2022-12-15T13:05:45,984 Created temporary directory: /tmp/pip-ephem-wheel-cache-l4t39c2g 2022-12-15T13:05:45,988 Created temporary directory: /tmp/pip-build-tracker-p5xfg_dd 2022-12-15T13:05:45,989 Initialized build tracking at /tmp/pip-build-tracker-p5xfg_dd 2022-12-15T13:05:45,989 Created build tracker: /tmp/pip-build-tracker-p5xfg_dd 2022-12-15T13:05:45,990 Entered build tracker: /tmp/pip-build-tracker-p5xfg_dd 2022-12-15T13:05:45,991 Created temporary directory: /tmp/pip-wheel-nwau3nk2 2022-12-15T13:05:45,999 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:05:46,004 Created temporary directory: /tmp/pip-ephem-wheel-cache-a8mod1jv 2022-12-15T13:05:46,061 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:05:46,069 2 location(s) to search for versions of pyhmmer: 2022-12-15T13:05:46,069 * https://pypi.org/simple/pyhmmer/ 2022-12-15T13:05:46,069 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:05:46,070 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-15T13:05:46,071 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-15T13:05:46,074 Found index url https://pypi.org/simple 2022-12-15T13:05:46,286 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-15T13:05:46,556 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:05:46,574 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:05:46,575 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:05:46,575 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-12-15T13:05:46,701 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,702 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,702 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/36/11/9211817ba7eb6aa848578017977e3ea4d42a5f2ba76a5a2c0c71d5984d6a/pyhmmer-0.4.5-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,710 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/a6/ee5ca7c4a3dcf82cf0f0dd5418c9fddad82149867352332d1feed8528cec/pyhmmer-0.4.5-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,711 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8e/ab/aaf80ebbba238a42a3f37e794ee56fad608ef5c5880dc5701d044d5720fb/pyhmmer-0.4.5-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,711 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/db/a3/c5f8dd1e931959d9c38df19fc937c6cf8568174e30ea2c2a86849cbd4b01/pyhmmer-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,713 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1e/36/0407821105d77948e7d703ee4aeacd2cead5cf317179db06508f7cdf7ce3/pyhmmer-0.4.5-pp36-pypy36_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,714 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/11/86/9beee426a65a90eca53de4f3b0116b562bcbcf6eadf403ec83ae1b312a13/pyhmmer-0.4.5-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,714 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3b/2d/e2a6dddd83bb0e389b0fc62449badff092ac664046c82ed718b5102b08f4/pyhmmer-0.4.5-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,715 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/9e/c179587a659325aa519390efba2fe7775178a111888fe32ba0978fd91205/pyhmmer-0.4.5-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,716 Found link https://files.pythonhosted.org/packages/c3/4c/926f71ac0913fbe2426f5f3ac8071edb4e700591b690c4acbaa7b559fb38/pyhmmer-0.4.5.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.5 2022-12-15T13:05:46,717 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/af/85534ee68bcdcb07d92d7630536659edaf435f0e7f8784189c53af637228/pyhmmer-0.4.6-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,718 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/03/d3/691d493cfc4d37f8f099ec52179d86fffaed4c9e3a6b9d76f6a3b5cf0e27/pyhmmer-0.4.6-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,718 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/f0/343198b3cebda51800efd71bc6001f5754a69c364da0f5571a5c4e91965d/pyhmmer-0.4.6-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,719 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ed/2e/efbfaaabf781ffd21b425c7cbe4dca8215c22388213aeec10b953c320cc3/pyhmmer-0.4.6-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,719 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6e/bc/1a349bbc9da921811a3c5f385dcb25819223672145a033539eb8acfa762e/pyhmmer-0.4.6-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,720 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/b6/432a099063555660c698ddf22c27a9f0e253ea7bf0b357dbcf9deb53f552/pyhmmer-0.4.6-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,720 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/44/cc860850904897b27fcb884a05986159a1ea08e238150aedba27f5c2a8ab/pyhmmer-0.4.6-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,722 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ce/14/ced57dff0f434c8fe2d84ed1f74b33d0dcc8b8dfd3b3a9ae9aa59f3d601f/pyhmmer-0.4.6-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,723 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/80/ef4da6ee20a7937f2a3e3c58bf45519a91890feda2461bc18f353ce70fee/pyhmmer-0.4.6-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,724 Found link https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-15T13:05:46,725 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,725 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,726 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d9/04/036c8ea00e8388dba6b116f4914df1065d7856f786d5c6458a1bd1ec6576/pyhmmer-0.4.7-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,732 Found link https://files.pythonhosted.org/packages/f1/eb/1328eb9c4ca58a684b9b210a51636a5294e6f6019675b0181c8a9c567ea3/pyhmmer-0.4.7.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.7 2022-12-15T13:05:46,733 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/60/97c5cfc22bf1d26475087e45455641599ca1e2910e670d9c72604508aee2/pyhmmer-0.4.8-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,733 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e1/97/4247b2ab3b52d8ab9d4fda6619c93d428c4e364ebea041e93b7236ade4a6/pyhmmer-0.4.9-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,741 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/7e/b349dc728eb72f78b0ac0b1cc9a7530000740584fcebadda7b93d0f13a0d/pyhmmer-0.4.9-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,741 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/50/0d/6a818b85e852443ac1fa4ede30e18d5d4a4b3c04616f84a48f5cb5d2f664/pyhmmer-0.4.9-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,742 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9a/07/442980e0fc7b4d336157fd80d843b3ad0b71709087b0daf910f2beee93cd/pyhmmer-0.4.9-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,742 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1a/41/f5b4ffcedcf3116573ff5740de4877723f0d69b7527ece4a794069de2235/pyhmmer-0.4.9-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,743 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/78/a6/d21ba62d70e38f7b3829c69be9179cea416599a8ee952c8f4ac5503bfd04/pyhmmer-0.4.9-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,744 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,746 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,746 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,747 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-15T13:05:46,748 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,749 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,749 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/ac/2db59c94139155e1241fabf650a8f30b238a68d13ca40014a75aece65b74/pyhmmer-0.4.10-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,750 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/06/ad/aaeafd77e0037312873a136a3c2165a5eab10ae37f56cb60b8c6de7442b4/pyhmmer-0.4.10-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,750 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/05/87/24601e2b81fedba09b3a003fd1e4fe78c8cd252767663acd9dbc63d1784d/pyhmmer-0.4.10-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,751 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,751 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,752 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,752 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,753 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,753 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,755 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-15T13:05:46,756 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,756 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,757 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/62/30/178be3d6c5dffe69cf886beff8302927e15d5ae2b92e9cef7f2f3fd0f43b/pyhmmer-0.4.11-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,759 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/9b/dc1fc0f379310382669aad49b6281cf3703f46662fc8d968b0b9ca0d7e8c/pyhmmer-0.4.11-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,759 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5c/54/4cba0bf00660fb32bc4e76006a76b20eaa4f694f49f37994995c6b0a4e1e/pyhmmer-0.4.11-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,760 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d1/ab/7448d935505b12a4a865f273b51c5e6a63ebacc6d3e98acb23b2133c1c8c/pyhmmer-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,769 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,769 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,770 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d4/b4/860e63999b6827d880f4985cae22adc88e92ab2e2b06e954abb60be2d411/pyhmmer-0.5.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.5.0 2022-12-15T13:05:46,773 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/81/e44ca051aa0c14b3d371da0e11c53b8c97915c587a4d2d8958b761bca739/pyhmmer-0.6.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,774 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/24/ff258c00e8a3d8f9d0f3a34f32f3405bee99ef0339a6fc4d529b6970cc49/pyhmmer-0.6.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,774 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e1/24/e5cba7b51dc391c8bc45dd7f98e61804088f8cc35346b362dedc94fae471/pyhmmer-0.6.0-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,778 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a0/ad/68a14e424200099462bd97c58fefe3b428a6522ae11b2e2b195bbbd6d15a/pyhmmer-0.6.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,778 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b5/2d/cd5b9729a37b0cdbe932461c79f74c75d17ac665f080f95633a8c275852d/pyhmmer-0.6.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,779 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/25/4a/2db5464d2bb8e41bb346060fd9c3ceae2043c60af6621f04c8e49dbecae9/pyhmmer-0.6.2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,795 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/60/a0/4d7a8f68dc85cd4cf70a39afc592ab67a2e703149887dc78f4d2031a3d1c/pyhmmer-0.6.2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,796 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/b8/a5edf3701cb051f9b8f397cc0ad5312bad4eb6eb761c99ec294b21c922f7/pyhmmer-0.6.2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,796 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,797 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,797 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,798 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,798 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,799 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,800 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-15T13:05:46,801 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,801 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,802 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/79/d1/c6278687d5c1b292bdb69419cb3c241a33cd049487e3f6f8c1ea49ae2f63/pyhmmer-0.6.3-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,803 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9b/fd/18eb2593b4e78f2b4c354ab2c27f44c7005c871cbb88f5979363f447a3f7/pyhmmer-0.6.3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,803 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/3d/29a3b664affa3d543bf179c4bc564028436d2d664750d07cb6747610d0bb/pyhmmer-0.6.3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,804 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/8a/c9f6d67ff2081be71d5bab224f86dc9fbba04b3a9005d98d1bd4e7abe711/pyhmmer-0.6.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,804 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/be/40/6efcf88705d32d27951d1d664a8cbb2d43e7b31afcd44c281b24d02f6f0d/pyhmmer-0.6.3-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,805 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/23/4f/5c7b8169544823f5a72bc2c6471a8f0d1f4d009ebab0ed93cef5c1e770cf/pyhmmer-0.6.3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,805 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/b5/82b7212a91c29b78d1de6a8d701bc49bf33965a2f312f12892b56e66d6cf/pyhmmer-0.6.3-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,806 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e7/cd/e8865ac7b2f95a62f3f31ecc1897006d8bd88d14516a8ab91409fcb4ed0c/pyhmmer-0.6.3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,806 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c0/2d/2fa37cb9c2b146fbcb6b616cf04750e7cb0654d9f3654426f5c34ec986a6/pyhmmer-0.6.3-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,807 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d3/8a/1f93b031bf44594726d5381ae9e701b44147707375140864becad63dc960/pyhmmer-0.6.3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,807 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b0/fe/6d1566d1b58a9cd0519ee81760177350e2bbba31683227a426e5485cfd61/pyhmmer-0.6.3-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,808 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/30/d4/c43a67e5b31e63a52e7a4204502adf4e43e7c3d5b2f453789d73935dd027/pyhmmer-0.6.3-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,808 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,810 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-12-15T13:05:46,810 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,811 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/49/f6/375ea7dec9ec46fe919687f992bf2f8326a7f08449a94b3fa316a02d67de/pyhmmer-0.7.0rc1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,811 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1f/aa/9f76d8281d452ce142cc95cbfaeac15c76b2960949b2f5c9e12695e53cbe/pyhmmer-0.7.0rc1-cp311-cp311-macosx_10_9_universal2.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,812 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0f/68/dd15664d24aceaef5e94f961bffa45d9095d8f8499d64e78eddddd1ef7a9/pyhmmer-0.7.0rc1-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,812 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e5/01/cb2f9126a8cc8a16f12651d80cad00f1c285451ba20ead2b461bb86ff5a7/pyhmmer-0.7.0rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,813 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7f/16/5269fa02ad5001fe304296e4de68cc3b316981363a07e0f620d034520e33/pyhmmer-0.7.0rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,813 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8f/6c/66722b1c98eb72b6f2264cda1392461ba1a7beefcca6e6d56edb7a58baab/pyhmmer-0.7.0rc1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,814 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e7/66/7146d3ffbb6917adcb31600e6b5037ecaafdf2198efaabe8b26519d3aad1/pyhmmer-0.7.0rc1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,820 Found link https://files.pythonhosted.org/packages/07/f9/aa30f9a062a03215706fd914a193d012c869409f0883406963f5097ec7f1/pyhmmer-0.7.0rc1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc1 2022-12-15T13:05:46,821 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/64/27ba87f3a6b5bd028bde8e63579e4fc7729abb207b6e9e700cbf51dc7b30/pyhmmer-0.7.0rc2-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,821 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/19/9f/c9bd67b4506ea74c87aa2170245f52a7ef31d9ab0091c1f341c6cf76fa9b/pyhmmer-0.7.0rc2-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,823 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/8a/03/ee7fbc006cfd40bacc68f90e34ae6c0648eeb66e63f1702c57a595f23beb/pyhmmer-0.7.0rc2-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,824 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/f6/b77002e48c526bdb1ec0bee0697ee021f31702ff7618adc1f7c8458638d8/pyhmmer-0.7.0rc2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,824 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c1/56/143d6ec67af6539abafac7d5ed7eda2f7dc4a22dc7ebeeb491a808a923a7/pyhmmer-0.7.0rc2-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,825 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c8/35/66d385727a9178511182bfe841a12d45f7f64425fdfdd9ed0d93e6a74bb8/pyhmmer-0.7.0rc2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,825 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e4/d8/d5d5bec33f7ef7e4162e43e846cec992055d17864c098a1e55b96a34050f/pyhmmer-0.7.0rc2-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/39/c0/6a46e969f7c1f77f5cc19011827469176b0569cbee1f2ec80f5865f49ad6/pyhmmer-0.7.0rc2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,826 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/1c/92/5602f15a7bbb92b08e92e4636813015754067aa97c0511ea1801852c1e66/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,827 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5a/ff/ece5bd11cf4cc3ec6f664f0e3a111ad6dcf207d3f6ec2ad96165259a412b/pyhmmer-0.7.0rc2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,827 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/31/df/48df1569e9c0b21ad86060b804c14fb3c91c3fa5aa95f09db8ff0e4c83e6/pyhmmer-0.7.0rc2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,830 Found link https://files.pythonhosted.org/packages/eb/b3/da26ba5e02d827e39ecbda73b5d7a7dbb805e94d3ae8829f3ce2adc8d027/pyhmmer-0.7.0rc2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc2 2022-12-15T13:05:46,831 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/53/91/36a44e2e838e58b36ebb192a899e6f889f112248fd08d1a877774db87a66/pyhmmer-0.7.0rc3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,831 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/10/f3/34c8cd78136ee6d53b229005b76e4949a99723c5b075683928676ff8a8ab/pyhmmer-0.7.0rc3-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,834 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/ba/8b/231ca0dbb96d64646a22c943988d7d94ffea8b77335f943ab23504493058/pyhmmer-0.7.0rc3-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,834 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a9/ed/b906f6c410f04eecda1943c731e45a73448a98ce8ca04984bfff107b217d/pyhmmer-0.7.0rc3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,835 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/a7/73/a2db2e27de1d9b6006d6db695b5238e850b9431ea7c57eea6988a6664b31/pyhmmer-0.7.0rc3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,837 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/46/35/599a1e9f081d8e5daa34f62c9225012ba906ae872d426f4b74a3a9d5b4fe/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,837 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0c/d7/389876620f3b9fe1feea99c9b6b482d8b1f115671c06fbaa92bda816c189/pyhmmer-0.7.0rc3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,838 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/5e/99/f426e48fd4c851ff69b0d669d9c7f782c7c8c0a4b753dd93d7dcdc18a91f/pyhmmer-0.7.0rc3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,841 Found link https://files.pythonhosted.org/packages/cb/78/d51baf5d1a2bd5040c253ca8a847b92f6a361d08ed6e108ae8ff10fae578/pyhmmer-0.7.0rc3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc3 2022-12-15T13:05:46,842 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/8c/41e7a4d44918a08c02a8b529d11d45180fc640cf2d21cc83427f0e5cfe06/pyhmmer-0.7.0rc4-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,843 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/0d/c4/049d1b55164a4593e7d7ef55b6f0364b03a7c863f7f9d6a4730c5995dc20/pyhmmer-0.7.0rc4-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,852 Found link https://files.pythonhosted.org/packages/64/87/65526708ee20e910b253cd36a32d655e4f4ae5efa92817b9d45f6e80a5f5/pyhmmer-0.7.0rc4.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0rc4 2022-12-15T13:05:46,853 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/db/a8/5302df454773f5b6a9dc9c29d540b3195f8d10ea47773bf5ba2fe934c065/pyhmmer-0.7.0-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,853 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/e5/f9/c669b9adabe8996277e8a2bb6f08568509ea95cadfcb76121150d24b5f93/pyhmmer-0.7.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,855 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4f/54/985dcf1e22569b0904bd17b1f17e713dc94a7ab13b767c9f5d90f54daba1/pyhmmer-0.7.0-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,856 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/04/5277c738b8789802cf308662e7eb69535a5dc04d77088937cf749173c7e2/pyhmmer-0.7.0-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,856 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,862 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2022-12-15T13:05:46,863 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/93/13708d5362f3eeeae6bb9dc49dd033e78b2f36556581dff3a1a4c8944b9e/pyhmmer-0.7.1rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,864 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4a/6a/b83eeb054f43e80c0cbe6877314d2a581b51252436da6a0b91fed65482d3/pyhmmer-0.7.1rc1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,866 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/3a/cb/fcf2cdb81b840f0d81299dad023301851aa18832f2dfd9f35a6b502f4ccd/pyhmmer-0.7.1rc1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,866 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/08/ef/d20b8278dbe3e1af0e5b3bced7315c98f4a53f84f42bbcd4c1ab4cfbaef3/pyhmmer-0.7.1rc1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,867 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/29/a9/acec031f4435e796440521c54f78f978cf91203615c29b07c7c9697840e7/pyhmmer-0.7.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,878 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/16/57009ec67d1b33dc1bddfd40c054d0fa2ed0970c357249b81ca9b2c80ac4/pyhmmer-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,878 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/61/e5d74affedd6c3ff3d2c17e8dd278921194411035ff093dbb17a8f3e4525/pyhmmer-0.7.1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,879 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/93/f3/b3f6892b4bb54f3e74c255b7e977acb1b0149601197c40d0e388c481897c/pyhmmer-0.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,879 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f5/95/fb8f90d881b6253d0ca29b0fd714b2237733721aa108b20272801822d7dc/pyhmmer-0.7.