:45:34,752 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.force_fields.pepplane' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,752 !! 2022-12-14T17:45:34,753 ############################ 2022-12-14T17:45:34,754 # Package would be ignored # 2022-12-14T17:45:34,754 ############################ 2022-12-14T17:45:34,754 Python recognizes 'vermouth.tests.data.force_fields.pepplane' as an importable package, 2022-12-14T17:45:34,754 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,755 'vermouth.tests.data.force_fields.pepplane' has been automatically added to the distribution only 2022-12-14T17:45:34,755 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,756 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,756 Please make sure that 'vermouth.tests.data.force_fields.pepplane' is included as a package by using 2022-12-14T17:45:34,756 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,757 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,758 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,758 documentation page. 2022-12-14T17:45:34,759 !! 2022-12-14T17:45:34,759 check.warn(importable) 2022-12-14T17:45:34,760 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.integration_tests' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:34,760 !! 2022-12-14T17:45:34,761 ############################ 2022-12-14T17:45:34,761 # Package would be ignored # 2022-12-14T17:45:34,761 ############################ 2022-12-14T17:45:34,762 Python recognizes 'vermouth.tests.data.integration_tests' as an importable package, 2022-12-14T17:45:34,762 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:34,762 'vermouth.tests.data.integration_tests' has been automatically added to the distribution only 2022-12-14T17:45:34,763 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:34,763 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:34,764 Please make sure that 'vermouth.tests.data.integration_tests' is included as a package by using 2022-12-14T17:45:34,764 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:34,764 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:34,764 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:34,765 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:34,765 documentation page. 2022-12-14T17:45:34,766 !! 2022-12-14T17:45:34,767 check.warn(importable) 2022-12-14T17:45:35,188 creating build/lib/vermouth/tests/data 2022-12-14T17:45:35,190 copying vermouth/tests/data/1bta.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,202 copying vermouth/tests/data/1bta_mutated.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,213 copying vermouth/tests/data/2QWO.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,235 copying vermouth/tests/data/2dn2.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,283 copying vermouth/tests/data/6E8W.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,456 copying vermouth/tests/data/ala5.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,461 copying vermouth/tests/data/ala5_cg.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,465 copying vermouth/tests/data/dna-short.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,470 copying vermouth/tests/data/dssp_1bta.ssd -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,476 copying vermouth/tests/data/heme.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,481 copying vermouth/tests/data/tri_alanine.pdb -> build/lib/vermouth/tests/data 2022-12-14T17:45:35,485 creating build/lib/vermouth/tests/data/force_fields 2022-12-14T17:45:35,487 creating build/lib/vermouth/tests/data/force_fields/martini-test 2022-12-14T17:45:35,490 copying vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/lib/vermouth/tests/data/force_fields/martini-test 2022-12-14T17:45:35,497 creating build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:35,499 copying vermouth/tests/data/force_fields/pepplane/ala.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:35,504 copying vermouth/tests/data/force_fields/pepplane/general.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:35,509 copying vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:35,514 creating build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:35,516 copying vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:35,523 copying vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:35,528 creating build/lib/vermouth/tests/data/integration_tests 2022-12-14T17:45:35,530 creating build/lib/vermouth/tests/data/integration_tests/tier-0 2022-12-14T17:45:35,532 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:35,535 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:35,541 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:35,546 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,548 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,553 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,557 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,561 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,565 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:35,569 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:35,571 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:35,575 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:35,581 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,583 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,589 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,593 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,597 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,602 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,606 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,611 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:35,615 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:35,616 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:35,621 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:35,628 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,630 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,635 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,640 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,644 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,649 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,653 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,657 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:35,662 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:35,663 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:35,668 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:35,673 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,675 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,680 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,685 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,689 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,693 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,697 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,701 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:35,705 creating build/lib/vermouth/tests/data/integration_tests/tier-1 2022-12-14T17:45:35,706 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:35,708 copying vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:35,713 copying vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:35,737 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:35,739 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:35,743 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:35,767 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,768 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,776 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,780 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,787 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,792 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,796 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,808 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:35,812 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,814 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,822 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,826 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,833 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,837 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,841 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,851 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:35,856 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:35,857 copying vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:35,865 copying vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:35,869 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,871 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,876 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,880 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,885 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,891 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,896 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,900 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,907 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,913 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:35,918 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:35,920 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:35,933 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:35,937 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,939 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,947 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,951 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,956 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,961 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,964 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,975 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:35,980 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:35,982 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:35,986 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:35,994 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:35,996 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,002 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,007 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,012 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,017 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,022 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,028 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:36,033 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:36,035 copying vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:36,040 copying vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:36,049 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,051 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,057 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,062 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,068 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,072 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,077 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,084 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:36,088 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:36,090 copying vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:36,094 copying vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:36,102 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,104 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,110 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,115 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,119 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,123 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,129 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,135 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:36,139 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:36,141 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:36,145 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:36,156 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,158 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,164 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,170 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,175 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,179 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,186 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,192 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,200 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:36,204 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:36,206 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:36,210 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:36,221 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,223 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,229 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,235 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,239 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,243 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,251 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,255 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,262 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:36,266 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:36,267 copying vermouth/tests/data/integration_tests/tier-1/villin/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:36,272 copying vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:36,277 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,279 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,284 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,289 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,293 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,298 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,302 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:36,306 creating build/lib/vermouth/tests/data/mappings 2022-12-14T17:45:36,307 creating build/lib/vermouth/tests/data/mappings/universal-test 2022-12-14T17:45:36,309 creating build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-14T17:45:36,311 copying vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-14T17:45:36,315 creating build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:36,317 copying vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:36,322 copying vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:36,326 creating build/lib/vermouth/tests/gmx 2022-12-14T17:45:36,329 copying vermouth/tests/gmx/test_gro.py -> build/lib/vermouth/tests/gmx 2022-12-14T17:45:36,335 copying vermouth/tests/gmx/test_itp.py -> build/lib/vermouth/tests/gmx 2022-12-14T17:45:36,339 creating build/lib/vermouth/tests/pdb 2022-12-14T17:45:36,341 copying vermouth/tests/pdb/test_read_pdb.py -> build/lib/vermouth/tests/pdb 2022-12-14T17:45:36,348 copying vermouth/tests/pdb/test_write_pdb.py -> build/lib/vermouth/tests/pdb 2022-12-14T17:45:36,352 creating build/lib/vermouth/data 2022-12-14T17:45:36,354 copying vermouth/data/quotes.txt -> build/lib/vermouth/data 2022-12-14T17:45:36,358 creating build/lib/vermouth/data/force_fields 2022-12-14T17:45:36,359 creating build/lib/vermouth/data/force_fields/amber 2022-12-14T17:45:36,361 copying vermouth/data/force_fields/amber/aminoacids.rtp -> build/lib/vermouth/data/force_fields/amber 2022-12-14T17:45:36,368 copying vermouth/data/force_fields/amber/modifications.ff -> build/lib/vermouth/data/force_fields/amber 2022-12-14T17:45:36,372 creating build/lib/vermouth/data/force_fields/charmm 2022-12-14T17:45:36,373 copying vermouth/data/force_fields/charmm/aminoacids.rtp -> build/lib/vermouth/data/force_fields/charmm 2022-12-14T17:45:36,379 copying vermouth/data/force_fields/charmm/modifications.ff -> build/lib/vermouth/data/force_fields/charmm 2022-12-14T17:45:36,384 copying vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/lib/vermouth/data/force_fields/charmm 2022-12-14T17:45:36,479 creating build/lib/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:36,481 copying vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:36,486 copying vermouth/data/force_fields/elnedyn21/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:36,491 copying vermouth/data/force_fields/elnedyn21/general.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:36,495 copying vermouth/data/force_fields/elnedyn21/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:36,499 creating build/lib/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:36,501 copying vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:36,507 copying vermouth/data/force_fields/elnedyn22/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:36,511 copying vermouth/data/force_fields/elnedyn22/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:36,515 copying vermouth/data/force_fields/elnedyn22/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:36,519 creating build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:36,520 copying vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:36,526 copying vermouth/data/force_fields/elnedyn22p/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:36,530 copying vermouth/data/force_fields/elnedyn22p/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:36,534 copying vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:36,538 creating build/lib/vermouth/data/force_fields/gromos 2022-12-14T17:45:36,540 copying vermouth/data/force_fields/gromos/aminoacids.rtp -> build/lib/vermouth/data/force_fields/gromos 2022-12-14T17:45:36,548 copying vermouth/data/force_fields/gromos/cofactors.ff -> build/lib/vermouth/data/force_fields/gromos 2022-12-14T17:45:36,553 copying vermouth/data/force_fields/gromos/modifications.ff -> build/lib/vermouth/data/force_fields/gromos 2022-12-14T17:45:36,557 creating build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,560 copying vermouth/data/force_fields/martini22/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,567 copying vermouth/data/force_fields/martini22/citations.bib -> build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,571 copying vermouth/data/force_fields/martini22/general.