2022-12-15T11:39:09,617 Created temporary directory: /tmp/pip-ephem-wheel-cache-9wmkbdi8
2022-12-15T11:39:09,622 Created temporary directory: /tmp/pip-build-tracker-igaj0af4
2022-12-15T11:39:09,623 Initialized build tracking at /tmp/pip-build-tracker-igaj0af4
2022-12-15T11:39:09,623 Created build tracker: /tmp/pip-build-tracker-igaj0af4
2022-12-15T11:39:09,624 Entered build tracker: /tmp/pip-build-tracker-igaj0af4
2022-12-15T11:39:09,625 Created temporary directory: /tmp/pip-wheel-4p4wyoim
2022-12-15T11:39:09,633 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-15T11:39:09,638 Created temporary directory: /tmp/pip-ephem-wheel-cache-94fdjlb5
2022-12-15T11:39:09,695 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-15T11:39:09,702 2 location(s) to search for versions of maginator:
2022-12-15T11:39:09,702 * https://pypi.org/simple/maginator/
2022-12-15T11:39:09,702 * https://www.piwheels.org/simple/maginator/
2022-12-15T11:39:09,703 Fetching project page and analyzing links: https://pypi.org/simple/maginator/
2022-12-15T11:39:09,704 Getting page https://pypi.org/simple/maginator/
2022-12-15T11:39:09,707 Found index url https://pypi.org/simple
2022-12-15T11:39:09,915 Fetched page https://pypi.org/simple/maginator/ as application/vnd.pypi.simple.v1+json
2022-12-15T11:39:09,918   Skipping link: unsupported archive format: .egg: https://files.pythonhosted.org/packages/28/10/ecccd562aaffc3f6d204d7204aec58c58d9a9f6af3ade5cc175db4537a5b/maginator-0.1.8-py3.7.egg (from https://pypi.org/simple/maginator/) (requires-python:>=3.5)
2022-12-15T11:39:09,919   Found link https://files.pythonhosted.org/packages/b2/0e/e9f8fab4868fdbeac8e0d4e20739b76094430d0359620da63f5fae1ebb9d/maginator-0.1.8.tar.gz (from https://pypi.org/simple/maginator/) (requires-python:>=3.5), version: 0.1.8
2022-12-15T11:39:09,920 Fetching project page and analyzing links: https://www.piwheels.org/simple/maginator/
2022-12-15T11:39:09,921 Getting page https://www.piwheels.org/simple/maginator/
2022-12-15T11:39:09,923 Found index url https://www.piwheels.org/simple
2022-12-15T11:39:10,141 Fetched page https://www.piwheels.org/simple/maginator/ as text/html
2022-12-15T11:39:10,143 Skipping link: not a file: https://www.piwheels.org/simple/maginator/
2022-12-15T11:39:10,143 Skipping link: not a file: https://pypi.org/simple/maginator/
2022-12-15T11:39:10,178 Given no hashes to check 1 links for project 'maginator': discarding no candidates
2022-12-15T11:39:10,209 Collecting maginator==0.1.8
2022-12-15T11:39:10,213   Created temporary directory: /tmp/pip-unpack-rhawffr6
2022-12-15T11:39:10,451   Downloading maginator-0.1.8.tar.gz (40 kB)
2022-12-15T11:39:10,677   Added maginator==0.1.8 from https://files.pythonhosted.org/packages/b2/0e/e9f8fab4868fdbeac8e0d4e20739b76094430d0359620da63f5fae1ebb9d/maginator-0.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-igaj0af4'
2022-12-15T11:39:10,680   Running setup.py (path:/tmp/pip-wheel-4p4wyoim/maginator_7fd6a253c6a14d60b78e7ca5aa641a16/setup.py) egg_info for package maginator
2022-12-15T11:39:10,681   Created temporary directory: /tmp/pip-pip-egg-info-fto995cj
2022-12-15T11:39:10,682   Preparing metadata (setup.py): started
2022-12-15T11:39:10,684   Running command python setup.py egg_info
2022-12-15T11:39:13,506   running egg_info
2022-12-15T11:39:13,510   creating /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info
2022-12-15T11:39:13,600   writing /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/PKG-INFO
