2022-12-14T18:59:35,376 Created temporary directory: /tmp/pip-ephem-wheel-cache-uqhirjod 2022-12-14T18:59:35,378 Created temporary directory: /tmp/pip-build-tracker-eltft23r 2022-12-14T18:59:35,378 Initialized build tracking at /tmp/pip-build-tracker-eltft23r 2022-12-14T18:59:35,379 Created build tracker: /tmp/pip-build-tracker-eltft23r 2022-12-14T18:59:35,379 Entered build tracker: /tmp/pip-build-tracker-eltft23r 2022-12-14T18:59:35,379 Created temporary directory: /tmp/pip-wheel-40aj10k_ 2022-12-14T18:59:35,382 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T18:59:35,385 Created temporary directory: /tmp/pip-ephem-wheel-cache-sr5e3r4g 2022-12-14T18:59:35,412 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T18:59:35,415 2 location(s) to search for versions of pyscreener: 2022-12-14T18:59:35,415 * https://pypi.org/simple/pyscreener/ 2022-12-14T18:59:35,415 * https://www.piwheels.org/simple/pyscreener/ 2022-12-14T18:59:35,416 Fetching project page and analyzing links: https://pypi.org/simple/pyscreener/ 2022-12-14T18:59:35,416 Getting page https://pypi.org/simple/pyscreener/ 2022-12-14T18:59:35,418 Found index url https://pypi.org/simple 2022-12-14T18:59:35,472 Fetched page https://pypi.org/simple/pyscreener/ as application/vnd.pypi.simple.v1+json 2022-12-14T18:59:35,475 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/66/1e/8559ecede9df6163b383d027ed0a220f695b6dbd038e8b89b474ddc31792/pyscreener-1.0.0-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,476 Found link https://files.pythonhosted.org/packages/11/1e/954b5c35a9610873f68bc11d3c443f5d0a48b498da58907efb4757e46deb/pyscreener-1.0.0.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7), version: 1.0.0 2022-12-14T18:59:35,476 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/1e/8f/bc6d181644f1f558a623b94c348e3472ddd35bb3755c2650dd6f453dc75c/pyscreener-1.1.0-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,477 Found link https://files.pythonhosted.org/packages/82/87/e52b171788a6aaa285ed5dfb12abe18a1e3f86965010e9aca8bc56c0551d/pyscreener-1.1.0.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7), version: 1.1.0 2022-12-14T18:59:35,477 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/84/bf/f88d2d1aad810d76becd99f66997db718ecd0de6c37b2f28847c19668521/pyscreener-1.1.1-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,478 Found link https://files.pythonhosted.org/packages/c6/43/dbfcb70973c4fd94ce255225e2a21a5bdf356f65d5736edd7d2ad4324a83/pyscreener-1.1.1.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.7), version: 1.1.1 2022-12-14T18:59:35,478 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/0e/a0/3247230ed9d38ef87915238b122b1dec38bb8f0939f30fe165abba0eb6a9/pyscreener-1.2.0-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,478 Found link https://files.pythonhosted.org/packages/28/7e/eaf02f107640d62389b2faa0b321a63a05e3f898f869cfe3dfc155d9167b/pyscreener-1.2.0.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8), version: 1.2.0 2022-12-14T18:59:35,479 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/18/f4/0c76bb507cc37c4b0c80211c84bf22a49da6b5596f718331c2b8cddc3452/pyscreener-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,479 Found link https://files.pythonhosted.org/packages/50/f1/e64693e1af3522b8f622dd17401ad7a20d36bb84ab56a58bfd772429ec92/pyscreener-1.2.1.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8), version: 1.2.1 2022-12-14T18:59:35,480 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/74/9f/e346513e22fb3afd64d84ea4ab21e415a4ee3d5bf55ede07e9be7000363a/pyscreener-1.2.2-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,480 Found link https://files.pythonhosted.org/packages/9d/e1/d4076b9ff057c3d989d179fb0998415e710c9392ae2fee7e4b9fe4ae1b23/pyscreener-1.2.2.