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,880 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,880 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,881 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,881 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,882 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:05:46,883 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2022-12-15T13:05:46,884 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:05:46,885 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:05:46,887 Found index url https://www.piwheels.org/simple 2022-12-15T13:05:47,119 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-15T13:05:47,121 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:05:47,122 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-15T13:05:47,166 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-15T13:05:47,197 Collecting pyhmmer==0.7.1 2022-12-15T13:05:47,201 Created temporary directory: /tmp/pip-unpack-_w1gmjlk 2022-12-15T13:05:48,796 Downloading pyhmmer-0.7.1.tar.gz (11.0 MB) 2022-12-15T13:06:00,093 Added pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-p5xfg_dd' 2022-12-15T13:06:00,103 Created temporary directory: /tmp/pip-build-env-gqe_6y0l 2022-12-15T13:06:00,114 Installing build dependencies: started 2022-12-15T13:06:00,117 Running command pip subprocess to install build dependencies 2022-12-15T13:06:02,845 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-15T13:06:03,647 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:06:03,700 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:06:07,592 Collecting setuptools>=46.4 2022-12-15T13:06:07,862 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-15T13:06:10,987 Collecting cython~=0.29.16 2022-12-15T13:06:11,497 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp37-cp37m-linux_armv7l.whl (2.3 MB) 2022-12-15T13:06:17,183 Installing collected packages: setuptools, cython 2022-12-15T13:06:27,129 Creating /tmp/pip-build-env-gqe_6y0l/overlay/bin 2022-12-15T13:06:27,133 changing mode of /tmp/pip-build-env-gqe_6y0l/overlay/bin/cygdb to 755 2022-12-15T13:06:27,138 changing mode of /tmp/pip-build-env-gqe_6y0l/overlay/bin/cython to 755 2022-12-15T13:06:27,142 changing mode of /tmp/pip-build-env-gqe_6y0l/overlay/bin/cythonize to 755 2022-12-15T13:06:27,191 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-15T13:06:27,222 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-15T13:06:27,223 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-15T13:06:27,722 Installing build dependencies: finished with status 'done' 2022-12-15T13:06:27,734 Getting requirements to build wheel: started 2022-12-15T13:06:27,736 Running command Getting requirements to build wheel 2022-12-15T13:06:30,418 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:06:30,630 Getting requirements to build wheel: finished with status 'done' 2022-12-15T13:06:30,667 Installing backend dependencies: started 2022-12-15T13:06:30,669 Running command pip subprocess to install backend dependencies 2022-12-15T13:06:33,392 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-15T13:06:34,203 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:06:34,257 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:06:35,123 Collecting wheel 2022-12-15T13:06:35,158 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-15T13:06:39,818 Installing collected packages: wheel 2022-12-15T13:06:40,099 Creating /tmp/pip-build-env-gqe_6y0l/normal/bin 2022-12-15T13:06:40,104 changing mode of /tmp/pip-build-env-gqe_6y0l/normal/bin/wheel to 755 2022-12-15T13:06:40,130 Successfully installed wheel-0.38.4 2022-12-15T13:06:40,160 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-15T13:06:40,160 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-15T13:06:40,521 Installing backend dependencies: finished with status 'done' 2022-12-15T13:06:40,526 Created temporary directory: /tmp/pip-modern-metadata-t2yb267r 2022-12-15T13:06:40,533 Preparing metadata (pyproject.toml): started 2022-12-15T13:06:40,535 Running command Preparing metadata (pyproject.toml) 2022-12-15T13:06:43,215 running dist_info 2022-12-15T13:06:43,247 creating /tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info 2022-12-15T13:06:43,258 writing /tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/PKG-INFO 2022-12-15T13:06:43,265 writing dependency_links to /tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/dependency_links.txt 2022-12-15T13:06:43,270 writing requirements to /tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/requires.txt 2022-12-15T13:06:43,273 writing top-level names to /tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/top_level.txt 2022-12-15T13:06:43,276 writing manifest file '/tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:06:43,391 reading manifest file '/tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:06:43,399 reading manifest template 'MANIFEST.in' 2022-12-15T13:06:44,649 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:06:44,649 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-15T13:06:44,654 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-15T13:06:44,658 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-15T13:06:44,661 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-15T13:06:44,665 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-15T13:06:44,668 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-15T13:06:44,671 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-15T13:06:44,675 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-15T13:06:44,678 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-15T13:06:44,682 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-15T13:06:44,685 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-15T13:06:44,689 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-15T13:06:44,692 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-15T13:06:44,695 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-15T13:06:44,696 adding license file 'COPYING' 2022-12-15T13:06:44,768 writing manifest file '/tmp/pip-modern-metadata-t2yb267r/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:06:44,772 creating '/tmp/pip-modern-metadata-t2yb267r/pyhmmer-0.7.1.dist-info' 2022-12-15T13:06:45,174 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-15T13:06:45,191 Source in /tmp/pip-wheel-nwau3nk2/pyhmmer_3c05a29eadc34c6db98dc97f2a7e10f2 has version 0.7.1, which satisfies requirement pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz 2022-12-15T13:06:45,193 Removed pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-p5xfg_dd' 2022-12-15T13:06:45,209 Created temporary directory: /tmp/pip-unpack-coqrz5o4 2022-12-15T13:06:45,210 Building wheels for collected packages: pyhmmer 2022-12-15T13:06:45,221 Created temporary directory: /tmp/pip-wheel-xvw7xv4j 2022-12-15T13:06:45,221 Destination directory: /tmp/pip-wheel-xvw7xv4j 2022-12-15T13:06:45,226 Building wheel for pyhmmer (pyproject.toml): started 2022-12-15T13:06:45,229 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-15T13:06:47,880 running bdist_wheel 2022-12-15T13:06:47,912 running build 2022-12-15T13:06:47,912 running build_py 2022-12-15T13:06:47,930 creating build 2022-12-15T13:06:47,931 creating build/lib.linux-armv7l-cpython-37 2022-12-15T13:06:47,932 creating build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:47,935 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:47,938 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:47,945 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:47,950 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,952 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,956 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,959 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,962 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,968 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:47,975 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,976 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,980 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,985 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,988 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,993 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:47,997 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,002 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,005 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,010 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,014 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,018 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,022 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,026 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_easel 2022-12-15T13:06:48,032 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,034 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,038 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,042 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,046 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,049 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,053 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,057 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,061 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,065 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,069 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,074 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,078 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,083 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/test_plan7 2022-12-15T13:06:48,086 running egg_info 2022-12-15T13:06:48,122 writing pyhmmer.egg-info/PKG-INFO 2022-12-15T13:06:48,128 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-15T13:06:48,133 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-15T13:06:48,135 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-15T13:06:48,172 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:06:48,217 reading manifest template 'MANIFEST.in' 2022-12-15T13:06:49,502 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:06:49,502 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-15T13:06:49,509 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-15T13:06:49,514 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-15T13:06:49,519 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-15T13:06:49,524 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-15T13:06:49,529 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-15T13:06:49,534 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-15T13:06:49,539 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-15T13:06:49,544 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-15T13:06:49,549 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-15T13:06:49,554 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-15T13:06:49,559 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-15T13:06:49,563 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-15T13:06:49,568 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-15T13:06:49,569 adding license file 'COPYING' 2022-12-15T13:06:49,667 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:06:49,695 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,696 !! 2022-12-15T13:06:49,697 ############################ 2022-12-15T13:06:49,697 # Package would be ignored # 2022-12-15T13:06:49,697 ############################ 2022-12-15T13:06:49,698 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-15T13:06:49,698 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,699 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-15T13:06:49,699 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,699 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,700 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-15T13:06:49,700 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,700 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,701 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,701 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,702 documentation page. 2022-12-15T13:06:49,702 !! 2022-12-15T13:06:49,703 check.warn(importable) 2022-12-15T13:06:49,703 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,704 !! 2022-12-15T13:06:49,705 ############################ 2022-12-15T13:06:49,705 # Package would be ignored # 2022-12-15T13:06:49,705 ############################ 2022-12-15T13:06:49,705 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-15T13:06:49,706 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,706 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-15T13:06:49,707 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,707 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,707 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-15T13:06:49,708 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,708 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,708 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,709 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,709 documentation page. 2022-12-15T13:06:49,710 !! 2022-12-15T13:06:49,711 check.warn(importable) 2022-12-15T13:06:49,711 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,711 !! 2022-12-15T13:06:49,712 ############################ 2022-12-15T13:06:49,712 # Package would be ignored # 2022-12-15T13:06:49,713 ############################ 2022-12-15T13:06:49,713 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-15T13:06:49,713 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,714 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-15T13:06:49,714 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,714 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,715 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-15T13:06:49,715 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,716 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,716 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,716 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,717 documentation page. 2022-12-15T13:06:49,718 !! 2022-12-15T13:06:49,718 check.warn(importable) 2022-12-15T13:06:49,718 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,719 !! 2022-12-15T13:06:49,720 ############################ 2022-12-15T13:06:49,720 # Package would be ignored # 2022-12-15T13:06:49,720 ############################ 2022-12-15T13:06:49,720 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-15T13:06:49,721 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,721 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-15T13:06:49,722 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,722 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,722 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-15T13:06:49,723 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,723 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,723 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,724 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,724 documentation page. 2022-12-15T13:06:49,725 !! 2022-12-15T13:06:49,726 check.warn(importable) 2022-12-15T13:06:49,726 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,726 !! 2022-12-15T13:06:49,727 ############################ 2022-12-15T13:06:49,727 # Package would be ignored # 2022-12-15T13:06:49,728 ############################ 2022-12-15T13:06:49,728 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-15T13:06:49,728 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,729 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-15T13:06:49,729 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,729 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,730 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-15T13:06:49,730 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,730 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,731 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,731 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,732 documentation page. 2022-12-15T13:06:49,733 !! 2022-12-15T13:06:49,733 check.warn(importable) 2022-12-15T13:06:49,733 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,734 !! 2022-12-15T13:06:49,735 ############################ 2022-12-15T13:06:49,735 # Package would be ignored # 2022-12-15T13:06:49,735 ############################ 2022-12-15T13:06:49,735 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-15T13:06:49,736 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,736 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-15T13:06:49,737 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,737 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,737 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-15T13:06:49,738 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,738 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,738 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,739 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,739 documentation page. 2022-12-15T13:06:49,740 !! 2022-12-15T13:06:49,740 check.warn(importable) 2022-12-15T13:06:49,741 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,741 !! 2022-12-15T13:06:49,742 ############################ 2022-12-15T13:06:49,742 # Package would be ignored # 2022-12-15T13:06:49,742 ############################ 2022-12-15T13:06:49,743 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-15T13:06:49,743 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,744 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-15T13:06:49,744 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,744 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,745 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-15T13:06:49,745 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,745 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,746 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,746 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,747 documentation page. 2022-12-15T13:06:49,747 !! 2022-12-15T13:06:49,748 check.warn(importable) 2022-12-15T13:06:49,748 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-15T13:06:49,748 !! 2022-12-15T13:06:49,749 ############################ 2022-12-15T13:06:49,750 # Package would be ignored # 2022-12-15T13:06:49,750 ############################ 2022-12-15T13:06:49,750 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-15T13:06:49,751 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:06:49,751 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-15T13:06:49,751 because it may contain data files, but this behavior is likely to change 2022-12-15T13:06:49,752 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:06:49,752 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-15T13:06:49,753 the `packages` configuration field or the proper discovery methods 2022-12-15T13:06:49,753 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:06:49,753 instead of `find_packages(...)`/`find:`). 2022-12-15T13:06:49,754 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:06:49,754 documentation page. 2022-12-15T13:06:49,755 !! 2022-12-15T13:06:49,756 check.warn(importable) 2022-12-15T13:06:49,770 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,775 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,780 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,785 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,791 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,796 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,812 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,816 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,821 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,825 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,831 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,838 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,858 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-37/pyhmmer 2022-12-15T13:06:49,862 creating build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-15T13:06:49,863 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-15T13:06:49,868 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-37/pyhmmer/fileobj 2022-12-15T13:06:49,874 creating build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,876 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,880 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,885 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,889 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,893 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,897 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,901 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-37/pyhmmer/reexports 2022-12-15T13:06:49,905 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests 2022-12-15T13:06:49,909 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-15T13:06:49,911 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data 2022-12-15T13:06:49,915 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-15T13:06:49,917 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms 2022-12-15T13:06:49,922 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-15T13:06:49,924 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-15T13:06:49,930 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-15T13:06:49,938 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-15T13:06:49,945 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/bin 2022-12-15T13:06:50,081 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,083 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,092 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,099 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,103 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,110 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,116 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,129 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,136 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,140 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,148 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,156 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,166 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,172 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,176 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,182 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,190 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,452 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,511 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,515 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,650 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/db 2022-12-15T13:06:50,769 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,770 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,785 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,794 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,805 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,816 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,833 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:50,855 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt 2022-12-15T13:06:51,143 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:06:51,145 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:06:51,154 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:06:51,167 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:06:51,177 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:06:51,404 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-15T13:06:51,406 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-15T13:06:51,410 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-15T13:06:51,415 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/jackhmmer 2022-12-15T13:06:51,420 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-15T13:06:51,422 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-15T13:06:51,427 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-15T13:06:51,433 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-15T13:06:51,438 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/msa 2022-12-15T13:06:51,444 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,445 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,498 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,514 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,785 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,795 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,800 