2022-12-15T13:20:05,120 Created temporary directory: /tmp/pip-ephem-wheel-cache-x785pvjd 2022-12-15T13:20:05,122 Created temporary directory: /tmp/pip-build-tracker-mwx5z66h 2022-12-15T13:20:05,122 Initialized build tracking at /tmp/pip-build-tracker-mwx5z66h 2022-12-15T13:20:05,123 Created build tracker: /tmp/pip-build-tracker-mwx5z66h 2022-12-15T13:20:05,123 Entered build tracker: /tmp/pip-build-tracker-mwx5z66h 2022-12-15T13:20:05,123 Created temporary directory: /tmp/pip-wheel-krl3vv2a 2022-12-15T13:20:05,126 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:20:05,129 Created temporary directory: /tmp/pip-ephem-wheel-cache-7kg2u2zi 2022-12-15T13:20:05,156 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:20:05,159 2 location(s) to search for versions of pyhmmer: 2022-12-15T13:20:05,159 * https://pypi.org/simple/pyhmmer/ 2022-12-15T13:20:05,159 * https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:20:05,160 Fetching project page and analyzing links: https://pypi.org/simple/pyhmmer/ 2022-12-15T13:20:05,160 Getting page https://pypi.org/simple/pyhmmer/ 2022-12-15T13:20:05,162 Found index url https://pypi.org/simple 2022-12-15T13:20:05,227 Fetched page https://pypi.org/simple/pyhmmer/ as application/vnd.pypi.simple.v1+json 2022-12-15T13:20:05,322 Skipping link: No binaries permitted for pyhmmer: 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https://pypi.org/simple/pyhmmer/) 2022-12-15T13:20:05,325 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/92/21/bb677b42abb107adf96a8e305659779332f1faece8c3c8b8227d6c447714/pyhmmer-0.1.0a1-pp36-pypy3_72-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) 2022-12-15T13:20:05,325 Found link https://files.pythonhosted.org/packages/9d/52/5dfdc7b0b49d72f6975c789255f785fb5adaed4d316dea2c1fd5752e3671/pyhmmer-0.1.0a1.tar.gz (from https://pypi.org/simple/pyhmmer/), version: 0.1.0a1 2022-12-15T13:20:05,325 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/5a/94c8ad40e16bd1b238703a8815bd68d90b0559ac8cbaa7a027d2a886978b/pyhmmer-0.1.0a2-cp35-cp35m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:20:05,325 Skipping link: No binaries permitted for pyhmmer: 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link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5d/05/76e3a2a9e1a8d8f2cc41a56712b6f44d518d44e697d8cf4dd501540233bb/pyhmmer-0.1.0a3-cp36-cp36m-manylinux1_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:20:05,329 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e6/0a/6f7079e3579f2729c0bd8d504f321336e981bb7e6d39cd17ec3077a5fff4/pyhmmer-0.1.0a3-cp36-cp36m-manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:20:05,329 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/82/43/7dd16f4ba5889baf5948f420bfb0333b10f00b247b7dc346eb1f564951e9/pyhmmer-0.1.0a3-cp37-cp37m-macosx_10_11_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.5) 2022-12-15T13:20:05,330 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/4f/77/3499166ca2e4ca1b8736bebd9082787c5bb88478c98fe14970e88cdecf07/pyhmmer-0.4.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.3 2022-12-15T13:20:05,378 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/6a/9b/b6aa00ca89a0f7a238d2f23a241416e7051d7ba24fe7505d1ec33c7a21e5/pyhmmer-0.4.4-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,378 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e0/6c/20245a7c295a2eca32fe7db3dec34c0c581c6c2ed0ce926cafe318eb2259/pyhmmer-0.4.4-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,379 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bd/5f/6e0db077ed2e1073b9fe7c4b18df5774bb86c2aa27f191713cd3f3aab53c/pyhmmer-0.4.6.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.6 2022-12-15T13:20:05,387 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/26/20/dc39dffff630017b87930177ac6c5e7d8621d57feca523d60c631609cb49/pyhmmer-0.4.7-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,387 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fa/f4/eccba2715b5b099cee52cddda59b3e5f8344071045f7c0c4567d3a3e32d7/pyhmmer-0.4.7-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,388 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/dc/c9/cf8188802659d5a599e884c8f9329498069ed3eb8bbe8f9de0152f825dac/pyhmmer-0.4.9-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,395 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/c5/ab/362d371895cdd48c56963d052e8540b1d1c2261bf7dcd0acced3c6f1b10e/pyhmmer-0.4.9-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,395 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d7/44/e509d304b066af1563b6fd16c3535edd2c556f2f2ae9d8d3a00b85a7550b/pyhmmer-0.4.9-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,396 Found link https://files.pythonhosted.org/packages/8b/25/0adc73af00203eb49a7254b26129b5c0cfd6acbe398f18dbdab67b24c638/pyhmmer-0.4.9.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.9 2022-12-15T13:20:05,396 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/b7/6b/41a4a5002c8f5b4ad25080ea07631927aee72b11b316652528f856281f9d/pyhmmer-0.4.10-cp36-cp36m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,396 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/68/b0/e5f3122d4d7a7e8688f726e8ed313982cac77c095554f1cce97ee5fba6d8/pyhmmer-0.4.10-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,397 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/cd/6e/9ab04139587efaeeceefb0a5e10178b14c61abdf67a854fc0430b6c8af80/pyhmmer-0.4.10-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,397 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/0d/63/e4a944ac648642739f5dd85127803e47939202e025e0a9ca9fccc100eba1/pyhmmer-0.4.10-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,398 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/b8/b5c116cef579c924383e595072bfea9c24a894ef916eaecb139cf3e274dc/pyhmmer-0.4.10-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,398 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/33/90/566f66a4ca8bbba8d364b5d123399c5ca76ea8050d829a397d65eabaf3ed/pyhmmer-0.4.10-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,398 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9d/46/ae84e7ae14e9b3e8026b796471844959fbb6f4043c1af329dee1e9f702c5/pyhmmer-0.4.10-pp37-pypy37_pp73-macosx_10_7_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,398 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f1/6d/ef6e6e92eb4925da759c64c881ff811f5ea4073b826b2466fe08a4ef1698/pyhmmer-0.4.10-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,399 Found link https://files.pythonhosted.org/packages/41/d9/e68b956d0a82e66223ad23fd46e15bcfe535809fe2c7fe38dc4f324c066c/pyhmmer-0.4.10.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.4.10 2022-12-15T13:20:05,399 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/70/75/a01b9274d74aa22fb3d4e4df3677f9e0fd8d6d96aac7918af9e532feabb9/pyhmmer-0.4.11-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,399 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/4a/fc/4919fc4e0f15c48c060ef04908af7e4576aff4a5aef06a7fe8876496716e/pyhmmer-0.4.11-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,399 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/d1/ab/7448d935505b12a4a865f273b51c5e6a63ebacc6d3e98acb23b2133c1c8c/pyhmmer-0.5.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,405 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/fb/15/f3b826ba98bfbc9386e628d9b6fa5237a0e761274a1e84a6e1042fa55784/pyhmmer-0.5.0-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,405 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/66/e6/77a0ac512c431181dcb2ea9d41912a09518dd4514689bcf035a31576e479/pyhmmer-0.5.0-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,405 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/bb/a1/103087f3aba399a852295b2865a66357570a2c0a5c1c98ae1cce916ab468/pyhmmer-0.6.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,415 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d6/e1/4d9ff4eeaef082868cd75110599e2b123191d2d28570b52f837c7b4e8c31/pyhmmer-0.6.2-pp36-pypy36_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,416 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/7c/ae/0b5f48c0b450b59edc60b80673c1c1d3a476fd0e1a67227c98bc24f5e119/pyhmmer-0.6.2-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,416 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/42/f72235b8fff6279f6f597c4766b42e5bf4d5f99b8952aad09262c191cb0d/pyhmmer-0.6.2-pp37-pypy37_pp73-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_12_x86_64.manylinux2010_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,416 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/e8/42/0642f761e61259b3c5263fe33ff1b94fa5db04f416c2bde2b620daca9b59/pyhmmer-0.6.2-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,416 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/41/b8/cc677cadee7a7014e6700c87d8ff24d33d9118b6d1564b6b2660ddb7ca17/pyhmmer-0.6.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,417 Found link https://files.pythonhosted.org/packages/26/6a/f2618f79593b64a409dba66026d7fc921ae8837726f0085da1707239a8e4/pyhmmer-0.6.2.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.2 2022-12-15T13:20:05,417 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/53/70ce5950fa95a9f6c4c296f2d08ce0de8b78d66054f35746c9e38e5a7287/pyhmmer-0.6.3-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,417 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/47/80/ca9f919c80b20030c3f65ef28bfa53c95453b69e7a24ac429964df65c7d0/pyhmmer-0.6.3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,417 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/63/f7/a794532449c381535fbf2955c1707bc89a823d7454658df2ac13eb83d6d1/pyhmmer-0.6.3-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,420 Found link https://files.pythonhosted.org/packages/97/96/56a83e026412eb4714f313c444393453ef203e4ca1189de2c9907a9654f2/pyhmmer-0.6.3.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.6.3 2022-12-15T13:20:05,421 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/a7/01/2646aeb1261cb03ab15fbfb6bc902ea896e75f25e5ed38ac45be33375696/pyhmmer-0.7.0rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,421 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/1e/d8/f7b849eb87315778cc9a4295372bb3c5680616558edd48b4cb48a2cc1eb4/pyhmmer-0.7.0-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,440 Found link https://files.pythonhosted.org/packages/b4/aa/5f50a6780689a7372c851c8474fd5487b65d3df53f2a434bc5a99bc01cee/pyhmmer-0.7.0.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.0 2022-12-15T13:20:05,440 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/d9/93/13708d5362f3eeeae6bb9dc49dd033e78b2f36556581dff3a1a4c8944b9e/pyhmmer-0.7.1rc1-cp310-cp310-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,441 Skipping link: No binaries permitted for pyhmmer: 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https://files.pythonhosted.org/packages/ae/0d/f38735e35b50b639b70c9a74b58ea25614a81b0a188d89b692139001bca0/pyhmmer-0.7.1-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,445 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/2e/49/2363ee3fe7995921638cfa8f2df825168c47e0bd05f24374319e6bc8fa5e/pyhmmer-0.7.1-cp37-cp37m-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,445 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/9f/b1/88afa91956eb78f5b19f3e44fabef47e0bc8bd2028c33c2f1740a2ddf406/pyhmmer-0.7.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/29/a9/acec031f4435e796440521c54f78f978cf91203615c29b07c7c9697840e7/pyhmmer-0.7.1-cp38-cp38-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/16/57009ec67d1b33dc1bddfd40c054d0fa2ed0970c357249b81ca9b2c80ac4/pyhmmer-0.7.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/65/61/e5d74affedd6c3ff3d2c17e8dd278921194411035ff093dbb17a8f3e4525/pyhmmer-0.7.1-cp39-cp39-macosx_10_15_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/93/f3/b3f6892b4bb54f3e74c255b7e977acb1b0149601197c40d0e388c481897c/pyhmmer-0.7.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,446 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/f5/95/fb8f90d881b6253d0ca29b0fd714b2237733721aa108b20272801822d7dc/pyhmmer-0.7.1-pp37-pypy37_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/5e/77/bde94d470ac47242abc0754a02a21311339c2d4fc367631d91a940946ab1/pyhmmer-0.7.1-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/83/d3/462aea5aca8f8169bee7b77b380d0221bb8b452e07b54967b352fc9383bd/pyhmmer-0.7.1-pp38-pypy38_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/95/a2/173fe1c90b803e6bfef9190ece6e479552be0f8afdb606e8639d543a35df/pyhmmer-0.7.1-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/45/64/476e25cf2eb37d76881022a6c42c8da9e06a93b1af51fc596ede5c6d68ce/pyhmmer-0.7.1-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,447 Skipping link: No binaries permitted for pyhmmer: https://files.pythonhosted.org/packages/22/b0/978fe1e68b3bdcfb1662358de0b11229dcb0af7b04fec6efdabe0270389a/pyhmmer-0.7.1-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6) 2022-12-15T13:20:05,448 Found link https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz (from https://pypi.org/simple/pyhmmer/) (requires-python:>=3.6), version: 0.7.1 2022-12-15T13:20:05,448 Fetching project page and analyzing links: https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:20:05,449 Getting page https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:20:05,450 Found index url https://www.piwheels.org/simple 2022-12-15T13:20:05,706 Fetched page https://www.piwheels.org/simple/pyhmmer/ as text/html 2022-12-15T13:20:05,707 Skipping link: not a file: https://www.piwheels.org/simple/pyhmmer/ 2022-12-15T13:20:05,707 Skipping link: not a file: https://pypi.org/simple/pyhmmer/ 2022-12-15T13:20:05,729 Given no hashes to check 1 links for project 'pyhmmer': discarding no candidates 2022-12-15T13:20:05,746 Collecting pyhmmer==0.7.1 2022-12-15T13:20:05,748 Created temporary directory: /tmp/pip-unpack-5e6_8c30 2022-12-15T13:20:05,795 Downloading pyhmmer-0.7.1.tar.gz (11.0 MB) 2022-12-15T13:20:09,922 Added pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz to build tracker '/tmp/pip-build-tracker-mwx5z66h' 2022-12-15T13:20:09,927 Created temporary directory: /tmp/pip-build-env-yhtqvqmb 2022-12-15T13:20:09,934 Installing build dependencies: started 2022-12-15T13:20:09,935 Running command pip subprocess to install build dependencies 2022-12-15T13:20:11,173 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-15T13:20:11,562 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:20:11,587 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:20:13,356 Collecting setuptools>=46.4 2022-12-15T13:20:13,499 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-15T13:20:15,681 Collecting cython~=0.29.16 2022-12-15T13:20:17,949 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2022-12-15T13:20:19,898 Installing collected packages: setuptools, cython 2022-12-15T13:20:25,289 Creating /tmp/pip-build-env-yhtqvqmb/overlay/bin 2022-12-15T13:20:25,292 changing mode of /tmp/pip-build-env-yhtqvqmb/overlay/bin/cygdb to 755 2022-12-15T13:20:25,294 changing mode of /tmp/pip-build-env-yhtqvqmb/overlay/bin/cython to 755 2022-12-15T13:20:25,296 changing mode of /tmp/pip-build-env-yhtqvqmb/overlay/bin/cythonize to 755 2022-12-15T13:20:25,320 Successfully installed cython-0.29.32 setuptools-65.6.3 2022-12-15T13:20:25,334 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-15T13:20:25,335 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-15T13:20:25,640 Installing build dependencies: finished with status 'done' 2022-12-15T13:20:25,646 Getting requirements to build wheel: started 2022-12-15T13:20:25,647 Running command Getting requirements to build wheel 2022-12-15T13:20:26,696 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:20:26,956 Getting requirements to build wheel: finished with status 'done' 2022-12-15T13:20:26,972 Installing backend dependencies: started 2022-12-15T13:20:26,973 Running command pip subprocess to install backend dependencies 2022-12-15T13:20:28,166 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-15T13:20:28,538 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-15T13:20:28,564 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-15T13:20:30,540 Collecting wheel 2022-12-15T13:20:30,558 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-15T13:20:32,049 Installing collected packages: wheel 2022-12-15T13:20:32,205 Creating /tmp/pip-build-env-yhtqvqmb/normal/bin 2022-12-15T13:20:32,211 changing mode of /tmp/pip-build-env-yhtqvqmb/normal/bin/wheel to 755 2022-12-15T13:20:32,226 Successfully installed wheel-0.38.4 2022-12-15T13:20:32,239 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-15T13:20:32,239 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-15T13:20:32,448 Installing backend dependencies: finished with status 'done' 2022-12-15T13:20:32,450 Created temporary directory: /tmp/pip-modern-metadata-xzndl3j6 2022-12-15T13:20:32,453 Preparing metadata (pyproject.toml): started 2022-12-15T13:20:32,454 Running command Preparing metadata (pyproject.toml) 2022-12-15T13:20:33,455 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:20:33,612 running dist_info 2022-12-15T13:20:33,626 creating /tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info 2022-12-15T13:20:33,631 writing /tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/PKG-INFO 2022-12-15T13:20:33,635 writing dependency_links to /tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/dependency_links.txt 2022-12-15T13:20:33,637 writing requirements to /tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/requires.txt 2022-12-15T13:20:33,638 writing top-level names to /tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/top_level.txt 2022-12-15T13:20:33,640 writing manifest file '/tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:20:33,695 reading manifest file '/tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:20:33,698 reading manifest template 'MANIFEST.in' 2022-12-15T13:20:34,351 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-15T13:20:34,354 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-15T13:20:34,355 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-15T13:20:34,357 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-15T13:20:34,358 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-15T13:20:34,360 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-15T13:20:34,362 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-15T13:20:34,364 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-15T13:20:34,365 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-15T13:20:34,367 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-15T13:20:34,368 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-15T13:20:34,370 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-15T13:20:34,371 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-15T13:20:34,373 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-15T13:20:34,373 adding license file 'COPYING' 2022-12-15T13:20:34,402 writing manifest file '/tmp/pip-modern-metadata-xzndl3j6/pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:20:34,404 creating '/tmp/pip-modern-metadata-xzndl3j6/pyhmmer-0.7.1.dist-info' 2022-12-15T13:20:34,625 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-15T13:20:34,633 Source in /tmp/pip-wheel-krl3vv2a/pyhmmer_1df3f94ff913476b8bc0c1e4d074c7fd has version 0.7.1, which satisfies requirement pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz 2022-12-15T13:20:34,634 Removed pyhmmer==0.7.1 from https://files.pythonhosted.org/packages/08/b9/653e773ff15145759bf2b8365c88e2f5aad1f30addbb1eddbde05bde02d9/pyhmmer-0.7.1.tar.gz from build tracker '/tmp/pip-build-tracker-mwx5z66h' 2022-12-15T13:20:34,641 Created temporary directory: /tmp/pip-unpack-s6ht6gq3 2022-12-15T13:20:34,642 Building wheels for collected packages: pyhmmer 2022-12-15T13:20:34,647 Created temporary directory: /tmp/pip-wheel-63yxwdke 2022-12-15T13:20:34,647 Destination directory: /tmp/pip-wheel-63yxwdke 2022-12-15T13:20:34,649 Building wheel for pyhmmer (pyproject.toml): started 2022-12-15T13:20:34,651 Running command Building wheel for pyhmmer (pyproject.toml) 2022-12-15T13:20:35,602 pyHMMER is not supported on CPU architecture: 'armv7l' 2022-12-15T13:20:35,787 running bdist_wheel 2022-12-15T13:20:35,801 running build 2022-12-15T13:20:35,801 running build_py 2022-12-15T13:20:35,810 creating build 2022-12-15T13:20:35,810 creating build/lib.linux-armv7l-cpython-39 2022-12-15T13:20:35,811 creating build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:35,812 copying pyhmmer/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:35,814 copying pyhmmer/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:35,816 copying pyhmmer/hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:35,822 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,823 copying pyhmmer/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,825 copying pyhmmer/tests/utils.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,827 copying pyhmmer/tests/test_hmmer.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,830 copying pyhmmer/tests/test_doctest.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,833 copying pyhmmer/tests/test_errors.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:35,836 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,837 copying pyhmmer/tests/test_plan7/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,839 copying pyhmmer/tests/test_plan7/test_hit.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,841 copying pyhmmer/tests/test_plan7/test_hmm.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,844 copying pyhmmer/tests/test_plan7/test_profile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,846 copying pyhmmer/tests/test_plan7/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,849 copying pyhmmer/tests/test_plan7/test_background.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,851 copying pyhmmer/tests/test_plan7/test_tophits.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,853 copying pyhmmer/tests/test_plan7/test_pipeline.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,856 copying pyhmmer/tests/test_plan7/test_tracealigner.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,858 copying pyhmmer/tests/test_plan7/test_optimizedprofile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,860 copying pyhmmer/tests/test_plan7/test_builder.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,863 copying pyhmmer/tests/test_plan7/test_hmmfile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,865 copying pyhmmer/tests/test_plan7/test_traces.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_plan7 2022-12-15T13:20:35,868 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,869 copying pyhmmer/tests/test_easel/__init__.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,872 copying pyhmmer/tests/test_easel/test_msa.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,874 copying pyhmmer/tests/test_easel/test_keyhash.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,876 copying pyhmmer/tests/test_easel/test_randomness.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,878 copying pyhmmer/tests/test_easel/test_sequence.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,881 copying pyhmmer/tests/test_easel/test_sequencefile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,885 copying pyhmmer/tests/test_easel/test_alphabet.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,886 copying pyhmmer/tests/test_easel/test_msafile.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,889 copying pyhmmer/tests/test_easel/test_bitfield.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,891 copying pyhmmer/tests/test_easel/test_block.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,894 copying pyhmmer/tests/test_easel/test_matrix.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,897 copying pyhmmer/tests/test_easel/test_ssi.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,899 copying pyhmmer/tests/test_easel/test_vector.py -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/test_easel 2022-12-15T13:20:35,901 running egg_info 2022-12-15T13:20:35,918 writing pyhmmer.egg-info/PKG-INFO 2022-12-15T13:20:35,922 writing dependency_links to pyhmmer.egg-info/dependency_links.txt 2022-12-15T13:20:35,924 writing requirements to pyhmmer.egg-info/requires.txt 2022-12-15T13:20:35,926 writing top-level names to pyhmmer.egg-info/top_level.txt 2022-12-15T13:20:35,942 reading manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:20:35,961 reading manifest template 'MANIFEST.in' 2022-12-15T13:20:36,576 warning: no previously-included files matching '*.ai' found under directory 'vendor/hmmer' 2022-12-15T13:20:36,579 warning: no previously-included files matching '*.pl' found under directory 'vendor' 2022-12-15T13:20:36,580 no previously-included directories found matching 'vendor/easel/demotic' 2022-12-15T13:20:36,582 no previously-included directories found matching 'vendor/easel/documentation' 2022-12-15T13:20:36,584 no previously-included directories found matching 'vendor/easel/esl_msa_testfiles' 2022-12-15T13:20:36,586 no previously-included directories found matching 'vendor/easel/miniapps' 2022-12-15T13:20:36,588 no previously-included directories found matching 'vendor/easel/testsuite' 2022-12-15T13:20:36,589 no previously-included directories found matching 'vendor/hmmer/autobuild' 2022-12-15T13:20:36,591 no previously-included directories found matching 'vendor/hmmer/documentation' 2022-12-15T13:20:36,593 no previously-included directories found matching 'vendor/hmmer/contrib' 2022-12-15T13:20:36,595 no previously-included directories found matching 'vendor/hmmer/profmark' 2022-12-15T13:20:36,597 no previously-included directories found matching 'vendor/hmmer/testsuite' 2022-12-15T13:20:36,598 no previously-included directories found matching 'vendor/hmmer/test-speed' 2022-12-15T13:20:36,600 no previously-included directories found matching 'vendor/hmmer/tutorial' 2022-12-15T13:20:36,600 adding license file 'COPYING' 2022-12-15T13:20:36,638 writing manifest file 'pyhmmer.egg-info/SOURCES.txt' 2022-12-15T13:20:36,645 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.fileobj' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,646 !! 2022-12-15T13:20:36,646 ############################ 2022-12-15T13:20:36,646 # Package would be ignored # 2022-12-15T13:20:36,646 ############################ 2022-12-15T13:20:36,646 Python recognizes 'pyhmmer.fileobj' as an importable package, 2022-12-15T13:20:36,646 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,647 'pyhmmer.fileobj' has been automatically added to the distribution only 2022-12-15T13:20:36,647 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,647 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,647 Please make sure that 'pyhmmer.fileobj' is included as a package by using 2022-12-15T13:20:36,647 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,647 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,647 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,648 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,648 documentation page. 2022-12-15T13:20:36,648 !! 2022-12-15T13:20:36,648 check.warn(importable) 2022-12-15T13:20:36,649 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.reexports' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,649 !! 2022-12-15T13:20:36,649 ############################ 2022-12-15T13:20:36,649 # Package would be ignored # 2022-12-15T13:20:36,649 ############################ 2022-12-15T13:20:36,649 Python recognizes 'pyhmmer.reexports' as an importable package, 2022-12-15T13:20:36,649 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,650 'pyhmmer.reexports' has been automatically added to the distribution only 2022-12-15T13:20:36,650 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,650 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,650 Please make sure that 'pyhmmer.reexports' is included as a package by using 2022-12-15T13:20:36,650 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,651 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,651 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,651 documentation page. 2022-12-15T13:20:36,651 !! 