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8), version: 1.2.2 2022-12-14T18:59:35,480 Skipping link: No binaries permitted for pyscreener: https://files.pythonhosted.org/packages/31/6e/f93de1683ad7e1e64a2f1c5d2065c9661d1c9e32ada75b594f19f1d9f687/pyscreener-1.2.3-py3-none-any.whl (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,481 Found link https://files.pythonhosted.org/packages/74/fd/2fce49327547477e7f44fb7aee3d1b8dbc7acc01e3a8f8aa9f8062e4993a/pyscreener-1.2.3.tar.gz (from https://pypi.org/simple/pyscreener/) (requires-python:>=3.8), version: 1.2.3 2022-12-14T18:59:35,481 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyscreener/ 2022-12-14T18:59:35,482 Getting page https://www.piwheels.org/simple/pyscreener/ 2022-12-14T18:59:35,482 Found index url https://www.piwheels.org/simple 2022-12-14T18:59:35,670 Fetched page https://www.piwheels.org/simple/pyscreener/ as text/html 2022-12-14T18:59:35,673 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.2.2-py3-none-any.whl#sha256=f9b4cc8549d88522077a88de59caaa8e9c5c60b48b97721ff4d0d708c45d7fe2 (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,673 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.2.1-py3-none-any.whl#sha256=79a6b2f0d29490bbe4504551299db501c6e9b645704965b5a28262bc49640570 (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,673 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.2.0-py3-none-any.whl#sha256=81e59a7f41c1b582e6ee795242aa767a51f5ed697272d4301903db12daa90083 (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.8) 2022-12-14T18:59:35,674 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.1.1-py3-none-any.whl#sha256=0b8c878009ff5448fe3f3b3f1d64ead547e5caeb518c20fd1ce52b097a1bbd99 (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,674 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.1.0-py3-none-any.whl#sha256=8b3247c7155c55ff153d5bdc5c8c943bf6d92318d42a7a0f56cadf0e52e3bf2f (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,674 Skipping link: No binaries permitted for pyscreener: https://www.piwheels.org/simple/pyscreener/pyscreener-1.0.0-py3-none-any.whl#sha256=c9a05300c65dfed88554a9a32afc875a3d0198e2f69bd6cd4ea57c096c5e232e (from https://www.piwheels.org/simple/pyscreener/) (requires-python:>=3.7) 2022-12-14T18:59:35,674 Skipping link: not a file: https://www.piwheels.org/simple/pyscreener/ 2022-12-14T18:59:35,674 Skipping link: not a file: https://pypi.org/simple/pyscreener/ 2022-12-14T18:59:35,693 Given no hashes to check 1 links for project 'pyscreener': discarding no candidates 2022-12-14T18:59:35,710 Collecting pyscreener==1.2.3 2022-12-14T18:59:35,712 Created temporary directory: /tmp/pip-unpack-vvcxyple 2022-12-14T18:59:35,915 Downloading pyscreener-1.2.3.tar.gz (367 kB) 2022-12-14T18:59:36,227 Added pyscreener==1.2.3 from https://files.pythonhosted.org/packages/74/fd/2fce49327547477e7f44fb7aee3d1b8dbc7acc01e3a8f8aa9f8062e4993a/pyscreener-1.2.3.tar.gz to build tracker '/tmp/pip-build-tracker-eltft23r' 2022-12-14T18:59:36,233 Created temporary directory: /tmp/pip-build-env-3u4sx69x 2022-12-14T18:59:36,241 Installing build dependencies: started 2022-12-14T18:59:36,242 Running command pip subprocess to install build dependencies 2022-12-14T18:59:37,461 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-14T18:59:37,850 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-14T18:59:37,875 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-14T18:59:39,532 Collecting setuptools>=45 2022-12-14T18:59:39,646 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-14T18:59:39,914 Collecting wheel 2022-12-14T18:59:39,932 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-14T18:59:40,250 Collecting setuptools_scm[toml]>=6.2 2022-12-14T18:59:40,268 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-7.0.5-py3-none-any.whl (42 kB) 2022-12-14T18:59:40,477 Collecting packaging>=20.0 2022-12-14T18:59:40,494 Using cached https://www.piwheels.org/simple/packaging/packaging-22.0-py3-none-any.whl (42 kB) 2022-12-14T18:59:40,596 Collecting typing-extensions 2022-12-14T18:59:40,613 Using cached https://www.piwheels.org/simple/typing-extensions/typing_extensions-4.4.0-py3-none-any.whl (26 kB) 2022-12-14T18:59:40,740 Collecting tomli>=1.0.0 2022-12-14T18:59:40,764 