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,806 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/seqs 2022-12-15T13:06:51,810 creating build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,812 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,817 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,822 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,827 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,831 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,835 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,839 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,846 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,850 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-37/pyhmmer/tests/data/tables 2022-12-15T13:06:51,864 running build_clib 2022-12-15T13:06:51,881 creating build/temp.linux-armv7l-cpython-37 2022-12-15T13:06:51,883 generating "divsufsort.h" for divsufsort library 2022-12-15T13:06:51,884 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-37/divsufsort.h 2022-12-15T13:06:51,888 generating "esl_config.h" for easel library 2022-12-15T13:06:51,891 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdio_h.c -o build/temp.linux-armv7l-cpython-37/have_stdio_h.o 2022-12-15T13:06:52,107 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-37/have_stdlib_h.o 2022-12-15T13:06:52,339 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_string_h.c -o build/temp.linux-armv7l-cpython-37/have_string_h.o 2022-12-15T13:06:52,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2022-12-15T13:06:52,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2022-12-15T13:06:52,887 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strings_h.c -o build/temp.linux-armv7l-cpython-37/have_strings_h.o 2022-12-15T13:06:53,063 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_stat_h.o 2022-12-15T13:06:53,246 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2022-12-15T13:06:53,443 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2022-12-15T13:06:53,640 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2022-12-15T13:06:53,819 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2022-12-15T13:06:54,077 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2022-12-15T13:06:54,327 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2022-12-15T13:06:54,512 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -Wno-all 2022-12-15T13:06:54,760 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-37/have_aligned_alloc.bin 2022-12-15T13:06:55,392 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2022-12-15T13:06:55,659 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2022-12-15T13:06:56,294 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2022-12-15T13:06:56,519 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2022-12-15T13:06:57,162 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -Wno-all 2022-12-15T13:06:57,400 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-37/have__mm_malloc.bin 2022-12-15T13:06:58,014 /usr/bin/ld: /tmp/cczx7tqO.ltrans0.ltrans.o: in function `main': 2022-12-15T13:06:58,015 :(.text.startup+0xc): undefined reference to `_mm_malloc' 2022-12-15T13:06:58,015 collect2: error: ld returned 1 exit status 2022-12-15T13:06:58,026 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2022-12-15T13:06:58,260 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2022-12-15T13:06:58,900 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -Wno-all 2022-12-15T13:06:59,165 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-37/have_posix_memalign.bin 2022-12-15T13:06:59,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2022-12-15T13:07:00,004 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2022-12-15T13:07:00,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2022-12-15T13:07:00,842 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2022-12-15T13:07:01,471 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2022-12-15T13:07:01,698 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2022-12-15T13:07:02,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2022-12-15T13:07:02,576 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2022-12-15T13:07:03,194 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2022-12-15T13:07:03,399 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2022-12-15T13:07:04,027 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fseeko.c -o build/temp.linux-armv7l-cpython-37/have_fseeko.o -Wno-all 2022-12-15T13:07:04,264 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fseeko.o -o build/temp.linux-armv7l-cpython-37/have_fseeko.bin 2022-12-15T13:07:04,905 generating "p7_config.h" for hmmer library 2022-12-15T13:07:04,908 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_endian_h.c -o build/temp.linux-armv7l-cpython-37/have_endian_h.o 2022-12-15T13:07:05,088 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-37/have_inttypes_h.o 2022-12-15T13:07:05,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stdint_h.c -o build/temp.linux-armv7l-cpython-37/have_stdint_h.o 2022-12-15T13:07:05,449 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_unistd_h.c -o build/temp.linux-armv7l-cpython-37/have_unistd_h.o 2022-12-15T13:07:05,647 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_types_h.o 2022-12-15T13:07:05,845 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-37/have_netinet_in_h.o 2022-12-15T13:07:06,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_param_h.o 2022-12-15T13:07:06,329 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-37/have_sys_sysctl_h.o 2022-12-15T13:07:06,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_mkstemp.c -o build/temp.linux-armv7l-cpython-37/have_mkstemp.o -Wno-all 2022-12-15T13:07:06,763 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_mkstemp.o -o build/temp.linux-armv7l-cpython-37/have_mkstemp.bin 2022-12-15T13:07:07,399 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_popen.c -o build/temp.linux-armv7l-cpython-37/have_popen.o -Wno-all 2022-12-15T13:07:07,634 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_popen.o -o build/temp.linux-armv7l-cpython-37/have_popen.bin 2022-12-15T13:07:08,275 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_putenv.c -o build/temp.linux-armv7l-cpython-37/have_putenv.o -Wno-all 2022-12-15T13:07:08,528 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_putenv.o -o build/temp.linux-armv7l-cpython-37/have_putenv.bin 2022-12-15T13:07:09,156 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -Wno-all 2022-12-15T13:07:09,358 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-37/have_strcasecmp.bin 2022-12-15T13:07:09,983 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_strsep.c -o build/temp.linux-armv7l-cpython-37/have_strsep.o -Wno-all 2022-12-15T13:07:10,193 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_strsep.o -o build/temp.linux-armv7l-cpython-37/have_strsep.bin 2022-12-15T13:07:10,822 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_times.c -o build/temp.linux-armv7l-cpython-37/have_times.o -Wno-all 2022-12-15T13:07:11,027 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_times.o -o build/temp.linux-armv7l-cpython-37/have_times.bin 2022-12-15T13:07:11,656 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getpid.c -o build/temp.linux-armv7l-cpython-37/have_getpid.o -Wno-all 2022-12-15T13:07:11,880 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getpid.o -o build/temp.linux-armv7l-cpython-37/have_getpid.bin 2022-12-15T13:07:12,514 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysctl.c -o build/temp.linux-armv7l-cpython-37/have_sysctl.o -Wno-all 2022-12-15T13:07:12,766 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysctl.o -o build/temp.linux-armv7l-cpython-37/have_sysctl.bin 2022-12-15T13:07:13,398 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_sysconf.c -o build/temp.linux-armv7l-cpython-37/have_sysconf.o -Wno-all 2022-12-15T13:07:13,625 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_sysconf.o -o build/temp.linux-armv7l-cpython-37/have_sysconf.bin 2022-12-15T13:07:14,261 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_getcwd.c -o build/temp.linux-armv7l-cpython-37/have_getcwd.o -Wno-all 2022-12-15T13:07:14,486 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_getcwd.o -o build/temp.linux-armv7l-cpython-37/have_getcwd.bin 2022-12-15T13:07:15,136 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_chmod.c -o build/temp.linux-armv7l-cpython-37/have_chmod.o -Wno-all 2022-12-15T13:07:15,350 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_chmod.o -o build/temp.linux-armv7l-cpython-37/have_chmod.bin 2022-12-15T13:07:15,991 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_stat.c -o build/temp.linux-armv7l-cpython-37/have_stat.o -Wno-all 2022-12-15T13:07:16,212 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_stat.o -o build/temp.linux-armv7l-cpython-37/have_stat.bin 2022-12-15T13:07:16,849 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_fstat.c -o build/temp.linux-armv7l-cpython-37/have_fstat.o -Wno-all 2022-12-15T13:07:17,072 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_fstat.o -o build/temp.linux-armv7l-cpython-37/have_fstat.bin 2022-12-15T13:07:17,704 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -c build/temp.linux-armv7l-cpython-37/have_erfc.c -o build/temp.linux-armv7l-cpython-37/have_erfc.o -Wno-all 2022-12-15T13:07:17,964 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-37/have_erfc.o -o build/temp.linux-armv7l-cpython-37/have_erfc.bin 2022-12-15T13:07:18,593 generating build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-15T13:07:18,619 generating build/temp.linux-armv7l-cpython-37/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-15T13:07:18,644 generating build/temp.linux-armv7l-cpython-37/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-15T13:07:18,718 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-15T13:07:18,720 creating build/temp.linux-armv7l-cpython-37/vendor 2022-12-15T13:07:18,721 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer 2022-12-15T13:07:18,722 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort 2022-12-15T13:07:18,724 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-15T13:07:27,746 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libdivsufsort.a build/temp.linux-armv7l-cpython-37/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-15T13:07:27,806 generating build/temp.linux-armv7l-cpython-37/libeasel.a from vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_gamma.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_exponential.c, vendor/easel/esl_red_black.c, vendor/easel/esl_random.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_normal.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_stats.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_msafile.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_mem.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_json.c, vendor/easel/esl_avx512.c, vendor/easel/esl_arr2.c, vendor/easel/esl_regexp.c, vendor/easel/esl_gencode.c, vendor/easel/esl_composition.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sse.c, vendor/easel/esl_wuss.c, vendor/easel/esl_histogram.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_weibull.c, vendor/easel/esl_buffer.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_ssi.c, vendor/easel/interface_gsl.c, vendor/easel/esl_cpu.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_neon.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_sq.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_sqio.c, vendor/easel/esl_getopts.c, vendor/easel/esl_cluster.c, vendor/easel/esl_mpi.c, vendor/easel/esl_distance.c, vendor/easel/esl_paml.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_msa.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_swat.c, vendor/easel/esl_graph.c, vendor/easel/esl_alloc.c, vendor/easel/esl_ratematrix.c, vendor/easel/esl_recorder.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_hmm.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_varint.c, vendor/easel/easel.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_tree.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_gev.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_bitfield.c, vendor/easel/esl_huffman.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_fileparser.c, vendor/easel/interface_lapack.c, vendor/easel/esl_vmx.c, vendor/easel/esl_arr3.c, vendor/easel/esl_threads.c, vendor/easel/esl_heap.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_rand64.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_stack.c, build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-15T13:07:27,814 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-15T13:07:27,815 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-15T13:07:27,816 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-15T13:07:27,817 creating build/temp.linux-armv7l-cpython-37/vendor/easel 2022-12-15T13:07:27,818 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-15T13:07:27,820 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o 2022-12-15T13:07:27,821 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o 2022-12-15T13:07:27,823 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-15T13:07:27,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o 2022-12-15T13:07:27,842 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o 2022-12-15T13:07:28,763 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-15T13:07:28,764 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o 2022-12-15T13:07:29,166 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-15T13:07:29,166 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-15T13:07:29,167 for (i = 0; i < a; i++) 2022-12-15T13:07:29,168 ^ 2022-12-15T13:07:29,665 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-15T13:07:29,666 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o 2022-12-15T13:07:30,787 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-15T13:07:30,789 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o 2022-12-15T13:07:30,802 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-15T13:07:30,805 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o 2022-12-15T13:07:30,930 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-15T13:07:30,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o 2022-12-15T13:07:31,686 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-15T13:07:31,688 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o 2022-12-15T13:07:32,223 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-15T13:07:32,225 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o 2022-12-15T13:07:32,281 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-15T13:07:32,283 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o 2022-12-15T13:07:33,005 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-15T13:07:33,007 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o 2022-12-15T13:07:33,443 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-15T13:07:33,445 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o 2022-12-15T13:07:34,037 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-15T13:07:34,039 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o 2022-12-15T13:07:34,309 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-15T13:07:34,311 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o 2022-12-15T13:07:34,837 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-15T13:07:34,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o 2022-12-15T13:07:34,861 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-15T13:07:34,864 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o 2022-12-15T13:07:34,887 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-15T13:07:34,890 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o 2022-12-15T13:07:35,441 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-15T13:07:35,443 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o 2022-12-15T13:07:35,524 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-15T13:07:35,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o 2022-12-15T13:07:36,630 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-15T13:07:36,631 vendor/easel/esl_regexp.c:793:6: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:07:36,631 int flags; 2022-12-15T13:07:36,632 ^~~~~ 2022-12-15T13:07:37,330 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-15T13:07:37,331 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:07:37,331 for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-15T13:07:37,332 ^ 2022-12-15T13:07:37,332 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-15T13:07:37,333 char *p; 2022-12-15T13:07:37,334 ^ 2022-12-15T13:07:37,368 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-15T13:07:37,370 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o 2022-12-15T13:07:38,045 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-15T13:07:38,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o 2022-12-15T13:07:38,968 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-15T13:07:38,970 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o 2022-12-15T13:07:40,105 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-15T13:07:40,106 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o 2022-12-15T13:07:40,146 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-15T13:07:40,149 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o 2022-12-15T13:07:40,384 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-15T13:07:40,386 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o 2022-12-15T13:07:41,064 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-15T13:07:41,065 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:07:41,065 return status; 2022-12-15T13:07:41,066 ^~~~~~ 2022-12-15T13:07:41,600 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-15T13:07:41,602 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o 2022-12-15T13:07:41,800 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-15T13:07:41,802 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o 2022-12-15T13:07:41,837 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-15T13:07:41,839 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o 2022-12-15T13:07:42,287 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-15T13:07:42,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o 2022-12-15T13:07:42,706 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-15T13:07:42,707 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-15T13:07:42,707 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:42,708 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:07:42,708 ^ 2022-12-15T13:07:42,709 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:07:42,710 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-15T13:07:42,710 ^~~~~~~ 2022-12-15T13:07:42,711 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:07:42,711 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:07:42,712 ^~~ 2022-12-15T13:07:42,713 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:07:42,713 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-15T13:07:42,714 ^~~~~~~ 2022-12-15T13:07:42,715 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:42,715 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:07:42,716 ^ 2022-12-15T13:07:42,716 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:07:42,716 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-15T13:07:42,717 ^~~~~~~ 2022-12-15T13:07:42,717 vendor/easel/easel.h:417:42: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:07:42,718 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:07:42,718 ^~~ 2022-12-15T13:07:42,718 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:07:42,719 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-15T13:07:42,719 ^~~~~~~ 2022-12-15T13:07:42,744 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-15T13:07:42,746 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o 2022-12-15T13:07:43,110 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-15T13:07:43,112 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o 2022-12-15T13:07:43,158 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-15T13:07:43,160 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:43,160 if (rank > h->n) 2022-12-15T13:07:43,161 ^ 2022-12-15T13:07:43,497 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-15T13:07:43,498 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o 2022-12-15T13:07:44,545 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-15T13:07:44,547 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o 2022-12-15T13:07:46,313 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-15T13:07:46,315 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o 2022-12-15T13:07:46,561 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-15T13:07:46,562 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o 2022-12-15T13:07:46,727 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-15T13:07:46,727 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:46,728 if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-15T13:07:46,729 ^~ 2022-12-15T13:07:47,344 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-15T13:07:47,346 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o 2022-12-15T13:07:47,720 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-15T13:07:47,721 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,722 if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-15T13:07:47,723 ^~ 2022-12-15T13:07:47,746 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-15T13:07:47,746 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,747 if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-15T13:07:47,748 ^ 2022-12-15T13:07:47,754 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-15T13:07:47,755 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,756 if (n > ns->plen) ns->plen = n; 2022-12-15T13:07:47,756 ^ 2022-12-15T13:07:47,759 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,759 for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-15T13:07:47,760 ^ 2022-12-15T13:07:47,761 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-15T13:07:47,761 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,762 if (n > ns->slen) ns->slen = n; 2022-12-15T13:07:47,762 ^ 2022-12-15T13:07:47,766 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,766 for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-15T13:07:47,767 ^ 2022-12-15T13:07:47,778 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-15T13:07:47,779 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,780 for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:07:47,780 ^ 2022-12-15T13:07:47,782 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,782 for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:07:47,783 ^ 2022-12-15T13:07:47,785 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,785 for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:07:47,786 ^ 2022-12-15T13:07:47,787 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,788 for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:07:47,789 ^ 2022-12-15T13:07:47,796 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-15T13:07:47,796 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,797 for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:07:47,797 ^ 2022-12-15T13:07:47,798 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,799 for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:07:47,799 ^ 2022-12-15T13:07:47,810 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-15T13:07:47,810 