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,575 copying vermouth/data/force_fields/martini22/modifications.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,579 copying vermouth/data/force_fields/martini22/nucleotides.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-14T17:45:36,584 creating build/lib/vermouth/data/force_fields/martini22p 2022-12-14T17:45:36,585 copying vermouth/data/force_fields/martini22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-14T17:45:36,591 copying vermouth/data/force_fields/martini22p/citations.bib -> build/lib/vermouth/data/force_fields/martini22p 2022-12-14T17:45:36,596 copying vermouth/data/force_fields/martini22p/general.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-14T17:45:36,600 copying vermouth/data/force_fields/martini22p/modifications.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-14T17:45:36,604 creating build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,605 copying vermouth/data/force_fields/martini3001/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,612 copying vermouth/data/force_fields/martini3001/citations.bib -> build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,616 copying vermouth/data/force_fields/martini3001/general.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,621 copying vermouth/data/force_fields/martini3001/modifications.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,625 copying vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-14T17:45:36,630 creating build/lib/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:36,632 copying vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:36,637 copying vermouth/data/force_fields/martini30b32/citations.bib -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:36,642 copying vermouth/data/force_fields/martini30b32/modifications.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:36,646 copying vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:36,650 creating build/lib/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:36,652 copying vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:36,658 copying vermouth/data/force_fields/martini30dev/citations.bib -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:36,662 copying vermouth/data/force_fields/martini30dev/modifications.ff -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:36,666 creating build/lib/vermouth/data/mappings 2022-12-14T17:45:36,668 copying vermouth/data/mappings/ala.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,672 copying vermouth/data/mappings/ala.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,676 copying vermouth/data/mappings/arg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,680 copying vermouth/data/mappings/arg.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,684 copying vermouth/data/mappings/arg.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,688 copying vermouth/data/mappings/asn.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,692 copying vermouth/data/mappings/asn.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,696 copying vermouth/data/mappings/asn.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,700 copying vermouth/data/mappings/asp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,704 copying vermouth/data/mappings/asp.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,708 copying vermouth/data/mappings/asp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,712 copying vermouth/data/mappings/asp0.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,717 copying vermouth/data/mappings/chol.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,721 copying vermouth/data/mappings/cys.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,725 copying vermouth/data/mappings/cys.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,729 copying vermouth/data/mappings/dmpc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,733 copying vermouth/data/mappings/dopc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,738 copying vermouth/data/mappings/dppc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,743 copying vermouth/data/mappings/dppg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,747 copying vermouth/data/mappings/fmn.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,751 copying vermouth/data/mappings/gln.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,755 copying vermouth/data/mappings/gln.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,759 copying vermouth/data/mappings/gln.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,763 copying vermouth/data/mappings/glu.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,767 copying vermouth/data/mappings/glu.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,771 copying vermouth/data/mappings/glu.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,775 copying vermouth/data/mappings/glu0.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,780 copying vermouth/data/mappings/gly.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,784 copying vermouth/data/mappings/gly.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,788 copying vermouth/data/mappings/his.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,792 copying vermouth/data/mappings/his.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,796 copying vermouth/data/mappings/hsd.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,800 copying vermouth/data/mappings/hse.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,805 copying vermouth/data/mappings/hsp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,808 copying vermouth/data/mappings/ile.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,812 copying vermouth/data/mappings/ile.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,816 copying vermouth/data/mappings/leu.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,821 copying vermouth/data/mappings/leu.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,825 copying vermouth/data/mappings/lys.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,829 copying vermouth/data/mappings/lys.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,833 copying vermouth/data/mappings/lys.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,837 copying vermouth/data/mappings/met.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,841 copying vermouth/data/mappings/met.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,845 copying vermouth/data/mappings/modifications.gromos.mapping -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,849 copying vermouth/data/mappings/modifications.mapping -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,853 copying vermouth/data/mappings/nad.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,858 copying vermouth/data/mappings/phe.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,862 copying vermouth/data/mappings/phe.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,865 copying vermouth/data/mappings/popc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,870 copying vermouth/data/mappings/pope.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,874 copying vermouth/data/mappings/popg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,879 copying vermouth/data/mappings/pops.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,883 copying vermouth/data/mappings/pro.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,887 copying vermouth/data/mappings/pro.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,891 copying vermouth/data/mappings/ser.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,895 copying vermouth/data/mappings/ser.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,899 copying vermouth/data/mappings/ser.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,903 copying vermouth/data/mappings/thr.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,907 copying vermouth/data/mappings/thr.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,911 copying vermouth/data/mappings/thr.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,915 copying vermouth/data/mappings/tpp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,919 copying vermouth/data/mappings/trp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,923 copying vermouth/data/mappings/trp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,927 copying vermouth/data/mappings/tyr.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,931 copying vermouth/data/mappings/tyr.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,935 copying vermouth/data/mappings/val.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,939 copying vermouth/data/mappings/val.gromos.map -> build/lib/vermouth/data/mappings 2022-12-14T17:45:36,943 creating build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,945 copying vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,949 copying vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,954 copying vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,958 copying vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,962 copying vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,966 copying vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,970 copying vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,974 copying vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,979 copying vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,984 copying vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,987 copying vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,992 copying vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:36,996 copying vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,000 copying vermouth/data/mappings/elnedyn/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,004 copying vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,008 copying vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,012 copying vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,016 copying vermouth/data/mappings/elnedyn/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,020 copying vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,024 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,028 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,032 copying vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,036 copying vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,041 copying vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,045 copying vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,049 copying vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,053 copying vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,057 copying vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,061 copying vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,065 copying vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,069 copying vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,074 copying vermouth/data/mappings/elnedyn/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-14T17:45:37,077 creating build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,079 copying vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,084 copying vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,087 copying vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,091 copying vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,095 copying vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,100 copying vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,104 copying vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,107 copying vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:37,111 creating build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,113 copying vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,117 copying vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,121 copying vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,125 copying vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,129 copying vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,133 copying vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,137 copying vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,141 copying vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,145 copying vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,149 copying vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,153 copying vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,156 copying vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,160 copying vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,164 copying vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,169 copying vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,173 copying vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,177 copying vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,181 copying vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,184 copying vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,189 copying vermouth/data/mappings/elnedyn21/modifications.mapping -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,192 copying vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,196 copying vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,201 copying vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,204 copying vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,208 copying vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,212 copying vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,216 copying vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,220 copying vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,224 copying vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:37,228 creating build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,229 copying vermouth/data/mappings/martini3001/ala.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,234 copying vermouth/data/mappings/martini3001/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,238 copying vermouth/data/mappings/martini3001/antr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,242 copying vermouth/data/mappings/martini3001/arg.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,246 copying vermouth/data/mappings/martini3001/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,250 copying vermouth/data/mappings/martini3001/ash.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,254 copying vermouth/data/mappings/martini3001/asn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,258 copying vermouth/data/mappings/martini3001/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,262 copying vermouth/data/mappings/martini3001/asp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,266 copying vermouth/data/mappings/martini3001/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,269 copying vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,273 copying vermouth/data/mappings/martini3001/bald.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,278 copying vermouth/data/mappings/martini3001/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,281 copying vermouth/data/mappings/martini3001/c3.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,285 copying vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,289 copying vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,293 copying vermouth/data/mappings/martini3001/cume.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,297 copying vermouth/data/mappings/martini3001/cys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,301 copying vermouth/data/mappings/martini3001/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,305 copying vermouth/data/mappings/martini3001/diol.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,309 copying vermouth/data/mappings/martini3001/diox.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,313 copying vermouth/data/mappings/martini3001/dman.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,317 copying vermouth/data/mappings/martini3001/eben.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,321 copying vermouth/data/mappings/martini3001/fura.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,325 copying vermouth/data/mappings/martini3001/glh.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,329 copying vermouth/data/mappings/martini3001/gln.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,333 copying vermouth/data/mappings/martini3001/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,337 copying vermouth/data/mappings/martini3001/glu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,341 copying vermouth/data/mappings/martini3001/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,345 copying vermouth/data/mappings/martini3001/glup.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,349 copying vermouth/data/mappings/martini3001/gly.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,353 copying vermouth/data/mappings/martini3001/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,357 copying vermouth/data/mappings/martini3001/hid.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,360 copying vermouth/data/mappings/martini3001/hie.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,364 copying vermouth/data/mappings/martini3001/hip.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,368 copying vermouth/data/mappings/martini3001/his.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,372 copying vermouth/data/mappings/martini3001/his.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,376 copying vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,380 copying vermouth/data/mappings/martini3001/hse.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,384 copying vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,388 copying vermouth/data/mappings/martini3001/ile.