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2022-12-14T18:59:43,005 Installing collected packages: wheel, typing-extensions, tomli, setuptools, packaging, setuptools_scm 2022-12-14T18:59:43,155 Creating /tmp/pip-build-env-3u4sx69x/overlay/bin 2022-12-14T18:59:43,158 changing mode of /tmp/pip-build-env-3u4sx69x/overlay/bin/wheel to 755 2022-12-14T18:59:46,142 Successfully installed packaging-22.0 setuptools-65.6.3 setuptools_scm-7.0.5 tomli-2.0.1 typing-extensions-4.4.0 wheel-0.38.4 2022-12-14T18:59:46,157 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-14T18:59:46,157 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-14T18:59:46,439 Installing build dependencies: finished with status 'done' 2022-12-14T18:59:46,444 Getting requirements to build wheel: started 2022-12-14T18:59:46,445 Running command Getting requirements to build wheel 2022-12-14T18:59:47,442 running egg_info 2022-12-14T18:59:47,449 writing pyscreener.egg-info/PKG-INFO 2022-12-14T18:59:47,452 writing dependency_links to pyscreener.egg-info/dependency_links.txt 2022-12-14T18:59:47,455 writing entry points to pyscreener.egg-info/entry_points.txt 2022-12-14T18:59:47,457 writing requirements to pyscreener.egg-info/requires.txt 2022-12-14T18:59:47,458 writing top-level names to pyscreener.egg-info/top_level.txt 2022-12-14T18:59:47,510 listing git files failed - pretending there aren't any 2022-12-14T18:59:47,518 reading manifest file 'pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:47,527 adding license file 'LICENSE' 2022-12-14T18:59:47,533 writing manifest file 'pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:47,668 Getting requirements to build wheel: finished with status 'done' 2022-12-14T18:59:47,680 Created temporary directory: /tmp/pip-modern-metadata-b3h1a612 2022-12-14T18:59:47,683 Preparing metadata (pyproject.toml): started 2022-12-14T18:59:47,684 Running command Preparing metadata (pyproject.toml) 2022-12-14T18:59:48,558 running dist_info 2022-12-14T18:59:48,581 creating /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info 2022-12-14T18:59:48,587 writing /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/PKG-INFO 2022-12-14T18:59:48,590 writing dependency_links to /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/dependency_links.txt 2022-12-14T18:59:48,593 writing entry points to /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/entry_points.txt 2022-12-14T18:59:48,595 writing requirements to /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/requires.txt 2022-12-14T18:59:48,596 writing top-level names to /tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/top_level.txt 2022-12-14T18:59:48,597 writing manifest file '/tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:48,646 listing git files failed - pretending there aren't any 2022-12-14T18:59:48,655 reading manifest file '/tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:48,660 adding license file 'LICENSE' 2022-12-14T18:59:48,663 writing manifest file '/tmp/pip-modern-metadata-b3h1a612/pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:48,665 creating '/tmp/pip-modern-metadata-b3h1a612/pyscreener-1.2.3.dist-info' 2022-12-14T18:59:48,905 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-14T18:59:48,913 Source in /tmp/pip-wheel-40aj10k_/pyscreener_4899f2090ed745d982f9b3b221048d98 has version 1.2.3, which satisfies requirement pyscreener==1.2.3 from https://files.pythonhosted.org/packages/74/fd/2fce49327547477e7f44fb7aee3d1b8dbc7acc01e3a8f8aa9f8062e4993a/pyscreener-1.2.3.tar.gz 2022-12-14T18:59:48,914 Removed pyscreener==1.2.3 from https://files.pythonhosted.org/packages/74/fd/2fce49327547477e7f44fb7aee3d1b8dbc7acc01e3a8f8aa9f8062e4993a/pyscreener-1.2.3.tar.gz from build tracker '/tmp/pip-build-tracker-eltft23r' 2022-12-14T18:59:48,921 Created temporary directory: /tmp/pip-unpack-az3md6bj 2022-12-14T18:59:48,921 Building wheels for collected packages: pyscreener 2022-12-14T18:59:48,927 Created temporary directory: /tmp/pip-wheel-ot37oijd 2022-12-14T18:59:48,927 