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,811 for (i = 0; i < ns->nprimary; i++) { 2022-12-15T13:07:47,811 ^ 2022-12-15T13:07:47,812 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,813 for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:07:47,813 ^ 2022-12-15T13:07:47,814 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,815 for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-15T13:07:47,815 ^ 2022-12-15T13:07:47,816 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,816 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-15T13:07:47,817 ^ 2022-12-15T13:07:47,817 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:07:47,818 for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-15T13:07:47,818 ^ 2022-12-15T13:07:48,347 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-15T13:07:48,349 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o 2022-12-15T13:07:48,432 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-15T13:07:48,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o 2022-12-15T13:07:48,662 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-15T13:07:48,664 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o 2022-12-15T13:07:48,785 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-15T13:07:48,787 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o 2022-12-15T13:07:49,024 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-15T13:07:49,024 static double stopwatch_getRealTime(void); 2022-12-15T13:07:49,025 ^~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:07:49,033 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-15T13:07:49,035 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o 2022-12-15T13:07:49,444 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-15T13:07:49,446 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o 2022-12-15T13:07:49,832 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-15T13:07:49,833 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,833 if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-15T13:07:49,834 ^~ 2022-12-15T13:07:49,835 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,835 if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-15T13:07:49,836 ^~ 2022-12-15T13:07:49,836 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,837 if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-15T13:07:49,837 ^~ 2022-12-15T13:07:49,859 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-15T13:07:49,859 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,860 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,860 ^~ 2022-12-15T13:07:49,861 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-15T13:07:49,862 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,862 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,863 ^~ 2022-12-15T13:07:49,864 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-15T13:07:49,864 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,865 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,865 ^~ 2022-12-15T13:07:49,870 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-15T13:07:49,871 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,871 if (status != eslOK || nres != W) { 2022-12-15T13:07:49,871 ^~ 2022-12-15T13:07:49,872 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,873 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,873 ^~ 2022-12-15T13:07:49,894 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-15T13:07:49,895 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,895 if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-15T13:07:49,896 ^ 2022-12-15T13:07:49,901 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,902 if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-15T13:07:49,902 ^~ 2022-12-15T13:07:49,904 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-15T13:07:49,904 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,905 if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-15T13:07:49,905 ^ 2022-12-15T13:07:49,906 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,906 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:07:49,907 ^~ 2022-12-15T13:07:49,907 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,908 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:07:49,908 ^ 2022-12-15T13:07:49,909 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,909 if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:07:49,909 ^ 2022-12-15T13:07:49,910 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,910 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-15T13:07:49,911 ^ 2022-12-15T13:07:49,911 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,912 if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-15T13:07:49,912 ^ 2022-12-15T13:07:49,912 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,913 for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-15T13:07:49,913 ^ 2022-12-15T13:07:49,914 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,914 if (inx < volume->end_seq) break; 2022-12-15T13:07:49,914 ^ 2022-12-15T13:07:49,915 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,915 if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-15T13:07:49,916 ^~ 2022-12-15T13:07:49,916 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,917 if (ncbi->index_start == -1 || inx > end) { 2022-12-15T13:07:49,917 ^~ 2022-12-15T13:07:49,917 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,918 if (ncbi->index_start == -1 || inx > end) { 2022-12-15T13:07:49,918 ^ 2022-12-15T13:07:49,919 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,920 if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:07:49,920 ^~ 2022-12-15T13:07:49,921 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,921 if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:07:49,921 ^~ 2022-12-15T13:07:49,922 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,922 if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:07:49,923 ^~ 2022-12-15T13:07:49,944 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-15T13:07:49,944 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,945 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,945 ^~ 2022-12-15T13:07:49,946 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,946 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:07:49,947 ^~ 2022-12-15T13:07:49,947 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,947 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:07:49,948 ^~ 2022-12-15T13:07:49,948 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-15T13:07:49,949 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,949 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,950 ^~ 2022-12-15T13:07:49,950 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,951 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:07:49,951 ^~ 2022-12-15T13:07:49,952 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,952 if (ncbi->seq_apos - sq->doff < size) { 2022-12-15T13:07:49,953 ^ 2022-12-15T13:07:49,962 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-15T13:07:49,962 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,963 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,963 ^~ 2022-12-15T13:07:49,964 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,964 if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:07:49,965 ^~ 2022-12-15T13:07:49,965 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-15T13:07:49,966 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,966 if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:07:49,967 ^~ 2022-12-15T13:07:49,983 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:49,984 if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-15T13:07:49,984 ^~ 2022-12-15T13:07:49,985 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-15T13:07:49,985 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,986 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-15T13:07:49,986 ^ 2022-12-15T13:07:49,987 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,988 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-15T13:07:49,988 ^ 2022-12-15T13:07:49,989 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,989 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-15T13:07:49,990 ^~ 2022-12-15T13:07:49,990 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-15T13:07:49,991 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,991 for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-15T13:07:49,992 ^ 2022-12-15T13:07:49,993 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,993 for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-15T13:07:49,994 ^ 2022-12-15T13:07:49,994 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:49,995 if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-15T13:07:49,995 ^~ 2022-12-15T13:07:50,002 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-15T13:07:50,002 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:50,003 if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-15T13:07:50,004 ^~ 2022-12-15T13:07:51,184 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-15T13:07:51,186 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o 2022-12-15T13:07:51,609 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-15T13:07:51,610 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:51,611 if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-15T13:07:51,611 ^~ 2022-12-15T13:07:52,141 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-15T13:07:52,143 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o 2022-12-15T13:07:52,342 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-15T13:07:52,344 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o 2022-12-15T13:07:52,881 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-15T13:07:52,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o 2022-12-15T13:07:53,089 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-15T13:07:53,091 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o 2022-12-15T13:07:54,490 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-15T13:07:54,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o 2022-12-15T13:07:55,267 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-15T13:07:55,269 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o 2022-12-15T13:07:55,581 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-15T13:07:55,581 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:07:55,582 for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-15T13:07:55,582 ^ 2022-12-15T13:07:55,878 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-15T13:07:55,880 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o 2022-12-15T13:07:55,897 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-15T13:07:55,899 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o 2022-12-15T13:07:56,341 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-15T13:07:56,343 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o 2022-12-15T13:07:56,641 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-15T13:07:56,643 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o 2022-12-15T13:07:57,085 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-15T13:07:57,086 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-15T13:07:57,086 for (pos = 0; pos < sq->n; pos++) 2022-12-15T13:07:57,087 ^ 2022-12-15T13:07:57,088 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-15T13:07:57,088 for (pos = 1; pos <= sq->n; pos++) 2022-12-15T13:07:57,089 ^~ 2022-12-15T13:07:58,990 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-15T13:07:58,992 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o 2022-12-15T13:07:59,521 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-15T13:07:59,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o 2022-12-15T13:07:59,904 In file included from vendor/easel/esl_hmm.c:9: 2022-12-15T13:07:59,904 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-15T13:07:59,905 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:07:59,906 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:07:59,906 ^ 2022-12-15T13:07:59,907 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:07:59,907 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-15T13:07:59,908 ^~~~~~~ 2022-12-15T13:07:59,908 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:07:59,909 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:07:59,909 ^~~ 2022-12-15T13:07:59,910 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:07:59,910 mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-15T13:07:59,911 ^~~~~~~ 2022-12-15T13:08:00,020 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-15T13:08:00,022 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:08:00,022 if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-15T13:08:00,023 ~~~~^~~~~~~ 2022-12-15T13:08:00,249 generating build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-15T13:08:00,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o 2022-12-15T13:08:00,711 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-15T13:08:00,712 vendor/easel/easel.c:1807:46: warning: operand of ?: changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:08:00,713 nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-15T13:08:00,713 ^~~~~~~~~~~~~~~~ 2022-12-15T13:08:01,827 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-15T13:08:01,829 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o 2022-12-15T13:08:02,237 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-15T13:08:02,238 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:02,239 if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-15T13:08:02,240 ^~ 2022-12-15T13:08:02,453 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-15T13:08:02,455 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o 2022-12-15T13:08:03,063 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-15T13:08:03,065 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o 2022-12-15T13:08:03,256 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-15T13:08:03,258 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o 2022-12-15T13:08:03,337 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-15T13:08:03,338 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:08:03,338 if (opt_fx) *opt_fx = fx; 2022-12-15T13:08:03,339 ~~~~~~~~^~~~ 2022-12-15T13:08:03,340 vendor/easel/esl_minimizer.c:711:18: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:08:03,341 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-15T13:08:03,341 ~~^~~ 2022-12-15T13:08:03,342 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-15T13:08:03,343 double ax,bx,cx; 2022-12-15T13:08:03,343 ^~ 2022-12-15T13:08:03,344 vendor/easel/esl_minimizer.c:711:8: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:08:03,345 x=v=w= a + c*(b-a); /* initial guess of x by golden section */ 2022-12-15T13:08:03,345 ~^~~~~~~~~~~~~ 2022-12-15T13:08:03,346 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-15T13:08:03,347 double ax,bx,cx; 2022-12-15T13:08:03,347 ^~ 2022-12-15T13:08:03,644 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-15T13:08:03,646 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o 2022-12-15T13:08:04,079 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-15T13:08:04,080 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o 2022-12-15T13:08:04,090 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-15T13:08:04,091 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:04,092 if (alphatype != dd->abc_r->type) 2022-12-15T13:08:04,092 ^~ 2022-12-15T13:08:04,116 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-15T13:08:04,117 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:08:04,117 if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-15T13:08:04,118 ^ 2022-12-15T13:08:04,119 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:04,119 n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-15T13:08:04,120 ^ 2022-12-15T13:08:04,120 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:04,121 n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-15T13:08:04,121 ^ 2022-12-15T13:08:04,122 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:04,123 n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-15T13:08:04,123 ^ 2022-12-15T13:08:04,128 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:04,128 if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-15T13:08:04,129 ^~ 2022-12-15T13:08:04,130 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:04,130 if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:08:04,131 ^~ 2022-12-15T13:08:04,131 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:04,132 if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:08:04,133 ^~ 2022-12-15T13:08:04,133 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:04,134 if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:08:04,134 ^~ 2022-12-15T13:08:04,208 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-15T13:08:04,209 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-15T13:08:04,209 } 2022-12-15T13:08:04,210 ^ 2022-12-15T13:08:04,224 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-15T13:08:04,224 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-15T13:08:04,225 } 2022-12-15T13:08:04,225 ^ 2022-12-15T13:08:04,567 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-15T13:08:04,569 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o 2022-12-15T13:08:04,832 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-15T13:08:04,834 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o 2022-12-15T13:08:04,974 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-15T13:08:04,976 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o 2022-12-15T13:08:05,786 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-15T13:08:05,788 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o 2022-12-15T13:08:06,267 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-15T13:08:06,270 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o 2022-12-15T13:08:06,687 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-15T13:08:06,689 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o 2022-12-15T13:08:07,326 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-15T13:08:07,328 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o 2022-12-15T13:08:08,196 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-15T13:08:08,198 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o 2022-12-15T13:08:08,457 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-15T13:08:08,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o 2022-12-15T13:08:08,518 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-15T13:08:08,521 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o 2022-12-15T13:08:08,782 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-15T13:08:08,784 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o 2022-12-15T13:08:08,827 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-15T13:08:08,828 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,828 for (h = 0; h < kh->hashsize; h++) 2022-12-15T13:08:08,829 ^ 2022-12-15T13:08:08,832 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-15T13:08:08,834 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,834 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:08:08,835 ^ 2022-12-15T13:08:08,843 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-15T13:08:08,844 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,844 for (h = 0; h < kh->hashsize; h++) 2022-12-15T13:08:08,845 ^ 2022-12-15T13:08:08,850 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-15T13:08:08,851 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,851 if (kh->nkeys > 3*kh->hashsize) 2022-12-15T13:08:08,852 ^ 2022-12-15T13:08:08,855 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-15T13:08:08,856 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,856 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:08:08,857 ^ 2022-12-15T13:08:08,860 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-15T13:08:08,861 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:08,862 for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:08:08,862 ^ 2022-12-15T13:08:09,115 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-15T13:08:09,120 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o 2022-12-15T13:08:09,393 generating build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-15T13:08:09,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o 2022-12-15T13:08:09,583 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-15T13:08:09,584 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o 2022-12-15T13:08:09,803 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-15T13:08:09,804 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o 2022-12-15T13:08:10,003 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-15T13:08:10,005 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o 2022-12-15T13:08:10,413 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-15T13:08:10,414 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o 2022-12-15T13:08:10,597 generating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c 2022-12-15T13:08:10,600 creating build/temp.linux-armv7l-cpython-37/build 2022-12-15T13:08:10,602 creating build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37 2022-12-15T13:08:10,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-15T13:08:11,128 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-15T13:08:11,128 build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:11,129 if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-15T13:08:11,129 ^~ 2022-12-15T13:08:11,402 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-15T13:08:11,403 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o 2022-12-15T13:08:15,269 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-15T13:08:15,271 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o 2022-12-15T13:08:18,569 generating build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-15T13:08:18,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o 2022-12-15T13:08:19,669 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-37/libeasel.a build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-37/vendor/easel/easel.