2022-12-15T13:20:36,651 check.warn(importable) 2022-12-15T13:20:36,652 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,652 !! 2022-12-15T13:20:36,652 ############################ 2022-12-15T13:20:36,652 # Package would be ignored # 2022-12-15T13:20:36,652 ############################ 2022-12-15T13:20:36,653 Python recognizes 'pyhmmer.tests.data' as an importable package, 2022-12-15T13:20:36,653 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,653 'pyhmmer.tests.data' has been automatically added to the distribution only 2022-12-15T13:20:36,653 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,653 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,653 Please make sure that 'pyhmmer.tests.data' is included as a package by using 2022-12-15T13:20:36,654 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,654 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,654 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,654 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,654 documentation page. 2022-12-15T13:20:36,654 !! 2022-12-15T13:20:36,655 check.warn(importable) 2022-12-15T13:20:36,655 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,655 !! 2022-12-15T13:20:36,655 ############################ 2022-12-15T13:20:36,655 # Package would be ignored # 2022-12-15T13:20:36,655 ############################ 2022-12-15T13:20:36,656 Python recognizes 'pyhmmer.tests.data.hmms' as an importable package, 2022-12-15T13:20:36,656 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,656 'pyhmmer.tests.data.hmms' has been automatically added to the distribution only 2022-12-15T13:20:36,656 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,656 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,656 Please make sure that 'pyhmmer.tests.data.hmms' is included as a package by using 2022-12-15T13:20:36,656 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,657 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,657 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,657 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,657 documentation page. 2022-12-15T13:20:36,657 !! 2022-12-15T13:20:36,658 check.warn(importable) 2022-12-15T13:20:36,658 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.bin' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,658 !! 2022-12-15T13:20:36,658 ############################ 2022-12-15T13:20:36,658 # Package would be ignored # 2022-12-15T13:20:36,658 ############################ 2022-12-15T13:20:36,658 Python recognizes 'pyhmmer.tests.data.hmms.bin' as an importable package, 2022-12-15T13:20:36,659 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,659 'pyhmmer.tests.data.hmms.bin' has been automatically added to the distribution only 2022-12-15T13:20:36,659 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,659 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,659 Please make sure that 'pyhmmer.tests.data.hmms.bin' is included as a package by using 2022-12-15T13:20:36,659 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,659 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,659 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,660 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,660 documentation page. 2022-12-15T13:20:36,660 !! 2022-12-15T13:20:36,660 check.warn(importable) 2022-12-15T13:20:36,661 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.db' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,661 !! 2022-12-15T13:20:36,661 ############################ 2022-12-15T13:20:36,661 # Package would be ignored # 2022-12-15T13:20:36,661 ############################ 2022-12-15T13:20:36,661 Python recognizes 'pyhmmer.tests.data.hmms.db' as an importable package, 2022-12-15T13:20:36,661 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,662 'pyhmmer.tests.data.hmms.db' has been automatically added to the distribution only 2022-12-15T13:20:36,662 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,662 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,662 Please make sure that 'pyhmmer.tests.data.hmms.db' is included as a package by using 2022-12-15T13:20:36,662 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,662 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,662 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,663 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,663 documentation page. 2022-12-15T13:20:36,663 !! 2022-12-15T13:20:36,663 check.warn(importable) 2022-12-15T13:20:36,664 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,664 !! 2022-12-15T13:20:36,664 ############################ 2022-12-15T13:20:36,664 # Package would be ignored # 2022-12-15T13:20:36,664 ############################ 2022-12-15T13:20:36,664 Python recognizes 'pyhmmer.tests.data.hmms.txt' as an importable package, 2022-12-15T13:20:36,664 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,665 'pyhmmer.tests.data.hmms.txt' has been automatically added to the distribution only 2022-12-15T13:20:36,665 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,665 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,665 Please make sure that 'pyhmmer.tests.data.hmms.txt' is included as a package by using 2022-12-15T13:20:36,665 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,665 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,665 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,666 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,666 documentation page. 2022-12-15T13:20:36,666 !! 2022-12-15T13:20:36,666 check.warn(importable) 2022-12-15T13:20:36,666 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.hmms.txt2' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,667 !! 2022-12-15T13:20:36,667 ############################ 2022-12-15T13:20:36,667 # Package would be ignored # 2022-12-15T13:20:36,667 ############################ 2022-12-15T13:20:36,667 Python recognizes 'pyhmmer.tests.data.hmms.txt2' as an importable package, 2022-12-15T13:20:36,667 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,668 'pyhmmer.tests.data.hmms.txt2' has been automatically added to the distribution only 2022-12-15T13:20:36,668 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,668 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,668 Please make sure that 'pyhmmer.tests.data.hmms.txt2' is included as a package by using 2022-12-15T13:20:36,668 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,668 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,668 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,669 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,669 documentation page. 2022-12-15T13:20:36,669 !! 2022-12-15T13:20:36,669 check.warn(importable) 2022-12-15T13:20:36,669 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.jackhmmer' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,669 !! 2022-12-15T13:20:36,670 ############################ 2022-12-15T13:20:36,670 # Package would be ignored # 2022-12-15T13:20:36,670 ############################ 2022-12-15T13:20:36,670 Python recognizes 'pyhmmer.tests.data.jackhmmer' as an importable package, 2022-12-15T13:20:36,670 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,670 'pyhmmer.tests.data.jackhmmer' has been automatically added to the distribution only 2022-12-15T13:20:36,671 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,671 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,671 Please make sure that 'pyhmmer.tests.data.jackhmmer' is included as a package by using 2022-12-15T13:20:36,671 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,671 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,671 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,672 documentation page. 2022-12-15T13:20:36,672 !! 2022-12-15T13:20:36,672 check.warn(importable) 2022-12-15T13:20:36,672 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.msa' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,672 !! 2022-12-15T13:20:36,673 ############################ 2022-12-15T13:20:36,673 # Package would be ignored # 2022-12-15T13:20:36,673 ############################ 2022-12-15T13:20:36,673 Python recognizes 'pyhmmer.tests.data.msa' as an importable package, 2022-12-15T13:20:36,673 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,673 'pyhmmer.tests.data.msa' has been automatically added to the distribution only 2022-12-15T13:20:36,674 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,674 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,674 Please make sure that 'pyhmmer.tests.data.msa' is included as a package by using 2022-12-15T13:20:36,674 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,674 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,674 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,674 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,675 documentation page. 2022-12-15T13:20:36,675 !! 2022-12-15T13:20:36,675 check.warn(importable) 2022-12-15T13:20:36,675 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.seqs' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,675 !! 2022-12-15T13:20:36,676 ############################ 2022-12-15T13:20:36,676 # Package would be ignored # 2022-12-15T13:20:36,676 ############################ 2022-12-15T13:20:36,676 Python recognizes 'pyhmmer.tests.data.seqs' as an importable package, 2022-12-15T13:20:36,676 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,676 'pyhmmer.tests.data.seqs' has been automatically added to the distribution only 2022-12-15T13:20:36,677 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,677 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,677 Please make sure that 'pyhmmer.tests.data.seqs' is included as a package by using 2022-12-15T13:20:36,677 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,677 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,677 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,677 documentation page. 2022-12-15T13:20:36,678 !! 2022-12-15T13:20:36,678 check.warn(importable) 2022-12-15T13:20:36,678 /tmp/pip-build-env-yhtqvqmb/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'pyhmmer.tests.data.tables' as data is deprecated, please list it in `packages`. 2022-12-15T13:20:36,678 !! 2022-12-15T13:20:36,679 ############################ 2022-12-15T13:20:36,679 # Package would be ignored # 2022-12-15T13:20:36,679 ############################ 2022-12-15T13:20:36,679 Python recognizes 'pyhmmer.tests.data.tables' as an importable package, 2022-12-15T13:20:36,679 but it is not listed in the `packages` configuration of setuptools. 2022-12-15T13:20:36,679 'pyhmmer.tests.data.tables' has been automatically added to the distribution only 2022-12-15T13:20:36,680 because it may contain data files, but this behavior is likely to change 2022-12-15T13:20:36,680 in future versions of setuptools (and therefore is considered deprecated). 2022-12-15T13:20:36,680 Please make sure that 'pyhmmer.tests.data.tables' is included as a package by using 2022-12-15T13:20:36,680 the `packages` configuration field or the proper discovery methods 2022-12-15T13:20:36,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-15T13:20:36,681 instead of `find_packages(...)`/`find:`). 2022-12-15T13:20:36,681 You can read more about "package discovery" and "data files" on setuptools 2022-12-15T13:20:36,681 documentation page. 2022-12-15T13:20:36,682 !! 2022-12-15T13:20:36,682 check.warn(importable) 2022-12-15T13:20:36,682 copying pyhmmer/daemon.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,682 copying pyhmmer/daemon.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,685 copying pyhmmer/daemon.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,689 copying pyhmmer/easel.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,692 copying pyhmmer/easel.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,695 copying pyhmmer/easel.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,704 copying pyhmmer/errors.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,706 copying pyhmmer/errors.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,709 copying pyhmmer/exceptions.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,711 copying pyhmmer/plan7.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,714 copying pyhmmer/plan7.pyi -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,718 copying pyhmmer/plan7.pyx -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,728 copying pyhmmer/py.typed -> build/lib.linux-armv7l-cpython-39/pyhmmer 2022-12-15T13:20:36,730 creating build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-15T13:20:36,731 copying pyhmmer/fileobj/bsd.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-15T13:20:36,733 copying pyhmmer/fileobj/linux.pxi -> build/lib.linux-armv7l-cpython-39/pyhmmer/fileobj 2022-12-15T13:20:36,736 creating build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,737 copying pyhmmer/reexports/__init__.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,739 copying pyhmmer/reexports/esl_sqio_ascii.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,742 copying pyhmmer/reexports/esl_sqio_ascii.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,744 copying pyhmmer/reexports/p7_hmmfile.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,746 copying pyhmmer/reexports/p7_hmmfile.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,749 copying pyhmmer/reexports/p7_tophits.h -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,751 copying pyhmmer/reexports/p7_tophits.pxd -> build/lib.linux-armv7l-cpython-39/pyhmmer/reexports 2022-12-15T13:20:36,754 copying pyhmmer/tests/requirements.txt -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests 2022-12-15T13:20:36,756 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-12-15T13:20:36,757 copying pyhmmer/tests/data/README.md -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data 2022-12-15T13:20:36,759 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-12-15T13:20:36,760 copying pyhmmer/tests/data/hmms/make.sh -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms 2022-12-15T13:20:36,763 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-15T13:20:36,764 copying pyhmmer/tests/data/hmms/bin/PF02826.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-15T13:20:36,768 copying pyhmmer/tests/data/hmms/bin/PKSI-AT.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-15T13:20:36,772 copying pyhmmer/tests/data/hmms/bin/Thioesterase.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-15T13:20:36,777 copying pyhmmer/tests/data/hmms/bin/t2pks.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/bin 2022-12-15T13:20:36,838 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,839 copying pyhmmer/tests/data/hmms/db/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,844 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,847 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,849 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,852 copying pyhmmer/tests/data/hmms/db/PF02826.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,856 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,862 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,865 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,868 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,872 copying pyhmmer/tests/data/hmms/db/PKSI-AT.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,876 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,882 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,885 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,887 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,891 copying pyhmmer/tests/data/hmms/db/Thioesterase.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:36,895 copying pyhmmer/tests/data/hmms/db/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:37,019 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3f -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:37,043 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3i -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:37,046 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3m -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:37,101 copying pyhmmer/tests/data/hmms/db/t2pks.hmm.h3p -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/db 2022-12-15T13:20:37,161 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,162 copying pyhmmer/tests/data/hmms/txt/LuxC.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,169 copying pyhmmer/tests/data/hmms/txt/PF02826.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,174 copying pyhmmer/tests/data/hmms/txt/PKSI-AT.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,180 copying pyhmmer/tests/data/hmms/txt/Thioesterase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,185 copying pyhmmer/tests/data/hmms/txt/bmyD.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,192 copying pyhmmer/tests/data/hmms/txt/laccase.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,204 copying pyhmmer/tests/data/hmms/txt/t2pks.hmm -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt 2022-12-15T13:20:37,337 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:20:37,338 copying pyhmmer/tests/data/hmms/txt2/PF02826.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:20:37,343 copying pyhmmer/tests/data/hmms/txt2/PKSI-AT.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:20:37,348 copying pyhmmer/tests/data/hmms/txt2/Thioesterase.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:20:37,354 copying pyhmmer/tests/data/hmms/txt2/t2pks.hmm2 -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/hmms/txt2 2022-12-15T13:20:37,448 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-15T13:20:37,449 copying pyhmmer/tests/data/jackhmmer/p12748-1.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-15T13:20:37,453 copying pyhmmer/tests/data/jackhmmer/p12748-2.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-15T13:20:37,455 copying pyhmmer/tests/data/jackhmmer/p12748-3.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/jackhmmer 2022-12-15T13:20:37,458 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-15T13:20:37,459 copying pyhmmer/tests/data/msa/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-15T13:20:37,462 copying pyhmmer/tests/data/msa/LuxC.hmmalign.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-15T13:20:37,465 copying pyhmmer/tests/data/msa/LuxC.sto -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-15T13:20:37,468 copying pyhmmer/tests/data/msa/laccase.clw -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/msa 2022-12-15T13:20:37,471 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,472 copying pyhmmer/tests/data/seqs/938293.PRJEB85.HG003687.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,500 copying pyhmmer/tests/data/seqs/BGC0001090.gbk -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,508 copying pyhmmer/tests/data/seqs/CP000560.2.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,640 copying pyhmmer/tests/data/seqs/CP040672.1.genes_100.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,646 copying pyhmmer/tests/data/seqs/LuxC.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,648 copying pyhmmer/tests/data/seqs/PKSI.faa -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,651 copying pyhmmer/tests/data/seqs/bmyD.fna -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/seqs 2022-12-15T13:20:37,654 creating build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,655 copying pyhmmer/tests/data/tables/A0A089QRB9.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,658 copying pyhmmer/tests/data/tables/PF02826.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,661 copying pyhmmer/tests/data/tables/PF02826.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,663 copying pyhmmer/tests/data/tables/bmyD1.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,666 copying pyhmmer/tests/data/tables/bmyD2.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,668 copying pyhmmer/tests/data/tables/bmyD3.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,670 copying pyhmmer/tests/data/tables/t2pks.domtbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,674 copying pyhmmer/tests/data/tables/t2pks.scan.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,676 copying pyhmmer/tests/data/tables/t2pks.tbl -> build/lib.linux-armv7l-cpython-39/pyhmmer/tests/data/tables 2022-12-15T13:20:37,683 running build_clib 2022-12-15T13:20:37,690 creating build/temp.linux-armv7l-cpython-39 2022-12-15T13:20:37,691 generating "divsufsort.h" for divsufsort library 2022-12-15T13:20:37,692 copying vendor/hmmer/libdivsufsort/divsufsort.h.in -> build/temp.linux-armv7l-cpython-39/divsufsort.h 2022-12-15T13:20:37,694 generating "esl_config.h" for easel library 2022-12-15T13:20:37,696 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdio_h.c -o build/temp.linux-armv7l-cpython-39/have_stdio_h.o 2022-12-15T13:20:37,799 checking whether can be included... yes 2022-12-15T13:20:37,801 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdlib_h.c -o build/temp.linux-armv7l-cpython-39/have_stdlib_h.o 2022-12-15T13:20:37,908 checking whether can be included... yes 2022-12-15T13:20:37,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_string_h.c -o build/temp.linux-armv7l-cpython-39/have_string_h.o 2022-12-15T13:20:37,995 checking whether can be included... yes 2022-12-15T13:20:37,998 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-39/have_inttypes_h.o 2022-12-15T13:20:38,083 checking whether can be included... yes 2022-12-15T13:20:38,086 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdint_h.c -o build/temp.linux-armv7l-cpython-39/have_stdint_h.o 2022-12-15T13:20:38,168 checking whether can be included... yes 2022-12-15T13:20:38,171 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strings_h.c -o build/temp.linux-armv7l-cpython-39/have_strings_h.o 2022-12-15T13:20:38,250 checking whether can be included... yes 2022-12-15T13:20:38,253 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_stat_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_stat_h.o 2022-12-15T13:20:38,356 checking whether can be included... yes 2022-12-15T13:20:38,360 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_types_h.o 2022-12-15T13:20:38,489 checking whether can be included... yes 2022-12-15T13:20:38,493 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_unistd_h.c -o build/temp.linux-armv7l-cpython-39/have_unistd_h.o 2022-12-15T13:20:38,587 checking whether can be included... yes 2022-12-15T13:20:38,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_endian_h.c -o build/temp.linux-armv7l-cpython-39/have_endian_h.o 2022-12-15T13:20:38,672 checking whether can be included... yes 2022-12-15T13:20:38,687 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-39/have_netinet_in_h.o 2022-12-15T13:20:38,811 checking whether can be included... yes 2022-12-15T13:20:38,813 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_param_h.o 2022-12-15T13:20:38,927 checking whether can be included... yes 2022-12-15T13:20:38,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.o 2022-12-15T13:20:39,014 In file included from build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c:1: 2022-12-15T13:20:39,014 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2022-12-15T13:20:39,014 21 | #warning "The header is deprecated and will be removed." 2022-12-15T13:20:39,014 | ^~~~~~~ 2022-12-15T13:20:39,128 checking whether can be included... yes 2022-12-15T13:20:39,130 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_aligned_alloc.c -o build/temp.linux-armv7l-cpython-39/have_aligned_alloc.o -Wno-all 2022-12-15T13:20:39,255 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_aligned_alloc.o -o build/temp.linux-armv7l-cpython-39/have_aligned_alloc.bin 2022-12-15T13:20:39,416 checking whether function 'aligned_alloc' is available... yes 2022-12-15T13:20:39,419 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_erfc.c -o build/temp.linux-armv7l-cpython-39/have_erfc.o -Wno-all 2022-12-15T13:20:39,539 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_erfc.o -o build/temp.linux-armv7l-cpython-39/have_erfc.bin 2022-12-15T13:20:39,647 checking whether function 'erfc' is available... yes 2022-12-15T13:20:39,650 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getpid.c -o build/temp.linux-armv7l-cpython-39/have_getpid.o -Wno-all 2022-12-15T13:20:39,753 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getpid.o -o build/temp.linux-armv7l-cpython-39/have_getpid.bin 2022-12-15T13:20:39,862 checking whether function 'getpid' is available... yes 2022-12-15T13:20:39,866 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have__mm_malloc.c -o build/temp.linux-armv7l-cpython-39/have__mm_malloc.o -Wno-all 2022-12-15T13:20:39,973 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have__mm_malloc.o -o build/temp.linux-armv7l-cpython-39/have__mm_malloc.bin 2022-12-15T13:20:40,073 /usr/bin/ld: build/temp.linux-armv7l-cpython-39/have__mm_malloc.o: in function `main': 2022-12-15T13:20:40,073 /tmp/pip-wheel-krl3vv2a/pyhmmer_1df3f94ff913476b8bc0c1e4d074c7fd/build/temp.linux-armv7l-cpython-39/have__mm_malloc.c:2: undefined reference to `_mm_malloc' 2022-12-15T13:20:40,079 collect2: error: ld returned 1 exit status 2022-12-15T13:20:40,080 checking whether function '_mm_malloc' is available... no 2022-12-15T13:20:40,084 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_popen.c -o build/temp.linux-armv7l-cpython-39/have_popen.o -Wno-all 2022-12-15T13:20:40,214 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_popen.o -o build/temp.linux-armv7l-cpython-39/have_popen.bin 2022-12-15T13:20:40,323 checking whether function 'popen' is available... yes 2022-12-15T13:20:40,326 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_posix_memalign.c -o build/temp.linux-armv7l-cpython-39/have_posix_memalign.o -Wno-all 2022-12-15T13:20:40,443 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_posix_memalign.o -o build/temp.linux-armv7l-cpython-39/have_posix_memalign.bin 2022-12-15T13:20:40,551 checking whether function 'posix_memalign' is available... yes 2022-12-15T13:20:40,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -Wno-all 2022-12-15T13:20:40,645 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.bin 2022-12-15T13:20:40,751 checking whether function 'strcasecmp' is available... yes 2022-12-15T13:20:40,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strsep.c -o build/temp.linux-armv7l-cpython-39/have_strsep.o -Wno-all 2022-12-15T13:20:40,851 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strsep.o -o build/temp.linux-armv7l-cpython-39/have_strsep.bin 2022-12-15T13:20:40,969 checking whether function 'strsep' is available... yes 2022-12-15T13:20:40,974 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysconf.c -o build/temp.linux-armv7l-cpython-39/have_sysconf.o -Wno-all 2022-12-15T13:20:41,125 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysconf.o -o build/temp.linux-armv7l-cpython-39/have_sysconf.bin 2022-12-15T13:20:41,236 checking whether function 'sysconf' is available... yes 2022-12-15T13:20:41,239 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysctl.c -o build/temp.linux-armv7l-cpython-39/have_sysctl.o -Wno-all 2022-12-15T13:20:41,304 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2022-12-15T13:20:41,304 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2022-12-15T13:20:41,304 21 | #warning "The header is deprecated and will be removed." 