Destination directory: /tmp/pip-wheel-ot37oijd 2022-12-14T18:59:48,930 Building wheel for pyscreener (pyproject.toml): started 2022-12-14T18:59:48,930 Running command Building wheel for pyscreener (pyproject.toml) 2022-12-14T18:59:49,810 running bdist_wheel 2022-12-14T18:59:49,851 running build 2022-12-14T18:59:49,851 running build_py 2022-12-14T18:59:49,861 creating build 2022-12-14T18:59:49,862 creating build/lib 2022-12-14T18:59:49,862 creating build/lib/pyscreener 2022-12-14T18:59:49,864 copying pyscreener/main.py -> build/lib/pyscreener 2022-12-14T18:59:49,866 copying pyscreener/warnings.py -> build/lib/pyscreener 2022-12-14T18:59:49,868 copying pyscreener/base.py -> build/lib/pyscreener 2022-12-14T18:59:49,870 copying pyscreener/_version.py -> build/lib/pyscreener 2022-12-14T18:59:49,872 copying pyscreener/supply.py -> build/lib/pyscreener 2022-12-14T18:59:49,875 copying pyscreener/args.py -> build/lib/pyscreener 2022-12-14T18:59:49,877 copying pyscreener/__init__.py -> build/lib/pyscreener 2022-12-14T18:59:49,879 copying pyscreener/exceptions.py -> build/lib/pyscreener 2022-12-14T18:59:49,881 creating build/lib/pyscreener/utils 2022-12-14T18:59:49,882 copying pyscreener/utils/pdbfix.py -> build/lib/pyscreener/utils 2022-12-14T18:59:49,884 copying pyscreener/utils/utils.py -> build/lib/pyscreener/utils 2022-12-14T18:59:49,886 copying pyscreener/utils/__init__.py -> build/lib/pyscreener/utils 2022-12-14T18:59:49,888 copying pyscreener/utils/autobox.py -> build/lib/pyscreener/utils 2022-12-14T18:59:49,891 creating build/lib/pyscreener/postprocessing 2022-12-14T18:59:49,892 copying pyscreener/postprocessing/cluster.py -> build/lib/pyscreener/postprocessing 2022-12-14T18:59:49,894 copying pyscreener/postprocessing/fingerprints.py -> build/lib/pyscreener/postprocessing 2022-12-14T18:59:49,897 copying pyscreener/postprocessing/__init__.py -> build/lib/pyscreener/postprocessing 2022-12-14T18:59:49,899 copying pyscreener/postprocessing/hist.py -> build/lib/pyscreener/postprocessing 2022-12-14T18:59:49,901 creating build/lib/pyscreener/docking 2022-12-14T18:59:49,902 copying pyscreener/docking/metadata.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,904 copying pyscreener/docking/result.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,906 copying pyscreener/docking/screen.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,909 copying pyscreener/docking/runner.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,911 copying pyscreener/docking/calculation.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,912 copying pyscreener/docking/utils.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,914 copying pyscreener/docking/__init__.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,916 copying pyscreener/docking/sim.py -> build/lib/pyscreener/docking 2022-12-14T18:59:49,919 creating build/lib/pyscreener/docking/vina 2022-12-14T18:59:49,920 copying pyscreener/docking/vina/metadata.py -> build/lib/pyscreener/docking/vina 2022-12-14T18:59:49,922 copying pyscreener/docking/vina/runner.py -> build/lib/pyscreener/docking/vina 2022-12-14T18:59:49,925 copying pyscreener/docking/vina/utils.py -> build/lib/pyscreener/docking/vina 2022-12-14T18:59:49,927 copying pyscreener/docking/vina/__init__.py -> build/lib/pyscreener/docking/vina 2022-12-14T18:59:49,929 creating build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,930 copying pyscreener/docking/dock/metadata.py -> build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,932 copying pyscreener/docking/dock/runner.py -> build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,935 copying pyscreener/docking/dock/utils.py -> build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,937 copying pyscreener/docking/dock/__init__.py -> build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,939 copying pyscreener/docking/dock/exceptions.py -> build/lib/pyscreener/docking/dock 2022-12-14T18:59:49,942 creating build/lib/pyscreener/docking/dock/scripts 2022-12-14T18:59:49,942 