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-37/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-37/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-37/build/temp.linux-armv7l-cpython-37/esl_sqio_ascii.o 2022-12-15T13:08:20,193 generating build/temp.linux-armv7l-cpython-37/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-37/p7_hmmfile.c 2022-12-15T13:08:20,202 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-15T13:08:20,203 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-15T13:08:20,204 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-15T13:08:20,205 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-15T13:08:20,206 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-15T13:08:20,207 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-15T13:08:20,208 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-15T13:08:20,210 creating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src 2022-12-15T13:08:20,210 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_fwdback.o 2022-12-15T13:08:20,211 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_msv.o 2022-12-15T13:08:20,238 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/build.o 2022-12-15T13:08:20,242 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/errors.o 2022-12-15T13:08:20,634 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-15T13:08:20,634 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:20,635 #error "No vector implementation enabled" 2022-12-15T13:08:20,636 ^~~~~ 2022-12-15T13:08:20,636 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,637 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:20,638 ^~~~~~ 2022-12-15T13:08:20,638 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,639 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:20,640 ^~~~~~ 2022-12-15T13:08:20,640 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,641 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:20,641 ^~~~~~ 2022-12-15T13:08:20,642 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,643 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:20,644 ^~~~~~ 2022-12-15T13:08:20,644 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-15T13:08:20,645 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:20,645 #error "No vector implementation enabled" 2022-12-15T13:08:20,646 ^~~~~ 2022-12-15T13:08:20,647 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,648 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:20,649 ^~~~~~~~~~~ 2022-12-15T13:08:20,650 P7_PROFILE 2022-12-15T13:08:20,656 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,658 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:20,659 ^~~~~~ 2022-12-15T13:08:20,659 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,660 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:20,660 ^~~~~~ 2022-12-15T13:08:20,661 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,661 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:20,662 ^~~~~~ 2022-12-15T13:08:20,662 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,663 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:20,664 ^~~~~~ 2022-12-15T13:08:20,664 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,665 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:20,665 ^~~~~~~~~~~ 2022-12-15T13:08:20,666 P7_PROFILE 2022-12-15T13:08:20,667 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,668 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:20,668 ^~~~~~~~~~~ 2022-12-15T13:08:20,669 P7_PROFILE 2022-12-15T13:08:20,670 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,671 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:20,671 ^~~~~~~~~~~ 2022-12-15T13:08:20,672 P7_PROFILE 2022-12-15T13:08:20,672 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,673 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:20,674 ^~~~~~~~~~~ 2022-12-15T13:08:20,675 P7_PROFILE 2022-12-15T13:08:20,676 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,676 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:20,677 ^~~~~~~~~~~ 2022-12-15T13:08:20,678 P7_PROFILE 2022-12-15T13:08:20,679 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,680 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:20,681 ^~~~~~~~~~~ 2022-12-15T13:08:20,682 P7_PROFILE 2022-12-15T13:08:20,682 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,683 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:20,684 ^~~~~~~~~~~ 2022-12-15T13:08:20,684 P7_PROFILE 2022-12-15T13:08:20,685 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,686 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:20,687 ^~~~~~~~~~~ 2022-12-15T13:08:20,688 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,689 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:20,689 ^~~~~~~~~~~ 2022-12-15T13:08:20,690 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,691 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:20,691 ^~~~~~~~~~~ 2022-12-15T13:08:20,691 P7_PROFILE 2022-12-15T13:08:20,692 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,692 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:20,693 ^~~~~~~~~~~ 2022-12-15T13:08:20,693 P7_PROFILE 2022-12-15T13:08:20,694 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,695 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,695 ^~~~~~~~~~~ 2022-12-15T13:08:20,696 P7_PROFILE 2022-12-15T13:08:20,696 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,697 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:20,698 ^~~~~~~~~~~ 2022-12-15T13:08:20,699 P7_PROFILE 2022-12-15T13:08:20,700 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,701 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,701 ^~~~~~ 2022-12-15T13:08:20,702 P7_GMX 2022-12-15T13:08:20,703 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,704 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:20,705 ^~~~~~~~~~~ 2022-12-15T13:08:20,706 P7_PROFILE 2022-12-15T13:08:20,706 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,707 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,708 ^~~~~~ 2022-12-15T13:08:20,709 P7_GMX 2022-12-15T13:08:20,710 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,710 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,711 ^~~~~~ 2022-12-15T13:08:20,712 P7_GMX 2022-12-15T13:08:20,713 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,714 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,714 ^~~~~~ 2022-12-15T13:08:20,715 P7_GMX 2022-12-15T13:08:20,716 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,716 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:20,717 ^~~~~~~~~~~ 2022-12-15T13:08:20,717 P7_PROFILE 2022-12-15T13:08:20,718 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,718 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:20,718 ^~~~~~~~~~~ 2022-12-15T13:08:20,719 P7_PROFILE 2022-12-15T13:08:20,720 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,721 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,721 ^~~~~~~~~~~ 2022-12-15T13:08:20,722 P7_PROFILE 2022-12-15T13:08:20,722 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,723 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:20,724 ^~~~~~~~~~~ 2022-12-15T13:08:20,725 P7_PROFILE 2022-12-15T13:08:20,726 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,726 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:20,727 ^~~~~~~~~~~ 2022-12-15T13:08:20,727 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,728 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,728 ^~~~~~ 2022-12-15T13:08:20,728 P7_GMX 2022-12-15T13:08:20,729 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,729 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:20,730 ^~~~~~~~~~~ 2022-12-15T13:08:20,731 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,731 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,732 ^~~~~~ 2022-12-15T13:08:20,733 P7_GMX 2022-12-15T13:08:20,733 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,734 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:20,735 ^~~~~~~~~~~ 2022-12-15T13:08:20,736 P7_PROFILE 2022-12-15T13:08:20,736 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,737 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:20,738 ^~~~~~~~~~~ 2022-12-15T13:08:20,738 P7_PROFILE 2022-12-15T13:08:20,739 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,740 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:20,741 ^~~~~~~~~~~ 2022-12-15T13:08:20,742 P7_PROFILE 2022-12-15T13:08:20,742 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,743 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,743 ^~~~~~ 2022-12-15T13:08:20,744 P7_GMX 2022-12-15T13:08:20,745 In file included from vendor/hmmer/src/build.c:32: 2022-12-15T13:08:20,745 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:20,746 #error "No vector implementation enabled" 2022-12-15T13:08:20,747 ^~~~~ 2022-12-15T13:08:20,748 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,749 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,750 ^~~~~~ 2022-12-15T13:08:20,750 P7_GMX 2022-12-15T13:08:20,750 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,751 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:20,752 ^~~~~~ 2022-12-15T13:08:20,752 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,753 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:20,754 ^~~~~~ 2022-12-15T13:08:20,755 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,755 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:20,756 ^~~~~~ 2022-12-15T13:08:20,756 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,757 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:20,758 ^~~~~~ 2022-12-15T13:08:20,759 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,760 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:20,760 ^~~~~~~~~~~ 2022-12-15T13:08:20,761 P7_PROFILE 2022-12-15T13:08:20,761 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,761 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:20,762 ^~~~~~~~~~~ 2022-12-15T13:08:20,763 P7_PROFILE 2022-12-15T13:08:20,764 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,765 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:20,765 ^~~~~~~~~~~ 2022-12-15T13:08:20,766 P7_PROFILE 2022-12-15T13:08:20,767 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,768 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:20,768 ^~~~~~~~~~~ 2022-12-15T13:08:20,769 P7_PROFILE 2022-12-15T13:08:20,769 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,770 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:20,771 ^~~~~~~~~~~ 2022-12-15T13:08:20,771 P7_PROFILE 2022-12-15T13:08:20,772 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,773 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:20,774 ^~~~~~~~~~~ 2022-12-15T13:08:20,774 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,775 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:20,775 ^~~~~~~~~~~ 2022-12-15T13:08:20,776 P7_PROFILE 2022-12-15T13:08:20,776 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,777 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:20,778 ^~~~~~~~~~~ 2022-12-15T13:08:20,778 P7_PROFILE 2022-12-15T13:08:20,779 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,780 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:20,780 ^~~~~~~~~~~ 2022-12-15T13:08:20,781 P7_PROFILE 2022-12-15T13:08:20,781 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,781 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:20,782 ^~~~~~~~~~~ 2022-12-15T13:08:20,782 P7_PROFILE 2022-12-15T13:08:20,783 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,784 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:20,784 ^~~~~~~~~~~ 2022-12-15T13:08:20,785 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,785 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:20,786 ^~~~~~~~~~~ 2022-12-15T13:08:20,787 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,788 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:20,789 ^~~~~~~~~~~ 2022-12-15T13:08:20,789 P7_PROFILE 2022-12-15T13:08:20,790 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,791 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,791 ^~~~~~~~~~~ 2022-12-15T13:08:20,792 P7_PROFILE 2022-12-15T13:08:20,792 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,793 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:20,793 ^~~~~~~~~~~ 2022-12-15T13:08:20,794 P7_PROFILE 2022-12-15T13:08:20,794 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,795 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,795 ^~~~~~ 2022-12-15T13:08:20,796 P7_GMX 2022-12-15T13:08:20,796 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,796 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,797 ^~~~~~ 2022-12-15T13:08:20,798 P7_GMX 2022-12-15T13:08:20,798 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,799 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,799 ^~~~~~ 2022-12-15T13:08:20,800 P7_GMX 2022-12-15T13:08:20,801 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,802 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,802 ^~~~~~ 2022-12-15T13:08:20,805 P7_GMX 2022-12-15T13:08:20,806 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,807 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:20,807 ^~~~~~~~~~~ 2022-12-15T13:08:20,808 P7_PROFILE 2022-12-15T13:08:20,809 In file included from vendor/hmmer/src/errors.c:19: 2022-12-15T13:08:20,810 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:20,811 #error "No vector implementation enabled" 2022-12-15T13:08:20,812 ^~~~~ 2022-12-15T13:08:20,812 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-15T13:08:20,813 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,813 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:20,814 ^~~~~~~~~~~ 2022-12-15T13:08:20,815 P7_PROFILE 2022-12-15T13:08:20,815 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,816 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:20,816 ^~~~~~ 2022-12-15T13:08:20,817 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,817 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:20,818 ^~~~~~ 2022-12-15T13:08:20,819 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,819 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:20,820 ^~~~~~ 2022-12-15T13:08:20,820 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:20,821 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:20,821 ^~~~~~ 2022-12-15T13:08:20,822 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/generic_vtrace.o 2022-12-15T13:08:20,827 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,828 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:20,828 ^~~~~~~~~~~ 2022-12-15T13:08:20,829 P7_PROFILE 2022-12-15T13:08:20,829 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,830 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:20,831 ^~~~~~~~~~~ 2022-12-15T13:08:20,831 P7_PROFILE 2022-12-15T13:08:20,832 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,833 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:20,834 ^~~~~~~~~~~ 2022-12-15T13:08:20,834 P7_PROFILE 2022-12-15T13:08:20,835 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,836 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:20,836 ^~~~~~~~~~~ 2022-12-15T13:08:20,837 P7_PROFILE 2022-12-15T13:08:20,838 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,838 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:20,839 ^~~~~~~~~~~ 2022-12-15T13:08:20,839 P7_PROFILE 2022-12-15T13:08:20,840 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,841 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:20,842 ^~~~~~~~~~~ 2022-12-15T13:08:20,843 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,844 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:20,845 ^~~~~~~~~~~ 2022-12-15T13:08:20,845 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,846 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:20,846 ^~~~~~~~~~~ 2022-12-15T13:08:20,847 P7_PROFILE 2022-12-15T13:08:20,848 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,849 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:20,850 ^~~~~~~~~~~ 2022-12-15T13:08:20,851 P7_PROFILE 2022-12-15T13:08:20,852 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,853 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:20,853 ^~~~~~~~~~~ 2022-12-15T13:08:20,854 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,854 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:20,855 ^~~~~~~~~~~ 2022-12-15T13:08:20,856 P7_PROFILE 2022-12-15T13:08:20,857 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,857 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:20,858 ^~~~~~~~~~~ 2022-12-15T13:08:20,858 P7_PROFILE 2022-12-15T13:08:20,858 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,859 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:20,860 ^~~~~~~~~~~ 2022-12-15T13:08:20,860 P7_PROFILE 2022-12-15T13:08:20,861 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,862 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:20,864 ^~~~~~~~~~~ 2022-12-15T13:08:20,865 P7_PROFILE 2022-12-15T13:08:20,865 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,866 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,866 ^~~~~~~~~~~ 2022-12-15T13:08:20,867 P7_PROFILE 2022-12-15T13:08:20,867 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,868 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,868 ^~~~~~ 2022-12-15T13:08:20,868 P7_GMX 2022-12-15T13:08:20,869 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,869 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,870 ^~~~~~ 2022-12-15T13:08:20,870 P7_GMX 2022-12-15T13:08:20,871 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,871 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,871 ^~~~~~ 2022-12-15T13:08:20,872 P7_GMX 2022-12-15T13:08:20,874 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:20,875 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:20,875 ^~~~~~ 2022-12-15T13:08:20,876 P7_GMX 2022-12-15T13:08:20,876 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,877 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:20,878 ^~~~~~~~~~~ 2022-12-15T13:08:20,879 P7_PROFILE 2022-12-15T13:08:20,880 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,880 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:20,881 ^~~~~~~~~~~ 2022-12-15T13:08:20,881 P7_PROFILE 2022-12-15T13:08:20,883 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,883 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:20,884 ^~~~~~~~~~~ 2022-12-15T13:08:20,885 P7_PROFILE 2022-12-15T13:08:20,885 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,886 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:20,886 ^~~~~~~~~~~ 2022-12-15T13:08:20,887 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:20,887 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:20,888 ^~~~~~~~~~~ 2022-12-15T13:08:20,888 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,889 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:20,889 ^~~~~~~~~~~ 2022-12-15T13:08:20,890 P7_PROFILE 2022-12-15T13:08:20,890 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,891 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:20,891 ^~~~~~~~~~~ 2022-12-15T13:08:20,891 P7_PROFILE 2022-12-15T13:08:20,892 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:20,892 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:20,893 ^~~~~~~~~~~ 2022-12-15T13:08:20,893 P7_PROFILE 2022-12-15T13:08:20,894 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-15T13:08:20,894 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr.o 2022-12-15T13:08:20,911 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-15T13:08:20,913 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-15T13:08:20,915 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-15T13:08:20,917 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/modelconfig.o 2022-12-15T13:08:21,113 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-15T13:08:21,115 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdutils.o 2022-12-15T13:08:21,117 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-15T13:08:21,118 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-15T13:08:21,299 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-15T13:08:21,300 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:21,300 #error "No vector implementation enabled" 2022-12-15T13:08:21,301 ^~~~~ 2022-12-15T13:08:21,303 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,304 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:21,304 ^~~~~~ 2022-12-15T13:08:21,305 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,305 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:21,306 ^~~~~~ 2022-12-15T13:08:21,306 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,307 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:21,308 ^~~~~~ 2022-12-15T13:08:21,308 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,309 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:21,309 ^~~~~~ 2022-12-15T13:08:21,310 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,311 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:21,312 ^~~~~~~~~~~ 2022-12-15T13:08:21,313 P7_PROFILE 2022-12-15T13:08:21,314 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,314 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:21,315 ^~~~~~~~~~~ 2022-12-15T13:08:21,316 P7_PROFILE 2022-12-15T13:08:21,317 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,318 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:21,319 ^~~~~~~~~~~ 2022-12-15T13:08:21,319 P7_PROFILE 2022-12-15T13:08:21,328 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,329 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:21,329 ^~~~~~~~~~~ 2022-12-15T13:08:21,330 P7_PROFILE 2022-12-15T13:08:21,330 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,331 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:21,332 ^~~~~~~~~~~ 2022-12-15T13:08:21,333 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,337 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:21,338 ^~~~~~~~~~~ 2022-12-15T13:08:21,338 P7_PROFILE 2022-12-15T13:08:21,350 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,350 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:21,351 ^~~~~~~~~~~ 2022-12-15T13:08:21,351 P7_PROFILE 2022-12-15T13:08:21,352 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,352 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,353 ^~~~~~~~~~~ 2022-12-15T13:08:21,353 P7_PROFILE 2022-12-15T13:08:21,354 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,354 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,355 ^~~~~~ 2022-12-15T13:08:21,356 P7_GMX 2022-12-15T13:08:21,356 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-15T13:08:21,357 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmd_search_status.o 2022-12-15T13:08:21,357 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,358 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,372 ^~~~~~ 2022-12-15T13:08:21,373 P7_GMX 2022-12-15T13:08:21,374 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,374 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,375 ^~~~~~ 2022-12-15T13:08:21,376 P7_GMX 2022-12-15T13:08:21,376 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-15T13:08:21,377 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/hmmer.o 2022-12-15T13:08:21,377 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,378 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,378 ^~~~~~ 2022-12-15T13:08:21,379 P7_GMX 2022-12-15T13:08:21,379 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,380 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:21,381 ^~~~~~~~~~~ 2022-12-15T13:08:21,382 P7_PROFILE 2022-12-15T13:08:21,383 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,384 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:21,385 ^~~~~~~~~~~ 2022-12-15T13:08:21,385 P7_PROFILE 2022-12-15T13:08:21,386 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,387 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:21,387 ^~~~~~~~~~~ 2022-12-15T13:08:21,387 P7_PROFILE 2022-12-15T13:08:21,388 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,388 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:21,389 ^~~~~~~~~~~ 2022-12-15T13:08:21,389 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,390 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:21,391 ^~~~~~~~~~~ 2022-12-15T13:08:21,392 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,392 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:21,392 ^~~~~~~~~~~ 2022-12-15T13:08:21,393 P7_PROFILE 2022-12-15T13:08:21,393 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,394 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:21,395 ^~~~~~~~~~~ 2022-12-15T13:08:21,396 P7_PROFILE 2022-12-15T13:08:21,396 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,397 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:21,398 ^~~~~~~~~~~ 2022-12-15T13:08:21,398 P7_PROFILE 2022-12-15T13:08:21,403 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-15T13:08:21,403 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:21,404 #error "No vector implementation enabled" 2022-12-15T13:08:21,404 ^~~~~ 2022-12-15T13:08:21,405 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,406 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:21,407 ^~~~~~ 2022-12-15T13:08:21,407 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,408 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:21,408 ^~~~~~ 2022-12-15T13:08:21,409 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,409 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:21,410 ^~~~~~ 2022-12-15T13:08:21,413 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,414 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:21,414 ^~~~~~ 2022-12-15T13:08:21,415 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,415 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:21,416 ^~~~~~~~~~~ 2022-12-15T13:08:21,417 P7_PROFILE 2022-12-15T13:08:21,417 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,418 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:21,418 ^~~~~~~~~~~ 2022-12-15T13:08:21,418 P7_PROFILE 2022-12-15T13:08:21,419 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,420 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:21,420 ^~~~~~~~~~~ 2022-12-15T13:08:21,421 P7_PROFILE 2022-12-15T13:08:21,421 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,422 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:21,422 ^~~~~~~~~~~ 2022-12-15T13:08:21,423 P7_PROFILE 2022-12-15T13:08:21,426 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,427 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:21,427 ^~~~~~~~~~~ 2022-12-15T13:08:21,432 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,433 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:21,433 ^~~~~~~~~~~ 2022-12-15T13:08:21,434 P7_PROFILE 2022-12-15T13:08:21,437 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-15T13:08:21,439 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/tracealign.o 2022-12-15T13:08:21,449 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,449 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:21,450 ^~~~~~~~~~~ 2022-12-15T13:08:21,451 P7_PROFILE 2022-12-15T13:08:21,453 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,454 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,455 ^~~~~~~~~~~ 2022-12-15T13:08:21,455 P7_PROFILE 2022-12-15T13:08:21,456 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,457 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,458 ^~~~~~ 2022-12-15T13:08:21,458 P7_GMX 2022-12-15T13:08:21,466 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,466 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,467 ^~~~~~ 2022-12-15T13:08:21,467 P7_GMX 2022-12-15T13:08:21,467 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,468 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,468 ^~~~~~ 2022-12-15T13:08:21,469 P7_GMX 2022-12-15T13:08:21,470 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,470 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,471 ^~~~~~ 2022-12-15T13:08:21,471 P7_GMX 2022-12-15T13:08:21,473 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,474 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:21,474 ^~~~~~~~~~~ 2022-12-15T13:08:21,474 P7_PROFILE 2022-12-15T13:08:21,476 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,477 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:21,478 ^~~~~~~~~~~ 2022-12-15T13:08:21,478 P7_PROFILE 2022-12-15T13:08:21,482 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,493 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:21,494 ^~~~~~~~~~~ 2022-12-15T13:08:21,495 P7_PROFILE 2022-12-15T13:08:21,495 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,496 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:21,496 ^~~~~~~~~~~ 2022-12-15T13:08:21,497 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,497 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:21,498 ^~~~~~~~~~~ 2022-12-15T13:08:21,498 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,499 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:21,499 ^~~~~~~~~~~ 2022-12-15T13:08:21,500 P7_PROFILE 2022-12-15T13:08:21,500 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,501 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:21,501 ^~~~~~~~~~~ 2022-12-15T13:08:21,501 P7_PROFILE 2022-12-15T13:08:21,505 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,506 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:21,506 ^~~~~~~~~~~ 2022-12-15T13:08:21,507 P7_PROFILE 2022-12-15T13:08:21,561 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-15T13:08:21,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_domain.o 2022-12-15T13:08:21,816 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-15T13:08:21,817 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:21,817 #error "No vector implementation enabled" 2022-12-15T13:08:21,818 ^~~~~ 2022-12-15T13:08:21,819 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,819 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:21,820 ^~~~~~ 2022-12-15T13:08:21,820 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,821 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:21,822 ^~~~~~ 2022-12-15T13:08:21,822 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,823 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:21,824 ^~~~~~ 2022-12-15T13:08:21,824 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,825 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:21,826 ^~~~~~ 2022-12-15T13:08:21,826 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-15T13:08:21,827 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:21,827 #error "No vector implementation enabled" 2022-12-15T13:08:21,828 ^~~~~ 2022-12-15T13:08:21,829 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,830 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:21,831 ^~~~~~ 2022-12-15T13:08:21,831 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,832 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:21,833 ^~~~~~ 2022-12-15T13:08:21,839 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,839 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:21,840 ^~~~~~~~~~~ 2022-12-15T13:08:21,841 P7_PROFILE 2022-12-15T13:08:21,841 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,842 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:21,844 ^~~~~~ 2022-12-15T13:08:21,854 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,854 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:21,855 ^~~~~~ 2022-12-15T13:08:21,856 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,857 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:21,858 ^~~~~~~~~~~ 2022-12-15T13:08:21,858 P7_PROFILE 2022-12-15T13:08:21,859 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,860 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:21,861 ^~~~~~~~~~~ 2022-12-15T13:08:21,862 P7_PROFILE 2022-12-15T13:08:21,862 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,871 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:21,872 ^~~~~~~~~~~ 2022-12-15T13:08:21,875 P7_PROFILE 2022-12-15T13:08:21,876 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,876 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:21,877 ^~~~~~~~~~~ 2022-12-15T13:08:21,878 P7_PROFILE 2022-12-15T13:08:21,879 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,880 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:21,881 ^~~~~~~~~~~ 2022-12-15T13:08:21,881 P7_PROFILE 2022-12-15T13:08:21,882 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,882 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:21,882 ^~~~~~~~~~~ 2022-12-15T13:08:21,883 P7_PROFILE 2022-12-15T13:08:21,884 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,885 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:21,886 ^~~~~~~~~~~ 2022-12-15T13:08:21,886 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,887 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:21,888 ^~~~~~~~~~~ 2022-12-15T13:08:21,889 P7_PROFILE 2022-12-15T13:08:21,890 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,890 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:21,891 ^~~~~~~~~~~ 2022-12-15T13:08:21,891 P7_PROFILE 2022-12-15T13:08:21,892 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,892 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:21,893 ^~~~~~~~~~~ 2022-12-15T13:08:21,913 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,914 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:21,915 ^~~~~~~~~~~ 2022-12-15T13:08:21,915 P7_PROFILE 2022-12-15T13:08:21,916 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,916 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,916 ^~~~~~~~~~~ 2022-12-15T13:08:21,917 P7_PROFILE 2022-12-15T13:08:21,917 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,918 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:21,918 ^~~~~~~~~~~ 2022-12-15T13:08:21,919 P7_PROFILE 2022-12-15T13:08:21,919 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,920 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,920 ^~~~~~ 2022-12-15T13:08:21,920 P7_GMX 2022-12-15T13:08:21,921 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,922 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:21,922 ^~~~~~~~~~~ 2022-12-15T13:08:21,923 P7_PROFILE 2022-12-15T13:08:21,934 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,934 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,935 ^~~~~~ 2022-12-15T13:08:21,935 P7_GMX 2022-12-15T13:08:21,936 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,936 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,937 ^~~~~~~~~~~ 2022-12-15T13:08:21,937 P7_PROFILE 2022-12-15T13:08:21,938 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,938 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,938 ^~~~~~ 2022-12-15T13:08:21,944 P7_GMX 2022-12-15T13:08:21,945 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,945 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,946 ^~~~~~ 2022-12-15T13:08:21,946 P7_GMX 2022-12-15T13:08:21,947 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,947 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,948 ^~~~~~ 2022-12-15T13:08:21,948 P7_GMX 2022-12-15T13:08:21,949 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,949 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,949 ^~~~~~ 2022-12-15T13:08:21,950 P7_GMX 2022-12-15T13:08:21,950 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,951 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:21,951 ^~~~~~~~~~~ 2022-12-15T13:08:21,952 P7_PROFILE 2022-12-15T13:08:21,952 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,952 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,953 ^~~~~~ 2022-12-15T13:08:21,954 P7_GMX 2022-12-15T13:08:21,954 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,955 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:21,955 ^~~~~~~~~~~ 2022-12-15T13:08:21,956 P7_PROFILE 2022-12-15T13:08:21,956 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:21,958 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:21,959 ^~~~~~ 2022-12-15T13:08:21,959 P7_GMX 2022-12-15T13:08:21,960 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,960 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:21,961 ^~~~~~~~~~~ 2022-12-15T13:08:21,961 P7_PROFILE 2022-12-15T13:08:21,962 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,962 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:21,963 ^~~~~~~~~~~ 2022-12-15T13:08:21,963 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,964 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:21,964 ^~~~~~~~~~~ 2022-12-15T13:08:21,965 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,965 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:21,966 ^~~~~~~~~~~ 2022-12-15T13:08:21,966 P7_PROFILE 2022-12-15T13:08:21,967 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,967 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:21,968 ^~~~~~~~~~~ 2022-12-15T13:08:21,968 P7_PROFILE 2022-12-15T13:08:21,969 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,969 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:21,970 ^~~~~~~~~~~ 2022-12-15T13:08:21,970 P7_PROFILE 2022-12-15T13:08:21,971 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,971 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:21,972 ^~~~~~~~~~~ 2022-12-15T13:08:21,972 P7_PROFILE 2022-12-15T13:08:21,973 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,973 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:21,974 ^~~~~~~~~~~ 2022-12-15T13:08:21,974 P7_PROFILE 2022-12-15T13:08:21,975 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,975 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:21,976 ^~~~~~~~~~~ 2022-12-15T13:08:21,976 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:21,977 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:21,977 ^~~~~~~~~~~ 2022-12-15T13:08:21,978 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,978 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:21,979 ^~~~~~~~~~~ 2022-12-15T13:08:21,979 P7_PROFILE 2022-12-15T13:08:21,980 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,980 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:21,981 ^~~~~~~~~~~ 2022-12-15T13:08:21,981 P7_PROFILE 2022-12-15T13:08:21,982 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,982 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:21,982 ^~~~~~~~~~~ 2022-12-15T13:08:21,983 P7_PROFILE 2022-12-15T13:08:21,984 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,984 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:21,985 ^~~~~~~~~~~ 2022-12-15T13:08:21,985 P7_PROFILE 2022-12-15T13:08:21,986 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-15T13:08:21,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_gmxb.o 2022-12-15T13:08:21,987 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-15T13:08:21,987 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_hmmcache.o 2022-12-15T13:08:21,988 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-15T13:08:21,988 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:21,989 #error "No vector implementation enabled" 2022-12-15T13:08:21,989 ^~~~~ 2022-12-15T13:08:21,990 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,990 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:21,991 ^~~~~~ 2022-12-15T13:08:21,991 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,992 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:21,992 ^~~~~~ 2022-12-15T13:08:21,993 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,994 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:21,994 ^~~~~~ 2022-12-15T13:08:21,995 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:21,995 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:21,996 ^~~~~~ 2022-12-15T13:08:21,997 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:21,998 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:21,998 ^~~~~~~~~~~ 2022-12-15T13:08:21,999 P7_PROFILE 2022-12-15T13:08:22,001 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,002 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,002 ^~~~~~~~~~~ 2022-12-15T13:08:22,003 P7_PROFILE 2022-12-15T13:08:22,004 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,005 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,006 ^~~~~~~~~~~ 2022-12-15T13:08:22,007 P7_PROFILE 2022-12-15T13:08:22,008 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,009 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,009 ^~~~~~~~~~~ 2022-12-15T13:08:22,010 P7_PROFILE 2022-12-15T13:08:22,013 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,013 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,014 ^~~~~~~~~~~ 2022-12-15T13:08:22,019 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,020 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,021 ^~~~~~~~~~~ 2022-12-15T13:08:22,021 P7_PROFILE 2022-12-15T13:08:22,023 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,023 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,024 ^~~~~~~~~~~ 2022-12-15T13:08:22,025 P7_PROFILE 2022-12-15T13:08:22,027 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,028 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,029 ^~~~~~~~~~~ 2022-12-15T13:08:22,029 P7_PROFILE 2022-12-15T13:08:22,031 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,032 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,033 ^~~~~~ 2022-12-15T13:08:22,033 P7_GMX 2022-12-15T13:08:22,036 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,037 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,037 ^~~~~~ 2022-12-15T13:08:22,038 P7_GMX 2022-12-15T13:08:22,039 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,040 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,041 ^~~~~~ 2022-12-15T13:08:22,041 P7_GMX 2022-12-15T13:08:22,043 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,043 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,044 ^~~~~~ 2022-12-15T13:08:22,044 P7_GMX 2022-12-15T13:08:22,059 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,060 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,060 ^~~~~~~~~~~ 2022-12-15T13:08:22,061 P7_PROFILE 2022-12-15T13:08:22,063 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,063 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,064 ^~~~~~~~~~~ 2022-12-15T13:08:22,064 P7_PROFILE 2022-12-15T13:08:22,065 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-15T13:08:22,065 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:22,065 #error "No vector implementation enabled" 2022-12-15T13:08:22,066 ^~~~~ 2022-12-15T13:08:22,067 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,068 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:22,068 ^~~~~~ 2022-12-15T13:08:22,069 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,069 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:22,070 ^~~~~~ 2022-12-15T13:08:22,070 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,071 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:22,071 ^~~~~~ 2022-12-15T13:08:22,072 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,073 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:22,073 ^~~~~~ 2022-12-15T13:08:22,076 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,077 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,077 ^~~~~~~~~~~ 2022-12-15T13:08:22,078 P7_PROFILE 2022-12-15T13:08:22,079 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,080 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,080 ^~~~~~~~~~~ 2022-12-15T13:08:22,080 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,081 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,082 ^~~~~~~~~~~ 2022-12-15T13:08:22,082 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,083 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,084 ^~~~~~~~~~~ 2022-12-15T13:08:22,085 P7_PROFILE 2022-12-15T13:08:22,085 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,086 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:22,086 ^~~~~~~~~~~ 2022-12-15T13:08:22,087 P7_PROFILE 2022-12-15T13:08:22,088 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,088 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,088 ^~~~~~~~~~~ 2022-12-15T13:08:22,089 P7_PROFILE 2022-12-15T13:08:22,090 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,090 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,091 ^~~~~~~~~~~ 2022-12-15T13:08:22,092 P7_PROFILE 2022-12-15T13:08:22,095 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,095 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,096 ^~~~~~~~~~~ 2022-12-15T13:08:22,096 P7_PROFILE 2022-12-15T13:08:22,103 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,103 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,104 ^~~~~~~~~~~ 2022-12-15T13:08:22,104 P7_PROFILE 2022-12-15T13:08:22,105 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,105 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,106 ^~~~~~~~~~~ 2022-12-15T13:08:22,106 P7_PROFILE 2022-12-15T13:08:22,108 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,108 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,109 ^~~~~~~~~~~ 2022-12-15T13:08:22,113 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,113 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,114 ^~~~~~~~~~~ 2022-12-15T13:08:22,114 P7_PROFILE 2022-12-15T13:08:22,127 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-15T13:08:22,128 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,129 P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-15T13:08:22,129 ^~~~~~ 2022-12-15T13:08:22,130 P7_GMX 2022-12-15T13:08:22,131 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,131 P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-15T13:08:22,132 ^~~~~~ 2022-12-15T13:08:22,133 P7_GMX 2022-12-15T13:08:22,136 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,137 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,137 ^~~~~~~~~~~ 2022-12-15T13:08:22,138 P7_PROFILE 2022-12-15T13:08:22,141 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,142 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,142 ^~~~~~~~~~~ 2022-12-15T13:08:22,143 P7_PROFILE 2022-12-15T13:08:22,144 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,145 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,146 ^~~~~~ 2022-12-15T13:08:22,147 P7_GMX 2022-12-15T13:08:22,148 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,148 P7_OPROFILE *om = NULL; 2022-12-15T13:08:22,149 ^~~~~~~~~~~ 2022-12-15T13:08:22,150 P7_PROFILE 2022-12-15T13:08:22,151 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,151 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,152 ^~~~~~ 2022-12-15T13:08:22,152 P7_GMX 2022-12-15T13:08:22,153 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,154 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-15T13:08:22,154 ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,155 p7_profile_Create 2022-12-15T13:08:22,155 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:08:22,156 om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-15T13:08:22,156 ^ 2022-12-15T13:08:22,157 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,157 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,158 ^~~~~~ 2022-12-15T13:08:22,158 P7_GMX 2022-12-15T13:08:22,158 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,159 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,159 ^~~~~~ 2022-12-15T13:08:22,160 P7_GMX 2022-12-15T13:08:22,163 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,164 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,165 ^~~~~~~~~~~ 2022-12-15T13:08:22,165 P7_PROFILE 2022-12-15T13:08:22,167 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,168 p7_oprofile_Convert(gm, om); 2022-12-15T13:08:22,169 ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,170 p7_profile_Compare 2022-12-15T13:08:22,170 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,171 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,172 ^~~~~~~~~~~ 2022-12-15T13:08:22,172 P7_PROFILE 2022-12-15T13:08:22,173 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,174 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:08:22,175 ^~~~~~~~~~~~~ 2022-12-15T13:08:22,175 p7_gmx_Create 2022-12-15T13:08:22,176 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:08:22,176 oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:08:22,177 ^ 2022-12-15T13:08:22,178 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:08:22,178 oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:08:22,179 ^ 2022-12-15T13:08:22,180 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,180 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,181 ^~~~~~~~~~~ 2022-12-15T13:08:22,181 P7_PROFILE 2022-12-15T13:08:22,181 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,182 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,182 ^~~~~~~~~~~ 