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,392 copying vermouth/data/mappings/martini3001/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,396 copying vermouth/data/mappings/martini3001/imia.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,400 copying vermouth/data/mappings/martini3001/inda.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,403 copying vermouth/data/mappings/martini3001/indo.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,407 copying vermouth/data/mappings/martini3001/leu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,411 copying vermouth/data/mappings/martini3001/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,415 copying vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,419 copying vermouth/data/mappings/martini3001/lyn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,423 copying vermouth/data/mappings/martini3001/lys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,427 copying vermouth/data/mappings/martini3001/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,431 copying vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,434 copying vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,438 copying vermouth/data/mappings/martini3001/meob.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,442 copying vermouth/data/mappings/martini3001/met.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,446 copying vermouth/data/mappings/martini3001/met.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,450 copying vermouth/data/mappings/martini3001/mind.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,454 copying vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,458 copying vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,462 copying vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,466 copying vermouth/data/mappings/martini3001/naft.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,470 copying vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,473 copying vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,477 copying vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,481 copying vermouth/data/mappings/martini3001/phe.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,485 copying vermouth/data/mappings/martini3001/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,489 copying vermouth/data/mappings/martini3001/phen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,493 copying vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,497 copying vermouth/data/mappings/martini3001/prld.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,500 copying vermouth/data/mappings/martini3001/pro.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,504 copying vermouth/data/mappings/martini3001/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,508 copying vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,512 copying vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,516 copying vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,520 copying vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,523 copying vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,527 copying vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,531 copying vermouth/data/mappings/martini3001/ser.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,535 copying vermouth/data/mappings/martini3001/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,539 copying vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,543 copying vermouth/data/mappings/martini3001/styr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,547 copying vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,551 copying vermouth/data/mappings/martini3001/thf.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,554 copying vermouth/data/mappings/martini3001/thip.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,558 copying vermouth/data/mappings/martini3001/thp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,562 copying vermouth/data/mappings/martini3001/thr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,566 copying vermouth/data/mappings/martini3001/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,570 copying vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,574 copying vermouth/data/mappings/martini3001/trp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,577 copying vermouth/data/mappings/martini3001/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,582 copying vermouth/data/mappings/martini3001/tyr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,585 copying vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,590 copying vermouth/data/mappings/martini3001/val.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,594 copying vermouth/data/mappings/martini3001/val.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,598 copying vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,601 copying vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,605 copying vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-14T17:45:37,609 creating build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,611 copying vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,615 copying vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,619 copying vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,623 copying vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,627 copying vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,631 copying vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,635 copying vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,639 copying vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,643 copying vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,647 copying vermouth/data/mappings/martini30b32/his.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,651 copying vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,655 copying vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,659 copying vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,663 copying vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,667 copying vermouth/data/mappings/martini30b32/met.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,671 copying vermouth/data/mappings/martini30b32/modifications.mapping -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,674 copying vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,678 copying vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,682 copying vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,686 copying vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,690 copying vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,694 copying vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,697 copying vermouth/data/mappings/martini30b32/val.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-14T17:45:37,701 creating build/lib/vermouth/graphing 2022-12-14T17:45:37,703 copying vermouth/graphing/grappa.py -> build/lib/vermouth/graphing 2022-12-14T17:45:38,087 running build_scripts 2022-12-14T17:45:38,089 creating build/scripts-3.7 2022-12-14T17:45:38,091 copying and adjusting bin/martinize2 -> build/scripts-3.7 2022-12-14T17:45:38,099 changing mode of build/scripts-3.7/martinize2 from 644 to 755 2022-12-14T17:45:38,100 installing to build/bdist.linux-armv7l/wheel 2022-12-14T17:45:38,101 running install 2022-12-14T17:45:38,221 [pbr] Generating AUTHORS 2022-12-14T17:45:38,248 [pbr] AUTHORS complete (0.0s) 2022-12-14T17:45:38,249 running install_lib 2022-12-14T17:45:38,271 creating build/bdist.linux-armv7l 2022-12-14T17:45:38,272 creating build/bdist.linux-armv7l/wheel 2022-12-14T17:45:38,276 creating build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:38,278 copying build/lib/vermouth/parser_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:38,285 creating build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-14T17:45:38,286 copying build/lib/vermouth/pdb/pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-14T17:45:38,292 copying build/lib/vermouth/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-14T17:45:38,296 creating build/bdist.linux-armv7l/wheel/vermouth/data 2022-12-14T17:45:38,298 copying build/lib/vermouth/data/quotes.txt -> build/bdist.linux-armv7l/wheel/vermouth/data 2022-12-14T17:45:38,303 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields 2022-12-14T17:45:38,306 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:38,308 copying build/lib/vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:38,313 copying build/lib/vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:38,317 copying build/lib/vermouth/data/force_fields/martini30b32/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:38,320 copying build/lib/vermouth/data/force_fields/martini30b32/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-14T17:45:38,325 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:38,327 copying build/lib/vermouth/data/force_fields/elnedyn21/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:38,331 copying build/lib/vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:38,335 copying build/lib/vermouth/data/force_fields/elnedyn21/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:38,339 copying build/lib/vermouth/data/force_fields/elnedyn21/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-14T17:45:38,343 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,345 copying build/lib/vermouth/data/force_fields/martini3001/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,349 copying build/lib/vermouth/data/force_fields/martini3001/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,354 copying build/lib/vermouth/data/force_fields/martini3001/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,358 copying build/lib/vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,362 copying build/lib/vermouth/data/force_fields/martini3001/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-14T17:45:38,366 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:38,368 copying build/lib/vermouth/data/force_fields/elnedyn22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:38,372 copying build/lib/vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:38,376 copying build/lib/vermouth/data/force_fields/elnedyn22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:38,380 copying build/lib/vermouth/data/force_fields/elnedyn22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-14T17:45:38,385 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:38,386 copying build/lib/vermouth/data/force_fields/elnedyn22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:38,390 copying build/lib/vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:38,395 copying build/lib/vermouth/data/force_fields/elnedyn22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:38,398 copying build/lib/vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-14T17:45:38,402 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-14T17:45:38,404 copying build/lib/vermouth/data/force_fields/amber/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-14T17:45:38,410 copying build/lib/vermouth/data/force_fields/amber/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-14T17:45:38,415 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-14T17:45:38,416 copying build/lib/vermouth/data/force_fields/gromos/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-14T17:45:38,424 copying build/lib/vermouth/data/force_fields/gromos/cofactors.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-14T17:45:38,428 copying build/lib/vermouth/data/force_fields/gromos/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-14T17:45:38,432 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:38,434 copying build/lib/vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:38,440 copying build/lib/vermouth/data/force_fields/martini30dev/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:38,443 copying build/lib/vermouth/data/force_fields/martini30dev/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-14T17:45:38,447 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-14T17:45:38,449 copying build/lib/vermouth/data/force_fields/charmm/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-14T17:45:38,454 copying build/lib/vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-14T17:45:38,568 copying build/lib/vermouth/data/force_fields/charmm/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-14T17:45:38,573 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,575 copying build/lib/vermouth/data/force_fields/martini22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,579 copying build/lib/vermouth/data/force_fields/martini22/nucleotides.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,583 copying build/lib/vermouth/data/force_fields/martini22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,588 copying build/lib/vermouth/data/force_fields/martini22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,591 copying build/lib/vermouth/data/force_fields/martini22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-14T17:45:38,596 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-14T17:45:38,597 copying build/lib/vermouth/data/force_fields/martini22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-14T17:45:38,601 copying build/lib/vermouth/data/force_fields/martini22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-14T17:45:38,606 copying build/lib/vermouth/data/force_fields/martini22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-14T17:45:38,610 copying build/lib/vermouth/data/force_fields/martini22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-14T17:45:38,616 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:38,618 copying build/lib/vermouth/data/mappings/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:38,624 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,626 copying build/lib/vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,630 copying build/lib/vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,633 copying build/lib/vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,637 copying build/lib/vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,640 copying build/lib/vermouth/data/mappings/martini30b32/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,644 copying build/lib/vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,647 copying build/lib/vermouth/data/mappings/martini30b32/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,651 copying build/lib/vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,654 copying build/lib/vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,658 copying build/lib/vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,661 copying build/lib/vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,664 copying build/lib/vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,668 copying build/lib/vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,671 copying build/lib/vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,675 copying build/lib/vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,679 copying build/lib/vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,682 copying build/lib/vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,686 copying build/lib/vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,689 copying build/lib/vermouth/data/mappings/martini30b32/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,693 copying build/lib/vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,696 copying build/lib/vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,700 copying build/lib/vermouth/data/mappings/martini30b32/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,703 copying build/lib/vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-14T17:45:38,707 copying build/lib/vermouth/data/mappings/asn.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:38,710 copying build/lib/vermouth/data/mappings/ser.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:38,716 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,717 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,721 copying build/lib/vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,725 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,728 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,732 copying build/lib/vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,735 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,739 copying build/lib/vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,743 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,747 copying build/lib/vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,750 copying build/lib/vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,754 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,757 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,761 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,765 copying build/lib/vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,768 copying build/lib/vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,772 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,776 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,779 copying build/lib/vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,783 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,787 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,791 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,794 copying build/lib/vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,798 copying build/lib/vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,801 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,805 copying build/lib/vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,808 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,812 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,816 copying build/lib/vermouth/data/mappings/elnedyn21/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,819 copying build/lib/vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-14T17:45:38,823 copying build/lib/vermouth/data/mappings/cys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:38,831 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,833 copying build/lib/vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,837 copying build/lib/vermouth/data/mappings/martini3001/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,840 copying build/lib/vermouth/data/mappings/martini3001/gly.