copying pyscreener/docking/dock/scripts/__init__.py -> build/lib/pyscreener/docking/dock/scripts 2022-12-14T18:59:49,944 running egg_info 2022-12-14T18:59:49,969 writing pyscreener.egg-info/PKG-INFO 2022-12-14T18:59:49,972 writing dependency_links to pyscreener.egg-info/dependency_links.txt 2022-12-14T18:59:49,974 writing entry points to pyscreener.egg-info/entry_points.txt 2022-12-14T18:59:49,975 writing requirements to pyscreener.egg-info/requires.txt 2022-12-14T18:59:49,976 writing top-level names to pyscreener.egg-info/top_level.txt 2022-12-14T18:59:50,014 listing git files failed - pretending there aren't any 2022-12-14T18:59:50,023 reading manifest file 'pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:50,028 adding license file 'LICENSE' 2022-12-14T18:59:50,034 writing manifest file 'pyscreener.egg-info/SOURCES.txt' 2022-12-14T18:59:50,037 /tmp/pip-build-env-3u4sx69x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyscreener.dft' as data is deprecated, please list it in `packages`. 2022-12-14T18:59:50,038 !! 2022-12-14T18:59:50,038 ############################ 2022-12-14T18:59:50,038 # Package would be ignored # 2022-12-14T18:59:50,038 ############################ 2022-12-14T18:59:50,038 Python recognizes 'pyscreener.dft' as an importable package, 2022-12-14T18:59:50,039 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T18:59:50,039 'pyscreener.dft' has been automatically added to the distribution only 2022-12-14T18:59:50,039 because it may contain data files, but this behavior is likely to change 2022-12-14T18:59:50,039 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T18:59:50,039 Please make sure that 'pyscreener.dft' is included as a package by using 2022-12-14T18:59:50,040 the `packages` configuration field or the proper discovery methods 2022-12-14T18:59:50,040 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T18:59:50,040 instead of `find_packages(...)`/`find:`). 2022-12-14T18:59:50,040 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T18:59:50,040 documentation page. 2022-12-14T18:59:50,041 !! 2022-12-14T18:59:50,041 check.warn(importable) 2022-12-14T18:59:50,041 /tmp/pip-build-env-3u4sx69x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyscreener.md' as data is deprecated, please list it in `packages`. 2022-12-14T18:59:50,041 !! 2022-12-14T18:59:50,042 ############################ 2022-12-14T18:59:50,042 # Package would be ignored # 2022-12-14T18:59:50,042 ############################ 2022-12-14T18:59:50,042 Python recognizes 'pyscreener.md' as an importable package, 2022-12-14T18:59:50,042 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T18:59:50,043 'pyscreener.md' has been automatically added to the distribution only 2022-12-14T18:59:50,043 because it may contain data files, but this behavior is likely to change 2022-12-14T18:59:50,043 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T18:59:50,043 Please make sure that 'pyscreener.md' is included as a package by using 2022-12-14T18:59:50,043 the `packages` configuration field or the proper discovery methods 2022-12-14T18:59:50,044 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T18:59:50,044 instead of `find_packages(...)`/`find:`). 2022-12-14T18:59:50,044 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T18:59:50,044 documentation page. 2022-12-14T18:59:50,045 !! 2022-12-14T18:59:50,045 check.warn(importable) 2022-12-14T18:59:50,045 /tmp/pip-build-env-3u4sx69x/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyscreener.preprocessing' as data is deprecated, please list it in `packages`. 2022-12-14T18:59:50,045 !! 2022-12-14T18:59:50,046 ############################ 2022-12-14T18:59:50,046 # Package would be ignored # 2022-12-14T18:59:50,046 ############################ 2022-12-14T18:59:50,046 Python recognizes 'pyscreener.preprocessing' as an importable package, 2022-12-14T18:59:50,046 but it is not listed in the `packages` configuration of setuptools. 