2022-12-15T11:39:13,606   writing dependency_links to /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/dependency_links.txt
2022-12-15T11:39:13,609   writing entry points to /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/entry_points.txt
2022-12-15T11:39:13,612   writing requirements to /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/requires.txt
2022-12-15T11:39:13,613   writing top-level names to /tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/top_level.txt
2022-12-15T11:39:13,615   writing manifest file '/tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/SOURCES.txt'
2022-12-15T11:39:13,898   reading manifest file '/tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/SOURCES.txt'
2022-12-15T11:39:13,901   reading manifest template 'MANIFEST.in'
2022-12-15T11:39:13,939   writing manifest file '/tmp/pip-pip-egg-info-fto995cj/maginator.egg-info/SOURCES.txt'
2022-12-15T11:39:14,142   Preparing metadata (setup.py): finished with status 'done'
2022-12-15T11:39:14,156   Source in /tmp/pip-wheel-4p4wyoim/maginator_7fd6a253c6a14d60b78e7ca5aa641a16 has version 0.1.8, which satisfies requirement maginator==0.1.8 from https://files.pythonhosted.org/packages/b2/0e/e9f8fab4868fdbeac8e0d4e20739b76094430d0359620da63f5fae1ebb9d/maginator-0.1.8.tar.gz
2022-12-15T11:39:14,157   Removed maginator==0.1.8 from https://files.pythonhosted.org/packages/b2/0e/e9f8fab4868fdbeac8e0d4e20739b76094430d0359620da63f5fae1ebb9d/maginator-0.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-igaj0af4'
2022-12-15T11:39:14,173 Created temporary directory: /tmp/pip-unpack-hi9as6th
2022-12-15T11:39:14,174 Building wheels for collected packages: maginator
2022-12-15T11:39:14,183   Created temporary directory: /tmp/pip-wheel-_xexpvs4
2022-12-15T11:39:14,184   Building wheel for maginator (setup.py): started
2022-12-15T11:39:14,186   Destination directory: /tmp/pip-wheel-_xexpvs4
2022-12-15T11:39:14,186   Running command python setup.py bdist_wheel
2022-12-15T11:39:17,016   running bdist_wheel
2022-12-15T11:39:17,883   running build
2022-12-15T11:39:17,883   running build_py
2022-12-15T11:39:17,982   creating build
2022-12-15T11:39:17,982   creating build/lib
2022-12-15T11:39:17,983   creating build/lib/maginator
2022-12-15T11:39:17,986   copying maginator/messages.py -> build/lib/maginator
2022-12-15T11:39:17,989   copying maginator/__init__.py -> build/lib/maginator
2022-12-15T11:39:17,993   copying maginator/main.py -> build/lib/maginator
2022-12-15T11:39:17,997   copying maginator/controller.py -> build/lib/maginator
2022-12-15T11:39:18,002   copying maginator/workflow.py -> build/lib/maginator
2022-12-15T11:39:18,005   running egg_info
2022-12-15T11:39:18,215   writing maginator.egg-info/PKG-INFO
2022-12-15T11:39:18,219   writing dependency_links to maginator.egg-info/dependency_links.txt
2022-12-15T11:39:18,223   writing entry points to maginator.egg-info/entry_points.txt
2022-12-15T11:39:18,225   writing requirements to maginator.egg-info/requires.txt
2022-12-15T11:39:18,227   writing top-level names to maginator.egg-info/top_level.txt
2022-12-15T11:39:18,332   reading manifest file 'maginator.egg-info/SOURCES.txt'
2022-12-15T11:39:18,338   reading manifest template 'MANIFEST.in'
2022-12-15T11:39:18,377   writing manifest file 'maginator.egg-info/SOURCES.txt'
2022-12-15T11:39:18,381   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'maginator.workflow' as data is deprecated, please list it in `packages`.
2022-12-15T11:39:18,382       !!