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,844 copying build/lib/vermouth/data/mappings/martini3001/lyn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,848 copying build/lib/vermouth/data/mappings/martini3001/ser.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,851 copying build/lib/vermouth/data/mappings/martini3001/val.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,855 copying build/lib/vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,858 copying build/lib/vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,861 copying build/lib/vermouth/data/mappings/martini3001/meob.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,865 copying build/lib/vermouth/data/mappings/martini3001/diol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,869 copying build/lib/vermouth/data/mappings/martini3001/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,872 copying build/lib/vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,876 copying build/lib/vermouth/data/mappings/martini3001/styr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,879 copying build/lib/vermouth/data/mappings/martini3001/thp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,883 copying build/lib/vermouth/data/mappings/martini3001/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,886 copying build/lib/vermouth/data/mappings/martini3001/dman.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,889 copying build/lib/vermouth/data/mappings/martini3001/c3.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,893 copying build/lib/vermouth/data/mappings/martini3001/glu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,896 copying build/lib/vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,900 copying build/lib/vermouth/data/mappings/martini3001/ile.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,903 copying build/lib/vermouth/data/mappings/martini3001/phe.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,906 copying build/lib/vermouth/data/mappings/martini3001/inda.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,910 copying build/lib/vermouth/data/mappings/martini3001/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,913 copying build/lib/vermouth/data/mappings/martini3001/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,917 copying build/lib/vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,920 copying build/lib/vermouth/data/mappings/martini3001/thf.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,923 copying build/lib/vermouth/data/mappings/martini3001/fura.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,927 copying build/lib/vermouth/data/mappings/martini3001/prld.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,930 copying build/lib/vermouth/data/mappings/martini3001/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,934 copying build/lib/vermouth/data/mappings/martini3001/glup.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,937 copying build/lib/vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,940 copying build/lib/vermouth/data/mappings/martini3001/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,944 copying build/lib/vermouth/data/mappings/martini3001/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,947 copying build/lib/vermouth/data/mappings/martini3001/indo.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,951 copying build/lib/vermouth/data/mappings/martini3001/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,954 copying build/lib/vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,957 copying build/lib/vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,961 copying build/lib/vermouth/data/mappings/martini3001/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,964 copying build/lib/vermouth/data/mappings/martini3001/naft.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,968 copying build/lib/vermouth/data/mappings/martini3001/hid.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,971 copying build/lib/vermouth/data/mappings/martini3001/leu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,974 copying build/lib/vermouth/data/mappings/martini3001/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,978 copying build/lib/vermouth/data/mappings/martini3001/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,981 copying build/lib/vermouth/data/mappings/martini3001/glh.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,985 copying build/lib/vermouth/data/mappings/martini3001/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,988 copying build/lib/vermouth/data/mappings/martini3001/trp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,992 copying build/lib/vermouth/data/mappings/martini3001/pro.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,995 copying build/lib/vermouth/data/mappings/martini3001/his.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:38,999 copying build/lib/vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,002 copying build/lib/vermouth/data/mappings/martini3001/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,005 copying build/lib/vermouth/data/mappings/martini3001/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,009 copying build/lib/vermouth/data/mappings/martini3001/mind.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,012 copying build/lib/vermouth/data/mappings/martini3001/arg.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,016 copying build/lib/vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,019 copying build/lib/vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,023 copying build/lib/vermouth/data/mappings/martini3001/phen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,026 copying build/lib/vermouth/data/mappings/martini3001/diox.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,029 copying build/lib/vermouth/data/mappings/martini3001/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,033 copying build/lib/vermouth/data/mappings/martini3001/cys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,036 copying build/lib/vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,040 copying build/lib/vermouth/data/mappings/martini3001/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,043 copying build/lib/vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,046 copying build/lib/vermouth/data/mappings/martini3001/thip.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,050 copying build/lib/vermouth/data/mappings/martini3001/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,053 copying build/lib/vermouth/data/mappings/martini3001/hip.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,057 copying build/lib/vermouth/data/mappings/martini3001/lys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,060 copying build/lib/vermouth/data/mappings/martini3001/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,064 copying build/lib/vermouth/data/mappings/martini3001/eben.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,067 copying build/lib/vermouth/data/mappings/martini3001/asn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,071 copying build/lib/vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,074 copying build/lib/vermouth/data/mappings/martini3001/gln.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,077 copying build/lib/vermouth/data/mappings/martini3001/tyr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,081 copying build/lib/vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,085 copying build/lib/vermouth/data/mappings/martini3001/met.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,088 copying build/lib/vermouth/data/mappings/martini3001/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,091 copying build/lib/vermouth/data/mappings/martini3001/cume.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,095 copying build/lib/vermouth/data/mappings/martini3001/ash.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,098 copying build/lib/vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,102 copying build/lib/vermouth/data/mappings/martini3001/bald.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,105 copying build/lib/vermouth/data/mappings/martini3001/antr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,109 copying build/lib/vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,112 copying build/lib/vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,116 copying build/lib/vermouth/data/mappings/martini3001/thr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,119 copying build/lib/vermouth/data/mappings/martini3001/hie.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,123 copying build/lib/vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,126 copying build/lib/vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,130 copying build/lib/vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,134 copying build/lib/vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,137 copying build/lib/vermouth/data/mappings/martini3001/asp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,141 copying build/lib/vermouth/data/mappings/martini3001/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,145 copying build/lib/vermouth/data/mappings/martini3001/ala.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,148 copying build/lib/vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,152 copying build/lib/vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,155 copying build/lib/vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,159 copying build/lib/vermouth/data/mappings/martini3001/imia.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,163 copying build/lib/vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,166 copying build/lib/vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-14T17:45:39,169 copying build/lib/vermouth/data/mappings/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,173 copying build/lib/vermouth/data/mappings/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,177 copying build/lib/vermouth/data/mappings/asp.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,181 copying build/lib/vermouth/data/mappings/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,184 copying build/lib/vermouth/data/mappings/thr.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,187 copying build/lib/vermouth/data/mappings/pro.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,191 copying build/lib/vermouth/data/mappings/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,194 copying build/lib/vermouth/data/mappings/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,198 copying build/lib/vermouth/data/mappings/trp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,202 copying build/lib/vermouth/data/mappings/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,205 copying build/lib/vermouth/data/mappings/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,209 copying build/lib/vermouth/data/mappings/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,212 copying build/lib/vermouth/data/mappings/thr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,216 copying build/lib/vermouth/data/mappings/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,220 copying build/lib/vermouth/data/mappings/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,223 copying build/lib/vermouth/data/mappings/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,227 copying build/lib/vermouth/data/mappings/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,231 copying build/lib/vermouth/data/mappings/fmn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,234 copying build/lib/vermouth/data/mappings/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,237 copying build/lib/vermouth/data/mappings/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,241 copying build/lib/vermouth/data/mappings/ile.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,245 copying build/lib/vermouth/data/mappings/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,250 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,252 copying build/lib/vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,256 copying build/lib/vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,260 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,263 copying build/lib/vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,268 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,270 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,274 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,277 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,281 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,285 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,288 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,291 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,295 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-14T17:45:39,299 copying build/lib/vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,302 copying build/lib/vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,306 copying build/lib/vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,309 copying build/lib/vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,313 copying build/lib/vermouth/data/mappings/elnedyn/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,316 copying build/lib/vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,320 copying build/lib/vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,324 copying build/lib/vermouth/data/mappings/elnedyn/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,327 copying build/lib/vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,331 copying build/lib/vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,335 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,338 copying build/lib/vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,342 copying build/lib/vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,346 copying build/lib/vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,350 copying build/lib/vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,354 copying build/lib/vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,358 copying build/lib/vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,363 copying build/lib/vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,367 copying build/lib/vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,371 copying build/lib/vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,375 copying build/lib/vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,379 copying build/lib/vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,383 copying build/lib/vermouth/data/mappings/elnedyn/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,388 copying build/lib/vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,392 copying build/lib/vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,396 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,400 copying build/lib/vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,403 copying build/lib/vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-14T17:45:39,407 copying build/lib/vermouth/data/mappings/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,410 copying build/lib/vermouth/data/mappings/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,414 copying build/lib/vermouth/data/mappings/asp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,417 copying build/lib/vermouth/data/mappings/gln.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,421 copying build/lib/vermouth/data/mappings/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,424 copying build/lib/vermouth/data/mappings/lys.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,428 copying build/lib/vermouth/data/mappings/phe.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,431 copying build/lib/vermouth/data/mappings/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,435 copying build/lib/vermouth/data/mappings/modifications.gromos.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,438 copying build/lib/vermouth/data/mappings/nad.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,442 copying build/lib/vermouth/data/mappings/arg.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,445 copying build/lib/vermouth/data/mappings/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,449 copying build/lib/vermouth/data/mappings/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,452 copying build/lib/vermouth/data/mappings/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,455 copying build/lib/vermouth/data/mappings/tyr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,459 copying build/lib/vermouth/data/mappings/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,463 copying build/lib/vermouth/data/mappings/glu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,466 copying build/lib/vermouth/data/mappings/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,469 copying build/lib/vermouth/data/mappings/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,473 copying build/lib/vermouth/data/mappings/met.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,476 copying build/lib/vermouth/data/mappings/glu0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,480 copying build/lib/vermouth/data/mappings/his.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,483 copying build/lib/vermouth/data/mappings/tpp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,486 copying build/lib/vermouth/data/mappings/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,490 copying build/lib/vermouth/data/mappings/val.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,493 copying build/lib/vermouth/data/mappings/gln.