2022-12-15T13:08:22,183 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,183 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,184 ^~~~~~~~~~~ 2022-12-15T13:08:22,185 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,185 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,186 ^~~~~~~~~~~ 2022-12-15T13:08:22,187 P7_PROFILE 2022-12-15T13:08:22,187 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,188 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,188 ^~~~~~~~~~~ 2022-12-15T13:08:22,189 P7_PROFILE 2022-12-15T13:08:22,189 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,190 p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-15T13:08:22,190 ^~~~~~~~~~~~~ 2022-12-15T13:08:22,191 p7_gmx_GrowTo 2022-12-15T13:08:22,191 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,192 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,193 ^~~~~~~~~~~ 2022-12-15T13:08:22,193 P7_PROFILE 2022-12-15T13:08:22,196 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-15T13:08:22,197 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,198 network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-15T13:08:22,198 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,199 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,199 network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-15T13:08:22,200 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,200 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,200 network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-15T13:08:22,201 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,201 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,202 network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-15T13:08:22,202 ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,203 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,203 network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-15T13:08:22,204 ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,204 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,205 network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-15T13:08:22,205 ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,206 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:22,206 if (ser_size != ptr - (*buf + *n)){ 2022-12-15T13:08:22,207 ^~ 2022-12-15T13:08:22,208 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-15T13:08:22,208 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,209 ret_obj->envsc = *((float *) &host_32bit); 2022-12-15T13:08:22,209 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,210 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,211 ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-15T13:08:22,211 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,212 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,212 ret_obj->dombias = *((float *) &host_32bit); 2022-12-15T13:08:22,213 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,214 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,214 ret_obj->oasc = *((float *) &host_32bit); 2022-12-15T13:08:22,215 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,215 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,216 p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-15T13:08:22,216 ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,217 p7_ReconfigLength 2022-12-15T13:08:22,217 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,217 ret_obj->bitscore = *((float *) &host_32bit); 2022-12-15T13:08:22,218 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,218 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,219 ret_obj->lnP = *((double *) &host_64bit); 2022-12-15T13:08:22,220 ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,221 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:08:22,222 ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-15T13:08:22,223 ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,224 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,225 p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-15T13:08:22,225 ^~~~~~~~~~ 2022-12-15T13:08:22,226 p7_GForward 2022-12-15T13:08:22,226 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:22,226 if(ptr - (buf + *n) != obj_size){ 2022-12-15T13:08:22,227 ^~ 2022-12-15T13:08:22,228 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,228 p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-15T13:08:22,229 ^~~~~~~~~~~ 2022-12-15T13:08:22,229 p7_GBackward 2022-12-15T13:08:22,230 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,231 status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-15T13:08:22,232 ^~~~~~~~~~~ 2022-12-15T13:08:22,232 p7_GDecoding 2022-12-15T13:08:22,233 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,233 p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-15T13:08:22,234 ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,234 p7_GOptimalAccuracy 2022-12-15T13:08:22,237 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,237 p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-15T13:08:22,238 ^~~~~~~~~~ 2022-12-15T13:08:22,238 p7_GOATrace 2022-12-15T13:08:22,255 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,256 p7_omx_Reuse(oxf); 2022-12-15T13:08:22,257 ^~~~~~~~~~~~ 2022-12-15T13:08:22,257 p7_gmx_Reuse 2022-12-15T13:08:22,258 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-15T13:08:22,273 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_prior.o 2022-12-15T13:08:22,274 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,274 p7_omx_Destroy(oxf); 2022-12-15T13:08:22,275 ^~~~~~~~~~~~~~ 2022-12-15T13:08:22,275 p7_gmx_Destroy 2022-12-15T13:08:22,276 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,276 p7_oprofile_Destroy(om); 2022-12-15T13:08:22,276 ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,277 p7_profile_Destroy 2022-12-15T13:08:22,392 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-15T13:08:22,394 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/p7_trace.o 2022-12-15T13:08:22,451 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-15T13:08:22,451 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:22,452 #error "No vector implementation enabled" 2022-12-15T13:08:22,452 ^~~~~ 2022-12-15T13:08:22,454 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,455 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:22,456 ^~~~~~ 2022-12-15T13:08:22,457 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,457 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:22,458 ^~~~~~ 2022-12-15T13:08:22,459 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,460 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:22,460 ^~~~~~ 2022-12-15T13:08:22,461 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,462 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:22,462 ^~~~~~ 2022-12-15T13:08:22,463 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,466 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:22,467 ^~~~~~~~~~~ 2022-12-15T13:08:22,467 P7_PROFILE 2022-12-15T13:08:22,468 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,469 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,469 ^~~~~~~~~~~ 2022-12-15T13:08:22,470 P7_PROFILE 2022-12-15T13:08:22,470 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,471 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,476 ^~~~~~~~~~~ 2022-12-15T13:08:22,477 P7_PROFILE 2022-12-15T13:08:22,477 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,478 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,479 ^~~~~~~~~~~ 2022-12-15T13:08:22,479 P7_PROFILE 2022-12-15T13:08:22,480 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,480 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,481 ^~~~~~~~~~~ 2022-12-15T13:08:22,482 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,482 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,483 ^~~~~~~~~~~ 2022-12-15T13:08:22,489 P7_PROFILE 2022-12-15T13:08:22,493 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,495 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,496 ^~~~~~~~~~~ 2022-12-15T13:08:22,496 P7_PROFILE 2022-12-15T13:08:22,497 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,498 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,498 ^~~~~~~~~~~ 2022-12-15T13:08:22,499 P7_PROFILE 2022-12-15T13:08:22,499 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,500 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,500 ^~~~~~ 2022-12-15T13:08:22,501 P7_GMX 2022-12-15T13:08:22,501 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,502 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,502 ^~~~~~ 2022-12-15T13:08:22,507 P7_GMX 2022-12-15T13:08:22,519 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,520 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,520 ^~~~~~ 2022-12-15T13:08:22,521 P7_GMX 2022-12-15T13:08:22,521 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,522 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,522 ^~~~~~ 2022-12-15T13:08:22,523 P7_GMX 2022-12-15T13:08:22,524 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,524 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,526 ^~~~~~~~~~~ 2022-12-15T13:08:22,526 P7_PROFILE 2022-12-15T13:08:22,527 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,527 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,527 ^~~~~~~~~~~ 2022-12-15T13:08:22,528 P7_PROFILE 2022-12-15T13:08:22,528 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,529 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,529 ^~~~~~~~~~~ 2022-12-15T13:08:22,530 P7_PROFILE 2022-12-15T13:08:22,531 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,532 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,533 ^~~~~~~~~~~ 2022-12-15T13:08:22,533 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,534 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,535 ^~~~~~~~~~~ 2022-12-15T13:08:22,535 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,536 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,537 ^~~~~~~~~~~ 2022-12-15T13:08:22,537 P7_PROFILE 2022-12-15T13:08:22,538 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,539 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,539 ^~~~~~~~~~~ 2022-12-15T13:08:22,540 P7_PROFILE 2022-12-15T13:08:22,541 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-15T13:08:22,542 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:22,542 #error "No vector implementation enabled" 2022-12-15T13:08:22,543 ^~~~~ 2022-12-15T13:08:22,544 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,544 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:22,544 ^~~~~~ 2022-12-15T13:08:22,545 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,545 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:22,545 ^~~~~~ 2022-12-15T13:08:22,546 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,546 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:22,546 ^~~~~~ 2022-12-15T13:08:22,547 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,548 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,548 ^~~~~~~~~~~ 2022-12-15T13:08:22,549 P7_PROFILE 2022-12-15T13:08:22,550 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,550 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:22,551 ^~~~~~ 2022-12-15T13:08:22,551 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-15T13:08:22,552 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,552 P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-15T13:08:22,553 ^~~~~~~~~~~ 2022-12-15T13:08:22,553 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-15T13:08:22,554 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,554 P7_OPROFILE *om = NULL; /* target profile */ 2022-12-15T13:08:22,555 ^~~~~~~~~~~ 2022-12-15T13:08:22,556 P7_PROFILE 2022-12-15T13:08:22,556 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,556 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:22,557 ^~~~~~~~~~~ 2022-12-15T13:08:22,557 P7_PROFILE 2022-12-15T13:08:22,558 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,558 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,559 ^~~~~~~~~~~ 2022-12-15T13:08:22,559 P7_PROFILE 2022-12-15T13:08:22,560 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-15T13:08:22,561 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,562 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:08:22,562 ^~~~~~~~~~~ 2022-12-15T13:08:22,564 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:08:22,564 if ( size <= 0 ) { \ 2022-12-15T13:08:22,565 ^~~~ 2022-12-15T13:08:22,565 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-15T13:08:22,566 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:08:22,567 ^~~~~~~~~~~ 2022-12-15T13:08:22,568 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:08:22,568 if ( size <= 0 ) { \ 2022-12-15T13:08:22,569 ^~~~ 2022-12-15T13:08:22,569 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:08:22,570 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:08:22,571 ^ 2022-12-15T13:08:22,572 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:08:22,573 if ( size <= 0 ) { \ 2022-12-15T13:08:22,573 ^~~~ 2022-12-15T13:08:22,574 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:08:22,575 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:08:22,576 ^ 2022-12-15T13:08:22,576 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:08:22,577 if ( ((p) = malloc(size)) == NULL) { \ 2022-12-15T13:08:22,578 ^~~~ 2022-12-15T13:08:22,578 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:08:22,579 ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:08:22,580 ^ 2022-12-15T13:08:22,580 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:08:22,581 esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-15T13:08:22,581 ^~~~ 2022-12-15T13:08:22,583 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,584 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,585 ^~~~~~~~~~~ 2022-12-15T13:08:22,585 P7_PROFILE 2022-12-15T13:08:22,586 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,587 while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-15T13:08:22,587 ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,588 p7_profile_Reuse 2022-12-15T13:08:22,589 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,589 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,590 ^~~~~~~~~~~ 2022-12-15T13:08:22,590 P7_PROFILE 2022-12-15T13:08:22,591 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,591 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,592 ^~~~~~~~~~~ 2022-12-15T13:08:22,592 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,593 if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-15T13:08:22,593 ^~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,594 p7_profile_Reuse 2022-12-15T13:08:22,595 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,595 if (om) p7_oprofile_Destroy(om); 2022-12-15T13:08:22,596 ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,596 p7_profile_Destroy 2022-12-15T13:08:22,597 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,597 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,598 ^~~~~~~~~~~ 2022-12-15T13:08:22,599 P7_PROFILE 2022-12-15T13:08:22,599 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-15T13:08:22,600 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,600 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-15T13:08:22,601 ^~~~~~~~~~~ 2022-12-15T13:08:22,601 P7_PROFILE 2022-12-15T13:08:22,602 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-15T13:08:22,603 n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-15T13:08:22,604 ^ 2022-12-15T13:08:22,604 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:22,605 for (i = 0; i < cache->n; i++) 2022-12-15T13:08:22,605 ^ 2022-12-15T13:08:22,606 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,606 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,607 ^~~~~~~~~~~ 2022-12-15T13:08:22,607 P7_PROFILE 2022-12-15T13:08:22,608 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-15T13:08:22,608 n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-15T13:08:22,609 ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:08:22,609 p7_profile_Sizeof 2022-12-15T13:08:22,610 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,611 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,611 ^~~~~~~~~~~ 2022-12-15T13:08:22,612 P7_PROFILE 2022-12-15T13:08:22,612 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-15T13:08:22,613 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,613 P7_OPROFILE *om; 2022-12-15T13:08:22,614 ^~~~~~~~~~~ 2022-12-15T13:08:22,614 P7_PROFILE 2022-12-15T13:08:22,615 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:22,615 for (i = 0; i < cache->n; i++) 2022-12-15T13:08:22,616 ^ 2022-12-15T13:08:22,616 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,617 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,617 ^~~~~~ 2022-12-15T13:08:22,618 P7_GMX 2022-12-15T13:08:22,618 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:08:22,619 if (om->name) free(om->name); 2022-12-15T13:08:22,619 ^~ 2022-12-15T13:08:22,619 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:08:22,620 if (om->name) free(om->name); 2022-12-15T13:08:22,638 ^~ 2022-12-15T13:08:22,638 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:08:22,639 if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-15T13:08:22,639 ^~ 2022-12-15T13:08:22,640 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-15T13:08:22,640 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:22,641 for (i = 0; i < cache->n; i++) 2022-12-15T13:08:22,641 ^ 2022-12-15T13:08:22,642 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,642 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,643 ^~~~~~ 2022-12-15T13:08:22,644 P7_GMX 2022-12-15T13:08:22,644 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,645 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,645 ^~~~~~ 2022-12-15T13:08:22,646 P7_GMX 2022-12-15T13:08:22,646 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,647 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,647 ^~~~~~ 2022-12-15T13:08:22,648 P7_GMX 2022-12-15T13:08:22,648 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,649 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,650 ^~~~~~~~~~~ 2022-12-15T13:08:22,651 P7_PROFILE 2022-12-15T13:08:22,652 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,653 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,671 ^~~~~~~~~~~ 2022-12-15T13:08:22,671 P7_PROFILE 2022-12-15T13:08:22,672 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,672 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,673 ^~~~~~~~~~~ 2022-12-15T13:08:22,673 P7_PROFILE 2022-12-15T13:08:22,674 generating build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-15T13:08:22,674 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,675 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,675 ^~~~~~~~~~~ 2022-12-15T13:08:22,676 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,676 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,677 ^~~~~~~~~~~ 2022-12-15T13:08:22,677 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -flto -fuse-linker-plugin -ffat-lto-objects -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-37 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-37/vendor/hmmer/src/fm_general.o 2022-12-15T13:08:22,677 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,678 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,678 ^~~~~~~~~~~ 2022-12-15T13:08:22,679 P7_PROFILE 2022-12-15T13:08:22,679 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,679 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,680 ^~~~~~~~~~~ 2022-12-15T13:08:22,680 P7_PROFILE 2022-12-15T13:08:22,680 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,681 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,681 ^~~~~~~~~~~ 2022-12-15T13:08:22,682 P7_PROFILE 2022-12-15T13:08:22,821 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-15T13:08:22,822 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:22,822 #error "No vector implementation enabled" 2022-12-15T13:08:22,823 ^~~~~ 2022-12-15T13:08:22,826 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,826 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:22,827 ^~~~~~ 2022-12-15T13:08:22,828 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,828 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:22,828 ^~~~~~ 2022-12-15T13:08:22,829 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,830 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:22,830 ^~~~~~ 2022-12-15T13:08:22,831 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,831 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:22,832 ^~~~~~ 2022-12-15T13:08:22,833 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,833 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:22,834 ^~~~~~~~~~~ 2022-12-15T13:08:22,835 P7_PROFILE 2022-12-15T13:08:22,837 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,838 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,838 ^~~~~~~~~~~ 2022-12-15T13:08:22,839 P7_PROFILE 2022-12-15T13:08:22,840 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,841 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,841 ^~~~~~~~~~~ 2022-12-15T13:08:22,842 P7_PROFILE 2022-12-15T13:08:22,843 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,843 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,844 ^~~~~~~~~~~ 2022-12-15T13:08:22,844 P7_PROFILE 2022-12-15T13:08:22,847 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,847 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,848 ^~~~~~~~~~~ 2022-12-15T13:08:22,852 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-15T13:08:22,852 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:22,853 #error "No vector implementation enabled" 2022-12-15T13:08:22,854 ^~~~~ 2022-12-15T13:08:22,854 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,855 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,856 ^~~~~~~~~~~ 2022-12-15T13:08:22,856 P7_PROFILE 2022-12-15T13:08:22,857 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,857 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:22,858 ^~~~~~ 2022-12-15T13:08:22,859 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,860 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:22,861 ^~~~~~ 2022-12-15T13:08:22,861 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,862 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:22,863 ^~~~~~ 2022-12-15T13:08:22,864 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:22,865 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:22,865 ^~~~~~ 2022-12-15T13:08:22,866 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,867 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,867 ^~~~~~~~~~~ 2022-12-15T13:08:22,868 P7_PROFILE 2022-12-15T13:08:22,869 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,870 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,871 ^~~~~~~~~~~ 2022-12-15T13:08:22,871 P7_PROFILE 2022-12-15T13:08:22,872 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,873 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:22,873 ^~~~~~~~~~~ 2022-12-15T13:08:22,874 P7_PROFILE 2022-12-15T13:08:22,874 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,875 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,875 ^~~~~~ 2022-12-15T13:08:22,875 P7_GMX 2022-12-15T13:08:22,876 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,876 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:22,876 ^~~~~~~~~~~ 2022-12-15T13:08:22,877 P7_PROFILE 2022-12-15T13:08:22,877 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,878 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,879 ^~~~~~ 2022-12-15T13:08:22,879 P7_GMX 2022-12-15T13:08:22,880 