2022-12-15T11:39:18,383       ############################
2022-12-15T11:39:18,383       # Package would be ignored #
2022-12-15T11:39:18,383       ############################
2022-12-15T11:39:18,384       Python recognizes 'maginator.workflow' as an importable package,
2022-12-15T11:39:18,384       but it is not listed in the `packages` configuration of setuptools.

2022-12-15T11:39:18,385       'maginator.workflow' has been automatically added to the distribution only
2022-12-15T11:39:18,385       because it may contain data files, but this behavior is likely to change
2022-12-15T11:39:18,385       in future versions of setuptools (and therefore is considered deprecated).

2022-12-15T11:39:18,386       Please make sure that 'maginator.workflow' is included as a package by using
2022-12-15T11:39:18,386       the `packages` configuration field or the proper discovery methods
2022-12-15T11:39:18,386       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-15T11:39:18,387       instead of `find_packages(...)`/`find:`).

2022-12-15T11:39:18,387       You can read more about "package discovery" and "data files" on setuptools
2022-12-15T11:39:18,388       documentation page.


2022-12-15T11:39:18,389   !!

2022-12-15T11:39:18,389     check.warn(importable)
2022-12-15T11:39:18,390   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'maginator.workflow.envs' as data is deprecated, please list it in `packages`.
2022-12-15T11:39:18,390       !!


2022-12-15T11:39:18,391       ############################
2022-12-15T11:39:18,391       # Package would be ignored #
2022-12-15T11:39:18,391       ############################
2022-12-15T11:39:18,392       Python recognizes 'maginator.workflow.envs' as an importable package,
2022-12-15T11:39:18,392       but it is not listed in the `packages` configuration of setuptools.

2022-12-15T11:39:18,392       'maginator.workflow.envs' has been automatically added to the distribution only
2022-12-15T11:39:18,393       because it may contain data files, but this behavior is likely to change
2022-12-15T11:39:18,393       in future versions of setuptools (and therefore is considered deprecated).

2022-12-15T11:39:18,394       Please make sure that 'maginator.workflow.envs' is included as a package by using
2022-12-15T11:39:18,394       the `packages` configuration field or the proper discovery methods
2022-12-15T11:39:18,394       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-15T11:39:18,394       instead of `find_packages(...)`/`find:`).

2022-12-15T11:39:18,395       You can read more about "package discovery" and "data files" on setuptools
2022-12-15T11:39:18,395       documentation page.


2022-12-15T11:39:18,396   !!

2022-12-15T11:39:18,397     check.warn(importable)
2022-12-15T11:39:18,397   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'maginator.workflow.scripts' as data is deprecated, please list it in `packages`.
2022-12-15T11:39:18,397       !!


2022-12-15T11:39:18,398       ############################
2022-12-15T11:39:18,399       # Package would be ignored #
2022-12-15T11:39:18,399       ############################
2022-12-15T11:39:18,399       Python recognizes 'maginator.workflow.scripts' as an importable package,
2022-12-15T11:39:18,400       but it is not listed in the `packages` configuration of setuptools.

2022-12-15T11:39:18,400       'maginator.workflow.scripts' has been automatically added to the distribution only
2022-12-15T11:39:18,401       because it may contain data files, but this behavior is likely to change
2022-12-15T11:39:18,401       in future versions of setuptools (and therefore is considered deprecated).

2022-12-15T11:39:18,402       Please make sure that 'maginator.workflow.scripts' is included as a package by using
2022-12-15T11:39:18,402       the `packages` configuration field or the proper discovery methods
2022-12-15T11:39:18,402       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-15T11:39:18,403       instead of `find_packages(...)`/`find:`).

2022-12-15T11:39:18,403       You can read more about "package discovery" and "data files" on setuptools
2022-12-15T11:39:18,404       documentation page.