2022-12-15T13:20:41,305 | ^~~~~~~ 2022-12-15T13:20:41,313 build/temp.linux-armv7l-cpython-39/have_sysctl.c: In function ‘main’: 2022-12-15T13:20:41,313 build/temp.linux-armv7l-cpython-39/have_sysctl.c:4:1: warning: ‘sysctl’ is deprecated [-Wdeprecated-declarations] 2022-12-15T13:20:41,314 4 | int main() { sysctl(NULL, 0, NULL, NULL, NULL, 0); return 0; } 2022-12-15T13:20:41,314 | ^~~ 2022-12-15T13:20:41,314 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2022-12-15T13:20:41,314 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:70:12: note: declared here 2022-12-15T13:20:41,314 70 | extern int sysctl (int *__name, int __nlen, void *__oldval, 2022-12-15T13:20:41,314 | ^~~~~~ 2022-12-15T13:20:41,356 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysctl.o -o build/temp.linux-armv7l-cpython-39/have_sysctl.bin 2022-12-15T13:20:41,489 checking whether function 'sysctl' is available... yes 2022-12-15T13:20:41,492 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_times.c -o build/temp.linux-armv7l-cpython-39/have_times.o -Wno-all 2022-12-15T13:20:41,594 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_times.o -o build/temp.linux-armv7l-cpython-39/have_times.bin 2022-12-15T13:20:41,701 checking whether function 'times' is available... yes 2022-12-15T13:20:41,704 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_fseeko.c -o build/temp.linux-armv7l-cpython-39/have_fseeko.o -Wno-all 2022-12-15T13:20:41,822 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_fseeko.o -o build/temp.linux-armv7l-cpython-39/have_fseeko.bin 2022-12-15T13:20:41,959 checking whether function 'fseeko' is available... yes 2022-12-15T13:20:41,963 generating "p7_config.h" for hmmer library 2022-12-15T13:20:41,965 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_endian_h.c -o build/temp.linux-armv7l-cpython-39/have_endian_h.o 2022-12-15T13:20:42,046 checking whether can be included... yes 2022-12-15T13:20:42,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_inttypes_h.c -o build/temp.linux-armv7l-cpython-39/have_inttypes_h.o 2022-12-15T13:20:42,132 checking whether can be included... yes 2022-12-15T13:20:42,135 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stdint_h.c -o build/temp.linux-armv7l-cpython-39/have_stdint_h.o 2022-12-15T13:20:42,216 checking whether can be included... yes 2022-12-15T13:20:42,219 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_unistd_h.c -o build/temp.linux-armv7l-cpython-39/have_unistd_h.o 2022-12-15T13:20:42,311 checking whether can be included... yes 2022-12-15T13:20:42,313 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_types_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_types_h.o 2022-12-15T13:20:42,407 checking whether can be included... yes 2022-12-15T13:20:42,410 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_netinet_in_h.c -o build/temp.linux-armv7l-cpython-39/have_netinet_in_h.o 2022-12-15T13:20:42,517 checking whether can be included... yes 2022-12-15T13:20:42,519 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_param_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_param_h.o 2022-12-15T13:20:42,632 checking whether can be included... yes 2022-12-15T13:20:42,635 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c -o build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.o 2022-12-15T13:20:42,697 In file included from build/temp.linux-armv7l-cpython-39/have_sys_sysctl_h.c:1: 2022-12-15T13:20:42,697 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2022-12-15T13:20:42,697 21 | #warning "The header is deprecated and will be removed." 2022-12-15T13:20:42,697 | ^~~~~~~ 2022-12-15T13:20:42,757 checking whether can be included... yes 2022-12-15T13:20:42,760 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_mkstemp.c -o build/temp.linux-armv7l-cpython-39/have_mkstemp.o -Wno-all 2022-12-15T13:20:42,876 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_mkstemp.o -o build/temp.linux-armv7l-cpython-39/have_mkstemp.bin 2022-12-15T13:20:42,986 checking whether function 'mkstemp' is available... yes 2022-12-15T13:20:42,989 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_popen.c -o build/temp.linux-armv7l-cpython-39/have_popen.o -Wno-all 2022-12-15T13:20:43,092 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_popen.o -o build/temp.linux-armv7l-cpython-39/have_popen.bin 2022-12-15T13:20:43,202 checking whether function 'popen' is available... yes 2022-12-15T13:20:43,206 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_putenv.c -o build/temp.linux-armv7l-cpython-39/have_putenv.o -Wno-all 2022-12-15T13:20:43,324 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_putenv.o -o build/temp.linux-armv7l-cpython-39/have_putenv.bin 2022-12-15T13:20:43,435 checking whether function 'putenv' is available... yes 2022-12-15T13:20:43,438 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strcasecmp.c -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -Wno-all 2022-12-15T13:20:43,568 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strcasecmp.o -o build/temp.linux-armv7l-cpython-39/have_strcasecmp.bin 2022-12-15T13:20:43,697 checking whether function 'strcasecmp' is available... yes 2022-12-15T13:20:43,700 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_strsep.c -o build/temp.linux-armv7l-cpython-39/have_strsep.o -Wno-all 2022-12-15T13:20:43,797 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_strsep.o -o build/temp.linux-armv7l-cpython-39/have_strsep.bin 2022-12-15T13:20:43,908 checking whether function 'strsep' is available... yes 2022-12-15T13:20:43,911 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_times.c -o build/temp.linux-armv7l-cpython-39/have_times.o -Wno-all 2022-12-15T13:20:44,005 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_times.o -o build/temp.linux-armv7l-cpython-39/have_times.bin 2022-12-15T13:20:44,125 checking whether function 'times' is available... yes 2022-12-15T13:20:44,128 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getpid.c -o build/temp.linux-armv7l-cpython-39/have_getpid.o -Wno-all 2022-12-15T13:20:44,231 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getpid.o -o build/temp.linux-armv7l-cpython-39/have_getpid.bin 2022-12-15T13:20:44,364 checking whether function 'getpid' is available... yes 2022-12-15T13:20:44,368 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysctl.c -o build/temp.linux-armv7l-cpython-39/have_sysctl.o -Wno-all 2022-12-15T13:20:44,434 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2022-12-15T13:20:44,434 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 2022-12-15T13:20:44,434 21 | #warning "The header is deprecated and will be removed." 2022-12-15T13:20:44,434 | ^~~~~~~ 2022-12-15T13:20:44,442 build/temp.linux-armv7l-cpython-39/have_sysctl.c: In function ‘main’: 2022-12-15T13:20:44,442 build/temp.linux-armv7l-cpython-39/have_sysctl.c:4:1: warning: ‘sysctl’ is deprecated [-Wdeprecated-declarations] 2022-12-15T13:20:44,442 4 | int main() { sysctl(NULL, 0, NULL, NULL, NULL, 0); return 0; } 2022-12-15T13:20:44,443 | ^~~ 2022-12-15T13:20:44,443 In file included from build/temp.linux-armv7l-cpython-39/have_sysctl.c:2: 2022-12-15T13:20:44,443 /usr/include/arm-linux-gnueabihf/sys/sysctl.h:70:12: note: declared here 2022-12-15T13:20:44,443 70 | extern int sysctl (int *__name, int __nlen, void *__oldval, 2022-12-15T13:20:44,444 | ^~~~~~ 2022-12-15T13:20:44,484 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysctl.o -o build/temp.linux-armv7l-cpython-39/have_sysctl.bin 2022-12-15T13:20:44,608 checking whether function 'sysctl' is available... yes 2022-12-15T13:20:44,611 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_sysconf.c -o build/temp.linux-armv7l-cpython-39/have_sysconf.o -Wno-all 2022-12-15T13:20:44,714 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_sysconf.o -o build/temp.linux-armv7l-cpython-39/have_sysconf.bin 2022-12-15T13:20:44,824 checking whether function 'sysconf' is available... yes 2022-12-15T13:20:44,827 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_getcwd.c -o build/temp.linux-armv7l-cpython-39/have_getcwd.o -Wno-all 2022-12-15T13:20:44,931 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_getcwd.o -o build/temp.linux-armv7l-cpython-39/have_getcwd.bin 2022-12-15T13:20:45,039 checking whether function 'getcwd' is available... yes 2022-12-15T13:20:45,042 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_chmod.c -o build/temp.linux-armv7l-cpython-39/have_chmod.o -Wno-all 2022-12-15T13:20:45,165 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_chmod.o -o build/temp.linux-armv7l-cpython-39/have_chmod.bin 2022-12-15T13:20:45,310 checking whether function 'chmod' is available... yes 2022-12-15T13:20:45,313 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_stat.c -o build/temp.linux-armv7l-cpython-39/have_stat.o -Wno-all 2022-12-15T13:20:45,414 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_stat.o -o build/temp.linux-armv7l-cpython-39/have_stat.bin 2022-12-15T13:20:45,523 checking whether function 'stat' is available... yes 2022-12-15T13:20:45,526 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_fstat.c -o build/temp.linux-armv7l-cpython-39/have_fstat.o -Wno-all 2022-12-15T13:20:45,633 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_fstat.o -o build/temp.linux-armv7l-cpython-39/have_fstat.bin 2022-12-15T13:20:45,746 checking whether function 'fstat' is available... yes 2022-12-15T13:20:45,749 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -c build/temp.linux-armv7l-cpython-39/have_erfc.c -o build/temp.linux-armv7l-cpython-39/have_erfc.o -Wno-all 2022-12-15T13:20:45,871 arm-linux-gnueabihf-gcc -pthread build/temp.linux-armv7l-cpython-39/have_erfc.o -o build/temp.linux-armv7l-cpython-39/have_erfc.bin 2022-12-15T13:20:45,980 checking whether function 'erfc' is available... yes 2022-12-15T13:20:45,983 generating build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c from vendor/easel/esl_sqio_ascii.c 2022-12-15T13:20:45,993 generating build/temp.linux-armv7l-cpython-39/p7_hmmfile.c from vendor/hmmer/src/p7_hmmfile.c 2022-12-15T13:20:46,005 generating build/temp.linux-armv7l-cpython-39/libdivsufsort.a from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-15T13:20:46,069 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o from vendor/hmmer/libdivsufsort/divsufsort.c 2022-12-15T13:20:46,069 creating build/temp.linux-armv7l-cpython-39/vendor 2022-12-15T13:20:46,070 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer 2022-12-15T13:20:46,071 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort 2022-12-15T13:20:46,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/libdivsufsort/divsufsort.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-15T13:20:49,895 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libdivsufsort.a build/temp.linux-armv7l-cpython-39/vendor/hmmer/libdivsufsort/divsufsort.o 2022-12-15T13:20:49,923 generating build/temp.linux-armv7l-cpython-39/libeasel.a from vendor/easel/interface_lapack.c, vendor/easel/esl_gamma.c, vendor/easel/esl_msaweight.c, vendor/easel/esl_keyhash.c, vendor/easel/esl_paml.c, vendor/easel/esl_scorematrix.c, vendor/easel/esl_sqio_ncbi.c, vendor/easel/esl_msafile.c, vendor/easel/esl_msafile_afa.c, vendor/easel/esl_hmm.c, vendor/easel/esl_buffer.c, vendor/easel/esl_graph.c, vendor/easel/esl_bitfield.c, vendor/easel/interface_gsl.c, vendor/easel/esl_gencode.c, vendor/easel/esl_msafile_a2m.c, vendor/easel/esl_sqio.c, vendor/easel/esl_msafile2.c, vendor/easel/esl_dirichlet.c, vendor/easel/esl_mem.c, vendor/easel/esl_alphabet.c, vendor/easel/esl_neon.c, vendor/easel/esl_minimizer.c, vendor/easel/esl_avx.c, vendor/easel/esl_msafile_psiblast.c, vendor/easel/esl_stretchexp.c, vendor/easel/esl_stats.c, vendor/easel/easel.c, vendor/easel/esl_msafile_clustal.c, vendor/easel/esl_fileparser.c, vendor/easel/esl_msa.c, vendor/easel/esl_vmx.c, vendor/easel/esl_msafile_stockholm.c, vendor/easel/esl_composition.c, vendor/easel/esl_msashuffle.c, vendor/easel/esl_arr3.c, vendor/easel/esl_mpi.c, vendor/easel/esl_msacluster.c, vendor/easel/esl_mixdchlet.c, vendor/easel/esl_dmatrix.c, vendor/easel/esl_weibull.c, vendor/easel/esl_varint.c, vendor/easel/esl_recorder.c, vendor/easel/esl_randomseq.c, vendor/easel/esl_stack.c, vendor/easel/esl_subcmd.c, vendor/easel/esl_dsqdata.c, vendor/easel/esl_histogram.c, vendor/easel/esl_avx512.c, vendor/easel/esl_workqueue.c, vendor/easel/esl_gumbel.c, vendor/easel/esl_msafile_selex.c, vendor/easel/esl_sq.c, vendor/easel/esl_threads.c, vendor/easel/esl_sse.c, vendor/easel/esl_normal.c, vendor/easel/esl_quicksort.c, vendor/easel/esl_vectorops.c, vendor/easel/esl_tree.c, vendor/easel/esl_rand64.c, vendor/easel/esl_cpu.c, vendor/easel/esl_json.c, vendor/easel/esl_huffman.c, vendor/easel/esl_alloc.c, vendor/easel/esl_hyperexp.c, vendor/easel/esl_rootfinder.c, vendor/easel/esl_cluster.c, vendor/easel/esl_msafile_phylip.c, vendor/easel/esl_exponential.c, vendor/easel/esl_gev.c, vendor/easel/esl_heap.c, vendor/easel/esl_red_black.c, vendor/easel/esl_arr2.c, vendor/easel/esl_distance.c, vendor/easel/esl_random.c, vendor/easel/esl_regexp.c, vendor/easel/esl_stopwatch.c, vendor/easel/esl_wuss.c, vendor/easel/esl_mixgev.c, vendor/easel/esl_ssi.c, vendor/easel/esl_getopts.c, vendor/easel/esl_swat.c, vendor/easel/esl_matrixops.c, vendor/easel/esl_ratematrix.c, build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-12-15T13:20:49,927 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o from vendor/easel/interface_lapack.c 2022-12-15T13:20:49,928 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o from vendor/easel/esl_dirichlet.c 2022-12-15T13:20:49,928 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o from vendor/easel/esl_sqio_ncbi.c 2022-12-15T13:20:49,929 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o from vendor/easel/esl_bitfield.c 2022-12-15T13:20:49,929 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-12-15T13:20:49,930 creating build/temp.linux-armv7l-cpython-39/vendor/easel 2022-12-15T13:20:49,930 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dirichlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o 2022-12-15T13:20:49,932 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_bitfield.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o 2022-12-15T13:20:49,937 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_lapack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o 2022-12-15T13:20:49,940 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio_ncbi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o 2022-12-15T13:20:50,046 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o from vendor/easel/esl_gamma.c 2022-12-15T13:20:50,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gamma.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o 2022-12-15T13:20:50,214 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ParseIndexFile’: 2022-12-15T13:20:50,215 vendor/easel/esl_sqio_ncbi.c:216:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,216 216 | if (htobe32(info[1]) != dbtype) status = eslEUNIMPLEMENTED; 2022-12-15T13:20:50,216 | ^~ 2022-12-15T13:20:50,218 vendor/easel/esl_sqio_ncbi.c:226:58: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,218 226 | if (fread(ncbi->title, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-15T13:20:50,219 | ^~ 2022-12-15T13:20:50,220 vendor/easel/esl_sqio_ncbi.c:233:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,220 233 | if (fread(ncbi->timestamp, sizeof(char), len, ncbi->fppin) != len) { status = eslFAIL; goto ERROR; } 2022-12-15T13:20:50,221 | ^~ 2022-12-15T13:20:50,233 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_Read’: 2022-12-15T13:20:50,234 vendor/easel/esl_sqio_ncbi.c:758:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,234 758 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,234 | ^~ 2022-12-15T13:20:50,236 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadInfo’: 2022-12-15T13:20:50,236 vendor/easel/esl_sqio_ncbi.c:809:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,237 809 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,237 | ^~ 2022-12-15T13:20:50,238 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadSequence’: 2022-12-15T13:20:50,239 vendor/easel/esl_sqio_ncbi.c:860:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,240 860 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,240 | ^~ 2022-12-15T13:20:50,244 vendor/easel/esl_sqio_ncbi.c: In function ‘sqncbi_ReadWindow’: 2022-12-15T13:20:50,245 vendor/easel/esl_sqio_ncbi.c:1036:33: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,246 1036 | if (status != eslOK || nres != W) { 2022-12-15T13:20:50,246 | ^~ 2022-12-15T13:20:50,249 vendor/easel/esl_sqio_ncbi.c:1059:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,249 1059 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,249 | ^~ 2022-12-15T13:20:50,250 generating build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o from vendor/easel/interface_gsl.c 2022-12-15T13:20:50,251 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/interface_gsl.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o 2022-12-15T13:20:50,262 vendor/easel/esl_sqio_ncbi.c: In function ‘volume_open’: 2022-12-15T13:20:50,264 vendor/easel/esl_sqio_ncbi.c:1421:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,264 1421 | if (volume < 0 || volume > ncbi->volumes) return eslEINVAL; 2022-12-15T13:20:50,265 | ^ 2022-12-15T13:20:50,270 vendor/easel/esl_sqio_ncbi.c:1458:24: warning: comparison of integer expressions of different signedness: ‘__uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,271 1458 | if (htobe32(info[1]) != dbtype) status = eslEFORMAT; 2022-12-15T13:20:50,271 | ^~ 2022-12-15T13:20:50,273 vendor/easel/esl_sqio_ncbi.c: In function ‘pos_sequence’: 2022-12-15T13:20:50,274 vendor/easel/esl_sqio_ncbi.c:1513:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,275 1513 | if (inx < 0 || inx > ncbi->num_seq) return eslEINVAL; 2022-12-15T13:20:50,275 | ^ 2022-12-15T13:20:50,277 vendor/easel/esl_sqio_ncbi.c:1519:25: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,278 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:20:50,278 | ^~ 2022-12-15T13:20:50,280 vendor/easel/esl_sqio_ncbi.c:1519:38: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,280 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:20:50,280 | ^ 2022-12-15T13:20:50,282 vendor/easel/esl_sqio_ncbi.c:1519:53: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,283 1519 | if (ncbi->index_start == -1 || inx < start || inx > end) { 2022-12-15T13:20:50,283 | ^ 2022-12-15T13:20:50,285 vendor/easel/esl_sqio_ncbi.c:1524:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,285 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-15T13:20:50,285 | ^ 2022-12-15T13:20:50,287 vendor/easel/esl_sqio_ncbi.c:1524:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,288 1524 | if (inx < volume->start_seq || inx > volume->end_seq) { 2022-12-15T13:20:50,288 | ^ 2022-12-15T13:20:50,290 vendor/easel/esl_sqio_ncbi.c:1526:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,290 1526 | for (cnt = 0; cnt < ncbi->volumes; ++cnt) { 2022-12-15T13:20:50,290 | ^ 2022-12-15T13:20:50,291 vendor/easel/esl_sqio_ncbi.c:1527:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,292 1527 | if (inx < volume->end_seq) break; 2022-12-15T13:20:50,292 | ^ 2022-12-15T13:20:50,294 vendor/easel/esl_sqio_ncbi.c:1532:10: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,294 1532 | if (cnt >= ncbi->volumes) return eslFAIL; 2022-12-15T13:20:50,295 | ^~ 2022-12-15T13:20:50,297 vendor/easel/esl_sqio_ncbi.c:1539:27: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,297 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-12-15T13:20:50,297 | ^~ 2022-12-15T13:20:50,299 vendor/easel/esl_sqio_ncbi.c:1539:40: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,299 1539 | if (ncbi->index_start == -1 || inx > end) { 2022-12-15T13:20:50,300 | ^ 2022-12-15T13:20:50,302 vendor/easel/esl_sqio_ncbi.c:1564:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,302 1564 | if (fread(ncbi->hdr_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:20:50,302 | ^~ 2022-12-15T13:20:50,304 vendor/easel/esl_sqio_ncbi.c:1572:70: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,304 1572 | if (fread(ncbi->seq_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:20:50,305 | ^~ 2022-12-15T13:20:50,306 vendor/easel/esl_sqio_ncbi.c:1581:72: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,306 1581 | if (fread(ncbi->amb_indexes, sizeof(uint32_t), cnt, ncbi->fppin) != cnt) { 2022-12-15T13:20:50,307 | ^~ 2022-12-15T13:20:50,309 vendor/easel/esl_sqio_ncbi.c: In function ‘read_amino’: 2022-12-15T13:20:50,310 vendor/easel/esl_sqio_ncbi.c:1623:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,311 1623 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,311 | ^~ 2022-12-15T13:20:50,313 vendor/easel/esl_sqio_ncbi.c:1633:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,314 1633 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:20:50,314 | ^~ 2022-12-15T13:20:50,316 vendor/easel/esl_sqio_ncbi.c:1641:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,317 1641 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:20:50,317 | ^~ 2022-12-15T13:20:50,318 vendor/easel/esl_sqio_ncbi.c: In function ‘read_dna’: 2022-12-15T13:20:50,320 vendor/easel/esl_sqio_ncbi.c:1690:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,320 1690 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,320 | ^~ 2022-12-15T13:20:50,322 vendor/easel/esl_sqio_ncbi.c:1701:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,323 1701 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:20:50,323 | ^~ 2022-12-15T13:20:50,329 vendor/easel/esl_sqio_ncbi.c:1754:33: warning: comparison of integer expressions of different signedness: ‘long unsigned int’ and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,329 1754 | if (ncbi->seq_apos - sq->doff < size) { 2022-12-15T13:20:50,330 | ^ 2022-12-15T13:20:50,330 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o from vendor/easel/esl_mem.c 2022-12-15T13:20:50,331 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mem.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o 2022-12-15T13:20:50,333 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_amino’: 2022-12-15T13:20:50,335 vendor/easel/esl_sqio_ncbi.c:1831:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,335 1831 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,335 | ^~ 2022-12-15T13:20:50,340 vendor/easel/esl_sqio_ncbi.c:1856:51: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,340 1856 | if (fread(ptr, sizeof(char), size, ncbi->fppsq) != size) return eslEFORMAT; 2022-12-15T13:20:50,340 | ^~ 2022-12-15T13:20:50,348 vendor/easel/esl_sqio_ncbi.c: In function ‘read_nres_dna’: 2022-12-15T13:20:50,350 vendor/easel/esl_sqio_ncbi.c:2005:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,350 2005 | if (ncbi->index >= ncbi->num_seq) return eslEOF; 2022-12-15T13:20:50,351 | ^~ 2022-12-15T13:20:50,355 vendor/easel/esl_sqio_ncbi.c:2047:62: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,356 2047 | if (fread(ncbi->hdr_buf, sizeof(char), ssize, ncbi->fppsq) != ssize) return eslEFORMAT; 2022-12-15T13:20:50,356 | ^~ 2022-12-15T13:20:50,361 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o from vendor/easel/esl_gencode.c 2022-12-15T13:20:50,362 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gencode.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o 2022-12-15T13:20:50,366 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_dna’: 2022-12-15T13:20:50,367 vendor/easel/esl_sqio_ncbi.c:2178:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,368 2178 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-15T13:20:50,368 | ^ 2022-12-15T13:20:50,369 vendor/easel/esl_sqio_ncbi.c:2179:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,369 2179 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-15T13:20:50,369 | ^ 2022-12-15T13:20:50,370 vendor/easel/esl_sqio_ncbi.c:2187:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,370 2187 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-15T13:20:50,371 | ^~ 2022-12-15T13:20:50,372 vendor/easel/esl_sqio_ncbi.c: In function ‘inmap_ncbi_amino’: 2022-12-15T13:20:50,373 vendor/easel/esl_sqio_ncbi.c:2226:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,374 2226 | for (x = 0; x < strlen(ncbisym); ++x) { 2022-12-15T13:20:50,374 | ^ 2022-12-15T13:20:50,375 vendor/easel/esl_sqio_ncbi.c:2227:19: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,375 2227 | for (y = 0; y < strlen(abc->sym); ++y) { 2022-12-15T13:20:50,375 | ^ 2022-12-15T13:20:50,377 vendor/easel/esl_sqio_ncbi.c:2235:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:50,377 2235 | if (y >= strlen(abc->sym)) return eslEFORMAT; 2022-12-15T13:20:50,377 | ^~ 2022-12-15T13:20:50,381 vendor/easel/esl_sqio_ncbi.c: In function ‘parse_header’: 2022-12-15T13:20:50,382 vendor/easel/esl_sqio_ncbi.c:2463:61: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:50,382 2463 | if (fread(ncbi->hdr_buf, sizeof(char), size, ncbi->fpphr) != size) return eslEFORMAT; 2022-12-15T13:20:50,383 | ^~ 2022-12-15T13:20:50,783 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o from vendor/easel/esl_msaweight.c 2022-12-15T13:20:50,784 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msaweight.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o 2022-12-15T13:20:51,661 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o from vendor/easel/esl_alphabet.c 2022-12-15T13:20:51,662 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o from vendor/easel/esl_msafile_a2m.c 2022-12-15T13:20:51,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alphabet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o 2022-12-15T13:20:51,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_a2m.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o 2022-12-15T13:20:51,853 vendor/easel/esl_alphabet.c: In function ‘esl_alphabet_CreateCustom’: 2022-12-15T13:20:51,854 vendor/easel/esl_alphabet.c:107:24: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:51,854 107 | if (strlen(alphabet) != Kp) ESL_XEXCEPTION(eslEINVAL, "alphabet length != Kp"); 2022-12-15T13:20:51,855 | ^~ 2022-12-15T13:20:52,469 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o from vendor/easel/esl_keyhash.c 2022-12-15T13:20:52,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_keyhash.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o 2022-12-15T13:20:52,663 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Clone’: 2022-12-15T13:20:52,663 vendor/easel/esl_keyhash.c:94:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,664 94 | for (h = 0; h < kh->hashsize; h++) 2022-12-15T13:20:52,664 | ^ 2022-12-15T13:20:52,665 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Reuse’: 2022-12-15T13:20:52,665 vendor/easel/esl_keyhash.c:171:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,666 171 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:20:52,666 | ^ 2022-12-15T13:20:52,666 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Dump’: 2022-12-15T13:20:52,667 vendor/easel/esl_keyhash.c:215:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘const unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,667 215 | for (h = 0; h < kh->hashsize; h++) 2022-12-15T13:20:52,667 | ^ 2022-12-15T13:20:52,669 vendor/easel/esl_keyhash.c: In function ‘esl_keyhash_Store’: 2022-12-15T13:20:52,669 vendor/easel/esl_keyhash.c:310:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,670 310 | if (kh->nkeys > 3*kh->hashsize) 2022-12-15T13:20:52,671 | ^ 2022-12-15T13:20:52,673 vendor/easel/esl_keyhash.c: In function ‘keyhash_create’: 2022-12-15T13:20:52,673 vendor/easel/esl_keyhash.c:401:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,673 401 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:20:52,674 | ^ 2022-12-15T13:20:52,675 vendor/easel/esl_keyhash.c: In function ‘key_upsize’: 2022-12-15T13:20:52,676 vendor/easel/esl_keyhash.c:491:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:52,676 491 | for (i = 0; i < kh->hashsize; i++) kh->hashtable[i] = -1; 2022-12-15T13:20:52,676 | ^ 2022-12-15T13:20:53,208 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o from vendor/easel/esl_paml.c 2022-12-15T13:20:53,209 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_paml.