2022-12-15T06:49:35,579 Created temporary directory: /tmp/pip-ephem-wheel-cache-5hjdg12n 2022-12-15T06:49:35,584 Created temporary directory: /tmp/pip-build-tracker-mdeogkr0 2022-12-15T06:49:35,585 Initialized build tracking at /tmp/pip-build-tracker-mdeogkr0 2022-12-15T06:49:35,585 Created build tracker: /tmp/pip-build-tracker-mdeogkr0 2022-12-15T06:49:35,585 Entered build tracker: /tmp/pip-build-tracker-mdeogkr0 2022-12-15T06:49:35,586 Created temporary directory: /tmp/pip-wheel-b0ab8ltz 2022-12-15T06:49:35,594 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T06:49:35,600 Created temporary directory: /tmp/pip-ephem-wheel-cache-9t07h8ws 2022-12-15T06:49:35,658 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T06:49:35,665 2 location(s) to search for versions of aaftf: 2022-12-15T06:49:35,665 * https://pypi.org/simple/aaftf/ 2022-12-15T06:49:35,665 * https://www.piwheels.org/simple/aaftf/ 2022-12-15T06:49:35,666 Fetching project page and analyzing links: https://pypi.org/simple/aaftf/ 2022-12-15T06:49:35,667 Getting page https://pypi.org/simple/aaftf/ 2022-12-15T06:49:35,670 Found index url https://pypi.org/simple 2022-12-15T06:49:35,777 Fetched page https://pypi.org/simple/aaftf/ as application/vnd.pypi.simple.v1+json 2022-12-15T06:49:35,781 Found link https://files.pythonhosted.org/packages/a1/88/6051f1d9f7bec395e64a577014851d6df2606e270629ca99346f47e8e815/AAFTF-0.3.2.tar.gz (from https://pypi.org/simple/aaftf/), version: 0.3.2 2022-12-15T06:49:35,782 Found link https://files.pythonhosted.org/packages/9e/0b/fa5f7e3546030f059666a3b79e7f93698cbe14020a74c97bdc7f0cb5780a/AAFTF-0.3.3.tar.gz (from https://pypi.org/simple/aaftf/), version: 0.3.3 2022-12-15T06:49:35,783 Found link https://files.pythonhosted.org/packages/1b/35/6a3bb933c75e05cabbbbafc9430615cad5ccf9481aae13dfafa7a32ad55f/AAFTF-0.3.4.tar.gz (from https://pypi.org/simple/aaftf/), version: 0.3.4 2022-12-15T06:49:35,784 Found link https://files.pythonhosted.org/packages/ae/89/f548dca1d685a7d1036ed10229222d4455017955abe8803f2d32238db44c/AAFTF-0.4.0.tar.gz (from https://pypi.org/simple/aaftf/), version: 0.4.0 2022-12-15T06:49:35,784 Found link https://files.pythonhosted.org/packages/fb/81/72404da24b481f3d6b4c9c8d95ed6a1b07bf42bc57d4d72239c6fb1b70a2/AAFTF-0.4.1.tar.gz (from https://pypi.org/simple/aaftf/), version: 0.4.1 2022-12-15T06:49:35,785 Fetching project page and analyzing links: https://www.piwheels.org/simple/aaftf/ 2022-12-15T06:49:35,786 Getting page https://www.piwheels.org/simple/aaftf/ 2022-12-15T06:49:35,788 Found index url https://www.piwheels.org/simple 2022-12-15T06:49:36,008 Fetched page https://www.piwheels.org/simple/aaftf/ as text/html 2022-12-15T06:49:36,011 Skipping link: No binaries permitted for aaftf: https://www.piwheels.org/simple/aaftf/AAFTF-0.3.4-py3-none-any.whl#sha256=0f4d1f5f060575043bf719ea6f07b0f0b9854ad40c8189d7ef87496c0044fecc (from https://www.piwheels.org/simple/aaftf/) 2022-12-15T06:49:36,012 Skipping link: No binaries permitted for aaftf: https://www.piwheels.org/simple/aaftf/AAFTF-0.3.3-py3-none-any.whl#sha256=6eb1782c11bc8979277d26467e2c09f7aea4c00976ec9e6b65c3a56f081ef0db (from https://www.piwheels.org/simple/aaftf/) 2022-12-15T06:49:36,013 Skipping link: not a file: https://www.piwheels.org/simple/aaftf/ 2022-12-15T06:49:36,013 Skipping link: not a file: https://pypi.org/simple/aaftf/ 2022-12-15T06:49:36,047 Given no hashes to check 1 links for project 'aaftf': discarding no candidates 2022-12-15T06:49:36,080 Collecting aaftf==0.4.1 2022-12-15T06:49:36,085 Created temporary directory: /tmp/pip-unpack-mpecw0b5 2022-12-15T06:49:36,310 Downloading AAFTF-0.4.1.tar.gz (49 kB) 2022-12-15T06:49:36,519 Added aaftf==0.4.1 from https://files.pythonhosted.org/packages/fb/81/72404da24b481f3d6b4c9c8d95ed6a1b07bf42bc57d4d72239c6fb1b70a2/AAFTF-0.