2022-12-14T18:59:50,047 'pyscreener.preprocessing' has been automatically added to the distribution only 2022-12-14T18:59:50,047 because it may contain data files, but this behavior is likely to change 2022-12-14T18:59:50,047 in future versions of setuptools (and therefore is considered deprecated). 2022-12-14T18:59:50,047 Please make sure that 'pyscreener.preprocessing' is included as a package by using 2022-12-14T18:59:50,048 the `packages` configuration field or the proper discovery methods 2022-12-14T18:59:50,048 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-14T18:59:50,048 instead of `find_packages(...)`/`find:`). 2022-12-14T18:59:50,048 You can read more about "package discovery" and "data files" on setuptools 2022-12-14T18:59:50,048 documentation page. 2022-12-14T18:59:50,049 !! 2022-12-14T18:59:50,049 check.warn(importable) 2022-12-14T18:59:50,049 creating build/lib/pyscreener/dft 2022-12-14T18:59:50,049 copying pyscreener/dft/__init__.py -> build/lib/pyscreener/dft 2022-12-14T18:59:50,050 copying pyscreener/dft/dft.py -> build/lib/pyscreener/dft 2022-12-14T18:59:50,050 copying pyscreener/dft/preparation.py -> build/lib/pyscreener/dft 2022-12-14T18:59:50,052 creating build/lib/pyscreener/md 2022-12-14T18:59:50,053 copying pyscreener/md/__init__.py -> build/lib/pyscreener/md 2022-12-14T18:59:50,056 copying pyscreener/md/md.py -> build/lib/pyscreener/md 2022-12-14T18:59:50,058 copying pyscreener/md/preparation.py -> build/lib/pyscreener/md 2022-12-14T18:59:50,060 creating build/lib/pyscreener/preprocessing 2022-12-14T18:59:50,061 copying pyscreener/preprocessing/filter.py -> build/lib/pyscreener/preprocessing 2022-12-14T18:59:50,064 copying pyscreener/docking/dock/scripts/prep_rec.py2 -> build/lib/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,066 copying pyscreener/docking/dock/scripts/write_dms.py2 -> build/lib/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,092 installing to build/bdist.linux-armv7l/wheel 2022-12-14T18:59:50,093 running install 2022-12-14T18:59:50,118 running install_lib 2022-12-14T18:59:50,127 creating build/bdist.linux-armv7l 2022-12-14T18:59:50,127 creating build/bdist.linux-armv7l/wheel 2022-12-14T18:59:50,129 creating build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,131 creating build/bdist.linux-armv7l/wheel/pyscreener/dft 2022-12-14T18:59:50,132 copying build/lib/pyscreener/dft/preparation.py -> build/bdist.linux-armv7l/wheel/pyscreener/dft 2022-12-14T18:59:50,134 copying build/lib/pyscreener/dft/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/dft 2022-12-14T18:59:50,137 copying build/lib/pyscreener/dft/dft.py -> build/bdist.linux-armv7l/wheel/pyscreener/dft 2022-12-14T18:59:50,139 creating build/bdist.linux-armv7l/wheel/pyscreener/md 2022-12-14T18:59:50,140 copying build/lib/pyscreener/md/preparation.py -> build/bdist.linux-armv7l/wheel/pyscreener/md 2022-12-14T18:59:50,142 copying build/lib/pyscreener/md/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/md 2022-12-14T18:59:50,144 copying build/lib/pyscreener/md/md.py -> build/bdist.linux-armv7l/wheel/pyscreener/md 2022-12-14T18:59:50,146 copying build/lib/pyscreener/main.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,148 copying build/lib/pyscreener/warnings.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,150 copying build/lib/pyscreener/base.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,153 copying build/lib/pyscreener/_version.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,155 creating build/bdist.linux-armv7l/wheel/pyscreener/utils 2022-12-14T18:59:50,156 copying build/lib/pyscreener/utils/pdbfix.py -> build/bdist.linux-armv7l/wheel/pyscreener/utils 2022-12-14T18:59:50,158 copying build/lib/pyscreener/utils/utils.py -> build/bdist.linux-armv7l/wheel/pyscreener/utils 2022-12-14T18:59:50,160 copying build/lib/pyscreener/utils/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/utils 2022-12-14T18:59:50,162 copying build/lib/pyscreener/utils/autobox.py -> build/bdist.linux-armv7l/wheel/pyscreener/utils 2022-12-14T18:59:50,165 copying build/lib/pyscreener/supply.