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o 2022-12-15T13:20:53,253 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o from vendor/easel/esl_sqio.c 2022-12-15T13:20:53,254 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sqio.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o 2022-12-15T13:20:53,478 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o from vendor/easel/esl_neon.c 2022-12-15T13:20:53,479 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_neon.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o 2022-12-15T13:20:53,564 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o from vendor/easel/esl_scorematrix.c 2022-12-15T13:20:53,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_scorematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o 2022-12-15T13:20:53,605 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o from vendor/easel/esl_minimizer.c 2022-12-15T13:20:53,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_minimizer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o 2022-12-15T13:20:53,993 vendor/easel/esl_minimizer.c: In function ‘esl_min_ConjugateGradientDescent’: 2022-12-15T13:20:53,994 vendor/easel/esl_minimizer.c:243:23: warning: ‘fx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:20:53,994 243 | if (opt_fx) *opt_fx = fx; 2022-12-15T13:20:53,995 | ~~~~~~~~^~~~ 2022-12-15T13:20:53,995 vendor/easel/esl_minimizer.c:720:21: warning: ‘cx’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:20:53,995 720 | m = 0.5 * (a+b); 2022-12-15T13:20:53,995 | ~~^~~ 2022-12-15T13:20:53,996 vendor/easel/esl_minimizer.c:118:16: note: ‘cx’ was declared here 2022-12-15T13:20:53,996 118 | double ax,bx,cx; 2022-12-15T13:20:53,996 | ^~ 2022-12-15T13:20:53,997 vendor/easel/esl_minimizer.c:720:21: warning: ‘ax’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:20:53,997 720 | m = 0.5 * (a+b); 2022-12-15T13:20:53,997 | ~~^~~ 2022-12-15T13:20:53,997 vendor/easel/esl_minimizer.c:118:10: note: ‘ax’ was declared here 2022-12-15T13:20:53,998 118 | double ax,bx,cx; 2022-12-15T13:20:53,998 | ^~ 2022-12-15T13:20:54,378 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o from vendor/easel/esl_msafile2.c 2022-12-15T13:20:54,379 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o 2022-12-15T13:20:54,565 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o from vendor/easel/esl_avx.c 2022-12-15T13:20:54,566 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o 2022-12-15T13:20:54,609 In file included from vendor/easel/esl_msafile2.c:26: 2022-12-15T13:20:54,610 vendor/easel/esl_msafile2.c: In function ‘esl_msafile2_ReadInfoPfam’: 2022-12-15T13:20:54,611 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:54,612 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:20:54,612 | ^ 2022-12-15T13:20:54,612 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:20:54,613 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-15T13:20:54,613 | ^~~~~~~ 2022-12-15T13:20:54,614 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:20:54,614 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:20:54,614 | ^~~ 2022-12-15T13:20:54,615 vendor/easel/esl_msafile2.c:630:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:20:54,615 630 | for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); 2022-12-15T13:20:54,615 | ^~~~~~~ 2022-12-15T13:20:54,617 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:20:54,618 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:20:54,618 | ^ 2022-12-15T13:20:54,618 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:20:54,618 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-15T13:20:54,619 | ^~~~~~~ 2022-12-15T13:20:54,620 vendor/easel/easel.h:417:42: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:20:54,620 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:20:54,620 | ^~~ 2022-12-15T13:20:54,620 vendor/easel/esl_msafile2.c:639:43: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:20:54,621 639 | for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); 2022-12-15T13:20:54,621 | ^~~~~~~ 2022-12-15T13:20:54,718 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o from vendor/easel/esl_msafile_psiblast.c 2022-12-15T13:20:54,719 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_psiblast.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o 2022-12-15T13:20:54,891 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o from vendor/easel/esl_msafile.c 2022-12-15T13:20:54,892 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o 2022-12-15T13:20:55,553 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o from vendor/easel/esl_msa.c 2022-12-15T13:20:55,554 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o 2022-12-15T13:20:55,717 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o from vendor/easel/esl_stretchexp.c 2022-12-15T13:20:55,718 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stretchexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o 2022-12-15T13:20:56,053 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o from vendor/easel/esl_msafile_afa.c 2022-12-15T13:20:56,054 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_afa.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o 2022-12-15T13:20:56,334 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o from vendor/easel/esl_stats.c 2022-12-15T13:20:56,335 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stats.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o 2022-12-15T13:20:56,706 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o from vendor/easel/esl_hmm.c 2022-12-15T13:20:56,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hmm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o 2022-12-15T13:20:56,901 In file included from vendor/easel/esl_hmm.c:9: 2022-12-15T13:20:56,901 vendor/easel/esl_hmm.c: In function ‘esl_hmx_GrowTo’: 2022-12-15T13:20:56,902 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:20:56,902 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:20:56,902 | ^ 2022-12-15T13:20:56,903 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:20:56,903 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-15T13:20:56,903 | ^~~~~~~ 2022-12-15T13:20:56,903 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:20:56,904 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:20:56,904 | ^~~ 2022-12-15T13:20:56,904 vendor/easel/esl_hmm.c:265:20: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:20:56,905 265 | mx->validR = ESL_MIN(mx->ncells / mx->allocM, mx->allocR); 2022-12-15T13:20:56,905 | ^~~~~~~ 2022-12-15T13:20:57,191 generating build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o from vendor/easel/easel.c 2022-12-15T13:20:57,193 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/easel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o 2022-12-15T13:20:57,426 vendor/easel/easel.c: In function ‘esl_FileNewSuffix’: 2022-12-15T13:20:57,427 vendor/easel/easel.c:1807:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘size_t’ {aka ‘unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:20:57,427 1807 | nf = (lastdot == NULL)? strlen(filename) : lastdot-filename; 2022-12-15T13:20:57,428 | ^~~~~~~~~~~~~~~~ 2022-12-15T13:20:57,580 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o from vendor/easel/esl_mpi.c 2022-12-15T13:20:57,581 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mpi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o 2022-12-15T13:20:57,809 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o from vendor/easel/esl_msacluster.c 2022-12-15T13:20:57,810 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msacluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o 2022-12-15T13:20:57,860 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o from vendor/easel/esl_buffer.c 2022-12-15T13:20:57,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_buffer.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o 2022-12-15T13:20:58,184 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o from vendor/easel/esl_mixdchlet.c 2022-12-15T13:20:58,185 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixdchlet.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o 2022-12-15T13:20:58,708 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o from vendor/easel/esl_msafile_clustal.c 2022-12-15T13:20:58,709 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_clustal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o 2022-12-15T13:20:59,193 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o from vendor/easel/esl_dmatrix.c 2022-12-15T13:20:59,194 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dmatrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o 2022-12-15T13:20:59,539 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o from vendor/easel/esl_graph.c 2022-12-15T13:20:59,540 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_graph.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o 2022-12-15T13:20:59,959 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o from vendor/easel/esl_recorder.c 2022-12-15T13:20:59,960 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_recorder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o 2022-12-15T13:21:00,144 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o from vendor/easel/esl_fileparser.c 2022-12-15T13:21:00,145 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_fileparser.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o 2022-12-15T13:21:00,284 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o from vendor/easel/esl_vmx.c 2022-12-15T13:21:00,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vmx.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o 2022-12-15T13:21:00,400 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o from vendor/easel/esl_msafile_stockholm.c 2022-12-15T13:21:00,401 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_stockholm.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o 2022-12-15T13:21:00,619 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o from vendor/easel/esl_randomseq.c 2022-12-15T13:21:00,620 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_randomseq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o 2022-12-15T13:21:00,706 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o from vendor/easel/esl_avx512.c 2022-12-15T13:21:00,707 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_avx512.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o 2022-12-15T13:21:00,840 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o from vendor/easel/esl_workqueue.c 2022-12-15T13:21:00,841 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_workqueue.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o 2022-12-15T13:21:00,939 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o from vendor/easel/esl_gumbel.c 2022-12-15T13:21:00,940 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gumbel.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o 2022-12-15T13:21:00,952 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o from vendor/easel/esl_weibull.c 2022-12-15T13:21:00,953 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_weibull.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o 2022-12-15T13:21:01,505 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o from vendor/easel/esl_varint.c 2022-12-15T13:21:01,506 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_varint.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o 2022-12-15T13:21:01,736 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o from vendor/easel/esl_msafile_selex.c 2022-12-15T13:21:01,737 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_selex.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o 2022-12-15T13:21:01,962 vendor/easel/esl_varint.c: In function ‘esl_varint_google_decode’: 2022-12-15T13:21:01,962 vendor/easel/esl_varint.c:474:11: warning: ‘grp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:21:01,962 474 | if (grp & cmask) { status = eslEOD; goto ERROR; } 2022-12-15T13:21:01,963 | ~~~~^~~~~~~ 2022-12-15T13:21:02,048 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o from vendor/easel/esl_sse.c 2022-12-15T13:21:02,049 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sse.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o 2022-12-15T13:21:02,171 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o from vendor/easel/esl_normal.c 2022-12-15T13:21:02,172 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_normal.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o 2022-12-15T13:21:02,463 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o from vendor/easel/esl_quicksort.c 2022-12-15T13:21:02,465 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_quicksort.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o 2022-12-15T13:21:02,584 vendor/easel/esl_msafile_selex.c: In function ‘esl_msafile_selex_Read’: 2022-12-15T13:21:02,584 vendor/easel/esl_msafile_selex.c:722:71: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:21:02,584 722 | for (alen = msa->alen+nleft+ntext; alen < msa->alen+nadd; alen++) p[alen] = '.'; 2022-12-15T13:21:02,585 | ^ 2022-12-15T13:21:02,585 vendor/easel/esl_msafile_selex.c:645:13: note: ‘p’ was declared here 2022-12-15T13:21:02,586 645 | char *p; 2022-12-15T13:21:02,586 | ^ 2022-12-15T13:21:02,679 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o from vendor/easel/esl_stack.c 2022-12-15T13:21:02,680 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stack.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o 2022-12-15T13:21:02,839 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o from vendor/easel/esl_vectorops.c 2022-12-15T13:21:02,840 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_vectorops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o 2022-12-15T13:21:03,288 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o from vendor/easel/esl_subcmd.c 2022-12-15T13:21:03,289 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_subcmd.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o 2022-12-15T13:21:03,586 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o from vendor/easel/esl_dsqdata.c 2022-12-15T13:21:03,587 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_dsqdata.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o 2022-12-15T13:21:03,835 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Open’: 2022-12-15T13:21:03,836 vendor/easel/esl_dsqdata.c:253:21: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:03,836 253 | if (alphatype != dd->abc_r->type) 2022-12-15T13:21:03,837 | ^~ 2022-12-15T13:21:03,848 vendor/easel/esl_dsqdata.c: In function ‘esl_dsqdata_Write’: 2022-12-15T13:21:03,851 vendor/easel/esl_dsqdata.c:614:17: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:03,851 614 | if (sq->n > max_seqlen) max_seqlen = sq->n; 2022-12-15T13:21:03,852 | ^ 2022-12-15T13:21:03,853 vendor/easel/esl_dsqdata.c:615:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:03,853 615 | n = strlen(sq->name); if (n > max_namelen) max_namelen = n; 2022-12-15T13:21:03,853 | ^ 2022-12-15T13:21:03,854 vendor/easel/esl_dsqdata.c:616:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:03,855 616 | n = strlen(sq->acc); if (n > max_acclen) max_acclen = n; 2022-12-15T13:21:03,855 | ^ 2022-12-15T13:21:03,856 vendor/easel/esl_dsqdata.c:617:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:03,856 617 | n = strlen(sq->desc); if (n > max_desclen) max_desclen = n; 2022-12-15T13:21:03,856 | ^ 2022-12-15T13:21:03,857 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o from vendor/easel/esl_sq.c 2022-12-15T13:21:03,858 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_sq.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o 2022-12-15T13:21:03,861 vendor/easel/esl_dsqdata.c:676:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:03,861 676 | if ( fwrite(psq, sizeof(uint32_t), plen, sfp) != plen) 2022-12-15T13:21:03,862 | ^~ 2022-12-15T13:21:03,863 vendor/easel/esl_dsqdata.c:682:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:03,863 682 | if ( fwrite(sq->name, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:21:03,863 | ^~ 2022-12-15T13:21:03,865 vendor/easel/esl_dsqdata.c:687:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:03,865 687 | if ( fwrite(sq->acc, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:21:03,865 | ^~ 2022-12-15T13:21:03,866 vendor/easel/esl_dsqdata.c:692:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:03,867 692 | if ( fwrite(sq->desc, sizeof(char), n+1, mfp) != n+1) 2022-12-15T13:21:03,867 | ^~ 2022-12-15T13:21:03,909 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o from vendor/easel/esl_composition.c 2022-12-15T13:21:03,910 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_composition.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o 2022-12-15T13:21:03,914 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_unpacker_thread’: 2022-12-15T13:21:03,915 vendor/easel/esl_dsqdata.c:1129:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-15T13:21:03,916 1129 | } 2022-12-15T13:21:03,916 | ^ 2022-12-15T13:21:03,924 vendor/easel/esl_dsqdata.c: In function ‘dsqdata_loader_thread’: 2022-12-15T13:21:03,925 vendor/easel/esl_dsqdata.c:1052:1: warning: control reaches end of non-void function [-Wreturn-type] 2022-12-15T13:21:03,925 1052 | } 2022-12-15T13:21:03,926 | ^ 2022-12-15T13:21:04,094 vendor/easel/esl_sq.c: In function ‘esl_sq_Checksum’: 2022-12-15T13:21:04,095 vendor/easel/esl_sq.c:1636:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-15T13:21:04,096 1636 | for (pos = 0; pos < sq->n; pos++) 2022-12-15T13:21:04,096 | ^ 2022-12-15T13:21:04,096 vendor/easel/esl_sq.c:1645:25: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int64_t’ {aka ‘const long long int’} [-Wsign-compare] 2022-12-15T13:21:04,097 1645 | for (pos = 1; pos <= sq->n; pos++) 2022-12-15T13:21:04,097 | ^~ 2022-12-15T13:21:04,185 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o from vendor/easel/esl_msashuffle.c 2022-12-15T13:21:04,186 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msashuffle.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o 2022-12-15T13:21:04,389 vendor/easel/esl_msashuffle.c: In function ‘esl_msashuffle_CQRNA’: 2022-12-15T13:21:04,390 vendor/easel/esl_msashuffle.c:449:17: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:04,390 449 | if (strlen(y) != L) ESL_XEXCEPTION(eslEINVAL, "sequences of different lengths in qrna shuffle"); 2022-12-15T13:21:04,391 | ^~ 2022-12-15T13:21:05,138 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o from vendor/easel/esl_arr3.c 2022-12-15T13:21:05,139 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr3.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o 2022-12-15T13:21:05,313 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o from vendor/easel/esl_tree.c 2022-12-15T13:21:05,314 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_tree.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o 2022-12-15T13:21:05,433 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o from vendor/easel/esl_cpu.c 2022-12-15T13:21:05,434 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cpu.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o 2022-12-15T13:21:05,662 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o from vendor/easel/esl_json.c 2022-12-15T13:21:05,663 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_json.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o 2022-12-15T13:21:05,914 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o from vendor/easel/esl_histogram.c 2022-12-15T13:21:05,915 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_histogram.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o 2022-12-15T13:21:06,115 vendor/easel/esl_histogram.c: In function ‘esl_histogram_GetRank’: 2022-12-15T13:21:06,115 vendor/easel/esl_histogram.c:541:12: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:06,115 541 | if (rank > h->n) 2022-12-15T13:21:06,116 | ^ 2022-12-15T13:21:06,612 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o from vendor/easel/esl_threads.c 2022-12-15T13:21:06,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_threads.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o 2022-12-15T13:21:06,719 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o from vendor/easel/esl_cluster.c 2022-12-15T13:21:06,720 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_cluster.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o 2022-12-15T13:21:06,883 vendor/easel/esl_cluster.c: In function ‘esl_cluster_SingleLinkage’: 2022-12-15T13:21:06,883 vendor/easel/esl_cluster.c:151:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:06,884 151 | for (v = 0; v < n; v++) a[v] = n-v-1; /* initialize by pushing all vertices onto available list (backwards) */ 2022-12-15T13:21:06,884 | ^ 2022-12-15T13:21:07,013 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o from vendor/easel/esl_msafile_phylip.c 2022-12-15T13:21:07,014 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_msafile_phylip.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o 2022-12-15T13:21:07,582 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o from vendor/easel/esl_arr2.c 2022-12-15T13:21:07,583 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_arr2.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o 2022-12-15T13:21:07,652 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o from vendor/easel/esl_huffman.c 2022-12-15T13:21:07,653 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_huffman.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o 2022-12-15T13:21:07,856 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o from vendor/easel/esl_distance.c 2022-12-15T13:21:07,857 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_distance.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o 2022-12-15T13:21:08,423 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o from vendor/easel/esl_rand64.c 2022-12-15T13:21:08,424 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rand64.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o 2022-12-15T13:21:08,487 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o from vendor/easel/esl_alloc.c 2022-12-15T13:21:08,488 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_alloc.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o 2022-12-15T13:21:08,722 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o from vendor/easel/esl_hyperexp.c 2022-12-15T13:21:08,723 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_hyperexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o 2022-12-15T13:21:09,033 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o from vendor/easel/esl_exponential.c 2022-12-15T13:21:09,035 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_exponential.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o 2022-12-15T13:21:09,101 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o from vendor/easel/esl_mixgev.c 2022-12-15T13:21:09,102 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_mixgev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o 2022-12-15T13:21:09,166 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o from vendor/easel/esl_random.c 2022-12-15T13:21:09,167 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_random.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o 2022-12-15T13:21:09,370 vendor/easel/esl_random.c: In function ‘gamma_integer’: 2022-12-15T13:21:09,370 vendor/easel/esl_random.c:652:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2022-12-15T13:21:09,371 652 | for (i = 0; i < a; i++) 2022-12-15T13:21:09,371 | ^ 2022-12-15T13:21:09,522 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o from vendor/easel/esl_gev.c 2022-12-15T13:21:09,523 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_gev.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o 2022-12-15T13:21:09,967 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o from vendor/easel/esl_ssi.c 2022-12-15T13:21:09,969 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ssi.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o 2022-12-15T13:21:10,046 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o from vendor/easel/esl_regexp.c 2022-12-15T13:21:10,046 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_regexp.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o 2022-12-15T13:21:10,082 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o from vendor/easel/esl_rootfinder.c 2022-12-15T13:21:10,083 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_rootfinder.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o 2022-12-15T13:21:10,162 vendor/easel/esl_ssi.c: In function ‘esl_ssi_FindNumber’: 2022-12-15T13:21:10,163 vendor/easel/esl_ssi.c:261:12: warning: comparison of integer expressions of different signedness: ‘int64_t’ {aka ‘long long int’} and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,163 261 | if (nkey >= ssi->nprimary) { status = eslENOTFOUND; goto ERROR; } 2022-12-15T13:21:10,163 | ^~ 2022-12-15T13:21:10,172 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddFile’: 2022-12-15T13:21:10,173 vendor/easel/esl_ssi.c:728:13: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,173 728 | if ((n+1) > ns->flen) ns->flen = n+1; 2022-12-15T13:21:10,174 | ^ 2022-12-15T13:21:10,177 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddKey’: 2022-12-15T13:21:10,177 vendor/easel/esl_ssi.c:862:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,177 862 | if (n > ns->plen) ns->plen = n; 2022-12-15T13:21:10,178 | ^ 2022-12-15T13:21:10,179 vendor/easel/esl_ssi.c:893:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,180 893 | for (i = ns->nprimary; i < ns->nprimary + eslSSI_KCHUNK; i++) 2022-12-15T13:21:10,180 | ^ 2022-12-15T13:21:10,180 vendor/easel/esl_ssi.c: In function ‘esl_newssi_AddAlias’: 2022-12-15T13:21:10,181 vendor/easel/esl_ssi.c:941:9: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,181 941 | if (n > ns->slen) ns->slen = n; 2022-12-15T13:21:10,181 | ^ 2022-12-15T13:21:10,183 vendor/easel/esl_ssi.c:957:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,183 957 | for (i = ns->nsecondary; i < ns->nsecondary+eslSSI_KCHUNK; i++) { 2022-12-15T13:21:10,184 | ^ 2022-12-15T13:21:10,188 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Write’: 2022-12-15T13:21:10,189 vendor/easel/esl_ssi.c:1149:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,189 1149 | for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:21:10,189 | ^ 2022-12-15T13:21:10,191 vendor/easel/esl_ssi.c:1167:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,191 1167 | for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:21:10,192 | ^ 2022-12-15T13:21:10,193 vendor/easel/esl_ssi.c:1187:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,193 1187 | for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:21:10,193 | ^ 2022-12-15T13:21:10,195 vendor/easel/esl_ssi.c:1204:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,195 1204 | for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:21:10,195 | ^ 2022-12-15T13:21:10,198 vendor/easel/esl_ssi.c: In function ‘esl_newssi_Close’: 2022-12-15T13:21:10,199 vendor/easel/esl_ssi.c:1253:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,199 1253 | for (i = 0; i < ns->nprimary; i++) 2022-12-15T13:21:10,200 | ^ 2022-12-15T13:21:10,201 vendor/easel/esl_ssi.c:1259:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,201 1259 | for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:21:10,201 | ^ 2022-12-15T13:21:10,206 vendor/easel/esl_ssi.c: In function ‘activate_external_sort’: 2022-12-15T13:21:10,207 vendor/easel/esl_ssi.c:1351:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,207 1351 | for (i = 0; i < ns->nprimary; i++) { 2022-12-15T13:21:10,207 | ^ 2022-12-15T13:21:10,208 vendor/easel/esl_ssi.c:1370:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,209 1370 | for (i = 0; i < ns->nsecondary; i++) 2022-12-15T13:21:10,209 | ^ 2022-12-15T13:21:10,210 vendor/easel/esl_ssi.c:1376:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,210 1376 | for (i = 0; i < ns->nprimary; i++) free(ns->pkeys[i].key); 2022-12-15T13:21:10,211 | ^ 2022-12-15T13:21:10,211 vendor/easel/esl_ssi.c:1377:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,212 1377 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].key); 2022-12-15T13:21:10,212 | ^ 2022-12-15T13:21:10,212 vendor/easel/esl_ssi.c:1378:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:10,213 1378 | for (i = 0; i < ns->nsecondary; i++) free(ns->skeys[i].pkey); 2022-12-15T13:21:10,213 | ^ 2022-12-15T13:21:10,219 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o from vendor/easel/esl_heap.c 2022-12-15T13:21:10,220 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_heap.