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,497 copying build/lib/vermouth/data/mappings/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,501 copying build/lib/vermouth/data/mappings/asn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,504 copying build/lib/vermouth/data/mappings/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,508 copying build/lib/vermouth/data/mappings/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,511 copying build/lib/vermouth/data/mappings/glu.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,515 copying build/lib/vermouth/data/mappings/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,518 copying build/lib/vermouth/data/mappings/ala.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,521 copying build/lib/vermouth/data/mappings/lys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,525 copying build/lib/vermouth/data/mappings/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,528 copying build/lib/vermouth/data/mappings/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,532 copying build/lib/vermouth/data/mappings/gly.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,535 copying build/lib/vermouth/data/mappings/ser.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,539 copying build/lib/vermouth/data/mappings/leu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,542 copying build/lib/vermouth/data/mappings/arg.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,546 copying build/lib/vermouth/data/mappings/asp0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-14T17:45:39,549 copying build/lib/vermouth/map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,555 copying build/lib/vermouth/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,560 creating build/bdist.linux-armv7l/wheel/vermouth/graphing 2022-12-14T17:45:39,562 copying build/lib/vermouth/graphing/grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/graphing 2022-12-14T17:45:39,568 copying build/lib/vermouth/ismags.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,574 copying build/lib/vermouth/utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,579 copying build/lib/vermouth/log_helpers.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,584 copying build/lib/vermouth/forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,589 copying build/lib/vermouth/citation_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,594 copying build/lib/vermouth/selectors.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,598 copying build/lib/vermouth/graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,604 copying build/lib/vermouth/edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,609 copying build/lib/vermouth/truncating_formatter.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:39,616 creating build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:39,619 copying build/lib/vermouth/tests/test_tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:39,625 creating build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-14T17:45:39,627 copying build/lib/vermouth/tests/pdb/test_write_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-14T17:45:39,631 copying build/lib/vermouth/tests/pdb/test_read_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-14T17:45:39,635 copying build/lib/vermouth/tests/test_selectors.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:39,639 copying build/lib/vermouth/tests/test_set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:39,644 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:39,646 copying build/lib/vermouth/tests/data/1bta_mutated.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:39,656 copying build/lib/vermouth/tests/data/tri_alanine.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:39,660 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests 2022-12-14T17:45:39,663 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1 2022-12-14T17:45:39,666 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:39,668 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:39,673 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,675 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,681 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,691 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,694 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,697 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,708 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,715 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-14T17:45:39,719 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-14T17:45:39,747 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:39,749 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:39,754 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,755 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,759 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,763 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,767 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,772 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,776 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,780 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-14T17:45:39,785 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-14T17:45:39,792 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:39,794 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:39,799 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,801 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,804 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,808 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,812 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,816 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,821 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,826 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-14T17:45:39,831 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-14T17:45:39,840 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:39,841 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:39,850 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-14T17:45:39,854 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,856 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,862 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,866 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,870 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,873 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,877 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,882 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,886 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,890 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-14T17:45:39,895 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:39,897 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:39,902 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,904 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,911 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,914 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,917 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,921 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,928 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,934 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,938 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-14T17:45:39,943 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-14T17:45:39,955 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:39,957 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:39,962 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,963 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,967 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,971 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,974 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,979 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,984 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,987 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-14T17:45:39,992 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-14T17:45:40,001 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:40,003 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:40,008 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,009 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,016 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,020 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,023 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,027 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,038 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,046 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-14T17:45:40,050 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-14T17:45:40,073 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:40,075 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:40,087 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-14T17:45:40,091 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,093 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,097 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,100 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,104 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,114 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,120 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,125 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-14T17:45:40,131 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:40,132 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:40,137 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,139 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,145 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,149 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,152 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,156 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,162 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,168 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,173 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-14T17:45:40,179 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-14T17:45:40,190 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:40,192 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:40,197 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,199 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,203 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,206 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,210 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,214 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,219 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-14T17:45:40,222 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-14T17:45:40,230 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0 2022-12-14T17:45:40,233 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:40,236 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:40,241 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,244 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,248 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,252 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,257 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,262 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,268 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,272 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-14T17:45:40,277 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-14T17:45:40,285 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:40,286 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:40,291 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,295 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,299 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,302 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,306 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,309 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-14T17:45:40,313 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-14T17:45:40,318 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:40,319 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:40,324 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,326 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,330 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,333 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,336 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,340 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,345 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,349 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-14T17:45:40,354 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-14T17:45:40,362 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:40,364 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:40,369 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,371 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,375 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,378 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,382 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,386 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,390 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,393 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-14T17:45:40,398 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-14T17:45:40,405 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields 2022-12-14T17:45:40,408 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2022-12-14T17:45:40,410 copying build/lib/vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2022-12-14T17:45:40,416 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:40,417 copying build/lib/vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:40,423 copying build/lib/vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-14T17:45:40,428 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:40,430 copying build/lib/vermouth/tests/data/force_fields/pepplane/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:40,433 copying build/lib/vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:40,437 copying build/lib/vermouth/tests/data/force_fields/pepplane/ala.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-14T17:45:40,440 copying build/lib/vermouth/tests/data/1bta.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,451 copying build/lib/vermouth/tests/data/6E8W.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,618 copying build/lib/vermouth/tests/data/2dn2.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,663 copying build/lib/vermouth/tests/data/dna-short.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,668 copying build/lib/vermouth/tests/data/heme.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,672 copying build/lib/vermouth/tests/data/ala5.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,677 copying build/lib/vermouth/tests/data/ala5_cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,682 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings 2022-12-14T17:45:40,686 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test 2022-12-14T17:45:40,689 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-14T17:45:40,692 copying build/lib/vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-14T17:45:40,697 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:40,700 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:40,704 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-14T17:45:40,708 copying build/lib/vermouth/tests/data/2QWO.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,734 copying build/lib/vermouth/tests/data/dssp_1bta.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-14T17:45:40,738 copying build/lib/vermouth/tests/test_ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,743 copying build/lib/vermouth/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,748 copying build/lib/vermouth/tests/test_average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,752 copying build/lib/vermouth/tests/test_map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,756 copying build/lib/vermouth/tests/test_ptm_detection.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,760 copying build/lib/vermouth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,764 copying build/lib/vermouth/tests/test_repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,769 copying build/lib/vermouth/tests/test_map_input.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,773 copying build/lib/vermouth/tests/test_do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,779 copying build/lib/vermouth/tests/helper_functions.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,783 copying build/lib/vermouth/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,786 copying build/lib/vermouth/tests/test_grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,792 creating build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-14T17:45:40,793 copying build/lib/vermouth/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-14T17:45:40,797 copying build/lib/vermouth/tests/integration_tests/test_integration.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-14T17:45:40,801 copying build/lib/vermouth/tests/test_add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,805 copying build/lib/vermouth/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,809 copying build/lib/vermouth/tests/test_edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,814 copying build/lib/vermouth/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,819 copying build/lib/vermouth/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,823 copying build/lib/vermouth/tests/test_geometry.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,828 copying build/lib/vermouth/tests/test_make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,832 copying build/lib/vermouth/tests/test_sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,836 copying build/lib/vermouth/tests/test_mapping_integrative.