2022-12-15T11:39:18,405   !!

2022-12-15T11:39:18,406     check.warn(importable)
2022-12-15T11:39:18,406   creating build/lib/maginator/workflow
2022-12-15T11:39:18,406   copying maginator/workflow/alignment.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,407   copying maginator/workflow/filter.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,407   copying maginator/workflow/filter_geneclusters.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,412   copying maginator/workflow/gene_count_mat.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,415   copying maginator/workflow/gene_tax.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,419   copying maginator/workflow/gtdbtk.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,423   copying maginator/workflow/outgroup.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,427   copying maginator/workflow/parse_gtdbtk.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,430   copying maginator/workflow/phylo.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,434   copying maginator/workflow/pileup.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,438   copying maginator/workflow/pileup_parse.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,442   copying maginator/workflow/prescreening_genes.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,445   copying maginator/workflow/signature_genes.Snakefile -> build/lib/maginator/workflow
2022-12-15T11:39:18,449   creating build/lib/maginator/workflow/envs
2022-12-15T11:39:18,450   copying maginator/workflow/envs/filter_geneclusters.yaml -> build/lib/maginator/workflow/envs
2022-12-15T11:39:18,454   copying maginator/workflow/envs/filter_gtdbtk.yaml -> build/lib/maginator/workflow/envs
2022-12-15T11:39:18,458   copying maginator/workflow/envs/phylo.yaml -> build/lib/maginator/workflow/envs
2022-12-15T11:39:18,461   copying maginator/workflow/envs/signature_genes.yaml -> build/lib/maginator/workflow/envs
2022-12-15T11:39:18,465   creating build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,466   copying maginator/workflow/scripts/Functions_v4.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,471   copying maginator/workflow/scripts/MGS_counts.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,474   copying maginator/workflow/scripts/SG_refinement.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,479   copying maginator/workflow/scripts/abundance_profiles.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,483   copying maginator/workflow/scripts/concat.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,487   copying maginator/workflow/scripts/filter.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,490   copying maginator/workflow/scripts/gene_cluster2tax.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,494   copying maginator/workflow/scripts/marker_genes.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,499   copying maginator/workflow/scripts/matrix2SG_formatconversion.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,502   copying maginator/workflow/scripts/mpileup.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,507   copying maginator/workflow/scripts/parse_gtdbtk.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,511   copying maginator/workflow/scripts/prescreening_genes.R -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,515   copying maginator/workflow/scripts/sort_gene_mat.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,518   copying maginator/workflow/scripts/species_collections.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,522   copying maginator/workflow/scripts/synteny.py -> build/lib/maginator/workflow/scripts
2022-12-15T11:39:18,627   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-12-15T11:39:18,627     setuptools.SetuptoolsDeprecationWarning,
2022-12-15T11:39:18,724   installing to build/bdist.linux-armv7l/wheel
2022-12-15T11:39:18,725   running install
2022-12-15T11:39:18,787   running install_lib
2022-12-15T11:39:18,881   creating build/bdist.linux-armv7l
2022-12-15T11:39:18,882   creating build/bdist.linux-armv7l/wheel