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o 2022-12-15T13:21:10,510 generating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o from build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c 2022-12-15T13:21:10,511 creating build/temp.linux-armv7l-cpython-39/build 2022-12-15T13:21:10,511 creating build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39 2022-12-15T13:21:10,513 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c -o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-12-15T13:21:10,639 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o from vendor/easel/esl_red_black.c 2022-12-15T13:21:10,639 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_red_black.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o 2022-12-15T13:21:10,773 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c: In function ‘sqascii_Echo’: 2022-12-15T13:21:10,774 build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.c:1669:60: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:10,774 1669 | if (fwrite(ascii->buf, sizeof(char), ascii->nc, ofp) != ascii->nc) ESL_EXCEPTION(eslESYS, "fwrite() failed"); 2022-12-15T13:21:10,774 | ^~ 2022-12-15T13:21:10,894 vendor/easel/esl_regexp.c: In function ‘regbranch’: 2022-12-15T13:21:10,895 vendor/easel/esl_regexp.c:804:18: warning: ‘flags’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:21:10,895 804 | *flagp |= flags&HASWIDTH; 2022-12-15T13:21:10,895 | ^ 2022-12-15T13:21:11,967 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o from vendor/easel/esl_stopwatch.c 2022-12-15T13:21:11,968 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_stopwatch.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o 2022-12-15T13:21:12,028 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o from vendor/easel/esl_getopts.c 2022-12-15T13:21:12,029 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_getopts.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o 2022-12-15T13:21:12,132 vendor/easel/esl_stopwatch.c:15:15: warning: ‘stopwatch_getRealTime’ declared ‘static’ but never defined [-Wunused-function] 2022-12-15T13:21:12,133 15 | static double stopwatch_getRealTime(void); 2022-12-15T13:21:12,133 | ^~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:12,224 vendor/easel/esl_getopts.c: In function ‘get_optidx_abbrev’: 2022-12-15T13:21:12,225 vendor/easel/esl_getopts.c:1308:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:12,225 1308 | if (n == strlen(g->opt[i].name)) { nexact++; break; } /* an exact match; can stop now (xref bug #e4) */ 2022-12-15T13:21:12,225 | ^~ 2022-12-15T13:21:12,298 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o from vendor/easel/esl_wuss.c 2022-12-15T13:21:12,299 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_wuss.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o 2022-12-15T13:21:12,578 vendor/easel/esl_wuss.c: In function ‘esl_wuss2ct’: 2022-12-15T13:21:12,579 vendor/easel/esl_wuss.c:136:10: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2022-12-15T13:21:12,579 136 | return status; 2022-12-15T13:21:12,579 | ^~~~~~ 2022-12-15T13:21:13,641 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o from vendor/easel/esl_swat.c 2022-12-15T13:21:13,642 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_swat.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o 2022-12-15T13:21:13,961 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o from vendor/easel/esl_matrixops.c 2022-12-15T13:21:13,962 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_matrixops.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o 2022-12-15T13:21:14,614 generating build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o from vendor/easel/esl_ratematrix.c 2022-12-15T13:21:14,615 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/easel/esl_ratematrix.c -o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o 2022-12-15T13:21:15,200 arm-linux-gnueabihf-gcc-ar rcs build/temp.linux-armv7l-cpython-39/libeasel.a build/temp.linux-armv7l-cpython-39/vendor/easel/interface_lapack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gamma.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msaweight.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_keyhash.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_paml.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_scorematrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio_ncbi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_afa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hmm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_buffer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_graph.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_bitfield.o build/temp.linux-armv7l-cpython-39/vendor/easel/interface_gsl.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gencode.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_a2m.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sqio.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dirichlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mem.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alphabet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_neon.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_minimizer.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_psiblast.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stretchexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stats.o build/temp.linux-armv7l-cpython-39/vendor/easel/easel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_clustal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_fileparser.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msa.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vmx.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_stockholm.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_composition.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msashuffle.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr3.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mpi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msacluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixdchlet.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dmatrix.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_weibull.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_varint.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_recorder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_randomseq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stack.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_subcmd.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_dsqdata.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_histogram.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_avx512.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_workqueue.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gumbel.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_selex.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sq.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_threads.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_sse.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_normal.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_quicksort.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_vectorops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_tree.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rand64.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cpu.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_json.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_huffman.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_alloc.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_hyperexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_rootfinder.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_cluster.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_msafile_phylip.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_exponential.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_gev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_heap.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_red_black.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_arr2.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_distance.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_random.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_regexp.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_stopwatch.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_wuss.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_mixgev.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ssi.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_getopts.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_swat.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_matrixops.o build/temp.linux-armv7l-cpython-39/vendor/easel/esl_ratematrix.o build/temp.linux-armv7l-cpython-39/build/temp.linux-armv7l-cpython-39/esl_sqio_ascii.o 2022-12-15T13:21:15,407 generating build/temp.linux-armv7l-cpython-39/libhmmer.a from vendor/hmmer/src/build.c, vendor/hmmer/src/cachedb.c, vendor/hmmer/src/cachedb_shard.c, vendor/hmmer/src/emit.c, vendor/hmmer/src/errors.c, vendor/hmmer/src/evalues.c, vendor/hmmer/src/eweight.c, vendor/hmmer/src/generic_decoding.c, vendor/hmmer/src/generic_fwdback.c, vendor/hmmer/src/generic_fwdback_chk.c, vendor/hmmer/src/generic_fwdback_banded.c, vendor/hmmer/src/generic_null2.c, vendor/hmmer/src/generic_msv.c, vendor/hmmer/src/generic_optacc.c, vendor/hmmer/src/generic_stotrace.c, vendor/hmmer/src/generic_viterbi.c, vendor/hmmer/src/generic_vtrace.c, vendor/hmmer/src/h2_io.c, vendor/hmmer/src/heatmap.c, vendor/hmmer/src/hmmlogo.c, vendor/hmmer/src/hmmdmstr.c, vendor/hmmer/src/hmmdmstr_shard.c, vendor/hmmer/src/hmmd_search_status.c, vendor/hmmer/src/hmmdwrkr.c, vendor/hmmer/src/hmmdwrkr_shard.c, vendor/hmmer/src/hmmdutils.c, vendor/hmmer/src/hmmer.c, vendor/hmmer/src/logsum.c, vendor/hmmer/src/modelconfig.c, vendor/hmmer/src/modelstats.c, vendor/hmmer/src/mpisupport.c, vendor/hmmer/src/seqmodel.c, vendor/hmmer/src/tracealign.c, vendor/hmmer/src/p7_alidisplay.c, vendor/hmmer/src/p7_bg.c, vendor/hmmer/src/p7_builder.c, vendor/hmmer/src/p7_domain.c, vendor/hmmer/src/p7_domaindef.c, vendor/hmmer/src/p7_gbands.c, vendor/hmmer/src/p7_gmx.c, vendor/hmmer/src/p7_gmxb.c, vendor/hmmer/src/p7_gmxchk.c, vendor/hmmer/src/p7_hit.c, vendor/hmmer/src/p7_hmm.c, vendor/hmmer/src/p7_hmmcache.c, vendor/hmmer/src/p7_hmmd_search_stats.c, vendor/hmmer/src/p7_hmmwindow.c, vendor/hmmer/src/p7_pipeline.c, vendor/hmmer/src/p7_prior.c, vendor/hmmer/src/p7_profile.c, vendor/hmmer/src/p7_spensemble.c, vendor/hmmer/src/p7_tophits.c, vendor/hmmer/src/p7_trace.c, vendor/hmmer/src/p7_scoredata.c, vendor/hmmer/src/hmmpgmd2msa.c, vendor/hmmer/src/fm_alphabet.c, vendor/hmmer/src/fm_general.c, vendor/hmmer/src/fm_sse.c, vendor/hmmer/src/fm_ssv.c, build/temp.linux-armv7l-cpython-39/p7_hmmfile.c 2022-12-15T13:21:15,411 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o from vendor/hmmer/src/build.c 2022-12-15T13:21:15,412 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o from vendor/hmmer/src/generic_fwdback.c 2022-12-15T13:21:15,413 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o from vendor/hmmer/src/errors.c 2022-12-15T13:21:15,413 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o from vendor/hmmer/src/generic_msv.c 2022-12-15T13:21:15,413 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-12-15T13:21:15,413 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-12-15T13:21:15,413 creating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src 2022-12-15T13:21:15,414 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_msv.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_msv.o 2022-12-15T13:21:15,415 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/errors.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/errors.o 2022-12-15T13:21:15,416 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_fwdback.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_fwdback.o 2022-12-15T13:21:15,422 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/build.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/build.o 2022-12-15T13:21:15,628 In file included from vendor/hmmer/src/generic_msv.c:20: 2022-12-15T13:21:15,628 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:15,628 829 | #error "No vector implementation enabled" 2022-12-15T13:21:15,628 | ^~~~~ 2022-12-15T13:21:15,629 In file included from vendor/hmmer/src/errors.c:19: 2022-12-15T13:21:15,629 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:15,629 829 | #error "No vector implementation enabled" 2022-12-15T13:21:15,629 | ^~~~~ 2022-12-15T13:21:15,629 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,630 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:15,630 | ^~~~~~ 2022-12-15T13:21:15,630 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,630 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:15,631 | ^~~~~~ 2022-12-15T13:21:15,631 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,632 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:15,632 | ^~~~~~ 2022-12-15T13:21:15,632 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,633 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:15,633 | ^~~~~~ 2022-12-15T13:21:15,633 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,634 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:15,634 | ^~~~~~~~~~~ 2022-12-15T13:21:15,635 | P7_PROFILE 2022-12-15T13:21:15,641 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,641 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:15,641 | ^~~~~~~~~~~ 2022-12-15T13:21:15,641 | P7_PROFILE 2022-12-15T13:21:15,642 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,642 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:15,643 | ^~~~~~ 2022-12-15T13:21:15,643 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,643 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:15,644 | ^~~~~~ 2022-12-15T13:21:15,644 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,644 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:15,644 | ^~~~~~ 2022-12-15T13:21:15,645 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,645 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:15,646 | ^~~~~~ 2022-12-15T13:21:15,646 In file included from vendor/hmmer/src/generic_fwdback.c:15: 2022-12-15T13:21:15,646 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:15,647 829 | #error "No vector implementation enabled" 2022-12-15T13:21:15,647 | ^~~~~ 2022-12-15T13:21:15,647 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,647 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:15,648 | ^~~~~~~~~~~ 2022-12-15T13:21:15,649 | P7_PROFILE 2022-12-15T13:21:15,649 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,649 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:15,650 | ^~~~~~ 2022-12-15T13:21:15,650 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,650 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:15,650 | ^~~~~~ 2022-12-15T13:21:15,661 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,661 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:15,662 | ^~~~~~ 2022-12-15T13:21:15,662 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,662 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:15,663 | ^~~~~~ 2022-12-15T13:21:15,663 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,663 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:15,664 | ^~~~~~~~~~~ 2022-12-15T13:21:15,665 | P7_PROFILE 2022-12-15T13:21:15,665 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,666 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:15,666 | ^~~~~~~~~~~ 2022-12-15T13:21:15,666 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,666 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:15,666 | ^~~~~~~~~~~ 2022-12-15T13:21:15,667 | P7_PROFILE 2022-12-15T13:21:15,667 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,667 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:15,668 | ^~~~~~~~~~~ 2022-12-15T13:21:15,668 | P7_PROFILE 2022-12-15T13:21:15,668 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,669 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:15,669 | ^~~~~~~~~~~ 2022-12-15T13:21:15,670 | P7_PROFILE 2022-12-15T13:21:15,670 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,681 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:15,681 | ^~~~~~~~~~~ 2022-12-15T13:21:15,682 | P7_PROFILE 2022-12-15T13:21:15,682 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,683 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:15,684 | ^~~~~~~~~~~ 2022-12-15T13:21:15,684 | P7_PROFILE 2022-12-15T13:21:15,684 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,684 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:15,685 | ^~~~~~~~~~~ 2022-12-15T13:21:15,685 | P7_PROFILE 2022-12-15T13:21:15,686 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,687 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:15,687 | ^~~~~~~~~~~ 2022-12-15T13:21:15,687 | P7_PROFILE 2022-12-15T13:21:15,687 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,688 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:15,688 | ^~~~~~~~~~~ 2022-12-15T13:21:15,688 | P7_PROFILE 2022-12-15T13:21:15,688 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,688 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,688 | ^~~~~~~~~~~ 2022-12-15T13:21:15,689 | P7_PROFILE 2022-12-15T13:21:15,689 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,689 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:15,689 | ^~~~~~~~~~~ 2022-12-15T13:21:15,689 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,689 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:15,690 | ^~~~~~~~~~~ 2022-12-15T13:21:15,690 | P7_PROFILE 2022-12-15T13:21:15,690 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,700 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,700 | ^~~~~~ 2022-12-15T13:21:15,701 | P7_GMX 2022-12-15T13:21:15,701 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,702 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:15,702 | ^~~~~~~~~~~ 2022-12-15T13:21:15,703 | P7_PROFILE 2022-12-15T13:21:15,703 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,703 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:15,703 | ^~~~~~~~~~~ 2022-12-15T13:21:15,704 | P7_PROFILE 2022-12-15T13:21:15,704 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,704 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,704 | ^~~~~~ 2022-12-15T13:21:15,704 | P7_GMX 2022-12-15T13:21:15,705 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,713 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:15,713 | ^~~~~~~~~~~ 2022-12-15T13:21:15,714 | P7_PROFILE 2022-12-15T13:21:15,714 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,715 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,715 | ^~~~~~ 2022-12-15T13:21:15,716 | P7_GMX 2022-12-15T13:21:15,716 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,717 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,717 | ^~~~~~~~~~~ 2022-12-15T13:21:15,717 | P7_PROFILE 2022-12-15T13:21:15,717 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,717 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,718 | ^~~~~~ 2022-12-15T13:21:15,718 | P7_GMX 2022-12-15T13:21:15,718 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,719 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,719 | ^~~~~~ 2022-12-15T13:21:15,719 | P7_GMX 2022-12-15T13:21:15,720 In file included from vendor/hmmer/src/build.c:32: 2022-12-15T13:21:15,723 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:15,723 829 | #error "No vector implementation enabled" 2022-12-15T13:21:15,723 | ^~~~~ 2022-12-15T13:21:15,724 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,724 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:15,725 | ^~~~~~~~~~~ 2022-12-15T13:21:15,725 | P7_PROFILE 2022-12-15T13:21:15,725 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,726 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:15,726 | ^~~~~~ 2022-12-15T13:21:15,726 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,727 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,727 | ^~~~~~ 2022-12-15T13:21:15,727 | P7_GMX 2022-12-15T13:21:15,727 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,727 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:15,727 | ^~~~~~ 2022-12-15T13:21:15,727 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,728 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:15,728 | ^~~~~~ 2022-12-15T13:21:15,729 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,729 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:15,730 | ^~~~~~~~~~~ 2022-12-15T13:21:15,730 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:15,730 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:15,731 | ^~~~~~ 2022-12-15T13:21:15,731 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,731 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:15,739 | ^~~~~~~~~~~ 2022-12-15T13:21:15,740 | P7_PROFILE 2022-12-15T13:21:15,740 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,740 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,740 | ^~~~~~ 2022-12-15T13:21:15,740 | P7_GMX 2022-12-15T13:21:15,741 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,743 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:15,743 | ^~~~~~~~~~~ 2022-12-15T13:21:15,744 | P7_PROFILE 2022-12-15T13:21:15,744 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,744 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:15,744 | ^~~~~~~~~~~ 2022-12-15T13:21:15,745 | P7_PROFILE 2022-12-15T13:21:15,745 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,746 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,746 | ^~~~~~ 2022-12-15T13:21:15,746 | P7_GMX 2022-12-15T13:21:15,747 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,747 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:15,747 | ^~~~~~~~~~~ 2022-12-15T13:21:15,747 | P7_PROFILE 2022-12-15T13:21:15,748 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,748 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:15,748 | ^~~~~~~~~~~ 2022-12-15T13:21:15,748 | P7_PROFILE 2022-12-15T13:21:15,749 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,749 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:15,749 | ^~~~~~~~~~~ 2022-12-15T13:21:15,749 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,750 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:15,750 | ^~~~~~~~~~~ 2022-12-15T13:21:15,750 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,750 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:15,751 | ^~~~~~~~~~~ 2022-12-15T13:21:15,751 | P7_PROFILE 2022-12-15T13:21:15,751 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,751 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:15,752 | ^~~~~~~~~~~ 2022-12-15T13:21:15,752 | P7_PROFILE 2022-12-15T13:21:15,752 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,752 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:15,753 | ^~~~~~~~~~~ 2022-12-15T13:21:15,753 | P7_PROFILE 2022-12-15T13:21:15,753 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,754 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:15,754 | ^~~~~~~~~~~ 2022-12-15T13:21:15,754 | P7_PROFILE 2022-12-15T13:21:15,754 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,755 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:15,755 | ^~~~~~~~~~~ 2022-12-15T13:21:15,755 | P7_PROFILE 2022-12-15T13:21:15,755 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,756 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:15,756 | ^~~~~~~~~~~ 2022-12-15T13:21:15,757 | P7_PROFILE 2022-12-15T13:21:15,758 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,758 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:15,759 | ^~~~~~~~~~~ 2022-12-15T13:21:15,759 | P7_PROFILE 2022-12-15T13:21:15,759 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,759 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:15,760 | ^~~~~~~~~~~ 2022-12-15T13:21:15,765 | P7_PROFILE 2022-12-15T13:21:15,766 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,767 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:15,767 | ^~~~~~~~~~~ 2022-12-15T13:21:15,768 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,768 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:15,769 | ^~~~~~~~~~~ 2022-12-15T13:21:15,769 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,769 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:15,771 | ^~~~~~~~~~~ 2022-12-15T13:21:15,775 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,775 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:15,775 | ^~~~~~~~~~~ 2022-12-15T13:21:15,776 | P7_PROFILE 2022-12-15T13:21:15,776 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,776 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,776 | ^~~~~~~~~~~ 2022-12-15T13:21:15,776 | P7_PROFILE 2022-12-15T13:21:15,777 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,777 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:15,777 | ^~~~~~~~~~~ 2022-12-15T13:21:15,777 | P7_PROFILE 2022-12-15T13:21:15,778 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,778 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:15,778 | ^~~~~~~~~~~ 2022-12-15T13:21:15,778 | P7_PROFILE 2022-12-15T13:21:15,778 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,778 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,779 | ^~~~~~ 2022-12-15T13:21:15,779 | P7_GMX 2022-12-15T13:21:15,779 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,779 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:15,779 | ^~~~~~~~~~~ 2022-12-15T13:21:15,780 | P7_PROFILE 2022-12-15T13:21:15,780 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,780 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:15,780 | ^~~~~~~~~~~ 2022-12-15T13:21:15,780 | P7_PROFILE 2022-12-15T13:21:15,781 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,781 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,781 | ^~~~~~~~~~~ 2022-12-15T13:21:15,782 | P7_PROFILE 2022-12-15T13:21:15,782 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,782 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:15,782 | ^~~~~~~~~~~ 2022-12-15T13:21:15,782 | P7_PROFILE 2022-12-15T13:21:15,782 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,782 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,783 | ^~~~~~ 2022-12-15T13:21:15,783 | P7_GMX 2022-12-15T13:21:15,783 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o from vendor/hmmer/src/generic_vtrace.c 2022-12-15T13:21:15,783 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/generic_vtrace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/generic_vtrace.o 2022-12-15T13:21:15,783 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,784 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,784 | ^~~~~~ 2022-12-15T13:21:15,784 | P7_GMX 2022-12-15T13:21:15,784 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,784 