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,840 copying build/lib/vermouth/tests/test_dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,845 copying build/lib/vermouth/tests/molecule_strategies.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,849 copying build/lib/vermouth/tests/test_ismags.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,854 copying build/lib/vermouth/tests/test_annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,859 copying build/lib/vermouth/tests/test_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,862 copying build/lib/vermouth/tests/test_ff_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,869 copying build/lib/vermouth/tests/test_apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,874 copying build/lib/vermouth/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,881 copying build/lib/vermouth/tests/test_section_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,885 creating build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-14T17:45:40,887 copying build/lib/vermouth/tests/gmx/test_gro.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-14T17:45:40,893 copying build/lib/vermouth/tests/gmx/test_itp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-14T17:45:40,897 copying build/lib/vermouth/tests/test_go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,900 copying build/lib/vermouth/tests/test_links.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,904 copying build/lib/vermouth/tests/test_name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,909 copying build/lib/vermouth/tests/test_version.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,913 copying build/lib/vermouth/tests/test_file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,917 copying build/lib/vermouth/tests/test_native_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-14T17:45:40,922 creating build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,924 copying build/lib/vermouth/processors/gro_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,927 copying build/lib/vermouth/processors/name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,931 copying build/lib/vermouth/processors/rename_modified_residues.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,934 copying build/lib/vermouth/processors/add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,938 copying build/lib/vermouth/processors/annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,942 copying build/lib/vermouth/processors/processor.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,945 copying build/lib/vermouth/processors/go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,950 copying build/lib/vermouth/processors/tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,953 copying build/lib/vermouth/processors/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,956 copying build/lib/vermouth/processors/set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,960 copying build/lib/vermouth/processors/sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,963 copying build/lib/vermouth/processors/apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,969 copying build/lib/vermouth/processors/do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,975 copying build/lib/vermouth/processors/merge_all_molecules.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,979 copying build/lib/vermouth/processors/repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,984 copying build/lib/vermouth/processors/pdb_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,987 copying build/lib/vermouth/processors/attach_mass.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,991 copying build/lib/vermouth/processors/merge_chains.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,994 copying build/lib/vermouth/processors/make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:40,999 copying build/lib/vermouth/processors/quote.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,002 copying build/lib/vermouth/processors/canonicalize_modifications.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,007 copying build/lib/vermouth/processors/locate_charge_dummies.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,011 copying build/lib/vermouth/processors/average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,015 copying build/lib/vermouth/processors/apply_posres.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,019 copying build/lib/vermouth/processors/do_links.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-14T17:45:41,024 copying build/lib/vermouth/file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,028 copying build/lib/vermouth/ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,035 copying build/lib/vermouth/system.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,040 creating build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,041 copying build/lib/vermouth/gmx/itp_read.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,046 copying build/lib/vermouth/gmx/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,050 copying build/lib/vermouth/gmx/itp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,055 copying build/lib/vermouth/gmx/gro.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,059 copying build/lib/vermouth/gmx/rtp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-14T17:45:41,064 copying build/lib/vermouth/map_input.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,070 creating build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-14T17:45:41,072 copying build/lib/vermouth/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-14T17:45:41,077 copying build/lib/vermouth/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-14T17:45:41,081 copying build/lib/vermouth/geometry.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,084 copying build/lib/vermouth/molecule.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-14T17:45:41,091 running install_egg_info 2022-12-14T17:45:41,105 Copying vermouth.egg-info to build/bdist.linux-armv7l/wheel/vermouth-0.9.0-py3.7.egg-info 2022-12-14T17:45:41,134 running install_scripts 2022-12-14T17:45:41,136 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.0.data 2022-12-14T17:45:41,137 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.0.data/scripts 2022-12-14T17:45:41,140 copying build/scripts-3.7/martinize2 -> build/bdist.linux-armv7l/wheel/vermouth-0.9.0.data/scripts 2022-12-14T17:45:41,146 changing mode of build/bdist.linux-armv7l/wheel/vermouth-0.9.0.data/scripts/martinize2 to 755 2022-12-14T17:45:41,194 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.0.dist-info/WHEEL 2022-12-14T17:45:41,199 creating '/tmp/pip-wheel-khpxezfw/.tmp-0ei3qom5/vermouth-0.9.0-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-14T17:45:41,205 adding 'vermouth/__init__.py' 2022-12-14T17:45:41,210 adding 'vermouth/citation_parser.py' 2022-12-14T17:45:41,215 adding 'vermouth/edge_tuning.py' 2022-12-14T17:45:41,228 adding 'vermouth/ffinput.py' 2022-12-14T17:45:41,232 adding 'vermouth/file_writer.py' 2022-12-14T17:45:41,236 adding 'vermouth/forcefield.py' 2022-12-14T17:45:41,239 adding 'vermouth/geometry.py' 2022-12-14T17:45:41,244 adding 'vermouth/graph_utils.py' 2022-12-14T17:45:41,258 adding 'vermouth/ismags.py' 2022-12-14T17:45:41,263 adding 'vermouth/log_helpers.py' 2022-12-14T17:45:41,270 adding 'vermouth/map_input.py' 2022-12-14T17:45:41,280 adding 'vermouth/map_parser.py' 2022-12-14T17:45:41,296 adding 'vermouth/molecule.py' 2022-12-14T17:45:41,304 adding 'vermouth/parser_utils.py' 2022-12-14T17:45:41,308 adding 'vermouth/selectors.py' 2022-12-14T17:45:41,311 adding 'vermouth/system.py' 2022-12-14T17:45:41,314 adding 'vermouth/truncating_formatter.py' 2022-12-14T17:45:41,317 adding 'vermouth/utils.py' 2022-12-14T17:45:41,321 adding 'vermouth/data/quotes.txt' 2022-12-14T17:45:41,332 adding 'vermouth/data/force_fields/amber/aminoacids.rtp' 2022-12-14T17:45:41,335 adding 'vermouth/data/force_fields/amber/modifications.ff' 2022-12-14T17:45:41,341 adding 'vermouth/data/force_fields/charmm/aminoacids.rtp' 2022-12-14T17:45:41,344 adding 'vermouth/data/force_fields/charmm/modifications.ff' 2022-12-14T17:45:41,867 adding 'vermouth/data/force_fields/charmm/small_molecule_charmm.ff' 2022-12-14T17:45:41,911 adding 'vermouth/data/force_fields/elnedyn21/aminoacids.ff' 2022-12-14T17:45:41,914 adding 'vermouth/data/force_fields/elnedyn21/citations.bib' 2022-12-14T17:45:41,916 adding 'vermouth/data/force_fields/elnedyn21/general.ff' 2022-12-14T17:45:41,919 adding 'vermouth/data/force_fields/elnedyn21/modifications.ff' 2022-12-14T17:45:41,924 adding 'vermouth/data/force_fields/elnedyn22/aminoacids.ff' 2022-12-14T17:45:41,927 adding 'vermouth/data/force_fields/elnedyn22/citations.bib' 2022-12-14T17:45:41,930 adding 'vermouth/data/force_fields/elnedyn22/general.ff' 2022-12-14T17:45:41,932 adding 'vermouth/data/force_fields/elnedyn22/modifications.ff' 2022-12-14T17:45:41,938 adding 'vermouth/data/force_fields/elnedyn22p/aminoacids.ff' 2022-12-14T17:45:41,941 adding 'vermouth/data/force_fields/elnedyn22p/citations.bib' 2022-12-14T17:45:41,944 adding 'vermouth/data/force_fields/elnedyn22p/general.ff' 2022-12-14T17:45:41,946 adding 'vermouth/data/force_fields/elnedyn22p/modifications.ff' 2022-12-14T17:45:41,957 adding 'vermouth/data/force_fields/gromos/aminoacids.rtp' 2022-12-14T17:45:41,963 adding 'vermouth/data/force_fields/gromos/cofactors.ff' 2022-12-14T17:45:41,965 adding 'vermouth/data/force_fields/gromos/modifications.ff' 2022-12-14T17:45:41,972 adding 'vermouth/data/force_fields/martini22/aminoacids.ff' 2022-12-14T17:45:41,975 adding 'vermouth/data/force_fields/martini22/citations.bib' 2022-12-14T17:45:41,977 adding 'vermouth/data/force_fields/martini22/general.ff' 2022-12-14T17:45:41,980 adding 'vermouth/data/force_fields/martini22/modifications.ff' 2022-12-14T17:45:41,983 adding 'vermouth/data/force_fields/martini22/nucleotides.ff' 2022-12-14T17:45:41,990 adding 'vermouth/data/force_fields/martini22p/aminoacids.ff' 2022-12-14T17:45:41,993 adding 'vermouth/data/force_fields/martini22p/citations.bib' 2022-12-14T17:45:41,996 adding 'vermouth/data/force_fields/martini22p/general.ff' 2022-12-14T17:45:41,998 adding 'vermouth/data/force_fields/martini22p/modifications.ff' 2022-12-14T17:45:42,006 adding 'vermouth/data/force_fields/martini3001/aminoacids.ff' 2022-12-14T17:45:42,009 adding 'vermouth/data/force_fields/martini3001/citations.bib' 2022-12-14T17:45:42,012 adding 'vermouth/data/force_fields/martini3001/general.ff' 2022-12-14T17:45:42,015 adding 'vermouth/data/force_fields/martini3001/modifications.ff' 2022-12-14T17:45:42,019 adding 'vermouth/data/force_fields/martini3001/small_molecule_martini3.ff' 2022-12-14T17:45:42,025 adding 'vermouth/data/force_fields/martini30b32/aminoacids.ff' 2022-12-14T17:45:42,028 adding 'vermouth/data/force_fields/martini30b32/citations.bib' 2022-12-14T17:45:42,030 adding 'vermouth/data/force_fields/martini30b32/modifications.ff' 2022-12-14T17:45:42,033 adding 'vermouth/data/force_fields/martini30b32/small_molecules.ff' 2022-12-14T17:45:42,039 adding 'vermouth/data/force_fields/martini30dev/aminoacids.ff' 2022-12-14T17:45:42,042 adding 'vermouth/data/force_fields/martini30dev/citations.bib' 2022-12-14T17:45:42,044 adding 'vermouth/data/force_fields/martini30dev/modifications.ff' 2022-12-14T17:45:42,051 adding 'vermouth/data/mappings/ala.charmm36.map' 2022-12-14T17:45:42,053 adding 'vermouth/data/mappings/ala.gromos.map' 2022-12-14T17:45:42,056 adding 'vermouth/data/mappings/arg.charmm36.map' 2022-12-14T17:45:42,059 adding 'vermouth/data/mappings/arg.charmm36.martini22p.map' 2022-12-14T17:45:42,061 adding 'vermouth/data/mappings/arg.gromos.map' 2022-12-14T17:45:42,064 adding 'vermouth/data/mappings/asn.charmm36.map' 2022-12-14T17:45:42,067 adding 'vermouth/data/mappings/asn.charmm36.martini22p.map' 2022-12-14T17:45:42,069 adding 'vermouth/data/mappings/asn.gromos.map' 2022-12-14T17:45:42,072 adding 'vermouth/data/mappings/asp.charmm36.map' 2022-12-14T17:45:42,075 adding 'vermouth/data/mappings/asp.charmm36.martini22p.map' 2022-12-14T17:45:42,077 adding 'vermouth/data/mappings/asp.gromos.map' 2022-12-14T17:45:42,079 adding 'vermouth/data/mappings/asp0.gromos.map' 2022-12-14T17:45:42,083 adding 'vermouth/data/mappings/chol.charmm36.map' 2022-12-14T17:45:42,085 adding 'vermouth/data/mappings/cys.charmm36.map' 2022-12-14T17:45:42,088 adding 'vermouth/data/mappings/cys.gromos.map' 2022-12-14T17:45:42,091 adding 'vermouth/data/mappings/dmpc.charmm36.map' 2022-12-14T17:45:42,095 adding 'vermouth/data/mappings/dopc.charmm36.map' 2022-12-14T17:45:42,099 adding 'vermouth/data/mappings/dppc.charmm36.map' 2022-12-14T17:45:42,102 adding 'vermouth/data/mappings/dppg.charmm36.map' 2022-12-14T17:45:42,105 adding 'vermouth/data/mappings/fmn.gromos.map' 2022-12-14T17:45:42,107 adding 'vermouth/data/mappings/gln.charmm36.map' 2022-12-14T17:45:42,110 adding 'vermouth/data/mappings/gln.charmm36.martini22p.map' 2022-12-14T17:45:42,112 adding 'vermouth/data/mappings/gln.gromos.map' 2022-12-14T17:45:42,115 adding 'vermouth/data/mappings/glu.charmm36.map' 2022-12-14T17:45:42,117 adding 'vermouth/data/mappings/glu.charmm36.martini22p.map' 2022-12-14T17:45:42,120 adding 'vermouth/data/mappings/glu.gromos.map' 2022-12-14T17:45:42,122 adding 'vermouth/data/mappings/glu0.gromos.map' 2022-12-14T17:45:42,125 adding 'vermouth/data/mappings/gly.charmm36.map' 2022-12-14T17:45:42,127 adding 'vermouth/data/mappings/gly.gromos.map' 2022-12-14T17:45:42,130 adding 'vermouth/data/mappings/his.charmm36.map' 2022-12-14T17:45:42,132 adding 'vermouth/data/mappings/his.gromos.map' 2022-12-14T17:45:42,135 adding 'vermouth/data/mappings/hsd.charmm36.map' 2022-12-14T17:45:42,137 adding 'vermouth/data/mappings/hse.charmm36.map' 2022-12-14T17:45:42,140 adding 'vermouth/data/mappings/hsp.charmm36.map' 2022-12-14T17:45:42,143 adding 'vermouth/data/mappings/ile.charmm36.map' 2022-12-14T17:45:42,145 adding 'vermouth/data/mappings/ile.gromos.map' 2022-12-14T17:45:42,147 adding 'vermouth/data/mappings/leu.charmm36.map' 2022-12-14T17:45:42,150 adding 'vermouth/data/mappings/leu.gromos.map' 2022-12-14T17:45:42,152 adding 'vermouth/data/mappings/lys.charmm36.map' 2022-12-14T17:45:42,155 adding 'vermouth/data/mappings/lys.charmm36.martini22p.map' 2022-12-14T17:45:42,157 adding 'vermouth/data/mappings/lys.gromos.map' 2022-12-14T17:45:42,160 adding 'vermouth/data/mappings/met.charmm36.map' 2022-12-14T17:45:42,162 adding 'vermouth/data/mappings/met.gromos.map' 2022-12-14T17:45:42,165 adding 'vermouth/data/mappings/modifications.gromos.mapping' 2022-12-14T17:45:42,167 adding 'vermouth/data/mappings/modifications.mapping' 2022-12-14T17:45:42,170 adding 'vermouth/data/mappings/nad.gromos.map' 2022-12-14T17:45:42,173 adding 'vermouth/data/mappings/phe.charmm36.map' 2022-12-14T17:45:42,175 adding 'vermouth/data/mappings/phe.gromos.map' 2022-12-14T17:45:42,179 adding 'vermouth/data/mappings/popc.charmm36.map' 2022-12-14T17:45:42,182 adding 'vermouth/data/mappings/pope.charmm36.map' 2022-12-14T17:45:42,186 adding 'vermouth/data/mappings/popg.charmm36.map' 2022-12-14T17:45:42,190 adding 'vermouth/data/mappings/pops.charmm36.map' 2022-12-14T17:45:42,192 adding 'vermouth/data/mappings/pro.charmm36.map' 2022-12-14T17:45:42,195 adding 'vermouth/data/mappings/pro.gromos.map' 2022-12-14T17:45:42,197 adding 'vermouth/data/mappings/ser.charmm36.map' 2022-12-14T17:45:42,200 adding 'vermouth/data/mappings/ser.charmm36.martini22p.map' 2022-12-14T17:45:42,202 adding 'vermouth/data/mappings/ser.gromos.map' 2022-12-14T17:45:42,205 adding 'vermouth/data/mappings/thr.charmm36.map' 2022-12-14T17:45:42,207 adding 'vermouth/data/mappings/thr.charmm36.martini22p.map' 2022-12-14T17:45:42,210 adding 'vermouth/data/mappings/thr.gromos.map' 2022-12-14T17:45:42,212 adding 'vermouth/data/mappings/tpp.gromos.map' 2022-12-14T17:45:42,215 adding 'vermouth/data/mappings/trp.charmm36.map' 2022-12-14T17:45:42,217 adding 'vermouth/data/mappings/trp.gromos.map' 2022-12-14T17:45:42,220 adding 'vermouth/data/mappings/tyr.charmm36.map' 2022-12-14T17:45:42,223 adding 'vermouth/data/mappings/tyr.gromos.map' 2022-12-14T17:45:42,225 adding 'vermouth/data/mappings/val.charmm36.map' 2022-12-14T17:45:42,228 adding 'vermouth/data/mappings/val.gromos.map' 2022-12-14T17:45:42,232 adding 'vermouth/data/mappings/elnedyn/ala.charmm36.map' 2022-12-14T17:45:42,235 adding 'vermouth/data/mappings/elnedyn/arg.charmm36.map' 2022-12-14T17:45:42,238 adding 'vermouth/data/mappings/elnedyn/asn.charmm36.map' 2022-12-14T17:45:42,240 adding 'vermouth/data/mappings/elnedyn/asp.charmm36.map' 2022-12-14T17:45:42,243 adding 'vermouth/data/mappings/elnedyn/chol.charmm36.map' 2022-12-14T17:45:42,246 adding 'vermouth/data/mappings/elnedyn/cys.charmm36.map' 2022-12-14T17:45:42,249 adding 'vermouth/data/mappings/elnedyn/dmpc.charmm36.map' 2022-12-14T17:45:42,253 adding 'vermouth/data/mappings/elnedyn/dopc.charmm36.map' 2022-12-14T17:45:42,257 adding 'vermouth/data/mappings/elnedyn/dppc.charmm36.map' 2022-12-14T17:45:42,260 adding 'vermouth/data/mappings/elnedyn/dppg.charmm36.map' 2022-12-14T17:45:42,262 adding 'vermouth/data/mappings/elnedyn/gln.charmm36.map' 2022-12-14T17:45:42,265 adding 'vermouth/data/mappings/elnedyn/glu.charmm36.map' 2022-12-14T17:45:42,267 adding 'vermouth/data/mappings/elnedyn/gly.charmm36.map' 2022-12-14T17:45:42,270 adding 'vermouth/data/mappings/elnedyn/his.charmm36.map' 2022-12-14T17:45:42,273 adding 'vermouth/data/mappings/elnedyn/ile.charmm36.map' 2022-12-14T17:45:42,275 adding 'vermouth/data/mappings/elnedyn/leu.charmm36.map' 2022-12-14T17:45:42,278 adding 'vermouth/data/mappings/elnedyn/lys.charmm36.map' 2022-12-14T17:45:42,281 adding 'vermouth/data/mappings/elnedyn/met.charmm36.map' 2022-12-14T17:45:42,283 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping' 2022-12-14T17:45:42,285 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping' 