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-mdeogkr0' 2022-12-15T06:49:36,522 Running setup.py (path:/tmp/pip-wheel-b0ab8ltz/aaftf_073433c613a945c78101945dd1871dfa/setup.py) egg_info for package aaftf 2022-12-15T06:49:36,523 Created temporary directory: /tmp/pip-pip-egg-info-z3w3ifv3 2022-12-15T06:49:36,523 Preparing metadata (setup.py): started 2022-12-15T06:49:36,526 Running command python setup.py egg_info 2022-12-15T06:49:38,997 running egg_info 2022-12-15T06:49:39,003 creating /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info 2022-12-15T06:49:39,064 writing /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/PKG-INFO 2022-12-15T06:49:39,069 writing dependency_links to /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/dependency_links.txt 2022-12-15T06:49:39,072 writing entry points to /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/entry_points.txt 2022-12-15T06:49:39,075 writing requirements to /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/requires.txt 2022-12-15T06:49:39,077 writing top-level names to /tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/top_level.txt 2022-12-15T06:49:39,079 writing manifest file '/tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/SOURCES.txt' 2022-12-15T06:49:39,276 reading manifest file '/tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/SOURCES.txt' 2022-12-15T06:49:39,279 reading manifest template 'MANIFEST.in' 2022-12-15T06:49:39,281 warning: no files found matching 'version.py' 2022-12-15T06:49:39,282 adding license file 'LICENSE' 2022-12-15T06:49:39,288 writing manifest file '/tmp/pip-pip-egg-info-z3w3ifv3/AAFTF.egg-info/SOURCES.txt' 2022-12-15T06:49:39,491 Preparing metadata (setup.py): finished with status 'done' 2022-12-15T06:49:39,503 Source in /tmp/pip-wheel-b0ab8ltz/aaftf_073433c613a945c78101945dd1871dfa has version 0.4.1, which satisfies requirement aaftf==0.4.1 from https://files.pythonhosted.org/packages/fb/81/72404da24b481f3d6b4c9c8d95ed6a1b07bf42bc57d4d72239c6fb1b70a2/AAFTF-0.4.1.tar.gz 2022-12-15T06:49:39,505 Removed aaftf==0.4.1 from https://files.pythonhosted.org/packages/fb/81/72404da24b481f3d6b4c9c8d95ed6a1b07bf42bc57d4d72239c6fb1b70a2/AAFTF-0.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-mdeogkr0' 2022-12-15T06:49:39,516 Created temporary directory: /tmp/pip-unpack-ei835bx2 2022-12-15T06:49:39,517 Building wheels for collected packages: aaftf 2022-12-15T06:49:39,526 Created temporary directory: /tmp/pip-wheel-9v09z3gt 2022-12-15T06:49:39,527 Building wheel for aaftf (setup.py): started 2022-12-15T06:49:39,529 Destination directory: /tmp/pip-wheel-9v09z3gt 2022-12-15T06:49:39,529 Running command python setup.py bdist_wheel 2022-12-15T06:49:41,983 running bdist_wheel 2022-12-15T06:49:42,715 running build 2022-12-15T06:49:42,715 running build_py 2022-12-15T06:49:42,786 creating build 2022-12-15T06:49:42,786 creating build/lib 2022-12-15T06:49:42,787 creating build/lib/AAFTF 2022-12-15T06:49:42,789 copying AAFTF/__version__.py -> build/lib/AAFTF 2022-12-15T06:49:42,793 copying AAFTF/__init__.py -> build/lib/AAFTF 2022-12-15T06:49:42,796 copying AAFTF/assemble.py -> build/lib/AAFTF 2022-12-15T06:49:42,801 copying AAFTF/vecscreen.py -> build/lib/AAFTF 2022-12-15T06:49:42,806 copying AAFTF/pipeline.py -> build/lib/AAFTF 2022-12-15T06:49:42,810 copying AAFTF/rmdup.py -> build/lib/AAFTF 2022-12-15T06:49:42,814 copying AAFTF/sourpurge.py -> build/lib/AAFTF 2022-12-15T06:49:42,818 copying AAFTF/trim.py -> build/lib/AAFTF 2022-12-15T06:49:42,822 copying AAFTF/resources.py -> build/lib/AAFTF 2022-12-15T06:49:42,826 copying AAFTF/filter.py -> build/lib/AAFTF 2022-12-15T06:49:42,830 copying AAFTF/version_hardcode.py -> build/lib/AAFTF 2022-12-15T06:49:42,833 copying AAFTF/utility.py -> build/lib/AAFTF 2022-12-15T06:49:42,838 copying AAFTF/sort.py -> build/lib/AAFTF 2022-12-15T06:49:42,841 copying AAFTF/AAFTF_main.py -> build/lib/AAFTF 2022-12-15T06:49:42,847 copying AAFTF/assess.py -> build/lib/AAFTF 2022-12-15T06:49:42,851 copying AAFTF/pilon.py -> build/lib/AAFTF 2022-12-15T06:49:42,855 copying AAFTF/mito.py -> build/lib/AAFTF 2022-12-15T06:49:42,860 creating build/lib/scripts 2022-12-15T06:49:42,861 copying scripts/__init__.py -> build/lib/scripts 2022-12-15T06:49:42,864 running egg_info 2022-12-15T06:49:43,015 writing AAFTF.egg-info/PKG-INFO 2022-12-15T06:49:43,019 writing dependency_links to AAFTF.egg-info/dependency_links.txt 2022-12-15T06:49:43,022 writing entry points to AAFTF.egg-info/entry_points.txt 2022-12-15T06:49:43,024 writing requirements to AAFTF.egg-info/requires.txt 2022-12-15T06:49:43,027 writing top-level names to AAFTF.egg-info/top_level.txt 2022-12-15T06:49:43,098 reading manifest file 'AAFTF.egg-info/SOURCES.txt' 2022-12-15T06:49:43,103 reading manifest template 'MANIFEST.in' 2022-12-15T06:49:43,105 warning: no files found matching 'version.py' 2022-12-15T06:49:43,106 adding license file 'LICENSE' 2022-12-15T06:49:43,113 writing manifest file 'AAFTF.egg-info/SOURCES.txt' 2022-12-15T06:49:43,118 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'AAFTF.data' as data is deprecated, please list it in `packages`. 2022-12-15T06:49:43,119 !! 2022-12-15T06:49:43,120 ############################ 2022-12-15T06:49:43,120 # Package would be ignored # 2022-12-15T06:49:43,121 ############################ 2022-12-15T06:49:43,121 Python recognizes 'AAFTF.data' as an importable package, 2022-12-15T06:49:43,121 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T06:49:43,122 'AAFTF.data' has been automatically added to the distribution only 2022-12-15T06:49:43,122 because it may contain data files, but this behavior is likely to change 2022-12-15T06:49:43,122 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T06:49:43,123 Please make sure that 'AAFTF.data' is included as a package by using 2022-12-15T06:49:43,123 the `packages` configuration field or the proper discovery methods 2022-12-15T06:49:43,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T06:49:43,124 instead of `find_packages(...)`/`find:`). 2022-12-15T06:49:43,125 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T06:49:43,125 documentation page. 2022-12-15T06:49:43,126 !! 2022-12-15T06:49:43,127 check.warn(importable) 2022-12-15T06:49:43,128 creating build/lib/AAFTF/data 2022-12-15T06:49:43,128 copying AAFTF/data/mito-seed.fasta -> build/lib/AAFTF/data 2022-12-15T06:49:43,129 copying AAFTF/data/novoplasty-config.txt -> build/lib/AAFTF/data 2022-12-15T06:49:43,206 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-15T06:49:43,206 setuptools.SetuptoolsDeprecationWarning, 2022-12-15T06:49:43,271 installing to build/bdist.linux-armv7l/wheel 2022-12-15T06:49:43,272 running install 2022-12-15T06:49:43,332 running install_lib 2022-12-15T06:49:43,399 creating build/bdist.linux-armv7l 2022-12-15T06:49:43,399 creating build/bdist.linux-armv7l/wheel 2022-12-15T06:49:43,403 creating build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,405 copying build/lib/AAFTF/__version__.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,409 copying build/lib/AAFTF/__init__.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,413 copying build/lib/AAFTF/assemble.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,418 creating build/bdist.linux-armv7l/wheel/AAFTF/data 2022-12-15T06:49:43,419 copying build/lib/AAFTF/data/novoplasty-config.txt -> build/bdist.linux-armv7l/wheel/AAFTF/data 2022-12-15T06:49:43,423 copying build/lib/AAFTF/data/mito-seed.fasta -> build/bdist.linux-armv7l/wheel/AAFTF/data 2022-12-15T06:49:43,429 copying build/lib/AAFTF/vecscreen.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,433 copying build/lib/AAFTF/pipeline.