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,784 | ^~~~~~ 2022-12-15T13:21:15,785 | P7_GMX 2022-12-15T13:21:15,785 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,785 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,785 | ^~~~~~ 2022-12-15T13:21:15,785 | P7_GMX 2022-12-15T13:21:15,786 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,786 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,786 | ^~~~~~ 2022-12-15T13:21:15,786 | P7_GMX 2022-12-15T13:21:15,787 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,787 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,787 | ^~~~~~ 2022-12-15T13:21:15,788 | P7_GMX 2022-12-15T13:21:15,788 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:15,788 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:15,788 | ^~~~~~ 2022-12-15T13:21:15,788 | P7_GMX 2022-12-15T13:21:15,789 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,789 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:15,789 | ^~~~~~~~~~~ 2022-12-15T13:21:15,789 | P7_PROFILE 2022-12-15T13:21:15,789 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,789 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:15,789 | ^~~~~~~~~~~ 2022-12-15T13:21:15,790 | P7_PROFILE 2022-12-15T13:21:15,790 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,790 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:15,790 | ^~~~~~~~~~~ 2022-12-15T13:21:15,790 | P7_PROFILE 2022-12-15T13:21:15,794 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,795 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:15,795 | ^~~~~~~~~~~ 2022-12-15T13:21:15,795 | P7_PROFILE 2022-12-15T13:21:15,795 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,796 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:15,796 | ^~~~~~~~~~~ 2022-12-15T13:21:15,796 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,796 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:15,796 | ^~~~~~~~~~~ 2022-12-15T13:21:15,796 | P7_PROFILE 2022-12-15T13:21:15,797 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,797 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:15,797 | ^~~~~~~~~~~ 2022-12-15T13:21:15,797 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,797 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:15,797 | ^~~~~~~~~~~ 2022-12-15T13:21:15,797 | P7_PROFILE 2022-12-15T13:21:15,797 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,798 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:15,798 | ^~~~~~~~~~~ 2022-12-15T13:21:15,798 | P7_PROFILE 2022-12-15T13:21:15,798 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,798 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:15,798 | ^~~~~~~~~~~ 2022-12-15T13:21:15,798 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:15,799 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:15,799 | ^~~~~~~~~~~ 2022-12-15T13:21:15,799 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,799 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:15,799 | ^~~~~~~~~~~ 2022-12-15T13:21:15,799 | P7_PROFILE 2022-12-15T13:21:15,799 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,799 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:15,800 | ^~~~~~~~~~~ 2022-12-15T13:21:15,800 | P7_PROFILE 2022-12-15T13:21:15,800 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o from vendor/hmmer/src/hmmdmstr.c 2022-12-15T13:21:15,800 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr.o 2022-12-15T13:21:15,800 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,801 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:15,801 | ^~~~~~~~~~~ 2022-12-15T13:21:15,801 | P7_PROFILE 2022-12-15T13:21:15,801 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,801 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:15,801 | ^~~~~~~~~~~ 2022-12-15T13:21:15,802 | P7_PROFILE 2022-12-15T13:21:15,802 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:15,802 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:15,802 | ^~~~~~~~~~~ 2022-12-15T13:21:15,803 | P7_PROFILE 2022-12-15T13:21:15,803 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o from vendor/hmmer/src/hmmdwrkr_shard.c 2022-12-15T13:21:15,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdwrkr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdwrkr_shard.o 2022-12-15T13:21:15,803 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o from vendor/hmmer/src/modelconfig.c 2022-12-15T13:21:15,803 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/modelconfig.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/modelconfig.o 2022-12-15T13:21:15,876 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o from vendor/hmmer/src/hmmdmstr_shard.c 2022-12-15T13:21:15,877 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdmstr_shard.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdmstr_shard.o 2022-12-15T13:21:15,877 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o from vendor/hmmer/src/hmmdutils.c 2022-12-15T13:21:15,878 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmdutils.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmdutils.o 2022-12-15T13:21:15,977 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o from vendor/hmmer/src/hmmd_search_status.c 2022-12-15T13:21:15,977 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmd_search_status.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmd_search_status.o 2022-12-15T13:21:15,979 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o from vendor/hmmer/src/hmmer.c 2022-12-15T13:21:15,986 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/hmmer.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/hmmer.o 2022-12-15T13:21:16,020 In file included from vendor/hmmer/src/generic_vtrace.c:14: 2022-12-15T13:21:16,020 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,020 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,020 | ^~~~~ 2022-12-15T13:21:16,021 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,022 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,022 | ^~~~~~ 2022-12-15T13:21:16,022 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,022 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,023 | ^~~~~~ 2022-12-15T13:21:16,023 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,023 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,024 | ^~~~~~ 2022-12-15T13:21:16,024 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,025 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,025 | ^~~~~~ 2022-12-15T13:21:16,026 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,026 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,027 | ^~~~~~~~~~~ 2022-12-15T13:21:16,027 | P7_PROFILE 2022-12-15T13:21:16,028 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,029 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,029 | ^~~~~~~~~~~ 2022-12-15T13:21:16,029 | P7_PROFILE 2022-12-15T13:21:16,031 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,031 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,032 | ^~~~~~~~~~~ 2022-12-15T13:21:16,032 | P7_PROFILE 2022-12-15T13:21:16,041 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,041 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,042 | ^~~~~~~~~~~ 2022-12-15T13:21:16,042 | P7_PROFILE 2022-12-15T13:21:16,042 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,042 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,042 | ^~~~~~~~~~~ 2022-12-15T13:21:16,042 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,043 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,043 | ^~~~~~~~~~~ 2022-12-15T13:21:16,043 | P7_PROFILE 2022-12-15T13:21:16,061 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,061 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,061 | ^~~~~~~~~~~ 2022-12-15T13:21:16,062 | P7_PROFILE 2022-12-15T13:21:16,062 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,062 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,062 | ^~~~~~~~~~~ 2022-12-15T13:21:16,063 | P7_PROFILE 2022-12-15T13:21:16,063 In file included from vendor/hmmer/src/modelconfig.c:25: 2022-12-15T13:21:16,063 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,063 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,063 | ^~~~~ 2022-12-15T13:21:16,064 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,064 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,064 | ^~~~~~ 2022-12-15T13:21:16,064 | P7_GMX 2022-12-15T13:21:16,064 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,065 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,065 | ^~~~~~ 2022-12-15T13:21:16,065 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,065 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,066 | ^~~~~~ 2022-12-15T13:21:16,066 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,066 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,067 | ^~~~~~ 2022-12-15T13:21:16,067 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,067 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,067 | ^~~~~~ 2022-12-15T13:21:16,067 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,068 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,068 | ^~~~~~ 2022-12-15T13:21:16,068 | P7_GMX 2022-12-15T13:21:16,069 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,069 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,069 | ^~~~~~~~~~~ 2022-12-15T13:21:16,070 | P7_PROFILE 2022-12-15T13:21:16,070 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,070 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,070 | ^~~~~~ 2022-12-15T13:21:16,070 | P7_GMX 2022-12-15T13:21:16,071 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,071 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,071 | ^~~~~~~~~~~ 2022-12-15T13:21:16,072 | P7_PROFILE 2022-12-15T13:21:16,072 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,072 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,073 | ^~~~~~ 2022-12-15T13:21:16,073 | P7_GMX 2022-12-15T13:21:16,073 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,073 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,074 | ^~~~~~~~~~~ 2022-12-15T13:21:16,074 | P7_PROFILE 2022-12-15T13:21:16,074 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,075 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,075 | ^~~~~~~~~~~ 2022-12-15T13:21:16,075 | P7_PROFILE 2022-12-15T13:21:16,076 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,076 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,076 | ^~~~~~~~~~~ 2022-12-15T13:21:16,076 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,076 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,076 | ^~~~~~~~~~~ 2022-12-15T13:21:16,077 | P7_PROFILE 2022-12-15T13:21:16,077 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,077 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,078 | ^~~~~~~~~~~ 2022-12-15T13:21:16,078 | P7_PROFILE 2022-12-15T13:21:16,078 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,078 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,079 | ^~~~~~~~~~~ 2022-12-15T13:21:16,079 | P7_PROFILE 2022-12-15T13:21:16,079 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,080 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,080 | ^~~~~~ 2022-12-15T13:21:16,091 | P7_GMX 2022-12-15T13:21:16,091 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,091 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,091 | ^~~~~~ 2022-12-15T13:21:16,092 | P7_GMX 2022-12-15T13:21:16,092 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,092 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,093 | ^~~~~~ 2022-12-15T13:21:16,093 | P7_GMX 2022-12-15T13:21:16,093 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,094 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,094 | ^~~~~~~~~~~ 2022-12-15T13:21:16,094 | P7_PROFILE 2022-12-15T13:21:16,094 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,095 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,095 | ^~~~~~ 2022-12-15T13:21:16,095 | P7_GMX 2022-12-15T13:21:16,095 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,095 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,096 | ^~~~~~~~~~~ 2022-12-15T13:21:16,096 | P7_PROFILE 2022-12-15T13:21:16,096 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,096 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,097 | ^~~~~~~~~~~ 2022-12-15T13:21:16,097 | P7_PROFILE 2022-12-15T13:21:16,097 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,098 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,098 | ^~~~~~~~~~~ 2022-12-15T13:21:16,098 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,098 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,099 | ^~~~~~~~~~~ 2022-12-15T13:21:16,099 | P7_PROFILE 2022-12-15T13:21:16,099 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,099 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,100 | ^~~~~~~~~~~ 2022-12-15T13:21:16,100 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,111 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,111 | ^~~~~~~~~~~ 2022-12-15T13:21:16,111 | P7_PROFILE 2022-12-15T13:21:16,112 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,112 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,112 | ^~~~~~~~~~~ 2022-12-15T13:21:16,112 | P7_PROFILE 2022-12-15T13:21:16,113 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,113 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,113 | ^~~~~~~~~~~ 2022-12-15T13:21:16,113 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,114 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,114 | ^~~~~~~~~~~ 2022-12-15T13:21:16,114 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,114 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,115 | ^~~~~~~~~~~ 2022-12-15T13:21:16,115 | P7_PROFILE 2022-12-15T13:21:16,115 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,115 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,116 | ^~~~~~~~~~~ 2022-12-15T13:21:16,116 | P7_PROFILE 2022-12-15T13:21:16,116 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,116 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,117 | ^~~~~~~~~~~ 2022-12-15T13:21:16,117 | P7_PROFILE 2022-12-15T13:21:16,117 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,117 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,118 | ^~~~~~~~~~~ 2022-12-15T13:21:16,119 | P7_PROFILE 2022-12-15T13:21:16,119 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,120 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,120 | ^~~~~~~~~~~ 2022-12-15T13:21:16,120 | P7_PROFILE 2022-12-15T13:21:16,122 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,122 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,122 | ^~~~~~~~~~~ 2022-12-15T13:21:16,122 | P7_PROFILE 2022-12-15T13:21:16,137 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o from vendor/hmmer/src/tracealign.c 2022-12-15T13:21:16,137 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/tracealign.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/tracealign.o 2022-12-15T13:21:16,153 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o from vendor/hmmer/src/p7_domain.c 2022-12-15T13:21:16,154 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_domain.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_domain.o 2022-12-15T13:21:16,218 In file included from vendor/hmmer/src/hmmer.c:18: 2022-12-15T13:21:16,218 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,218 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,219 | ^~~~~ 2022-12-15T13:21:16,219 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,220 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,220 | ^~~~~~ 2022-12-15T13:21:16,220 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,220 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,221 | ^~~~~~ 2022-12-15T13:21:16,221 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,221 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,221 | ^~~~~~ 2022-12-15T13:21:16,222 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,222 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,222 | ^~~~~~ 2022-12-15T13:21:16,224 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,225 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,225 | ^~~~~~~~~~~ 2022-12-15T13:21:16,226 | P7_PROFILE 2022-12-15T13:21:16,227 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,228 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,228 | ^~~~~~~~~~~ 2022-12-15T13:21:16,228 | P7_PROFILE 2022-12-15T13:21:16,230 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,230 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,231 | ^~~~~~~~~~~ 2022-12-15T13:21:16,231 | P7_PROFILE 2022-12-15T13:21:16,232 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,233 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,233 | ^~~~~~~~~~~ 2022-12-15T13:21:16,233 | P7_PROFILE 2022-12-15T13:21:16,235 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,236 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,236 | ^~~~~~~~~~~ 2022-12-15T13:21:16,239 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,240 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,240 | ^~~~~~~~~~~ 2022-12-15T13:21:16,240 | P7_PROFILE 2022-12-15T13:21:16,241 In file included from vendor/hmmer/src/hmmd_search_status.c:18: 2022-12-15T13:21:16,242 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,242 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,242 | ^~~~~ 2022-12-15T13:21:16,243 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,243 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,243 | ^~~~~~~~~~~ 2022-12-15T13:21:16,244 | P7_PROFILE 2022-12-15T13:21:16,244 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,244 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,245 | ^~~~~~ 2022-12-15T13:21:16,245 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,245 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,245 | ^~~~~~ 2022-12-15T13:21:16,245 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,246 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,247 | ^~~~~~ 2022-12-15T13:21:16,247 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,247 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,248 | ^~~~~~ 2022-12-15T13:21:16,248 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,248 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,248 | ^~~~~~~~~~~ 2022-12-15T13:21:16,249 | P7_PROFILE 2022-12-15T13:21:16,249 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,250 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,250 | ^~~~~~~~~~~ 2022-12-15T13:21:16,251 | P7_PROFILE 2022-12-15T13:21:16,256 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,256 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,257 | ^~~~~~ 2022-12-15T13:21:16,257 | P7_GMX 2022-12-15T13:21:16,257 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,257 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,258 | ^~~~~~~~~~~ 2022-12-15T13:21:16,258 | P7_PROFILE 2022-12-15T13:21:16,258 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,258 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,258 | ^~~~~~ 2022-12-15T13:21:16,259 | P7_GMX 2022-12-15T13:21:16,259 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,259 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,259 | ^~~~~~~~~~~ 2022-12-15T13:21:16,259 | P7_PROFILE 2022-12-15T13:21:16,260 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,260 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,263 | ^~~~~~ 2022-12-15T13:21:16,267 | P7_GMX 2022-12-15T13:21:16,269 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,269 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,270 | ^~~~~~~~~~~ 2022-12-15T13:21:16,270 | P7_PROFILE 2022-12-15T13:21:16,270 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,270 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,270 | ^~~~~~ 2022-12-15T13:21:16,271 | P7_GMX 2022-12-15T13:21:16,272 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,272 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,272 | ^~~~~~~~~~~ 2022-12-15T13:21:16,273 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,273 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,273 | ^~~~~~~~~~~ 2022-12-15T13:21:16,273 | P7_PROFILE 2022-12-15T13:21:16,273 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,274 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,274 | ^~~~~~~~~~~ 2022-12-15T13:21:16,274 | P7_PROFILE 2022-12-15T13:21:16,275 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,275 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,276 | ^~~~~~~~~~~ 2022-12-15T13:21:16,276 | P7_PROFILE 2022-12-15T13:21:16,276 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,276 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,276 | ^~~~~~~~~~~ 2022-12-15T13:21:16,277 | P7_PROFILE 2022-12-15T13:21:16,277 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,277 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,278 | ^~~~~~~~~~~ 2022-12-15T13:21:16,278 | P7_PROFILE 2022-12-15T13:21:16,278 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,278 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,279 | ^~~~~~~~~~~ 2022-12-15T13:21:16,279 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,279 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,279 | ^~~~~~~~~~~ 2022-12-15T13:21:16,279 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,280 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,280 | ^~~~~~~~~~~ 2022-12-15T13:21:16,283 | P7_PROFILE 2022-12-15T13:21:16,291 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,292 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,292 | ^~~~~~~~~~~ 2022-12-15T13:21:16,293 | P7_PROFILE 2022-12-15T13:21:16,293 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,293 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,294 | ^~~~~~ 2022-12-15T13:21:16,294 | P7_GMX 2022-12-15T13:21:16,294 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,294 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,294 | ^~~~~~ 2022-12-15T13:21:16,295 | P7_GMX 2022-12-15T13:21:16,295 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,295 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,295 | ^~~~~~~~~~~ 2022-12-15T13:21:16,295 | P7_PROFILE 2022-12-15T13:21:16,296 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,301 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,301 | ^~~~~~ 2022-12-15T13:21:16,301 | P7_GMX 2022-12-15T13:21:16,301 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,302 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,302 | ^~~~~~ 2022-12-15T13:21:16,302 | P7_GMX 2022-12-15T13:21:16,302 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,303 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,303 | ^~~~~~~~~~~ 2022-12-15T13:21:16,303 | P7_PROFILE 2022-12-15T13:21:16,303 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,303 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,303 | ^~~~~~~~~~~ 2022-12-15T13:21:16,304 | P7_PROFILE 2022-12-15T13:21:16,304 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,304 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,304 | ^~~~~~~~~~~ 2022-12-15T13:21:16,304 | P7_PROFILE 2022-12-15T13:21:16,305 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,305 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,306 | ^~~~~~~~~~~ 2022-12-15T13:21:16,306 | P7_PROFILE 2022-12-15T13:21:16,307 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,307 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,307 | ^~~~~~~~~~~ 2022-12-15T13:21:16,307 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,307 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,308 | ^~~~~~~~~~~ 2022-12-15T13:21:16,308 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o from vendor/hmmer/src/p7_gmxb.c 2022-12-15T13:21:16,308 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_gmxb.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_gmxb.o 2022-12-15T13:21:16,308 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,309 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,309 | ^~~~~~~~~~~ 2022-12-15T13:21:16,309 | P7_PROFILE 2022-12-15T13:21:16,309 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,310 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,310 | ^~~~~~~~~~~ 2022-12-15T13:21:16,310 | P7_PROFILE 2022-12-15T13:21:16,310 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,311 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,311 | ^~~~~~~~~~~ 2022-12-15T13:21:16,311 | P7_PROFILE 2022-12-15T13:21:16,334 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o from vendor/hmmer/src/p7_hmmcache.c 2022-12-15T13:21:16,336 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_hmmcache.