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,167 copying build/lib/pyscreener/args.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,170 copying build/lib/pyscreener/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,173 creating build/bdist.linux-armv7l/wheel/pyscreener/postprocessing 2022-12-14T18:59:50,174 copying build/lib/pyscreener/postprocessing/cluster.py -> build/bdist.linux-armv7l/wheel/pyscreener/postprocessing 2022-12-14T18:59:50,176 copying build/lib/pyscreener/postprocessing/fingerprints.py -> build/bdist.linux-armv7l/wheel/pyscreener/postprocessing 2022-12-14T18:59:50,178 copying build/lib/pyscreener/postprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/postprocessing 2022-12-14T18:59:50,180 copying build/lib/pyscreener/postprocessing/hist.py -> build/bdist.linux-armv7l/wheel/pyscreener/postprocessing 2022-12-14T18:59:50,183 creating build/bdist.linux-armv7l/wheel/pyscreener/preprocessing 2022-12-14T18:59:50,184 copying build/lib/pyscreener/preprocessing/filter.py -> build/bdist.linux-armv7l/wheel/pyscreener/preprocessing 2022-12-14T18:59:50,187 creating build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,188 copying build/lib/pyscreener/docking/metadata.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,190 copying build/lib/pyscreener/docking/result.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,192 copying build/lib/pyscreener/docking/screen.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,195 copying build/lib/pyscreener/docking/runner.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,197 creating build/bdist.linux-armv7l/wheel/pyscreener/docking/vina 2022-12-14T18:59:50,198 copying build/lib/pyscreener/docking/vina/metadata.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/vina 2022-12-14T18:59:50,200 copying build/lib/pyscreener/docking/vina/runner.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/vina 2022-12-14T18:59:50,203 copying build/lib/pyscreener/docking/vina/utils.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/vina 2022-12-14T18:59:50,205 copying build/lib/pyscreener/docking/vina/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/vina 2022-12-14T18:59:50,207 copying build/lib/pyscreener/docking/calculation.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,209 copying build/lib/pyscreener/docking/utils.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,211 copying build/lib/pyscreener/docking/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,213 copying build/lib/pyscreener/docking/sim.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking 2022-12-14T18:59:50,215 creating build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,216 copying build/lib/pyscreener/docking/dock/metadata.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,219 copying build/lib/pyscreener/docking/dock/runner.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,221 copying build/lib/pyscreener/docking/dock/utils.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,224 copying build/lib/pyscreener/docking/dock/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,226 creating build/bdist.linux-armv7l/wheel/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,227 copying build/lib/pyscreener/docking/dock/scripts/prep_rec.py2 -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,229 copying build/lib/pyscreener/docking/dock/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,231 copying build/lib/pyscreener/docking/dock/scripts/write_dms.py2 -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock/scripts 2022-12-14T18:59:50,233 copying build/lib/pyscreener/docking/dock/exceptions.py -> build/bdist.linux-armv7l/wheel/pyscreener/docking/dock 2022-12-14T18:59:50,235 copying build/lib/pyscreener/exceptions.py -> build/bdist.linux-armv7l/wheel/pyscreener 2022-12-14T18:59:50,236 running install_egg_info 2022-12-14T18:59:50,246 Copying pyscreener.egg-info to build/bdist.linux-armv7l/wheel/pyscreener-1.2.3-py3.9.egg-info 2022-12-14T18:59:50,259 running install_scripts 2022-12-14T18:59:50,350 creating build/bdist.linux-armv7l/wheel/pyscreener-1.2.3.dist-info/WHEEL 2022-12-14T18:59:50,352 creating '/tmp/pip-wheel-ot37oijd/.tmp-a8jd_i88/pyscreener-1.2.