2022-12-15T11:39:18,885   creating build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:18,887   copying build/lib/maginator/messages.py -> build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:18,892   creating build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,893   copying build/lib/maginator/workflow/pileup.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,899   copying build/lib/maginator/workflow/prescreening_genes.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,908   copying build/lib/maginator/workflow/signature_genes.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,909   copying build/lib/maginator/workflow/gene_tax.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,913   copying build/lib/maginator/workflow/pileup_parse.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,917   copying build/lib/maginator/workflow/outgroup.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,921   copying build/lib/maginator/workflow/filter_geneclusters.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,924   copying build/lib/maginator/workflow/parse_gtdbtk.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,928   copying build/lib/maginator/workflow/alignment.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,933   creating build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,934   copying build/lib/maginator/workflow/scripts/parse_gtdbtk.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,939   copying build/lib/maginator/workflow/scripts/marker_genes.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,943   copying build/lib/maginator/workflow/scripts/sort_gene_mat.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,946   copying build/lib/maginator/workflow/scripts/gene_cluster2tax.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,950   copying build/lib/maginator/workflow/scripts/MGS_counts.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,953   copying build/lib/maginator/workflow/scripts/mpileup.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,958   copying build/lib/maginator/workflow/scripts/synteny.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,961   copying build/lib/maginator/workflow/scripts/abundance_profiles.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,965   copying build/lib/maginator/workflow/scripts/species_collections.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,969   copying build/lib/maginator/workflow/scripts/concat.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,972   copying build/lib/maginator/workflow/scripts/filter.py -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,975   copying build/lib/maginator/workflow/scripts/Functions_v4.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,979   copying build/lib/maginator/workflow/scripts/prescreening_genes.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,983   copying build/lib/maginator/workflow/scripts/SG_refinement.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,987   copying build/lib/maginator/workflow/scripts/matrix2SG_formatconversion.R -> build/bdist.linux-armv7l/wheel/maginator/workflow/scripts
2022-12-15T11:39:18,990   copying build/lib/maginator/workflow/gtdbtk.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,993   copying build/lib/maginator/workflow/phylo.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:18,996   copying build/lib/maginator/workflow/filter.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:19,000   copying build/lib/maginator/workflow/gene_count_mat.Snakefile -> build/bdist.linux-armv7l/wheel/maginator/workflow
2022-12-15T11:39:19,004   creating build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2022-12-15T11:39:19,005   copying build/lib/maginator/workflow/envs/signature_genes.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2022-12-15T11:39:19,009   copying build/lib/maginator/workflow/envs/phylo.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2022-12-15T11:39:19,012   copying build/lib/maginator/workflow/envs/filter_gtdbtk.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2022-12-15T11:39:19,015   copying build/lib/maginator/workflow/envs/filter_geneclusters.yaml -> build/bdist.linux-armv7l/wheel/maginator/workflow/envs
2022-12-15T11:39:19,018   copying build/lib/maginator/__init__.py -> build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:19,021   copying build/lib/maginator/main.py -> build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:19,025   copying build/lib/maginator/controller.py -> build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:19,032   copying build/lib/maginator/workflow.py -> build/bdist.linux-armv7l/wheel/maginator