2022-12-14T17:45:42,288 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping' 2022-12-14T17:45:42,291 adding 'vermouth/data/mappings/elnedyn/phe.charmm36.map' 2022-12-14T17:45:42,294 adding 'vermouth/data/mappings/elnedyn/popc.charmm36.map' 2022-12-14T17:45:42,298 adding 'vermouth/data/mappings/elnedyn/pope.charmm36.map' 2022-12-14T17:45:42,301 adding 'vermouth/data/mappings/elnedyn/popg.charmm36.map' 2022-12-14T17:45:42,305 adding 'vermouth/data/mappings/elnedyn/pops.charmm36.map' 2022-12-14T17:45:42,307 adding 'vermouth/data/mappings/elnedyn/pro.charmm36.map' 2022-12-14T17:45:42,310 adding 'vermouth/data/mappings/elnedyn/ser.charmm36.map' 2022-12-14T17:45:42,313 adding 'vermouth/data/mappings/elnedyn/thr.charmm36.map' 2022-12-14T17:45:42,315 adding 'vermouth/data/mappings/elnedyn/trp.charmm36.map' 2022-12-14T17:45:42,318 adding 'vermouth/data/mappings/elnedyn/tyr.charmm36.map' 2022-12-14T17:45:42,321 adding 'vermouth/data/mappings/elnedyn/val.charmm36.map' 2022-12-14T17:45:42,325 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,327 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,330 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,333 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,335 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,338 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,341 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,343 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,348 adding 'vermouth/data/mappings/elnedyn21/ala.charmm36.map' 2022-12-14T17:45:42,351 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,353 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.map' 2022-12-14T17:45:42,356 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,359 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.map' 2022-12-14T17:45:42,362 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,364 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.map' 2022-12-14T17:45:42,367 adding 'vermouth/data/mappings/elnedyn21/cys.charmm36.map' 2022-12-14T17:45:42,369 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,372 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.map' 2022-12-14T17:45:42,374 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,377 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.map' 2022-12-14T17:45:42,380 adding 'vermouth/data/mappings/elnedyn21/gly.charmm36.map' 2022-12-14T17:45:42,382 adding 'vermouth/data/mappings/elnedyn21/his.charmm36.map' 2022-12-14T17:45:42,385 adding 'vermouth/data/mappings/elnedyn21/ile.charmm36.map' 2022-12-14T17:45:42,387 adding 'vermouth/data/mappings/elnedyn21/leu.charmm36.map' 2022-12-14T17:45:42,390 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,393 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.map' 2022-12-14T17:45:42,396 adding 'vermouth/data/mappings/elnedyn21/met.charmm36.map' 2022-12-14T17:45:42,398 adding 'vermouth/data/mappings/elnedyn21/modifications.mapping' 2022-12-14T17:45:42,401 adding 'vermouth/data/mappings/elnedyn21/phe.charmm36.map' 2022-12-14T17:45:42,403 adding 'vermouth/data/mappings/elnedyn21/pro.charmm36.map' 2022-12-14T17:45:42,406 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,409 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.map' 2022-12-14T17:45:42,411 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map' 2022-12-14T17:45:42,414 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.map' 2022-12-14T17:45:42,417 adding 'vermouth/data/mappings/elnedyn21/trp.charmm36.map' 2022-12-14T17:45:42,419 adding 'vermouth/data/mappings/elnedyn21/tyr.charmm36.map' 2022-12-14T17:45:42,422 adding 'vermouth/data/mappings/elnedyn21/val.charmm36.map' 2022-12-14T17:45:42,429 adding 'vermouth/data/mappings/martini3001/ala.amber.map' 2022-12-14T17:45:42,432 adding 'vermouth/data/mappings/martini3001/ala.charmm36.map' 2022-12-14T17:45:42,434 adding 'vermouth/data/mappings/martini3001/antr.charmm36.map' 2022-12-14T17:45:42,437 adding 'vermouth/data/mappings/martini3001/arg.amber.map' 2022-12-14T17:45:42,440 adding 'vermouth/data/mappings/martini3001/arg.charmm36.map' 2022-12-14T17:45:42,443 adding 'vermouth/data/mappings/martini3001/ash.amber.map' 2022-12-14T17:45:42,445 adding 'vermouth/data/mappings/martini3001/asn.amber.map' 2022-12-14T17:45:42,448 adding 'vermouth/data/mappings/martini3001/asn.charmm36.map' 2022-12-14T17:45:42,451 adding 'vermouth/data/mappings/martini3001/asp.amber.map' 2022-12-14T17:45:42,454 adding 'vermouth/data/mappings/martini3001/asp.charmm36.map' 2022-12-14T17:45:42,456 adding 'vermouth/data/mappings/martini3001/aspp.charmm36.map' 2022-12-14T17:45:42,459 adding 'vermouth/data/mappings/martini3001/bald.charmm36.map' 2022-12-14T17:45:42,461 adding 'vermouth/data/mappings/martini3001/benz.charmm36.map' 2022-12-14T17:45:42,463 adding 'vermouth/data/mappings/martini3001/c3.charmm36.map' 2022-12-14T17:45:42,466 adding 'vermouth/data/mappings/martini3001/chxe.charmm36.map' 2022-12-14T17:45:42,468 adding 'vermouth/data/mappings/martini3001/cpen.charmm36.map' 2022-12-14T17:45:42,470 adding 'vermouth/data/mappings/martini3001/cume.charmm36.map' 2022-12-14T17:45:42,473 adding 'vermouth/data/mappings/martini3001/cys.amber.map' 2022-12-14T17:45:42,475 adding 'vermouth/data/mappings/martini3001/cys.charmm36.map' 2022-12-14T17:45:42,478 adding 'vermouth/data/mappings/martini3001/diol.charmm36.map' 2022-12-14T17:45:42,480 adding 'vermouth/data/mappings/martini3001/diox.charmm36.map' 2022-12-14T17:45:42,483 adding 'vermouth/data/mappings/martini3001/dman.charmm36.map' 2022-12-14T17:45:42,485 adding 'vermouth/data/mappings/martini3001/eben.charmm36.map' 2022-12-14T17:45:42,487 adding 'vermouth/data/mappings/martini3001/fura.charmm36.map' 2022-12-14T17:45:42,490 adding 'vermouth/data/mappings/martini3001/glh.amber.map' 2022-12-14T17:45:42,493 adding 'vermouth/data/mappings/martini3001/gln.amber.map' 2022-12-14T17:45:42,495 adding 'vermouth/data/mappings/martini3001/gln.charmm36.map' 2022-12-14T17:45:42,498 adding 'vermouth/data/mappings/martini3001/glu.amber.map' 2022-12-14T17:45:42,500 adding 'vermouth/data/mappings/martini3001/glu.charmm36.map' 2022-12-14T17:45:42,503 adding 'vermouth/data/mappings/martini3001/glup.charmm36.map' 2022-12-14T17:45:42,506 adding 'vermouth/data/mappings/martini3001/gly.amber.map' 2022-12-14T17:45:42,508 adding 'vermouth/data/mappings/martini3001/gly.charmm36.map' 2022-12-14T17:45:42,511 adding 'vermouth/data/mappings/martini3001/hid.amber.map' 2022-12-14T17:45:42,513 adding 'vermouth/data/mappings/martini3001/hie.amber.map' 2022-12-14T17:45:42,516 adding 'vermouth/data/mappings/martini3001/hip.amber.map' 2022-12-14T17:45:42,519 adding 'vermouth/data/mappings/martini3001/his.amber.map' 2022-12-14T17:45:42,521 adding 'vermouth/data/mappings/martini3001/his.charmm36.map' 2022-12-14T17:45:42,524 adding 'vermouth/data/mappings/martini3001/hsd.charmm36.map' 2022-12-14T17:45:42,527 adding 'vermouth/data/mappings/martini3001/hse.charmm36.map' 2022-12-14T17:45:42,529 adding 'vermouth/data/mappings/martini3001/hsp.charmm36.map' 2022-12-14T17:45:42,532 adding 'vermouth/data/mappings/martini3001/ile.amber.map' 2022-12-14T17:45:42,535 adding 'vermouth/data/mappings/martini3001/ile.charmm36.map' 2022-12-14T17:45:42,537 adding 'vermouth/data/mappings/martini3001/imia.charmm36.map' 2022-12-14T17:45:42,539 adding 'vermouth/data/mappings/martini3001/inda.charmm36.map' 2022-12-14T17:45:42,542 adding 'vermouth/data/mappings/martini3001/indo.charmm36.map' 2022-12-14T17:45:42,544 adding 'vermouth/data/mappings/martini3001/leu.amber.map' 2022-12-14T17:45:42,547 adding 'vermouth/data/mappings/martini3001/leu.charmm36.map' 2022-12-14T17:45:42,550 adding 'vermouth/data/mappings/martini3001/lsn.charmm36.map' 2022-12-14T17:45:42,553 adding 'vermouth/data/mappings/martini3001/lyn.amber.map' 2022-12-14T17:45:42,555 adding 'vermouth/data/mappings/martini3001/lys.amber.map' 2022-12-14T17:45:42,558 adding 'vermouth/data/mappings/martini3001/lys.charmm36.map' 2022-12-14T17:45:42,560 adding 'vermouth/data/mappings/martini3001/mboa.charmm36.map' 2022-12-14T17:45:42,563 adding 'vermouth/data/mappings/martini3001/mcpe.charmm36.map' 2022-12-14T17:45:42,565 adding 'vermouth/data/mappings/martini3001/meob.charmm36.map' 2022-12-14T17:45:42,567 adding 'vermouth/data/mappings/martini3001/met.amber.map' 2022-12-14T17:45:42,570 adding 'vermouth/data/mappings/martini3001/met.charmm36.map' 2022-12-14T17:45:42,572 adding 'vermouth/data/mappings/martini3001/mind.charmm36.map' 2022-12-14T17:45:42,575 adding 'vermouth/data/mappings/martini3001/modifications.amber.mapping' 2022-12-14T17:45:42,577 adding 'vermouth/data/mappings/martini3001/modifications.charmm36.mapping' 2022-12-14T17:45:42,580 adding 'vermouth/data/mappings/martini3001/mxyl.charmm36.map' 2022-12-14T17:45:42,582 adding 'vermouth/data/mappings/martini3001/naft.charmm36.map' 2022-12-14T17:45:42,585 adding 'vermouth/data/mappings/martini3001/nitb.charmm36.map' 2022-12-14T17:45:42,587 adding 'vermouth/data/mappings/martini3001/oxyl.charmm36.map' 2022-12-14T17:45:42,590 adding 'vermouth/data/mappings/martini3001/pcro.charmm36.map' 2022-12-14T17:45:42,592 adding 'vermouth/data/mappings/martini3001/phe.amber.map' 2022-12-14T17:45:42,595 adding 'vermouth/data/mappings/martini3001/phe.charmm36.map' 2022-12-14T17:45:42,597 adding 'vermouth/data/mappings/martini3001/phen.charmm36.map' 2022-12-14T17:45:42,600 adding 'vermouth/data/mappings/martini3001/phmk.charmm36.map' 2022-12-14T17:45:42,602 adding 'vermouth/data/mappings/martini3001/prld.charmm36.map' 2022-12-14T17:45:42,605 adding 'vermouth/data/mappings/martini3001/pro.amber.map' 2022-12-14T17:45:42,607 adding 'vermouth/data/mappings/martini3001/pro.charmm36.map' 2022-12-14T17:45:42,610 adding 'vermouth/data/mappings/martini3001/pxyl.charmm36.map' 2022-12-14T17:45:42,612 adding 'vermouth/data/mappings/martini3001/pyr1.charmm36.map' 2022-12-14T17:45:42,614 adding 'vermouth/data/mappings/martini3001/pyrd.charmm36.map' 2022-12-14T17:45:42,617 adding 'vermouth/data/mappings/martini3001/pyrl.charmm36.map' 2022-12-14T17:45:42,619 adding 'vermouth/data/mappings/martini3001/pyrm.charmm36.map' 2022-12-14T17:45:42,622 adding 'vermouth/data/mappings/martini3001/qinl.charmm36.map' 2022-12-14T17:45:42,624 adding 'vermouth/data/mappings/martini3001/ser.amber.map' 2022-12-14T17:45:42,627 adding 'vermouth/data/mappings/martini3001/ser.charmm36.map' 2022-12-14T17:45:42,630 adding 'vermouth/data/mappings/martini3001/sm139.charmm36.map' 2022-12-14T17:45:42,632 adding 'vermouth/data/mappings/martini3001/styr.charmm36.map' 2022-12-14T17:45:42,634 adding 'vermouth/data/mappings/martini3001/thaz.charmm36.map' 2022-12-14T17:45:42,637 adding 'vermouth/data/mappings/martini3001/thf.charmm36.map' 2022-12-14T17:45:42,639 adding 'vermouth/data/mappings/martini3001/thip.charmm36.map' 2022-12-14T17:45:42,641 adding 'vermouth/data/mappings/martini3001/thp.charmm36.map' 2022-12-14T17:45:42,644 adding 'vermouth/data/mappings/martini3001/thr.amber.map' 2022-12-14T17:45:42,646 adding 'vermouth/data/mappings/martini3001/thr.charmm36.map' 2022-12-14T17:45:42,649 adding 'vermouth/data/mappings/martini3001/tolu.charmm36.map' 2022-12-14T17:45:42,652 adding 'vermouth/data/mappings/martini3001/trp.amber.map' 2022-12-14T17:45:42,654 adding 'vermouth/data/mappings/martini3001/trp.charmm36.map' 2022-12-14T17:45:42,657 adding 'vermouth/data/mappings/martini3001/tyr.amber.map' 2022-12-14T17:45:42,659 adding 'vermouth/data/mappings/martini3001/tyr.charmm36.map' 2022-12-14T17:45:42,662 adding 'vermouth/data/mappings/martini3001/val.amber.map' 2022-12-14T17:45:42,665 adding 'vermouth/data/mappings/martini3001/val.charmm36.map' 2022-12-14T17:45:42,667 adding 'vermouth/data/mappings/martini3001/zimi.charmm36.map' 2022-12-14T17:45:42,670 adding 'vermouth/data/mappings/martini3001/zthp.charmm36.map' 2022-12-14T17:45:42,672 adding 'vermouth/data/mappings/martini3001/zthz.charmm36.map' 2022-12-14T17:45:42,676 adding 'vermouth/data/mappings/martini30b32/ala.charmm36.map' 2022-12-14T17:45:42,679 adding 'vermouth/data/mappings/martini30b32/arg.charmm36.map' 2022-12-14T17:45:42,682 adding 'vermouth/data/mappings/martini30b32/asn.charmm36.map' 2022-12-14T17:45:42,684 adding 'vermouth/data/mappings/martini30b32/asp.charmm36.map' 2022-12-14T17:45:42,687 adding 'vermouth/data/mappings/martini30b32/benz.charmm36.map' 2022-12-14T17:45:42,689 adding 'vermouth/data/mappings/martini30b32/cys.charmm36.map' 2022-12-14T17:45:42,692 adding 'vermouth/data/mappings/martini30b32/gln.charmm36.map' 2022-12-14T17:45:42,695 adding 'vermouth/data/mappings/martini30b32/glu.charmm36.map' 2022-12-14T17:45:42,697 adding 'vermouth/data/mappings/martini30b32/gly.charmm36.map' 2022-12-14T17:45:42,700 adding 'vermouth/data/mappings/martini30b32/his.charmm36.map' 2022-12-14T17:45:42,703 adding 'vermouth/data/mappings/martini30b32/hsd.charmm36.map' 2022-12-14T17:45:42,705 adding 'vermouth/data/mappings/martini30b32/ile.charmm36.map' 2022-12-14T17:45:42,708 adding 'vermouth/data/mappings/martini30b32/leu.charmm36.map' 2022-12-14T17:45:42,711 adding 'vermouth/data/mappings/martini30b32/lys.charmm36.map' 2022-12-14T17:45:42,713 adding 'vermouth/data/mappings/martini30b32/met.charmm36.map' 2022-12-14T17:45:42,716 adding 'vermouth/data/mappings/martini30b32/modifications.mapping' 2022-12-14T17:45:42,718 adding 'vermouth/data/mappings/martini30b32/phe.charmm36.map' 2022-12-14T17:45:42,721 adding 'vermouth/data/mappings/martini30b32/pro.charmm36.map' 2022-12-14T17:45:42,724 adding 'vermouth/data/mappings/martini30b32/ser.charmm36.map' 2022-12-14T17:45:42,726 adding 'vermouth/data/mappings/martini30b32/thr.charmm36.map' 2022-12-14T17:45:42,730 adding 'vermouth/data/mappings/martini30b32/trp.charmm36.map' 2022-12-14T17:45:42,733 adding 'vermouth/data/mappings/martini30b32/tyr.charmm36.map' 2022-12-14T17:45:42,735 adding 'vermouth/data/mappings/martini30b32/val.charmm36.map' 2022-12-14T17:45:42,739 adding 'vermouth/dssp/__init__.py' 2022-12-14T17:45:42,746 adding 'vermouth/dssp/dssp.py' 2022-12-14T17:45:42,750 adding 'vermouth/gmx/__init__.py' 2022-12-14T17:45:42,754 adding 'vermouth/gmx/gro.py' 2022-12-14T17:45:42,758 adding 'vermouth/gmx/itp.py' 2022-12-14T17:45:42,764 adding 'vermouth/gmx/itp_read.py' 2022-12-14T17:45:42,984 adding 'vermouth/gmx/rtp.py' 2022-12-14T17:45:42,990 adding 'vermouth/graphing/grappa.py' 2022-12-14T17:45:42,994 adding 'vermouth/pdb/__init__.py' 2022-12-14T17:45:43,000 adding 'vermouth/pdb/pdb.py' 2022-12-14T17:45:43,005 adding 'vermouth/processors/__init__.py' 2022-12-14T17:45:43,008 adding 'vermouth/processors/add_molecule_edges.py' 2022-12-14T17:45:43,013 adding 'vermouth/processors/annotate_mut_mod.py' 2022-12-14T17:45:43,015 adding 'vermouth/processors/apply_posres.py' 2022-12-14T17:45:43,022 adding 'vermouth/processors/apply_rubber_band.py' 2022-12-14T17:45:43,025 adding 'vermouth/processors/attach_mass.py' 2022-12-14T17:45:43,028 adding 'vermouth/processors/average_beads.py' 2022-12-14T17:45:43,034 adding 'vermouth/processors/canonicalize_modifications.py' 2022-12-14T17:45:43,039 adding 'vermouth/processors/do_links.py' 2022-12-14T17:45:43,050 adding 'vermouth/processors/do_mapping.py' 2022-12-14T17:45:43,054 adding 'vermouth/processors/go_vs_includes.py' 2022-12-14T17:45:43,057 adding 'vermouth/processors/gro_reader.py' 2022-12-14T17:45:43,061 adding 'vermouth/processors/locate_charge_dummies.py' 2022-12-14T17:45:43,066 adding 'vermouth/processors/make_bonds.py' 2022-12-14T17:45:43,069 adding 'vermouth/processors/merge_all_molecules.py' 2022-12-14T17:45:43,072 adding 'vermouth/processors/merge_chains.py' 2022-12-14T17:45:43,075 adding 'vermouth/processors/name_moltype.py' 2022-12-14T17:45:43,078 adding 'vermouth/processors/pdb_reader.py' 2022-12-14T17:45:43,081 adding 'vermouth/processors/processor.py' 2022-12-14T17:45:43,084 adding 'vermouth/processors/quote.py' 2022-12-14T17:45:43,087 adding 'vermouth/processors/rename_modified_residues.py' 2022-12-14T17:45:43,095 adding 'vermouth/processors/repair_graph.py' 2022-12-14T17:45:43,098 adding 'vermouth/processors/set_molecule_meta.py' 2022-12-14T17:45:43,101 adding 'vermouth/processors/sort_molecule_atoms.py' 2022-12-14T17:45:43,104 adding 'vermouth/processors/tune_cystein_bridges.py' 2022-12-14T17:45:43,109 adding 'vermouth/tests/__init__.py' 2022-12-14T17:45:43,111 adding 'vermouth/tests/datafiles.py' 2022-12-14T17:45:43,114 adding 'vermouth/tests/helper_functions.py' 2022-12-14T17:45:43,118 adding 'vermouth/tests/molecule_strategies.py' 2022-12-14T17:45:43,121 adding 'vermouth/tests/test_add_molecule_edges.py' 2022-12-14T17:45:43,125 adding 'vermouth/tests/test_annotate_mut_mod.py' 2022-12-14T17:45:43,130 adding 'vermouth/tests/test_apply_rubber_band.py' 2022-12-14T17:45:43,133 adding 'vermouth/tests/test_average_beads.py' 2022-12-14T17:45:43,139 adding 'vermouth/tests/test_do_mapping.py' 2022-12-14T17:45:43,145 adding 'vermouth/tests/test_dssp.py' 2022-12-14T17:45:43,151 adding 'vermouth/tests/test_edge_tuning.py' 2022-12-14T17:45:43,160 adding 'vermouth/tests/test_ff_files.py' 2022-12-14T17:45:43,167 adding 'vermouth/tests/test_ffinput.py' 2022-12-14T17:45:43,170 adding 'vermouth/tests/test_file_writer.py' 2022-12-14T17:45:43,174 adding 'vermouth/tests/test_forcefield.py' 2022-12-14T17:45:43,177 adding 'vermouth/tests/test_geometry.py' 2022-12-14T17:45:43,180 adding 'vermouth/tests/test_go_vs_includes.py' 2022-12-14T17:45:43,185 adding 'vermouth/tests/test_graph_utils.py' 2022-12-14T17:45:43,190 adding 'vermouth/tests/test_grappa.py' 2022-12-14T17:45:43,195 adding 'vermouth/tests/test_ismags.py' 2022-12-14T17:45:43,200 adding 'vermouth/tests/test_itp_files.py' 2022-12-14T17:45:43,204 adding 'vermouth/tests/test_links.py' 2022-12-14T17:45:43,209 adding 'vermouth/tests/test_logging.py' 2022-12-14T17:45:43,212 adding 'vermouth/tests/test_make_bonds.py' 2022-12-14T17:45:43,219 adding 'vermouth/tests/test_map_input.py' 2022-12-14T17:45:43,223 adding 'vermouth/tests/test_map_parser.py' 2022-12-14T17:45:43,227 adding 