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-14T18:59:50,355 adding 'pyscreener/__init__.py' 2022-12-14T18:59:50,356 adding 'pyscreener/_version.py' 2022-12-14T18:59:50,358 adding 'pyscreener/args.py' 2022-12-14T18:59:50,359 adding 'pyscreener/base.py' 2022-12-14T18:59:50,361 adding 'pyscreener/exceptions.py' 2022-12-14T18:59:50,362 adding 'pyscreener/main.py' 2022-12-14T18:59:50,364 adding 'pyscreener/supply.py' 2022-12-14T18:59:50,365 adding 'pyscreener/warnings.py' 2022-12-14T18:59:50,367 adding 'pyscreener/dft/__init__.py' 2022-12-14T18:59:50,368 adding 'pyscreener/dft/dft.py' 2022-12-14T18:59:50,370 adding 'pyscreener/dft/preparation.py' 2022-12-14T18:59:50,372 adding 'pyscreener/docking/__init__.py' 2022-12-14T18:59:50,373 adding 'pyscreener/docking/calculation.py' 2022-12-14T18:59:50,374 adding 'pyscreener/docking/metadata.py' 2022-12-14T18:59:50,375 adding 'pyscreener/docking/result.py' 2022-12-14T18:59:50,377 adding 'pyscreener/docking/runner.py' 2022-12-14T18:59:50,379 adding 'pyscreener/docking/screen.py' 2022-12-14T18:59:50,380 adding 'pyscreener/docking/sim.py' 2022-12-14T18:59:50,382 adding 'pyscreener/docking/utils.py' 2022-12-14T18:59:50,384 adding 'pyscreener/docking/dock/__init__.py' 2022-12-14T18:59:50,385 adding 'pyscreener/docking/dock/exceptions.py' 2022-12-14T18:59:50,386 adding 'pyscreener/docking/dock/metadata.py' 2022-12-14T18:59:50,388 adding 'pyscreener/docking/dock/runner.py' 2022-12-14T18:59:50,390 adding 'pyscreener/docking/dock/utils.py' 2022-12-14T18:59:50,392 adding 'pyscreener/docking/dock/scripts/__init__.py' 2022-12-14T18:59:50,394 adding 'pyscreener/docking/dock/scripts/prep_rec.py2' 2022-12-14T18:59:50,395 adding 'pyscreener/docking/dock/scripts/write_dms.py2' 2022-12-14T18:59:50,397 adding 'pyscreener/docking/vina/__init__.py' 2022-12-14T18:59:50,398 adding 'pyscreener/docking/vina/metadata.py' 2022-12-14T18:59:50,400 adding 'pyscreener/docking/vina/runner.py' 2022-12-14T18:59:50,402 adding 'pyscreener/docking/vina/utils.py' 2022-12-14T18:59:50,403 adding 'pyscreener/md/__init__.py' 2022-12-14T18:59:50,405 adding 'pyscreener/md/md.py' 2022-12-14T18:59:50,406 adding 'pyscreener/md/preparation.py' 2022-12-14T18:59:50,408 adding 'pyscreener/postprocessing/__init__.py' 2022-12-14T18:59:50,409 adding 'pyscreener/postprocessing/cluster.py' 2022-12-14T18:59:50,411 adding 'pyscreener/postprocessing/fingerprints.py' 2022-12-14T18:59:50,412 adding 'pyscreener/postprocessing/hist.py' 2022-12-14T18:59:50,414 adding 'pyscreener/preprocessing/filter.py' 2022-12-14T18:59:50,416 adding 'pyscreener/utils/__init__.py' 2022-12-14T18:59:50,418 adding 'pyscreener/utils/autobox.py' 2022-12-14T18:59:50,419 adding 'pyscreener/utils/pdbfix.py' 2022-12-14T18:59:50,421 adding 'pyscreener/utils/utils.py' 2022-12-14T18:59:50,423 adding 'pyscreener-1.2.3.dist-info/LICENSE' 2022-12-14T18:59:50,427 adding 'pyscreener-1.2.3.dist-info/METADATA' 2022-12-14T18:59:50,428 adding 'pyscreener-1.2.3.dist-info/WHEEL' 2022-12-14T18:59:50,429 adding 'pyscreener-1.2.3.dist-info/entry_points.txt' 2022-12-14T18:59:50,430 adding 'pyscreener-1.2.3.dist-info/top_level.txt' 2022-12-14T18:59:50,431 adding 'pyscreener-1.2.3.dist-info/RECORD' 2022-12-14T18:59:50,434 removing build/bdist.linux-armv7l/wheel 2022-12-14T18:59:50,602 Building wheel for pyscreener (pyproject.toml): finished with status 'done' 2022-12-14T18:59:50,610 Created wheel for pyscreener: filename=pyscreener-1.2.3-py3-none-any.whl size=52265 sha256=9fe6a014d7593abe4a935bc84039ffdfb20d9b02fdd2699654b58c64a4718539 2022-12-14T18:59:50,611 Stored in directory: /tmp/pip-ephem-wheel-cache-sr5e3r4g/wheels/c8/9f/e0/68c84d3577afb8e42abdcea865a46ee2bc2920377c9b233c7e 2022-12-14T18:59:50,626 Successfully built pyscreener 2022-12-14T18:59:50,631 Removed build tracker: '/tmp/pip-build-tracker-eltft23r'