2022-12-15T11:39:19,035   running install_egg_info
2022-12-15T11:39:19,188   Copying maginator.egg-info to build/bdist.linux-armv7l/wheel/maginator-0.1.8-py3.7.egg-info
2022-12-15T11:39:19,225   running install_scripts
2022-12-15T11:39:19,374   creating build/bdist.linux-armv7l/wheel/maginator-0.1.8.dist-info/WHEEL
2022-12-15T11:39:19,378   creating '/tmp/pip-wheel-_xexpvs4/maginator-0.1.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-15T11:39:19,383   adding 'maginator/__init__.py'
2022-12-15T11:39:19,386   adding 'maginator/controller.py'
2022-12-15T11:39:19,390   adding 'maginator/main.py'
2022-12-15T11:39:19,392   adding 'maginator/messages.py'
2022-12-15T11:39:19,395   adding 'maginator/workflow.py'
2022-12-15T11:39:19,399   adding 'maginator/workflow/alignment.Snakefile'
2022-12-15T11:39:19,401   adding 'maginator/workflow/filter.Snakefile'
2022-12-15T11:39:19,403   adding 'maginator/workflow/filter_geneclusters.Snakefile'
2022-12-15T11:39:19,406   adding 'maginator/workflow/gene_count_mat.Snakefile'
2022-12-15T11:39:19,408   adding 'maginator/workflow/gene_tax.Snakefile'
2022-12-15T11:39:19,411   adding 'maginator/workflow/gtdbtk.Snakefile'
2022-12-15T11:39:19,413   adding 'maginator/workflow/outgroup.Snakefile'
2022-12-15T11:39:19,416   adding 'maginator/workflow/parse_gtdbtk.Snakefile'
2022-12-15T11:39:19,418   adding 'maginator/workflow/phylo.Snakefile'
2022-12-15T11:39:19,420   adding 'maginator/workflow/pileup.Snakefile'
2022-12-15T11:39:19,422   adding 'maginator/workflow/pileup_parse.Snakefile'
2022-12-15T11:39:19,425   adding 'maginator/workflow/prescreening_genes.Snakefile'
2022-12-15T11:39:19,427   adding 'maginator/workflow/signature_genes.Snakefile'
2022-12-15T11:39:19,431   adding 'maginator/workflow/envs/filter_geneclusters.yaml'
2022-12-15T11:39:19,433   adding 'maginator/workflow/envs/filter_gtdbtk.yaml'
2022-12-15T11:39:19,435   adding 'maginator/workflow/envs/phylo.yaml'
2022-12-15T11:39:19,437   adding 'maginator/workflow/envs/signature_genes.yaml'
2022-12-15T11:39:19,442   adding 'maginator/workflow/scripts/Functions_v4.R'
2022-12-15T11:39:19,444   adding 'maginator/workflow/scripts/MGS_counts.R'
2022-12-15T11:39:19,448   adding 'maginator/workflow/scripts/SG_refinement.R'
2022-12-15T11:39:19,452   adding 'maginator/workflow/scripts/abundance_profiles.R'
2022-12-15T11:39:19,454   adding 'maginator/workflow/scripts/concat.py'
2022-12-15T11:39:19,456   adding 'maginator/workflow/scripts/filter.py'
2022-12-15T11:39:19,459   adding 'maginator/workflow/scripts/gene_cluster2tax.py'
2022-12-15T11:39:19,463   adding 'maginator/workflow/scripts/marker_genes.py'
2022-12-15T11:39:19,466   adding 'maginator/workflow/scripts/matrix2SG_formatconversion.R'
2022-12-15T11:39:19,472   adding 'maginator/workflow/scripts/mpileup.py'
2022-12-15T11:39:19,475   adding 'maginator/workflow/scripts/parse_gtdbtk.py'
2022-12-15T11:39:19,477   adding 'maginator/workflow/scripts/prescreening_genes.R'
2022-12-15T11:39:19,480   adding 'maginator/workflow/scripts/sort_gene_mat.py'
2022-12-15T11:39:19,482   adding 'maginator/workflow/scripts/species_collections.py'
2022-12-15T11:39:19,485   adding 'maginator/workflow/scripts/synteny.py'
2022-12-15T11:39:19,493   adding 'maginator-0.1.8.dist-info/METADATA'
2022-12-15T11:39:19,495   adding 'maginator-0.1.8.dist-info/WHEEL'
2022-12-15T11:39:19,497   adding 'maginator-0.1.8.dist-info/entry_points.txt'
2022-12-15T11:39:19,498   adding 'maginator-0.1.8.dist-info/top_level.txt'
2022-12-15T11:39:19,501   adding 'maginator-0.1.8.dist-info/RECORD'
2022-12-15T11:39:19,505   removing build/bdist.linux-armv7l/wheel
2022-12-15T11:39:19,773   Building wheel for maginator (setup.py): finished with status 'done'
2022-12-15T11:39:19,782   Created wheel for maginator: filename=maginator-0.1.8-py3-none-any.whl size=52534 sha256=cb0efbdc1f46362c03b97cd18b7dd860d2dcc0f4ad09fc15f7d688be7194ff51
2022-12-15T11:39:19,784   Stored in directory: /tmp/pip-ephem-wheel-cache-94fdjlb5/wheels/f1/af/eb/0b5976b843ef6bc8752de70c982c59c1da00b172a7256707ff
2022-12-15T11:39:19,813 Successfully built maginator
2022-12-15T11:39:19,822 Removed build tracker: '/tmp/pip-build-tracker-igaj0af4'