'vermouth/tests/test_mapping_integrative.py' 2022-12-14T17:45:43,235 adding 'vermouth/tests/test_molecule.py' 2022-12-14T17:45:43,240 adding 'vermouth/tests/test_name_moltype.py' 2022-12-14T17:45:43,243 adding 'vermouth/tests/test_native_forcefield.py' 2022-12-14T17:45:43,246 adding 'vermouth/tests/test_ptm_detection.py' 2022-12-14T17:45:43,251 adding 'vermouth/tests/test_repair_graph.py' 2022-12-14T17:45:43,254 adding 'vermouth/tests/test_section_parser.py' 2022-12-14T17:45:43,258 adding 'vermouth/tests/test_selectors.py' 2022-12-14T17:45:43,261 adding 'vermouth/tests/test_set_molecule_meta.py' 2022-12-14T17:45:43,263 adding 'vermouth/tests/test_sort_molecule_atoms.py' 2022-12-14T17:45:43,266 adding 'vermouth/tests/test_tune_cystein_bridges.py' 2022-12-14T17:45:43,270 adding 'vermouth/tests/test_utils.py' 2022-12-14T17:45:43,273 adding 'vermouth/tests/test_version.py' 2022-12-14T17:45:43,327 adding 'vermouth/tests/data/1bta.pdb' 2022-12-14T17:45:43,382 adding 'vermouth/tests/data/1bta_mutated.pdb' 2022-12-14T17:45:43,549 adding 'vermouth/tests/data/2QWO.pdb' 2022-12-14T17:45:43,916 adding 'vermouth/tests/data/2dn2.pdb' 2022-12-14T17:45:45,270 adding 'vermouth/tests/data/6E8W.pdb' 2022-12-14T17:45:45,340 adding 'vermouth/tests/data/ala5.pdb' 2022-12-14T17:45:45,343 adding 'vermouth/tests/data/ala5_cg.pdb' 2022-12-14T17:45:45,348 adding 'vermouth/tests/data/dna-short.pdb' 2022-12-14T17:45:45,356 adding 'vermouth/tests/data/dssp_1bta.ssd' 2022-12-14T17:45:45,360 adding 'vermouth/tests/data/heme.pdb' 2022-12-14T17:45:45,362 adding 'vermouth/tests/data/tri_alanine.pdb' 2022-12-14T17:45:45,370 adding 'vermouth/tests/data/force_fields/martini-test/aminoacids.ff' 2022-12-14T17:45:45,374 adding 'vermouth/tests/data/force_fields/pepplane/ala.ff' 2022-12-14T17:45:45,376 adding 'vermouth/tests/data/force_fields/pepplane/general.ff' 2022-12-14T17:45:45,379 adding 'vermouth/tests/data/force_fields/pepplane/modifications.ff' 2022-12-14T17:45:45,388 adding 'vermouth/tests/data/force_fields/universal-test/aminoacids.rtp' 2022-12-14T17:45:45,391 adding 'vermouth/tests/data/force_fields/universal-test/modifications.ff' 2022-12-14T17:45:45,396 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/README' 2022-12-14T17:45:45,399 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb' 2022-12-14T17:45:45,403 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb' 2022-12-14T17:45:45,405 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation' 2022-12-14T17:45:45,408 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command' 2022-12-14T17:45:45,410 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp' 2022-12-14T17:45:45,413 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top' 2022-12-14T17:45:45,417 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README' 2022-12-14T17:45:45,430 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb' 2022-12-14T17:45:45,435 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb' 2022-12-14T17:45:45,440 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd' 2022-12-14T17:45:45,443 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation' 2022-12-14T17:45:45,445 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command' 2022-12-14T17:45:45,449 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp' 2022-12-14T17:45:45,451 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output' 2022-12-14T17:45:45,454 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top' 2022-12-14T17:45:45,457 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README' 2022-12-14T17:45:45,479 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb' 2022-12-14T17:45:45,485 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb' 2022-12-14T17:45:45,490 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd' 2022-12-14T17:45:45,493 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation' 2022-12-14T17:45:45,495 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command' 2022-12-14T17:45:45,501 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp' 2022-12-14T17:45:45,503 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output' 2022-12-14T17:45:45,506 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top' 2022-12-14T17:45:45,509 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README' 2022-12-14T17:45:45,519 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb' 2022-12-14T17:45:45,524 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb' 2022-12-14T17:45:45,528 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd' 2022-12-14T17:45:45,530 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation' 2022-12-14T17:45:45,533 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command' 2022-12-14T17:45:45,536 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp' 2022-12-14T17:45:45,539 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output' 2022-12-14T17:45:45,541 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top' 2022-12-14T17:45:45,546 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/README' 2022-12-14T17:45:45,711 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb' 2022-12-14T17:45:45,743 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb' 2022-12-14T17:45:45,747 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top' 2022-12-14T17:45:45,771 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd' 2022-12-14T17:45:45,775 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation' 2022-12-14T17:45:45,777 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command' 2022-12-14T17:45:45,827 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp' 2022-12-14T17:45:45,832 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output' 2022-12-14T17:45:45,836 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README' 2022-12-14T17:45:45,999 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb' 2022-12-14T17:45:46,031 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb' 2022-12-14T17:45:46,034 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top' 2022-12-14T17:45:46,059 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd' 2022-12-14T17:45:46,063 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation' 2022-12-14T17:45:46,065 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command' 2022-12-14T17:45:46,115 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp' 2022-12-14T17:45:46,120 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output' 2022-12-14T17:45:46,142 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb' 2022-12-14T17:45:46,146 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/README' 2022-12-14T17:45:46,152 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb' 2022-12-14T17:45:46,155 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top' 2022-12-14T17:45:46,160 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd' 2022-12-14T17:45:46,166 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd' 2022-12-14T17:45:46,169 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation' 2022-12-14T17:45:46,171 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command' 2022-12-14T17:45:46,179 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp' 2022-12-14T17:45:46,186 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp' 2022-12-14T17:45:46,189 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output' 2022-12-14T17:45:46,261 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb' 2022-12-14T17:45:46,266 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README' 2022-12-14T17:45:46,287 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb' 2022-12-14T17:45:46,290 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top' 2022-12-14T17:45:46,295 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd' 2022-12-14T17:45:46,298 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation' 2022-12-14T17:45:46,301 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command' 2022-12-14T17:45:46,341 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp' 2022-12-14T17:45:46,346 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output' 2022-12-14T17:45:46,350 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/README' 2022-12-14T17:45:46,371 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb' 2022-12-14T17:45:46,379 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb' 2022-12-14T17:45:46,381 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top' 2022-12-14T17:45:46,387 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd' 2022-12-14T17:45:46,390 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation' 2022-12-14T17:45:46,392 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command' 2022-12-14T17:45:46,400 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp' 2022-12-14T17:45:46,403 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output' 2022-12-14T17:45:46,407 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/README' 2022-12-14T17:45:46,428 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb' 2022-12-14T17:45:46,436 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb' 2022-12-14T17:45:46,438 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top' 2022-12-14T17:45:46,444 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd' 2022-12-14T17:45:46,446 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation' 2022-12-14T17:45:46,449 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command' 2022-12-14T17:45:46,456 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp' 2022-12-14T17:45:46,459 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output' 2022-12-14T17:45:46,463 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/README' 2022-12-14T17:45:46,487 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb' 2022-12-14T17:45:46,495 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb' 2022-12-14T17:45:46,501 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd' 2022-12-14T17:45:46,503 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation' 2022-12-14T17:45:46,506 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command' 2022-12-14T17:45:46,514 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp' 2022-12-14T17:45:46,519 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output' 2022-12-14T17:45:46,522 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top' 2022-12-14T17:45:46,525 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/README' 2022-12-14T17:45:46,574 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb' 2022-12-14T17:45:46,589 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb' 2022-12-14T17:45:46,600 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd' 2022-12-14T17:45:46,603 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation' 2022-12-14T17:45:46,605 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command' 2022-12-14T17:45:46,624 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp' 2022-12-14T17:45:46,630 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output' 2022-12-14T17:45:46,649 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp' 2022-12-14T17:45:46,653 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top' 2022-12-14T17:45:46,656 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README' 2022-12-14T17:45:46,705 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb' 2022-12-14T17:45:46,720 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb' 2022-12-14T17:45:46,731 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd' 2022-12-14T17:45:46,734 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation' 2022-12-14T17:45:46,737 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command' 2022-12-14T17:45:46,757 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp' 2022-12-14T17:45:46,761 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output' 2022-12-14T17:45:46,780 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp' 2022-12-14T17:45:46,783 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top' 2022-12-14T17:45:46,787 adding 'vermouth/tests/data/integration_tests/tier-1/villin/README' 2022-12-14T17:45:46,797 adding 'vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb' 2022-12-14T17:45:46,803 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb' 2022-12-14T17:45:46,806 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation' 2022-12-14T17:45:46,808 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command' 2022-12-14T17:45:46,813 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp' 2022-12-14T17:45:46,815 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output' 2022-12-14T17:45:46,818 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top' 2022-12-14T17:45:46,823 adding 'vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping' 2022-12-14T17:45:46,827 adding 'vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping' 2022-12-14T17:45:46,830 adding 'vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping' 2022-12-14T17:45:46,837 adding 'vermouth/tests/gmx/test_gro.py' 2022-12-14T17:45:46,841 adding 'vermouth/tests/gmx/test_itp.py' 2022-12-14T17:45:46,844 adding 'vermouth/tests/integration_tests/__init__.py' 2022-12-14T17:45:46,848 adding 'vermouth/tests/integration_tests/test_integration.py' 2022-12-14T17:45:46,853 adding 'vermouth/tests/pdb/test_read_pdb.py' 2022-12-14T17:45:46,856 adding 'vermouth/tests/pdb/test_write_pdb.py' 2022-12-14T17:45:46,870 adding 'vermouth-0.9.0.data/scripts/martinize2' 2022-12-14T17:45:46,878 adding 'vermouth-0.9.0.dist-info/LICENSE' 2022-12-14T17:45:46,881 adding 'vermouth-0.9.0.dist-info/METADATA' 2022-12-14T17:45:46,883 adding 'vermouth-0.9.0.dist-info/WHEEL' 2022-12-14T17:45:46,885 adding 'vermouth-0.9.0.dist-info/pbr.json' 2022-12-14T17:45:46,887 adding 'vermouth-0.9.0.dist-info/top_level.txt' 2022-12-14T17:45:46,910 adding 'vermouth-0.9.0.dist-info/RECORD' 2022-12-14T17:45:47,028 removing build/bdist.linux-armv7l/wheel 2022-12-14T17:45:47,343 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.mappings' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:47,343 !! 2022-12-14T17:45:47,344 ############################ 2022-12-14T17:45:47,344 # Package would be ignored # 2022-12-14T17:45:47,345 ############################ 2022-12-14T17:45:47,345 Python recognizes 'vermouth.tests.data.mappings' as an importable package, 2022-12-14T17:45:47,345 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:47,346 'vermouth.tests.data.mappings' has been automatically added to the distribution only 2022-12-14T17:45:47,346 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:47,346 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:47,347 Please make sure that 'vermouth.tests.data.mappings' is included as a package by using 2022-12-14T17:45:47,347 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:47,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:47,348 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:47,349 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:47,350 documentation page. 2022-12-14T17:45:47,351 !! 2022-12-14T17:45:47,351 check.warn(importable) 2022-12-14T17:45:47,352 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.gmx' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:47,352 !! 2022-12-14T17:45:47,353 ############################ 2022-12-14T17:45:47,353 # Package would be ignored # 2022-12-14T17:45:47,354 ############################ 2022-12-14T17:45:47,354 Python recognizes 'vermouth.tests.gmx' as an importable package, 2022-12-14T17:45:47,354 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:47,355 'vermouth.tests.gmx' has been automatically added to the distribution only 2022-12-14T17:45:47,355 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:47,355 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:47,356 Please make sure that 'vermouth.tests.gmx' is included as a package by using 2022-12-14T17:45:47,356 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:47,357 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:47,357 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:47,358 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:47,358 documentation page. 2022-12-14T17:45:47,359 !! 2022-12-14T17:45:47,360 check.warn(importable) 2022-12-14T17:45:47,360 /tmp/pip-build-env-ikwnapuc/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.pdb' as data is deprecated, please list it in `packages`. 2022-12-14T17:45:47,361 !! 2022-12-14T17:45:47,362 ############################ 2022-12-14T17:45:47,362 # Package would be ignored # 2022-12-14T17:45:47,363 ############################ 2022-12-14T17:45:47,363 Python recognizes 'vermouth.tests.pdb' as an importable package, 2022-12-14T17:45:47,364 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T17:45:47,365 'vermouth.tests.pdb' has been automatically added to the distribution only 2022-12-14T17:45:47,365 because it may contain data files, but this behavior is likely to change 2022-12-14T17:45:47,365 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T17:45:47,366 Please make sure that 'vermouth.tests.pdb' is included as a package by using 2022-12-14T17:45:47,367 the `packages` configuration field or the proper discovery methods 2022-12-14T17:45:47,367 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T17:45:47,367 instead of `find_packages(...)`/`find:`). 2022-12-14T17:45:47,369 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T17:45:47,370 documentation page. 2022-12-14T17:45:47,371 !! 2022-12-14T17:45:47,372 check.warn(importable) 2022-12-14T17:45:47,598 Building wheel for vermouth (pyproject.toml): finished with status 'done' 2022-12-14T17:45:47,775 Created wheel for vermouth: filename=vermouth-0.9.0-py2.py3-none-any.whl size=2658094 sha256=af7e389a682ab361277dba8792edfca3ef6ca68d5884be63696c233885c5d31c 2022-12-14T17:45:47,777 Stored in directory: /tmp/pip-ephem-wheel-cache-k14unsi9/wheels/25/ad/13/a70aa8da0cc905d945eaecadc376aaacfe79df4d24e3165907 2022-12-14T17:45:47,853 Successfully built vermouth 2022-12-14T17:45:48,045 Removed build tracker: '/tmp/pip-build-tracker-htyf5l99'