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,438 copying build/lib/AAFTF/rmdup.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,442 copying build/lib/AAFTF/sourpurge.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,446 copying build/lib/AAFTF/trim.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,450 copying build/lib/AAFTF/resources.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,454 copying build/lib/AAFTF/filter.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,459 copying build/lib/AAFTF/version_hardcode.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,462 copying build/lib/AAFTF/utility.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,467 copying build/lib/AAFTF/sort.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,471 copying build/lib/AAFTF/AAFTF_main.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,477 copying build/lib/AAFTF/assess.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,482 copying build/lib/AAFTF/pilon.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,487 copying build/lib/AAFTF/mito.py -> build/bdist.linux-armv7l/wheel/AAFTF 2022-12-15T06:49:43,492 creating build/bdist.linux-armv7l/wheel/scripts 2022-12-15T06:49:43,494 copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts 2022-12-15T06:49:43,497 running install_egg_info 2022-12-15T06:49:43,572 Copying AAFTF.egg-info to build/bdist.linux-armv7l/wheel/AAFTF-0.4.1-py3.7.egg-info 2022-12-15T06:49:43,598 running install_scripts 2022-12-15T06:49:43,792 adding license file "LICENSE" (matched pattern "LICENSE") 2022-12-15T06:49:43,799 creating build/bdist.linux-armv7l/wheel/AAFTF-0.4.1.dist-info/WHEEL 2022-12-15T06:49:43,805 creating '/tmp/pip-wheel-9v09z3gt/AAFTF-0.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-15T06:49:43,816 adding 'AAFTF/AAFTF_main.py' 2022-12-15T06:49:43,820 adding 'AAFTF/__init__.py' 2022-12-15T06:49:43,823 adding 'AAFTF/__version__.py' 2022-12-15T06:49:43,827 adding 'AAFTF/assemble.py' 2022-12-15T06:49:43,831 adding 'AAFTF/assess.py' 2022-12-15T06:49:43,835 adding 'AAFTF/filter.py' 2022-12-15T06:49:43,839 adding 'AAFTF/mito.py' 2022-12-15T06:49:43,843 adding 'AAFTF/pilon.py' 2022-12-15T06:49:43,847 adding 'AAFTF/pipeline.py' 2022-12-15T06:49:43,851 adding 'AAFTF/resources.py' 2022-12-15T06:49:43,854 adding 'AAFTF/rmdup.py' 2022-12-15T06:49:43,857 adding 'AAFTF/sort.py' 2022-12-15T06:49:43,862 adding 'AAFTF/sourpurge.py' 2022-12-15T06:49:43,866 adding 'AAFTF/trim.py' 2022-12-15T06:49:43,872 adding 'AAFTF/utility.py' 2022-12-15T06:49:43,878 adding 'AAFTF/vecscreen.py' 2022-12-15T06:49:43,881 adding 'AAFTF/version_hardcode.py' 2022-12-15T06:49:43,925 adding 'AAFTF/data/mito-seed.fasta' 2022-12-15T06:49:43,928 adding 'AAFTF/data/novoplasty-config.txt' 2022-12-15T06:49:43,935 adding 'scripts/__init__.py' 2022-12-15T06:49:43,938 adding 'AAFTF-0.4.1.dist-info/LICENSE' 2022-12-15T06:49:43,941 adding 'AAFTF-0.4.1.dist-info/METADATA' 2022-12-15T06:49:43,943 adding 'AAFTF-0.4.1.dist-info/WHEEL' 2022-12-15T06:49:43,946 adding 'AAFTF-0.4.1.dist-info/entry_points.txt' 2022-12-15T06:49:43,948 adding 'AAFTF-0.4.1.dist-info/top_level.txt' 2022-12-15T06:49:43,952 adding 'AAFTF-0.4.1.dist-info/RECORD' 2022-12-15T06:49:43,958 removing build/bdist.linux-armv7l/wheel 2022-12-15T06:49:44,223 Building wheel for aaftf (setup.py): finished with status 'done' 2022-12-15T06:49:44,452 Created wheel for aaftf: filename=AAFTF-0.4.1-py3-none-any.whl size=51619 sha256=a309c3672eefd3f5a303ef3b8ce507b97d6b27cf52f284c1b1bf9426bf2e86b4 2022-12-15T06:49:44,454 Stored in directory: /tmp/pip-ephem-wheel-cache-9t07h8ws/wheels/46/56/3b/848aee1effccdddbeac87de067651dd58f94064163ba629ab8 2022-12-15T06:49:44,479 Successfully built aaftf 2022-12-15T06:49:44,489 Removed build tracker: '/tmp/pip-build-tracker-mdeogkr0'