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,880 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:22,881 ^~~~~~~~~~~ 2022-12-15T13:08:22,882 P7_PROFILE 2022-12-15T13:08:22,883 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,884 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,884 ^~~~~~ 2022-12-15T13:08:22,885 P7_GMX 2022-12-15T13:08:22,886 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,886 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:22,887 ^~~~~~~~~~~ 2022-12-15T13:08:22,888 P7_PROFILE 2022-12-15T13:08:22,888 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,889 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,889 ^~~~~~ 2022-12-15T13:08:22,890 P7_GMX 2022-12-15T13:08:22,891 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,892 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:22,892 ^~~~~~~~~~~ 2022-12-15T13:08:22,893 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,894 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,895 ^~~~~~~~~~~ 2022-12-15T13:08:22,896 P7_PROFILE 2022-12-15T13:08:22,896 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,897 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:22,897 ^~~~~~~~~~~ 2022-12-15T13:08:22,898 P7_PROFILE 2022-12-15T13:08:22,899 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,899 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,900 ^~~~~~~~~~~ 2022-12-15T13:08:22,900 P7_PROFILE 2022-12-15T13:08:22,901 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,901 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:22,902 ^~~~~~~~~~~ 2022-12-15T13:08:22,902 P7_PROFILE 2022-12-15T13:08:22,903 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,904 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,905 ^~~~~~~~~~~ 2022-12-15T13:08:22,905 P7_PROFILE 2022-12-15T13:08:22,905 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,906 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,906 ^~~~~~~~~~~ 2022-12-15T13:08:22,907 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,908 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,908 ^~~~~~~~~~~ 2022-12-15T13:08:22,909 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,909 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,910 ^~~~~~~~~~~ 2022-12-15T13:08:22,910 P7_PROFILE 2022-12-15T13:08:22,911 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,912 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,912 ^~~~~~~~~~~ 2022-12-15T13:08:22,913 P7_PROFILE 2022-12-15T13:08:22,914 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,914 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,914 ^~~~~~ 2022-12-15T13:08:22,915 P7_GMX 2022-12-15T13:08:22,916 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,916 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,917 ^~~~~~~~~~~ 2022-12-15T13:08:22,917 P7_PROFILE 2022-12-15T13:08:22,918 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,918 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,919 ^~~~~~ 2022-12-15T13:08:22,919 P7_GMX 2022-12-15T13:08:22,920 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,921 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,922 ^~~~~~ 2022-12-15T13:08:22,923 P7_GMX 2022-12-15T13:08:22,924 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:22,924 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:22,925 ^~~~~~ 2022-12-15T13:08:22,925 P7_GMX 2022-12-15T13:08:22,926 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,926 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,927 ^~~~~~~~~~~ 2022-12-15T13:08:22,928 P7_PROFILE 2022-12-15T13:08:22,928 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,928 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:22,929 ^~~~~~~~~~~ 2022-12-15T13:08:22,929 P7_PROFILE 2022-12-15T13:08:22,930 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,930 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:22,931 ^~~~~~~~~~~ 2022-12-15T13:08:22,932 P7_PROFILE 2022-12-15T13:08:22,933 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,933 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:22,934 ^~~~~~~~~~~ 2022-12-15T13:08:22,934 P7_PROFILE 2022-12-15T13:08:22,935 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,935 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:22,936 ^~~~~~~~~~~ 2022-12-15T13:08:22,936 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:22,937 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:22,937 ^~~~~~~~~~~ 2022-12-15T13:08:22,938 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,938 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:22,939 ^~~~~~~~~~~ 2022-12-15T13:08:22,939 P7_PROFILE 2022-12-15T13:08:22,939 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,940 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:22,940 ^~~~~~~~~~~ 2022-12-15T13:08:22,941 P7_PROFILE 2022-12-15T13:08:22,942 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:22,943 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:22,944 ^~~~~~~~~~~ 2022-12-15T13:08:22,945 P7_PROFILE 2022-12-15T13:08:23,035 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-15T13:08:23,036 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:08:23,036 #error "No vector implementation enabled" 2022-12-15T13:08:23,036 ^~~~~ 2022-12-15T13:08:23,037 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:23,038 P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:08:23,038 ^~~~~~ 2022-12-15T13:08:23,039 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:23,039 P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:08:23,040 ^~~~~~ 2022-12-15T13:08:23,040 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:23,041 P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:08:23,042 ^~~~~~ 2022-12-15T13:08:23,043 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:08:23,044 P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:08:23,044 ^~~~~~ 2022-12-15T13:08:23,045 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,046 extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:08:23,046 ^~~~~~~~~~~ 2022-12-15T13:08:23,047 P7_PROFILE 2022-12-15T13:08:23,047 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,048 extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:08:23,049 ^~~~~~~~~~~ 2022-12-15T13:08:23,049 P7_PROFILE 2022-12-15T13:08:23,051 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,052 extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:08:23,052 ^~~~~~~~~~~ 2022-12-15T13:08:23,053 P7_PROFILE 2022-12-15T13:08:23,054 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,055 extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:08:23,055 ^~~~~~~~~~~ 2022-12-15T13:08:23,055 P7_PROFILE 2022-12-15T13:08:23,058 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:23,058 extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:08:23,059 ^~~~~~~~~~~ 2022-12-15T13:08:23,063 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,064 extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:08:23,064 ^~~~~~~~~~~ 2022-12-15T13:08:23,065 P7_PROFILE 2022-12-15T13:08:23,066 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,066 extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:08:23,067 ^~~~~~~~~~~ 2022-12-15T13:08:23,068 P7_PROFILE 2022-12-15T13:08:23,070 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,070 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:23,071 ^~~~~~~~~~~ 2022-12-15T13:08:23,071 P7_PROFILE 2022-12-15T13:08:23,073 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:23,074 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:23,074 ^~~~~~ 2022-12-15T13:08:23,075 P7_GMX 2022-12-15T13:08:23,076 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:23,077 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:23,077 ^~~~~~ 2022-12-15T13:08:23,078 P7_GMX 2022-12-15T13:08:23,079 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:23,080 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:23,080 ^~~~~~ 2022-12-15T13:08:23,081 P7_GMX 2022-12-15T13:08:23,082 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:08:23,083 extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:08:23,083 ^~~~~~ 2022-12-15T13:08:23,083 P7_GMX 2022-12-15T13:08:23,087 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,088 extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:08:23,089 ^~~~~~~~~~~ 2022-12-15T13:08:23,089 P7_PROFILE 2022-12-15T13:08:23,091 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,091 extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:08:23,092 ^~~~~~~~~~~ 2022-12-15T13:08:23,092 P7_PROFILE 2022-12-15T13:08:23,094 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,095 extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:08:23,095 ^~~~~~~~~~~ 2022-12-15T13:08:23,096 P7_PROFILE 2022-12-15T13:08:23,097 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:23,097 extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:08:23,097 ^~~~~~~~~~~ 2022-12-15T13:08:23,098 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:08:23,098 extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:08:23,099 ^~~~~~~~~~~ 2022-12-15T13:08:23,100 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,100 extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:08:23,101 ^~~~~~~~~~~ 2022-12-15T13:08:23,101 P7_PROFILE 2022-12-15T13:08:23,101 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,102 extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:08:23,102 ^~~~~~~~~~~ 2022-12-15T13:08:23,103 P7_PROFILE 2022-12-15T13:08:23,109 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:08:23,109 extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:08:23,110 ^~~~~~~~~~~ 2022-12-15T13:08:23,110 P7_PROFILE 2022-12-15T13:08:23,119 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-15T13:08:23,120 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,120 if (ranges[lo].lower > end) return -1; 2022-12-15T13:08:23,121 ^ 2022-12-15T13:08:23,121 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,122 if (ranges[hi].upper < start) return -1; 2022-12-15T13:08:23,122 ^ 2022-12-15T13:08:23,123 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,123 if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-15T13:08:23,124 ^ 2022-12-15T13:08:23,124 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,125 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-15T13:08:23,125 ^~ 2022-12-15T13:08:23,125 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,126 if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-15T13:08:23,126 ^~ 2022-12-15T13:08:23,126 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,127 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-15T13:08:23,127 ^~ 2022-12-15T13:08:23,128 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,128 else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-15T13:08:23,128 ^~ 2022-12-15T13:08:23,129 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-15T13:08:23,129 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-15T13:08:23,130 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-15T13:08:23,130 ^~ 2022-12-15T13:08:23,130 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,131 while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-15T13:08:23,131 ^~ 2022-12-15T13:08:23,131 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-15T13:08:23,132 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,132 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:08:23,132 ^ 2022-12-15T13:08:23,133 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:08:23,133 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-15T13:08:23,134 ^~~~~~~ 2022-12-15T13:08:23,134 vendor/easel/easel.h:417:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:08:23,134 #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:08:23,135 ^~~ 2022-12-15T13:08:23,135 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:08:23,135 int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-15T13:08:23,136 ^~~~~~~ 2022-12-15T13:08:23,136 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,136 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:08:23,137 ^ 2022-12-15T13:08:23,137 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:08:23,137 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-15T13:08:23,138 ^~~~~~~ 2022-12-15T13:08:23,138 vendor/easel/easel.h:416:46: warning: operand of ?: changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:08:23,138 #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:08:23,139 ^~~ 2022-12-15T13:08:23,139 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:08:23,139 int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-15T13:08:23,140 ^~~~~~~ 2022-12-15T13:08:23,140 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,140 for (j= start; j<=end; j++) 2022-12-15T13:08:23,141 ^~ 2022-12-15T13:08:23,141 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-15T13:08:23,141 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-15T13:08:23,142 (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-15T13:08:23,142 ^~ 2022-12-15T13:08:23,142 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-15T13:08:23,143 (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-15T13:08:23,143 ^~ 2022-12-15T13:08:23,144 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-15T13:08:23,145 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,145 for (i=0; iseq_count; i++) { 2022-12-15T13:08:23,146 ^ 2022-12-15T13:08:23,150 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,150 fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-15T13:08:23,151 ^~ 2022-12-15T13:08:23,151 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,151 fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-15T13:08:23,152 ^~ 2022-12-15T13:08:23,152 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,152 fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-15T13:08:23,153 ^~ 2022-12-15T13:08:23,153 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:08:23,154 fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-15T13:08:23,154 ^~ 2022-12-15T13:08:23,154 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,155 for (i=0; iambig_list->count; i++) { 2022-12-15T13:08:23,155 ^ 2022-12-15T13:08:23,155 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,156 for (i=0; iseq_count; i++) 2022-12-15T13:08:23,156 ^ 2022-12-15T13:08:23,157 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-15T13:08:23,158 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:08:23,158 for (i=0; iseq_count; i++) { 2022-12-15T13:08:23,158 ^ 2022-12-15T13:08:23,233 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-15T13:08:23,234 !! 2022-12-15T13:08:23,235 ############################ 2022-12-15T13:08:23,235 # Package would be ignored # 2022-12-15T13:08:23,236 ############################ 2022-12-15T13:08:23,236 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-15T13:08:23,236 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:08:23,237 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-15T13:08:23,237 because it may contain data files, but this behavior is likely to change 2022-12-15T13:08:23,237 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:08:23,238 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-15T13:08:23,238 the `packages` configuration field or the proper discovery methods 2022-12-15T13:08:23,239 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:08:23,239 instead of `find_packages(...)`/`find:`). 2022-12-15T13:08:23,240 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:08:23,240 documentation page. 2022-12-15T13:08:23,241 !! 2022-12-15T13:08:23,241 check.warn(importable) 2022-12-15T13:08:23,242 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-15T13:08:23,242 !! 2022-12-15T13:08:23,243 ############################ 2022-12-15T13:08:23,243 # Package would be ignored # 2022-12-15T13:08:23,244 ############################ 2022-12-15T13:08:23,244 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-15T13:08:23,244 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:08:23,245 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-15T13:08:23,245 because it may contain data files, but this behavior is likely to change 2022-12-15T13:08:23,245 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:08:23,246 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-15T13:08:23,246 the `packages` configuration field or the proper discovery methods 2022-12-15T13:08:23,247 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:08:23,247 instead of `find_packages(...)`/`find:`). 2022-12-15T13:08:23,248 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:08:23,248 documentation page. 2022-12-15T13:08:23,249 !! 2022-12-15T13:08:23,249 check.warn(importable) 2022-12-15T13:08:23,250 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-15T13:08:23,250 !! 2022-12-15T13:08:23,251 ############################ 2022-12-15T13:08:23,252 # Package would be ignored # 2022-12-15T13:08:23,252 ############################ 2022-12-15T13:08:23,253 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-15T13:08:23,253 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:08:23,254 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-15T13:08:23,255 because it may contain data files, but this behavior is likely to change 2022-12-15T13:08:23,255 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:08:23,256 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-15T13:08:23,256 the `packages` configuration field or the proper discovery methods 2022-12-15T13:08:23,257 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:08:23,257 instead of `find_packages(...)`/`find:`). 2022-12-15T13:08:23,258 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:08:23,258 documentation page. 2022-12-15T13:08:23,260 !! 2022-12-15T13:08:23,261 check.warn(importable) 2022-12-15T13:08:23,261 /tmp/pip-build-env-gqe_6y0l/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-15T13:08:23,261 !! 2022-12-15T13:08:23,263 ############################ 2022-12-15T13:08:23,263 # Package would be ignored # 2022-12-15T13:08:23,263 ############################ 2022-12-15T13:08:23,264 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-15T13:08:23,264 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:08:23,265 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-15T13:08:23,266 because it may contain data files, but this behavior is likely to change 2022-12-15T13:08:23,266 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:08:23,267 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-15T13:08:23,267 the `packages` configuration field or the proper discovery methods 2022-12-15T13:08:23,268 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:08:23,268 instead of `find_packages(...)`/`find:`). 2022-12-15T13:08:23,269 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:08:23,270 documentation page. 2022-12-15T13:08:23,271 !! 2022-12-15T13:08:23,272 check.warn(importable) 2022-12-15T13:08:23,272 checking whether can be included... yes 2022-12-15T13:08:23,272 checking whether can be included... yes 2022-12-15T13:08:23,273 checking whether can be included... yes 2022-12-15T13:08:23,274 checking whether can be included... yes 2022-12-15T13:08:23,274 checking whether can be included... yes 2022-12-15T13:08:23,274 checking whether can be included... yes 2022-12-15T13:08:23,275 checking whether can be included... yes 2022-12-15T13:08:23,275 checking whether can be included... yes 2022-12-15T13:08:23,276 checking whether can be included... yes 2022-12-15T13:08:23,276 checking whether can be included... yes 2022-12-15T13:08:23,277 checking whether can be included... yes 2022-12-15T13:08:23,277 checking whether can be included... yes 2022-12-15T13:08:23,277 checking whether can be included... yes 2022-12-15T13:08:23,278 checking whether function 'aligned_alloc' is available... yes 2022-12-15T13:08:23,278 checking whether function 'erfc' is available... yes 2022-12-15T13:08:23,278 checking whether function 'getpid' is available... yes 2022-12-15T13:08:23,279 checking whether function '_mm_malloc' is available... no 2022-12-15T13:08:23,279 checking whether function 'popen' is available... yes 2022-12-15T13:08:23,280 checking whether function 'posix_memalign' is available... yes 2022-12-15T13:08:23,280 checking whether function 'strcasecmp' is available... yes 2022-12-15T13:08:23,280 checking whether function 'strsep' is available... yes 2022-12-15T13:08:23,281 checking whether function 'sysconf' is available... yes 2022-12-15T13:08:23,281 checking whether function 'sysctl' is available... yes 2022-12-15T13:08:23,282 checking whether function 'times' is available... yes 2022-12-15T13:08:23,282 checking whether function 'fseeko' is available... yes 2022-12-15T13:08:23,283 checking whether can be included... yes 2022-12-15T13:08:23,283 checking whether can be included... yes 2022-12-15T13:08:23,284 checking whether can be included... yes 2022-12-15T13:08:23,284 checking whether can be included... yes 2022-12-15T13:08:23,285 checking whether can be included... yes 2022-12-15T13:08:23,285 checking whether can be included... yes 2022-12-15T13:08:23,286 checking whether can be included... yes 2022-12-15T13:08:23,286 checking whether can be included... yes 2022-12-15T13:08:23,286 checking whether function 'mkstemp' is available... yes 2022-12-15T13:08:23,287 checking whether function 'popen' is available... yes 2022-12-15T13:08:23,287 checking whether function 'putenv' is available... yes 2022-12-15T13:08:23,288 checking whether function 'strcasecmp' is available... yes 2022-12-15T13:08:23,288 checking whether function 'strsep' is available... yes 2022-12-15T13:08:23,289 checking whether function 'times' is available... yes 2022-12-15T13:08:23,290 checking whether function 'getpid' is available... yes 2022-12-15T13:08:23,290 checking whether function 'sysctl' is available... yes 2022-12-15T13:08:23,290 checking whether function 'sysconf' is available... yes 2022-12-15T13:08:23,291 checking whether function 'getcwd' is available... yes 2022-12-15T13:08:23,291 checking whether function 'chmod' is available... yes 2022-12-15T13:08:23,292 checking whether function 'stat' is available... yes 2022-12-15T13:08:23,292 checking whether function 'fstat' is available... yes 2022-12-15T13:08:23,292 checking whether function 'erfc' is available... yes 2022-12-15T13:08:23,293 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-15T13:08:23,505 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-15T13:08:23,556 [bold magenta]full command[/]: [blue]/usr/bin/python3 /home/piwheels/.local/lib/python3.7/site-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpmt54fqi4[/] 2022-12-15T13:08:23,556 [bold magenta]cwd[/]: /tmp/pip-wheel-nwau3nk2/pyhmmer_3c05a29eadc34c6db98dc97f2a7e10f2 2022-12-15T13:08:23,557 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-15T13:08:23,562 ERROR: Failed building wheel for pyhmmer 2022-12-15T13:08:23,568 Failed to build pyhmmer 2022-12-15T13:08:23,570 ERROR: Failed to build one or more wheels 2022-12-15T13:08:23,573 Exception information: 2022-12-15T13:08:23,573 Traceback (most recent call last): 2022-12-15T13:08:23,573 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-15T13:08:23,573 status = run_func(*args) 2022-12-15T13:08:23,573 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-15T13:08:23,573 return func(self, options, args) 2022-12-15T13:08:23,573 File "/home/piwheels/.local/lib/python3.7/site-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-15T13:08:23,573 raise CommandError("Failed to build one or more wheels") 2022-12-15T13:08:23,573 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-15T13:08:23,582 Removed build tracker: '/tmp/pip-build-tracker-p5xfg_dd'