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_hmmcache.o 2022-12-15T13:21:16,365 In file included from vendor/hmmer/src/tracealign.c:15: 2022-12-15T13:21:16,365 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,365 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,366 | ^~~~~ 2022-12-15T13:21:16,366 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,367 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,367 | ^~~~~~ 2022-12-15T13:21:16,367 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,368 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,368 | ^~~~~~ 2022-12-15T13:21:16,368 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,368 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,369 | ^~~~~~ 2022-12-15T13:21:16,369 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,370 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,370 | ^~~~~~ 2022-12-15T13:21:16,371 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,372 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,372 | ^~~~~~~~~~~ 2022-12-15T13:21:16,372 | P7_PROFILE 2022-12-15T13:21:16,373 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,374 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,374 | ^~~~~~~~~~~ 2022-12-15T13:21:16,375 | P7_PROFILE 2022-12-15T13:21:16,377 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,377 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,378 | ^~~~~~~~~~~ 2022-12-15T13:21:16,378 | P7_PROFILE 2022-12-15T13:21:16,378 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,379 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,379 | ^~~~~~~~~~~ 2022-12-15T13:21:16,379 | P7_PROFILE 2022-12-15T13:21:16,380 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,381 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,381 | ^~~~~~~~~~~ 2022-12-15T13:21:16,384 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,385 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,385 | ^~~~~~~~~~~ 2022-12-15T13:21:16,385 | P7_PROFILE 2022-12-15T13:21:16,387 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,387 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,388 | ^~~~~~~~~~~ 2022-12-15T13:21:16,388 | P7_PROFILE 2022-12-15T13:21:16,390 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,390 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,391 | ^~~~~~~~~~~ 2022-12-15T13:21:16,391 | P7_PROFILE 2022-12-15T13:21:16,393 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,393 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,394 | ^~~~~~ 2022-12-15T13:21:16,395 | P7_GMX 2022-12-15T13:21:16,395 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,396 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,399 | ^~~~~~ 2022-12-15T13:21:16,399 | P7_GMX 2022-12-15T13:21:16,400 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,400 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,402 | ^~~~~~ 2022-12-15T13:21:16,402 | P7_GMX 2022-12-15T13:21:16,403 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,405 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,406 | ^~~~~~ 2022-12-15T13:21:16,407 | P7_GMX 2022-12-15T13:21:16,407 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,409 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,409 | ^~~~~~~~~~~ 2022-12-15T13:21:16,410 | P7_PROFILE 2022-12-15T13:21:16,411 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,411 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,411 | ^~~~~~~~~~~ 2022-12-15T13:21:16,412 | P7_PROFILE 2022-12-15T13:21:16,412 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,413 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,413 | ^~~~~~~~~~~ 2022-12-15T13:21:16,413 | P7_PROFILE 2022-12-15T13:21:16,414 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,414 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,414 | ^~~~~~~~~~~ 2022-12-15T13:21:16,415 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,415 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,415 | ^~~~~~~~~~~ 2022-12-15T13:21:16,419 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,420 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,421 | ^~~~~~~~~~~ 2022-12-15T13:21:16,421 | P7_PROFILE 2022-12-15T13:21:16,422 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,423 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,423 | ^~~~~~~~~~~ 2022-12-15T13:21:16,424 | P7_PROFILE 2022-12-15T13:21:16,427 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,428 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,428 | ^~~~~~~~~~~ 2022-12-15T13:21:16,428 | P7_PROFILE 2022-12-15T13:21:16,434 vendor/hmmer/src/tracealign.c: In function ‘p7_tracealign_computeTraces’: 2022-12-15T13:21:16,435 vendor/hmmer/src/tracealign.c:239:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,435 239 | P7_OMX *oxf = NULL; /* optimized Forward matrix */ 2022-12-15T13:21:16,436 | ^~~~~~ 2022-12-15T13:21:16,436 | P7_GMX 2022-12-15T13:21:16,436 vendor/hmmer/src/tracealign.c:240:3: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,437 240 | P7_OMX *oxb = NULL; /* optimized Backward matrix */ 2022-12-15T13:21:16,437 | ^~~~~~ 2022-12-15T13:21:16,438 | P7_GMX 2022-12-15T13:21:16,439 vendor/hmmer/src/tracealign.c:244:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,439 244 | P7_OPROFILE *om = NULL; 2022-12-15T13:21:16,440 | ^~~~~~~~~~~ 2022-12-15T13:21:16,440 | P7_PROFILE 2022-12-15T13:21:16,441 vendor/hmmer/src/tracealign.c:255:8: warning: implicit declaration of function ‘p7_oprofile_Create’; did you mean ‘p7_profile_Create’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,442 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-15T13:21:16,442 | ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,442 | p7_profile_Create 2022-12-15T13:21:16,442 vendor/hmmer/src/tracealign.c:255:6: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:21:16,443 255 | om = p7_oprofile_Create(hmm->M, hmm->abc); 2022-12-15T13:21:16,443 | ^ 2022-12-15T13:21:16,446 vendor/hmmer/src/tracealign.c:258:3: warning: implicit declaration of function ‘p7_oprofile_Convert’; did you mean ‘p7_profile_Compare’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,446 258 | p7_oprofile_Convert(gm, om); 2022-12-15T13:21:16,447 | ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,447 | p7_profile_Compare 2022-12-15T13:21:16,448 vendor/hmmer/src/tracealign.c:261:9: warning: implicit declaration of function ‘p7_omx_Create’; did you mean ‘p7_gmx_Create’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,448 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:21:16,449 | ^~~~~~~~~~~~~ 2022-12-15T13:21:16,449 | p7_gmx_Create 2022-12-15T13:21:16,450 vendor/hmmer/src/tracealign.c:261:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:21:16,450 261 | oxf = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:21:16,451 | ^ 2022-12-15T13:21:16,451 vendor/hmmer/src/tracealign.c:262:7: warning: assignment to ‘int *’ from ‘int’ makes pointer from integer without a cast [-Wint-conversion] 2022-12-15T13:21:16,451 262 | oxb = p7_omx_Create(hmm->M, sq[offset]->n, sq[offset]->n); 2022-12-15T13:21:16,451 | ^ 2022-12-15T13:21:16,452 vendor/hmmer/src/tracealign.c:271:5: warning: implicit declaration of function ‘p7_omx_GrowTo’; did you mean ‘p7_gmx_GrowTo’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,452 271 | p7_omx_GrowTo(oxf, hmm->M, sq[idx]->n, sq[idx]->n); 2022-12-15T13:21:16,452 | ^~~~~~~~~~~~~ 2022-12-15T13:21:16,452 | p7_gmx_GrowTo 2022-12-15T13:21:16,456 vendor/hmmer/src/tracealign.c:274:5: warning: implicit declaration of function ‘p7_oprofile_ReconfigLength’; did you mean ‘p7_ReconfigLength’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,456 274 | p7_oprofile_ReconfigLength(om, sq[idx]->n); 2022-12-15T13:21:16,457 | ^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,457 | p7_ReconfigLength 2022-12-15T13:21:16,458 vendor/hmmer/src/tracealign.c:276:5: warning: implicit declaration of function ‘p7_Forward’; did you mean ‘p7_GForward’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,458 276 | p7_Forward (sq[idx]->dsq, sq[idx]->n, om, oxf, &fwdsc); 2022-12-15T13:21:16,459 | ^~~~~~~~~~ 2022-12-15T13:21:16,460 | p7_GForward 2022-12-15T13:21:16,461 vendor/hmmer/src/tracealign.c:277:5: warning: implicit declaration of function ‘p7_Backward’; did you mean ‘p7_GBackward’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,461 277 | p7_Backward(sq[idx]->dsq, sq[idx]->n, om, oxf, oxb, NULL); 2022-12-15T13:21:16,462 | ^~~~~~~~~~~ 2022-12-15T13:21:16,462 | p7_GBackward 2022-12-15T13:21:16,463 vendor/hmmer/src/tracealign.c:279:14: warning: implicit declaration of function ‘p7_Decoding’; did you mean ‘p7_GDecoding’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,464 279 | status = p7_Decoding(om, oxf, oxb, oxb); /* is now overwritten with post probabilities */ 2022-12-15T13:21:16,464 | ^~~~~~~~~~~ 2022-12-15T13:21:16,464 | p7_GDecoding 2022-12-15T13:21:16,466 vendor/hmmer/src/tracealign.c:283:9: warning: implicit declaration of function ‘p7_OptimalAccuracy’; did you mean ‘p7_GOptimalAccuracy’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,467 283 | p7_OptimalAccuracy(om, oxb, oxf, &oasc); /* is now overwritten with OA scores */ 2022-12-15T13:21:16,467 | ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,468 | p7_GOptimalAccuracy 2022-12-15T13:21:16,469 vendor/hmmer/src/tracealign.c:284:9: warning: implicit declaration of function ‘p7_OATrace’; did you mean ‘p7_GOATrace’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,469 284 | p7_OATrace (om, oxb, oxf, tr[idx]); /* tr[idx] is now an OA traceback for seq #idx */ 2022-12-15T13:21:16,469 | ^~~~~~~~~~ 2022-12-15T13:21:16,470 | p7_GOATrace 2022-12-15T13:21:16,472 vendor/hmmer/src/tracealign.c:346:5: warning: implicit declaration of function ‘p7_omx_Reuse’; did you mean ‘p7_gmx_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,473 346 | p7_omx_Reuse(oxf); 2022-12-15T13:21:16,473 | ^~~~~~~~~~~~ 2022-12-15T13:21:16,474 | p7_gmx_Reuse 2022-12-15T13:21:16,475 vendor/hmmer/src/tracealign.c:357:3: warning: implicit declaration of function ‘p7_omx_Destroy’; did you mean ‘p7_gmx_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,475 357 | p7_omx_Destroy(oxf); 2022-12-15T13:21:16,475 | ^~~~~~~~~~~~~~ 2022-12-15T13:21:16,476 | p7_gmx_Destroy 2022-12-15T13:21:16,477 vendor/hmmer/src/tracealign.c:363:3: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,478 363 | p7_oprofile_Destroy(om); 2022-12-15T13:21:16,478 | ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,478 | p7_profile_Destroy 2022-12-15T13:21:16,515 In file included from vendor/hmmer/src/p7_domain.c:16: 2022-12-15T13:21:16,515 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,516 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,516 | ^~~~~ 2022-12-15T13:21:16,517 In file included from vendor/hmmer/src/p7_gmxb.c:4: 2022-12-15T13:21:16,517 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,517 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,518 | ^~~~~ 2022-12-15T13:21:16,518 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,519 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,519 | ^~~~~~ 2022-12-15T13:21:16,519 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,519 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,520 | ^~~~~~ 2022-12-15T13:21:16,520 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,520 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,521 | ^~~~~~ 2022-12-15T13:21:16,521 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,521 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,522 | ^~~~~~ 2022-12-15T13:21:16,523 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,523 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,524 | ^~~~~~~~~~~ 2022-12-15T13:21:16,524 | P7_PROFILE 2022-12-15T13:21:16,527 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,527 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,527 | ^~~~~~ 2022-12-15T13:21:16,528 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,528 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,529 | ^~~~~~ 2022-12-15T13:21:16,529 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,529 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,530 | ^~~~~~ 2022-12-15T13:21:16,530 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,530 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,530 | ^~~~~~~~~~~ 2022-12-15T13:21:16,530 | P7_PROFILE 2022-12-15T13:21:16,531 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,531 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,531 | ^~~~~~ 2022-12-15T13:21:16,531 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,531 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,532 | ^~~~~~~~~~~ 2022-12-15T13:21:16,532 | P7_PROFILE 2022-12-15T13:21:16,532 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,532 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,532 | ^~~~~~~~~~~ 2022-12-15T13:21:16,533 | P7_PROFILE 2022-12-15T13:21:16,533 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,533 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,534 | ^~~~~~~~~~~ 2022-12-15T13:21:16,536 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o from vendor/hmmer/src/p7_prior.c 2022-12-15T13:21:16,536 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,537 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,537 | ^~~~~~~~~~~ 2022-12-15T13:21:16,538 | P7_PROFILE 2022-12-15T13:21:16,538 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_prior.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_prior.o 2022-12-15T13:21:16,539 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,539 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,540 | ^~~~~~~~~~~ 2022-12-15T13:21:16,540 | P7_PROFILE 2022-12-15T13:21:16,541 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,542 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,543 | ^~~~~~~~~~~ 2022-12-15T13:21:16,543 | P7_PROFILE 2022-12-15T13:21:16,544 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,544 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,545 | ^~~~~~~~~~~ 2022-12-15T13:21:16,545 | P7_PROFILE 2022-12-15T13:21:16,546 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,546 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,546 | ^~~~~~~~~~~ 2022-12-15T13:21:16,547 | P7_PROFILE 2022-12-15T13:21:16,547 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,547 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,547 | ^~~~~~~~~~~ 2022-12-15T13:21:16,548 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,549 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,549 | ^~~~~~~~~~~ 2022-12-15T13:21:16,550 | P7_PROFILE 2022-12-15T13:21:16,556 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,556 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,556 | ^~~~~~~~~~~ 2022-12-15T13:21:16,556 | P7_PROFILE 2022-12-15T13:21:16,556 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,557 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,557 | ^~~~~~~~~~~ 2022-12-15T13:21:16,557 | P7_PROFILE 2022-12-15T13:21:16,558 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,559 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,559 | ^~~~~~~~~~~ 2022-12-15T13:21:16,559 | P7_PROFILE 2022-12-15T13:21:16,559 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,561 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,562 | ^~~~~~ 2022-12-15T13:21:16,562 | P7_GMX 2022-12-15T13:21:16,563 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,563 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,563 | ^~~~~~ 2022-12-15T13:21:16,563 | P7_GMX 2022-12-15T13:21:16,566 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,567 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,568 | ^~~~~~~~~~~ 2022-12-15T13:21:16,570 | P7_PROFILE 2022-12-15T13:21:16,572 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,573 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,574 | ^~~~~~ 2022-12-15T13:21:16,574 | P7_GMX 2022-12-15T13:21:16,575 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,575 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,575 | ^~~~~~ 2022-12-15T13:21:16,575 | P7_GMX 2022-12-15T13:21:16,575 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,576 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,576 | ^~~~~~ 2022-12-15T13:21:16,577 | P7_GMX 2022-12-15T13:21:16,577 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,578 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,578 | ^~~~~~ 2022-12-15T13:21:16,578 | P7_GMX 2022-12-15T13:21:16,578 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,579 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,579 | ^~~~~~ 2022-12-15T13:21:16,580 | P7_GMX 2022-12-15T13:21:16,580 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,580 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,581 | ^~~~~~~~~~~ 2022-12-15T13:21:16,581 | P7_PROFILE 2022-12-15T13:21:16,582 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,582 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,582 | ^~~~~~ 2022-12-15T13:21:16,582 | P7_GMX 2022-12-15T13:21:16,583 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,583 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,583 | ^~~~~~~~~~~ 2022-12-15T13:21:16,584 | P7_PROFILE 2022-12-15T13:21:16,584 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,584 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,585 | ^~~~~~~~~~~ 2022-12-15T13:21:16,585 | P7_PROFILE 2022-12-15T13:21:16,586 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,586 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,587 | ^~~~~~~~~~~ 2022-12-15T13:21:16,587 | P7_PROFILE 2022-12-15T13:21:16,587 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,587 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,587 | ^~~~~~~~~~~ 2022-12-15T13:21:16,587 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,588 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,588 | ^~~~~~~~~~~ 2022-12-15T13:21:16,588 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,589 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,589 | ^~~~~~~~~~~ 2022-12-15T13:21:16,589 | P7_PROFILE 2022-12-15T13:21:16,589 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,590 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,590 | ^~~~~~~~~~~ 2022-12-15T13:21:16,591 | P7_PROFILE 2022-12-15T13:21:16,591 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,592 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,592 | ^~~~~~~~~~~ 2022-12-15T13:21:16,593 | P7_PROFILE 2022-12-15T13:21:16,593 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,594 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,594 | ^~~~~~~~~~~ 2022-12-15T13:21:16,595 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,595 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,595 | ^~~~~~~~~~~ 2022-12-15T13:21:16,596 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,596 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,596 | ^~~~~~~~~~~ 2022-12-15T13:21:16,597 | P7_PROFILE 2022-12-15T13:21:16,597 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,597 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,598 | ^~~~~~~~~~~ 2022-12-15T13:21:16,599 | P7_PROFILE 2022-12-15T13:21:16,599 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,600 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,600 | ^~~~~~~~~~~ 2022-12-15T13:21:16,600 | P7_PROFILE 2022-12-15T13:21:16,601 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,601 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,601 | ^~~~~~~~~~~ 2022-12-15T13:21:16,601 | P7_PROFILE 2022-12-15T13:21:16,602 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,602 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,602 | ^~~~~~~~~~~ 2022-12-15T13:21:16,602 | P7_PROFILE 2022-12-15T13:21:16,605 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Serialize’: 2022-12-15T13:21:16,610 vendor/hmmer/src/p7_domain.c:191:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,610 191 | network_32bit = esl_hton32(*((uint32_t *) &(obj->envsc))); // ow, this hurts, but is probably the best way to get the 2022-12-15T13:21:16,610 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,611 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o from vendor/hmmer/src/p7_trace.c 2022-12-15T13:21:16,611 vendor/hmmer/src/p7_domain.c:198:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,611 198 | network_32bit = esl_hton32(*((uint32_t *) &(obj->domcorrection))); 2022-12-15T13:21:16,611 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,611 vendor/hmmer/src/p7_domain.c:203:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,612 203 | network_32bit = esl_hton32(*((uint32_t *) &(obj->dombias))); 2022-12-15T13:21:16,612 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,612 vendor/hmmer/src/p7_domain.c:208:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,612 208 | network_32bit = esl_hton32(*((uint32_t *) &(obj->oasc))); 2022-12-15T13:21:16,613 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,613 vendor/hmmer/src/p7_domain.c:213:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,613 213 | network_32bit = esl_hton32(*((uint32_t *) &(obj->bitscore))); 2022-12-15T13:21:16,614 | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,614 vendor/hmmer/src/p7_domain.c:218:32: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,614 218 | network_64bit = esl_hton64(*((uint64_t *) &(obj->lnP))); 2022-12-15T13:21:16,614 | ~^~~~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,614 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/p7_trace.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/p7_trace.o 2022-12-15T13:21:16,615 vendor/hmmer/src/p7_domain.c:253:16: warning: comparison of integer expressions of different signedness: ‘uint32_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,615 253 | if (ser_size != ptr - (*buf + *n)){ 2022-12-15T13:21:16,615 | ^~ 2022-12-15T13:21:16,615 In file included from vendor/hmmer/src/p7_hmmcache.c:15: 2022-12-15T13:21:16,615 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,616 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,616 | ^~~~~ 2022-12-15T13:21:16,616 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,616 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,616 | ^~~~~~ 2022-12-15T13:21:16,617 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,617 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,617 | ^~~~~~ 2022-12-15T13:21:16,617 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,618 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,618 | ^~~~~~ 2022-12-15T13:21:16,619 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,619 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,619 | ^~~~~~ 2022-12-15T13:21:16,620 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,621 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,622 | ^~~~~~~~~~~ 2022-12-15T13:21:16,622 | P7_PROFILE 2022-12-15T13:21:16,622 vendor/hmmer/src/p7_domain.c: In function ‘p7_domain_Deserialize’: 2022-12-15T13:21:16,622 vendor/hmmer/src/p7_domain.c:341:22: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,623 341 | ret_obj->envsc = *((float *) &host_32bit); 2022-12-15T13:21:16,623 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,623 vendor/hmmer/src/p7_domain.c:347:30: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,624 347 | ret_obj->domcorrection = *((float *) &host_32bit); 2022-12-15T13:21:16,624 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,625 vendor/hmmer/src/p7_domain.c:353:24: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,625 353 | ret_obj->dombias = *((float *) &host_32bit); 2022-12-15T13:21:16,625 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,626 vendor/hmmer/src/p7_domain.c:359:21: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,626 359 | ret_obj->oasc = *((float *) &host_32bit); 2022-12-15T13:21:16,627 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,627 vendor/hmmer/src/p7_domain.c:365:25: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,628 365 | ret_obj->bitscore = *((float *) &host_32bit); 2022-12-15T13:21:16,628 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,628 vendor/hmmer/src/p7_domain.c:371:20: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,629 371 | ret_obj->lnP = *((double *) &host_64bit); 2022-12-15T13:21:16,629 | ~^~~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,629 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,629 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,630 | ^~~~~~~~~~~ 2022-12-15T13:21:16,631 | P7_PROFILE 2022-12-15T13:21:16,631 vendor/hmmer/src/p7_domain.c:398:38: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing] 2022-12-15T13:21:16,632 398 | ret_obj->scores_per_pos[i] = *((float *) &host_32bit); 2022-12-15T13:21:16,632 | ~^~~~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,632 vendor/hmmer/src/p7_domain.c:404:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,632 404 | if(ptr - (buf + *n) != obj_size){ 2022-12-15T13:21:16,633 | ^~ 2022-12-15T13:21:16,633 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,633 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,634 | ^~~~~~~~~~~ 2022-12-15T13:21:16,634 | P7_PROFILE 2022-12-15T13:21:16,635 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,635 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,635 | ^~~~~~~~~~~ 2022-12-15T13:21:16,636 | P7_PROFILE 2022-12-15T13:21:16,636 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,636 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,636 | ^~~~~~~~~~~ 2022-12-15T13:21:16,637 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,637 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,638 | ^~~~~~~~~~~ 2022-12-15T13:21:16,639 | P7_PROFILE 2022-12-15T13:21:16,640 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,641 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,641 | ^~~~~~~~~~~ 2022-12-15T13:21:16,642 | P7_PROFILE 2022-12-15T13:21:16,644 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,645 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,645 | ^~~~~~~~~~~ 2022-12-15T13:21:16,645 | P7_PROFILE 2022-12-15T13:21:16,647 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,647 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,648 | ^~~~~~ 2022-12-15T13:21:16,648 | P7_GMX 2022-12-15T13:21:16,650 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,650 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,651 | ^~~~~~ 2022-12-15T13:21:16,651 | P7_GMX 2022-12-15T13:21:16,652 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,653 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,653 | ^~~~~~ 2022-12-15T13:21:16,653 | P7_GMX 2022-12-15T13:21:16,655 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,655 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,655 | ^~~~~~ 2022-12-15T13:21:16,656 | P7_GMX 2022-12-15T13:21:16,659 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,659 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,660 | ^~~~~~~~~~~ 2022-12-15T13:21:16,660 | P7_PROFILE 2022-12-15T13:21:16,661 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,662 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,663 | ^~~~~~~~~~~ 2022-12-15T13:21:16,663 | P7_PROFILE 2022-12-15T13:21:16,665 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,665 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,665 | ^~~~~~~~~~~ 2022-12-15T13:21:16,666 | P7_PROFILE 2022-12-15T13:21:16,666 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,666 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,667 | ^~~~~~~~~~~ 2022-12-15T13:21:16,667 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,667 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,668 | ^~~~~~~~~~~ 2022-12-15T13:21:16,668 generating build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o from vendor/hmmer/src/fm_general.c 2022-12-15T13:21:16,668 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ivendor/easel -Ivendor/hmmer/src -Ivendor/hmmer/libdivsufsort -Ibuild/temp.linux-armv7l-cpython-39 -c vendor/hmmer/src/fm_general.c -o build/temp.linux-armv7l-cpython-39/vendor/hmmer/src/fm_general.o 2022-12-15T13:21:16,669 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,670 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,670 | ^~~~~~~~~~~ 2022-12-15T13:21:16,670 | P7_PROFILE 2022-12-15T13:21:16,672 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,673 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,673 | ^~~~~~~~~~~ 2022-12-15T13:21:16,673 | P7_PROFILE 2022-12-15T13:21:16,679 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,679 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,680 | ^~~~~~~~~~~ 2022-12-15T13:21:16,680 | P7_PROFILE 2022-12-15T13:21:16,681 In file included from vendor/hmmer/src/p7_hmmcache.c:16: 2022-12-15T13:21:16,681 vendor/hmmer/src/p7_hmmcache.h:13:3: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,681 13 | P7_OPROFILE **list; /* list of profiles [0 .. n-1] */ 2022-12-15T13:21:16,682 | ^~~~~~~~~~~ 2022-12-15T13:21:16,682 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Open’: 2022-12-15T13:21:16,683 vendor/hmmer/src/p7_hmmcache.c:55:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,683 55 | P7_OPROFILE *om = NULL; /* target profile */ 2022-12-15T13:21:16,683 | ^~~~~~~~~~~ 2022-12-15T13:21:16,684 | P7_PROFILE 2022-12-15T13:21:16,687 In file included from vendor/hmmer/src/p7_hmmcache.c:13: 2022-12-15T13:21:16,687 vendor/hmmer/src/p7_hmmcache.c:66:33: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,687 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:21:16,688 | ^~~~~~~~~~~ 2022-12-15T13:21:16,688 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:21:16,688 158 | if ( size <= 0 ) { \ 2022-12-15T13:21:16,688 | ^~~~ 2022-12-15T13:21:16,689 vendor/hmmer/src/p7_hmmcache.c:66:33: note: each undeclared identifier is reported only once for each function it appears in 2022-12-15T13:21:16,689 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:21:16,689 | ^~~~~~~~~~~ 2022-12-15T13:21:16,689 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:21:16,690 158 | if ( size <= 0 ) { \ 2022-12-15T13:21:16,690 | ^~~~ 2022-12-15T13:21:16,690 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:21:16,691 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:21:16,691 | ^ 2022-12-15T13:21:16,691 vendor/easel/easel.h:158:10: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:21:16,692 158 | if ( size <= 0 ) { \ 2022-12-15T13:21:16,692 | ^~~~ 2022-12-15T13:21:16,692 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:21:16,693 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:21:16,693 | ^ 2022-12-15T13:21:16,693 vendor/easel/easel.h:164:24: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:21:16,693 164 | if ( ((p) = malloc(size)) == NULL) { \ 2022-12-15T13:21:16,693 | ^~~~ 2022-12-15T13:21:16,694 vendor/hmmer/src/p7_hmmcache.c:66:46: error: expected expression before ‘)’ token 2022-12-15T13:21:16,694 66 | ESL_ALLOC(cache->list, sizeof(P7_OPROFILE *) * cache->lalloc); 2022-12-15T13:21:16,694 | ^ 2022-12-15T13:21:16,695 vendor/easel/easel.h:166:85: note: in definition of macro ‘ESL_ALLOC’ 2022-12-15T13:21:16,695 166 | esl_exception(status, FALSE, __FILE__, __LINE__, "malloc of size %d failed", size); \ 2022-12-15T13:21:16,695 | ^~~~ 2022-12-15T13:21:16,696 vendor/hmmer/src/p7_hmmcache.c:70:20: warning: implicit declaration of function ‘p7_oprofile_ReadMSV’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,698 70 | while ((status = p7_oprofile_ReadMSV(hfp, &(cache->abc), &om)) == eslOK) /* eslEFORMAT | eslEINCOMPAT */ 2022-12-15T13:21:16,699 | ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,699 | p7_profile_Reuse 2022-12-15T13:21:16,700 vendor/hmmer/src/p7_hmmcache.c:72:22: warning: implicit declaration of function ‘p7_oprofile_ReadRest’; did you mean ‘p7_profile_Reuse’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,701 72 | if (( status = p7_oprofile_ReadRest(hfp, om)) != eslOK) break; /* eslEFORMAT */ 2022-12-15T13:21:16,701 | ^~~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,701 | p7_profile_Reuse 2022-12-15T13:21:16,703 vendor/hmmer/src/p7_hmmcache.c:91:14: warning: implicit declaration of function ‘p7_oprofile_Destroy’; did you mean ‘p7_profile_Destroy’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,703 91 | if (om) p7_oprofile_Destroy(om); 2022-12-15T13:21:16,703 | ^~~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,704 | p7_profile_Destroy 2022-12-15T13:21:16,706 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Sizeof’: 2022-12-15T13:21:16,706 vendor/hmmer/src/p7_hmmcache.c:108:15: error: ‘P7_OPROFILE’ undeclared (first use in this function); did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,706 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-15T13:21:16,707 | ^~~~~~~~~~~ 2022-12-15T13:21:16,707 | P7_PROFILE 2022-12-15T13:21:16,708 vendor/hmmer/src/p7_hmmcache.c:108:28: error: expected expression before ‘)’ token 2022-12-15T13:21:16,708 108 | n += sizeof(P7_OPROFILE *) * cache->lalloc; /* cache->list */ 2022-12-15T13:21:16,708 | ^ 2022-12-15T13:21:16,709 vendor/hmmer/src/p7_hmmcache.c:110:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,709 110 | for (i = 0; i < cache->n; i++) 2022-12-15T13:21:16,710 | ^ 2022-12-15T13:21:16,710 vendor/hmmer/src/p7_hmmcache.c:111:10: warning: implicit declaration of function ‘p7_oprofile_Sizeof’; did you mean ‘p7_profile_Sizeof’? [-Wimplicit-function-declaration] 2022-12-15T13:21:16,711 111 | n += p7_oprofile_Sizeof(cache->list[i]); 2022-12-15T13:21:16,711 | ^~~~~~~~~~~~~~~~~~ 2022-12-15T13:21:16,712 | p7_profile_Sizeof 2022-12-15T13:21:16,712 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_SetNumericNames’: 2022-12-15T13:21:16,712 vendor/hmmer/src/p7_hmmcache.c:134:3: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,713 134 | P7_OPROFILE *om; 2022-12-15T13:21:16,713 | ^~~~~~~~~~~ 2022-12-15T13:21:16,713 | P7_PROFILE 2022-12-15T13:21:16,713 vendor/hmmer/src/p7_hmmcache.c:138:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,714 138 | for (i = 0; i < cache->n; i++) 2022-12-15T13:21:16,715 | ^ 2022-12-15T13:21:16,716 vendor/hmmer/src/p7_hmmcache.c:141:13: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:21:16,716 141 | if (om->name) free(om->name); 2022-12-15T13:21:16,717 | ^~ 2022-12-15T13:21:16,717 vendor/hmmer/src/p7_hmmcache.c:141:28: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:21:16,717 141 | if (om->name) free(om->name); 2022-12-15T13:21:16,717 | ^~ 2022-12-15T13:21:16,718 vendor/hmmer/src/p7_hmmcache.c:142:38: error: request for member ‘name’ in something not a structure or union 2022-12-15T13:21:16,718 142 | if (( status = esl_sprintf(&(om->name), "%0*d", namelen, i+1)) != eslOK) return status; 2022-12-15T13:21:16,718 | ^~ 2022-12-15T13:21:16,719 vendor/hmmer/src/p7_hmmcache.c: In function ‘p7_hmmcache_Close’: 2022-12-15T13:21:16,719 vendor/hmmer/src/p7_hmmcache.c:161:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,720 161 | for (i = 0; i < cache->n; i++) 2022-12-15T13:21:16,720 | ^ 2022-12-15T13:21:16,815 In file included from vendor/hmmer/src/p7_trace.c:22: 2022-12-15T13:21:16,815 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,816 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,816 | ^~~~~ 2022-12-15T13:21:16,816 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,817 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,817 | ^~~~~~ 2022-12-15T13:21:16,817 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,817 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,817 | ^~~~~~ 2022-12-15T13:21:16,817 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,818 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,818 | ^~~~~~ 2022-12-15T13:21:16,818 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,818 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,819 | ^~~~~~ 2022-12-15T13:21:16,819 In file included from vendor/hmmer/src/p7_prior.c:11: 2022-12-15T13:21:16,819 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,819 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,819 | ^~~~~ 2022-12-15T13:21:16,820 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,820 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,820 | ^~~~~~ 2022-12-15T13:21:16,820 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,820 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,821 | ^~~~~~ 2022-12-15T13:21:16,822 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,822 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,822 | ^~~~~~ 2022-12-15T13:21:16,823 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,823 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,823 | ^~~~~~ 2022-12-15T13:21:16,824 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,824 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,825 | ^~~~~~~~~~~ 2022-12-15T13:21:16,825 | P7_PROFILE 2022-12-15T13:21:16,826 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,826 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,826 | ^~~~~~~~~~~ 2022-12-15T13:21:16,826 | P7_PROFILE 2022-12-15T13:21:16,827 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,828 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,828 | ^~~~~~~~~~~ 2022-12-15T13:21:16,828 | P7_PROFILE 2022-12-15T13:21:16,829 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,829 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,829 | ^~~~~~~~~~~ 2022-12-15T13:21:16,829 | P7_PROFILE 2022-12-15T13:21:16,830 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,830 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,830 | ^~~~~~~~~~~ 2022-12-15T13:21:16,831 | P7_PROFILE 2022-12-15T13:21:16,831 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,831 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,831 | ^~~~~~~~~~~ 2022-12-15T13:21:16,832 | P7_PROFILE 2022-12-15T13:21:16,832 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,832 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,832 | ^~~~~~~~~~~ 2022-12-15T13:21:16,832 | P7_PROFILE 2022-12-15T13:21:16,833 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,833 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,834 | ^~~~~~~~~~~ 2022-12-15T13:21:16,834 | P7_PROFILE 2022-12-15T13:21:16,834 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,834 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,834 | ^~~~~~~~~~~ 2022-12-15T13:21:16,835 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,835 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,836 | ^~~~~~~~~~~ 2022-12-15T13:21:16,836 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,837 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,837 | ^~~~~~~~~~~ 2022-12-15T13:21:16,837 | P7_PROFILE 2022-12-15T13:21:16,838 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,838 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,839 | ^~~~~~~~~~~ 2022-12-15T13:21:16,839 | P7_PROFILE 2022-12-15T13:21:16,840 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,840 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,840 | ^~~~~~~~~~~ 2022-12-15T13:21:16,840 | P7_PROFILE 2022-12-15T13:21:16,841 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,841 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,842 | ^~~~~~~~~~~ 2022-12-15T13:21:16,842 | P7_PROFILE 2022-12-15T13:21:16,843 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,843 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,843 | ^~~~~~~~~~~ 2022-12-15T13:21:16,844 | P7_PROFILE 2022-12-15T13:21:16,844 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,845 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,845 | ^~~~~~~~~~~ 2022-12-15T13:21:16,846 | P7_PROFILE 2022-12-15T13:21:16,846 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,847 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,847 | ^~~~~~ 2022-12-15T13:21:16,847 | P7_GMX 2022-12-15T13:21:16,847 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,848 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,849 | ^~~~~~ 2022-12-15T13:21:16,849 | P7_GMX 2022-12-15T13:21:16,849 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,849 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,850 | ^~~~~~ 2022-12-15T13:21:16,850 | P7_GMX 2022-12-15T13:21:16,850 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,851 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,852 | ^~~~~~ 2022-12-15T13:21:16,852 | P7_GMX 2022-12-15T13:21:16,852 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,853 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,853 | ^~~~~~ 2022-12-15T13:21:16,853 | P7_GMX 2022-12-15T13:21:16,854 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,854 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,854 | ^~~~~~ 2022-12-15T13:21:16,855 | P7_GMX 2022-12-15T13:21:16,855 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,856 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,856 | ^~~~~~ 2022-12-15T13:21:16,856 | P7_GMX 2022-12-15T13:21:16,856 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,857 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,857 | ^~~~~~ 2022-12-15T13:21:16,857 | P7_GMX 2022-12-15T13:21:16,858 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,859 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,859 | ^~~~~~~~~~~ 2022-12-15T13:21:16,860 | P7_PROFILE 2022-12-15T13:21:16,861 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,862 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,862 | ^~~~~~~~~~~ 2022-12-15T13:21:16,863 | P7_PROFILE 2022-12-15T13:21:16,863 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,863 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,864 | ^~~~~~~~~~~ 2022-12-15T13:21:16,864 | P7_PROFILE 2022-12-15T13:21:16,864 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,865 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,865 | ^~~~~~~~~~~ 2022-12-15T13:21:16,865 | P7_PROFILE 2022-12-15T13:21:16,866 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,866 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,867 | ^~~~~~~~~~~ 2022-12-15T13:21:16,867 | P7_PROFILE 2022-12-15T13:21:16,867 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,867 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,868 | ^~~~~~~~~~~ 2022-12-15T13:21:16,868 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,868 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,868 | ^~~~~~~~~~~ 2022-12-15T13:21:16,869 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,870 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,870 | ^~~~~~~~~~~ 2022-12-15T13:21:16,870 | P7_PROFILE 2022-12-15T13:21:16,871 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,871 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,872 | ^~~~~~~~~~~ 2022-12-15T13:21:16,872 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,872 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,873 | ^~~~~~~~~~~ 2022-12-15T13:21:16,873 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,874 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,874 | ^~~~~~~~~~~ 2022-12-15T13:21:16,874 | P7_PROFILE 2022-12-15T13:21:16,875 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,875 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,876 | ^~~~~~~~~~~ 2022-12-15T13:21:16,876 | P7_PROFILE 2022-12-15T13:21:16,876 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,877 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,877 | ^~~~~~~~~~~ 2022-12-15T13:21:16,877 | P7_PROFILE 2022-12-15T13:21:16,878 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,879 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,879 | ^~~~~~~~~~~ 2022-12-15T13:21:16,879 | P7_PROFILE 2022-12-15T13:21:16,880 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,880 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,881 | ^~~~~~~~~~~ 2022-12-15T13:21:16,881 | P7_PROFILE 2022-12-15T13:21:16,881 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,882 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,882 | ^~~~~~~~~~~ 2022-12-15T13:21:16,882 | P7_PROFILE 2022-12-15T13:21:16,924 In file included from vendor/hmmer/src/fm_general.c:14: 2022-12-15T13:21:16,925 vendor/hmmer/src/hmmer.h:829:2: error: #error "No vector implementation enabled" 2022-12-15T13:21:16,926 829 | #error "No vector implementation enabled" 2022-12-15T13:21:16,927 | ^~~~~ 2022-12-15T13:21:16,927 vendor/hmmer/src/hmmer.h:1179:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,927 1179 | P7_OMX *oxf; /* one-row Forward matrix, accel pipe */ 2022-12-15T13:21:16,927 | ^~~~~~ 2022-12-15T13:21:16,928 vendor/hmmer/src/hmmer.h:1180:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,928 1180 | P7_OMX *oxb; /* one-row Backward matrix, accel pipe */ 2022-12-15T13:21:16,928 | ^~~~~~ 2022-12-15T13:21:16,928 vendor/hmmer/src/hmmer.h:1181:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,928 1181 | P7_OMX *fwd; /* full Fwd matrix for domain envelopes */ 2022-12-15T13:21:16,929 | ^~~~~~ 2022-12-15T13:21:16,929 vendor/hmmer/src/hmmer.h:1182:3: error: unknown type name ‘P7_OMX’ 2022-12-15T13:21:16,929 1182 | P7_OMX *bck; /* full Bck matrix for domain envelopes */ 2022-12-15T13:21:16,930 | ^~~~~~ 2022-12-15T13:21:16,931 vendor/hmmer/src/hmmer.h:1333:120: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,931 1333 | extern int p7_Calibrate(P7_HMM *hmm, P7_BUILDER *cfg_b, ESL_RANDOMNESS **byp_rng, P7_BG **byp_bg, P7_PROFILE **byp_gm, P7_OPROFILE **byp_om); 2022-12-15T13:21:16,931 | ^~~~~~~~~~~ 2022-12-15T13:21:16,932 | P7_PROFILE 2022-12-15T13:21:16,933 vendor/hmmer/src/hmmer.h:1335:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,933 1335 | extern int p7_MSVMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_mmu); 2022-12-15T13:21:16,934 | ^~~~~~~~~~~ 2022-12-15T13:21:16,934 | P7_PROFILE 2022-12-15T13:21:16,935 vendor/hmmer/src/hmmer.h:1336:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,936 1336 | extern int p7_ViterbiMu (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double *ret_vmu); 2022-12-15T13:21:16,936 | ^~~~~~~~~~~ 2022-12-15T13:21:16,936 | P7_PROFILE 2022-12-15T13:21:16,937 vendor/hmmer/src/hmmer.h:1337:45: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,938 1337 | extern int p7_Tau (ESL_RANDOMNESS *r, P7_OPROFILE *om, P7_BG *bg, int L, int N, double lambda, double tailp, double *ret_tau); 2022-12-15T13:21:16,938 | ^~~~~~~~~~~ 2022-12-15T13:21:16,938 | P7_PROFILE 2022-12-15T13:21:16,939 vendor/hmmer/src/hmmer.h:1468:81: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,940 1468 | extern P7_ALIDISPLAY *p7_alidisplay_Create(const P7_TRACE *tr, int which, const P7_OPROFILE *om, const ESL_SQ *sq, const ESL_SQ *ntsq); 2022-12-15T13:21:16,940 | ^~~~~~~~~~~ 2022-12-15T13:21:16,943 vendor/hmmer/src/hmmer.h:1511:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,943 1511 | extern int p7_Builder (P7_BUILDER *bld, ESL_MSA *msa, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE ***opt_trarr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om, ESL_MSA **opt_postmsa); 2022-12-15T13:21:16,944 | ^~~~~~~~~~~ 2022-12-15T13:21:16,944 | P7_PROFILE 2022-12-15T13:21:16,945 vendor/hmmer/src/hmmer.h:1512:133: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,945 1512 | extern int p7_SingleBuilder(P7_BUILDER *bld, ESL_SQ *sq, P7_BG *bg, P7_HMM **opt_hmm, P7_TRACE **opt_tr, P7_PROFILE **opt_gm, P7_OPROFILE **opt_om); 2022-12-15T13:21:16,946 | ^~~~~~~~~~~ 2022-12-15T13:21:16,946 | P7_PROFILE 2022-12-15T13:21:16,948 vendor/hmmer/src/hmmer.h:1532:85: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,949 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,949 | ^~~~~~~~~~~ 2022-12-15T13:21:16,949 | P7_PROFILE 2022-12-15T13:21:16,951 vendor/hmmer/src/hmmer.h:1532:102: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,951 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,951 | ^~~~~~ 2022-12-15T13:21:16,952 | P7_GMX 2022-12-15T13:21:16,953 vendor/hmmer/src/hmmer.h:1532:115: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,954 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,954 | ^~~~~~ 2022-12-15T13:21:16,954 | P7_GMX 2022-12-15T13:21:16,955 vendor/hmmer/src/hmmer.h:1532:128: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,956 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,956 | ^~~~~~ 2022-12-15T13:21:16,956 | P7_GMX 2022-12-15T13:21:16,958 vendor/hmmer/src/hmmer.h:1532:141: error: unknown type name ‘P7_OMX’; did you mean ‘P7_GMX’? 2022-12-15T13:21:16,958 1532 | extern int p7_domaindef_ByPosteriorHeuristics(const ESL_SQ *sq, const ESL_SQ *ntsq, P7_OPROFILE *om, P7_OMX *oxf, P7_OMX *oxb, P7_OMX *fwd, P7_OMX *bck, 2022-12-15T13:21:16,959 | ^~~~~~ 2022-12-15T13:21:16,959 | P7_GMX 2022-12-15T13:21:16,962 vendor/hmmer/src/hmmer.h:1617:47: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,963 1617 | extern P7_SCOREDATA *p7_hmm_ScoreDataCreate(P7_OPROFILE *om, P7_PROFILE *gm ); 2022-12-15T13:21:16,963 | ^~~~~~~~~~~ 2022-12-15T13:21:16,963 | P7_PROFILE 2022-12-15T13:21:16,965 vendor/hmmer/src/hmmer.h:1619:51: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,965 1619 | extern int p7_hmm_ScoreDataComputeRest(P7_OPROFILE *om, P7_SCOREDATA *data ); 2022-12-15T13:21:16,965 | ^~~~~~~~~~~ 2022-12-15T13:21:16,966 | P7_PROFILE 2022-12-15T13:21:16,968 vendor/hmmer/src/hmmer.h:1636:42: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,968 1636 | extern int p7_pli_ExtendAndMergeWindows (P7_OPROFILE *om, const P7_SCOREDATA *msvdata, P7_HMM_WINDOWLIST *windowlist, float pct_overlap); 2022-12-15T13:21:16,968 | ^~~~~~~~~~~ 2022-12-15T13:21:16,968 | P7_PROFILE 2022-12-15T13:21:16,969 vendor/hmmer/src/hmmer.h:1642:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,969 1642 | extern int p7_pli_NewModel (P7_PIPELINE *pli, const P7_OPROFILE *om, P7_BG *bg); 2022-12-15T13:21:16,969 | ^~~~~~~~~~~ 2022-12-15T13:21:16,969 vendor/hmmer/src/hmmer.h:1643:62: error: unknown type name ‘P7_OPROFILE’ 2022-12-15T13:21:16,969 1643 | extern int p7_pli_NewModelThresholds(P7_PIPELINE *pli, const P7_OPROFILE *om); 2022-12-15T13:21:16,970 | ^~~~~~~~~~~ 2022-12-15T13:21:16,972 vendor/hmmer/src/hmmer.h:1645:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,972 1645 | extern int p7_Pipeline (P7_PIPELINE *pli, P7_OPROFILE *om, P7_BG *bg, const ESL_SQ *sq, const ESL_SQ *ntsq, P7_TOPHITS *th); 2022-12-15T13:21:16,973 | ^~~~~~~~~~~ 2022-12-15T13:21:16,973 | P7_PROFILE 2022-12-15T13:21:16,974 vendor/hmmer/src/hmmer.h:1646:56: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,974 1646 | extern int p7_Pipeline_LongTarget (P7_PIPELINE *pli, P7_OPROFILE *om, P7_SCOREDATA *data, 2022-12-15T13:21:16,975 | ^~~~~~~~~~~ 2022-12-15T13:21:16,975 | P7_PROFILE 2022-12-15T13:21:16,979 vendor/hmmer/src/hmmer.h:1803:33: error: unknown type name ‘P7_OPROFILE’; did you mean ‘P7_PROFILE’? 2022-12-15T13:21:16,979 1803 | extern int p7_SSVFM_longlarget( P7_OPROFILE *om, float nu, P7_BG *bg, double F1, 2022-12-15T13:21:16,979 | ^~~~~~~~~~~ 2022-12-15T13:21:16,979 | P7_PROFILE 2022-12-15T13:21:16,983 vendor/hmmer/src/fm_general.c: In function ‘fm_findOverlappingAmbiguityBlock’: 2022-12-15T13:21:16,983 vendor/hmmer/src/fm_general.c:292:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,983 292 | if (ranges[lo].lower > end) return -1; 2022-12-15T13:21:16,984 | ^ 2022-12-15T13:21:16,984 vendor/hmmer/src/fm_general.c:293:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,984 293 | if (ranges[hi].upper < start) return -1; 2022-12-15T13:21:16,984 | ^ 2022-12-15T13:21:16,984 vendor/hmmer/src/fm_general.c:297:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,984 297 | if (ranges[mid].lower < start) lo = mid + 1; // too far left 2022-12-15T13:21:16,984 | ^ 2022-12-15T13:21:16,984 vendor/hmmer/src/fm_general.c:302:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,985 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-15T13:21:16,985 | ^~ 2022-12-15T13:21:16,985 vendor/hmmer/src/fm_general.c:302:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,985 302 | if (lo>0 && ranges[lo-1].upper >= start && ranges[lo-1].lower <= end) return lo-1; 2022-12-15T13:21:16,985 | ^~ 2022-12-15T13:21:16,985 vendor/hmmer/src/fm_general.c:303:42: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,985 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-15T13:21:16,986 | ^~ 2022-12-15T13:21:16,986 vendor/hmmer/src/fm_general.c:303:73: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,986 303 | else if ( ranges[lo].upper >= start && ranges[lo].lower <= end) return lo; 2022-12-15T13:21:16,986 | ^~ 2022-12-15T13:21:16,986 vendor/hmmer/src/fm_general.c: In function ‘fm_convertRange2DSQ’: 2022-12-15T13:21:16,986 vendor/hmmer/src/fm_general.c:350:20: warning: comparison of integer expressions of different signedness: ‘int32_t’ {aka ‘int’} and ‘unsigned int’ [-Wsign-compare] 2022-12-15T13:21:16,987 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-15T13:21:16,987 | ^~ 2022-12-15T13:21:16,987 vendor/hmmer/src/fm_general.c:350:98: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint64_t’ {aka ‘long long unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,987 350 | while (pos <= fm->ambig_offset + fm->ambig_cnt -1 && meta->ambig_list->ranges[pos].lower <= first+length-1) { 2022-12-15T13:21:16,987 | ^~ 2022-12-15T13:21:16,987 In file included from vendor/hmmer/src/fm_general.c:12: 2022-12-15T13:21:16,987 vendor/easel/easel.h:417:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,987 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:21:16,988 | ^ 2022-12-15T13:21:16,988 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:21:16,988 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-15T13:21:16,988 | ^~~~~~~ 2022-12-15T13:21:16,988 vendor/easel/easel.h:417:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:21:16,988 417 | #define ESL_MAX(a,b) (((a)>(b))?(a):(b)) 2022-12-15T13:21:16,988 | ^~~ 2022-12-15T13:21:16,988 vendor/hmmer/src/fm_general.c:351:23: note: in expansion of macro ‘ESL_MAX’ 2022-12-15T13:21:16,989 351 | int start = ESL_MAX(first, meta->ambig_list->ranges[pos].lower); 2022-12-15T13:21:16,989 | ^~~~~~~ 2022-12-15T13:21:16,989 vendor/easel/easel.h:416:36: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,989 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:21:16,989 | ^ 2022-12-15T13:21:16,989 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:21:16,989 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-15T13:21:16,990 | ^~~~~~~ 2022-12-15T13:21:16,990 vendor/easel/easel.h:416:46: warning: operand of ‘?:’ changes signedness from ‘int’ to ‘uint64_t’ {aka ‘long long unsigned int’} due to unsignedness of other operand [-Wsign-compare] 2022-12-15T13:21:16,990 416 | #define ESL_MIN(a,b) (((a)<(b))?(a):(b)) 2022-12-15T13:21:16,990 | ^~~ 2022-12-15T13:21:16,990 vendor/hmmer/src/fm_general.c:352:23: note: in expansion of macro ‘ESL_MIN’ 2022-12-15T13:21:16,990 352 | int end = ESL_MIN(first+length-1, meta->ambig_list->ranges[pos].upper); 2022-12-15T13:21:16,990 | ^~~~~~~ 2022-12-15T13:21:16,991 vendor/hmmer/src/fm_general.c:353:27: warning: comparison of integer expressions of different signedness: ‘uint64_t’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,991 353 | for (j= start; j<=end; j++) 2022-12-15T13:21:16,991 | ^~ 2022-12-15T13:21:16,993 vendor/hmmer/src/fm_general.c: In function ‘fm_FM_read’: 2022-12-15T13:21:16,993 vendor/hmmer/src/fm_general.c:537:75: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-15T13:21:16,994 537 | (getAll && fread(fm->T, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-15T13:21:16,994 | ^~ 2022-12-15T13:21:16,994 vendor/hmmer/src/fm_general.c:538:68: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int32_t’ {aka ‘int’} [-Wsign-compare] 2022-12-15T13:21:16,994 538 | (fread(fm->BWT, sizeof(uint8_t), compressed_bytes, meta->fp) != compressed_bytes) || 2022-12-15T13:21:16,994 | ^~ 2022-12-15T13:21:16,996 vendor/hmmer/src/fm_general.c: In function ‘fm_readFMmeta’: 2022-12-15T13:21:16,996 vendor/hmmer/src/fm_general.c:620:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:16,996 620 | for (i=0; iseq_count; i++) { 2022-12-15T13:21:16,996 | ^ 2022-12-15T13:21:16,998 vendor/hmmer/src/fm_general.c:638:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,999 638 | fread(meta->seq_data[i].name, sizeof(char), meta->seq_data[i].name_length+1 , meta->fp) != meta->seq_data[i].name_length+1 || 2022-12-15T13:21:16,999 | ^~ 2022-12-15T13:21:16,999 vendor/hmmer/src/fm_general.c:639:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:16,999 639 | fread(meta->seq_data[i].acc, sizeof(char), meta->seq_data[i].acc_length+1 , meta->fp) != meta->seq_data[i].acc_length+1 || 2022-12-15T13:21:16,999 | ^~ 2022-12-15T13:21:16,999 vendor/hmmer/src/fm_general.c:640:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:17,000 640 | fread(meta->seq_data[i].source, sizeof(char), meta->seq_data[i].source_length+1 , meta->fp) != meta->seq_data[i].source_length+1 || 2022-12-15T13:21:17,000 | ^~ 2022-12-15T13:21:17,000 vendor/hmmer/src/fm_general.c:641:101: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2022-12-15T13:21:17,000 641 | fread(meta->seq_data[i].desc, sizeof(char), meta->seq_data[i].desc_length+1 , meta->fp) != meta->seq_data[i].desc_length+1 2022-12-15T13:21:17,000 | ^~ 2022-12-15T13:21:17,001 vendor/hmmer/src/fm_general.c:651:14: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:17,001 651 | for (i=0; iambig_list->count; i++) { 2022-12-15T13:21:17,001 | ^ 2022-12-15T13:21:17,001 vendor/hmmer/src/fm_general.c:663:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:17,002 663 | for (i=0; iseq_count; i++) 2022-12-15T13:21:17,002 | ^ 2022-12-15T13:21:17,003 vendor/hmmer/src/fm_general.c: In function ‘fm_metaDestroy’: 2022-12-15T13:21:17,003 vendor/hmmer/src/fm_general.c:727:16: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32_t’ {aka ‘unsigned int’} [-Wsign-compare] 2022-12-15T13:21:17,003 727 | for (i=0; iseq_count; i++) { 2022-12-15T13:21:17,003 | ^ 2022-12-15T13:21:17,027 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2022-12-15T13:21:17,186 ERROR: [present-rich] Building wheel for pyhmmer (pyproject.toml) exited with 1 2022-12-15T13:21:17,203 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/local/lib/python3.9/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmpbk40v_cm[/] 2022-12-15T13:21:17,204 [bold magenta]cwd[/]: /tmp/pip-wheel-krl3vv2a/pyhmmer_1df3f94ff913476b8bc0c1e4d074c7fd 2022-12-15T13:21:17,204 Building wheel for pyhmmer (pyproject.toml): finished with status 'error' 2022-12-15T13:21:17,206 ERROR: Failed building wheel for pyhmmer 2022-12-15T13:21:17,209 Failed to build pyhmmer 2022-12-15T13:21:17,210 ERROR: Failed to build one or more wheels 2022-12-15T13:21:17,211 Exception information: 2022-12-15T13:21:17,211 Traceback (most recent call last): 2022-12-15T13:21:17,211 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2022-12-15T13:21:17,211 status = run_func(*args) 2022-12-15T13:21:17,211 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2022-12-15T13:21:17,211 return func(self, options, args) 2022-12-15T13:21:17,211 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2022-12-15T13:21:17,211 raise CommandError("Failed to build one or more wheels") 2022-12-15T13:21:17,211 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2022-12-15T13:21:17,215 Removed build tracker: '/tmp/pip-build-tracker-mwx5z66h'