2022-12-19T07:54:16,931 Created temporary directory: /tmp/pip-ephem-wheel-cache-78hm4p6m 2022-12-19T07:54:16,933 Created temporary directory: /tmp/pip-build-tracker-d2505u1l 2022-12-19T07:54:16,933 Initialized build tracking at /tmp/pip-build-tracker-d2505u1l 2022-12-19T07:54:16,933 Created build tracker: /tmp/pip-build-tracker-d2505u1l 2022-12-19T07:54:16,933 Entered build tracker: /tmp/pip-build-tracker-d2505u1l 2022-12-19T07:54:16,934 Created temporary directory: /tmp/pip-wheel-laduzg0d 2022-12-19T07:54:16,937 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-19T07:54:16,940 Created temporary directory: /tmp/pip-ephem-wheel-cache-ocr3re87 2022-12-19T07:54:16,967 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-19T07:54:16,970 2 location(s) to search for versions of moffragmentor: 2022-12-19T07:54:16,970 * https://pypi.org/simple/moffragmentor/ 2022-12-19T07:54:16,970 * https://www.piwheels.org/simple/moffragmentor/ 2022-12-19T07:54:16,971 Fetching project page and analyzing links: https://pypi.org/simple/moffragmentor/ 2022-12-19T07:54:16,971 Getting page https://pypi.org/simple/moffragmentor/ 2022-12-19T07:54:16,973 Found index url https://pypi.org/simple 2022-12-19T07:54:17,026 Fetched page https://pypi.org/simple/moffragmentor/ as application/vnd.pypi.simple.v1+json 2022-12-19T07:54:17,029 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/11/aa/d5559b4f957dd5b7ea97963eeffa4b5772dee0cc654224cda68dc78f6db5/moffragmentor-0.0.1.dev0-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,029 Found link https://files.pythonhosted.org/packages/8d/f4/7be5cc9c5ddd459ff95fa1ebb28304d464ef179273ba72e8cc1e401e3a48/moffragmentor-0.0.1.dev0.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.1.dev0 2022-12-19T07:54:17,030 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/fc/9d/1605cb318061ebc8bf8352979488ce1abb7b33523866363aeb45e2b63c6d/moffragmentor-0.0.1-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,030 Found link https://files.pythonhosted.org/packages/39/b9/de1ffc5b3dac4d26e1f32f2b607015016f3a48ba8e73924d4026ae42e82e/moffragmentor-0.0.1.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.1 2022-12-19T07:54:17,031 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/07/ce/8e133d68fd956eeb5f0d87e5491f5b2e3f523f0906401cf30013d1defd5c/moffragmentor-0.0.2-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,031 Found link https://files.pythonhosted.org/packages/16/70/10aa766b2de8d201826dcdf2ce3b97f9e5368dc34f52dcb746ac9304ad50/moffragmentor-0.0.2.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.2 2022-12-19T07:54:17,031 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/5f/aa/14ff551a38b91c97b5a1ffe6c6cdba6324b4b21a14323d9387ec13e9dd2a/moffragmentor-0.0.3-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,032 Found link https://files.pythonhosted.org/packages/b6/7e/f1703f369dc0398952da88718f26a1ecfce8a243dbc7e10baed9dae216bd/moffragmentor-0.0.3.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.3 2022-12-19T07:54:17,032 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/f1/e5/abb17a9f1984b2dea83d3cd5e6da6d5f3a46928669a522d9dc1b6fd34d14/moffragmentor-0.0.4-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,033 Found link https://files.pythonhosted.org/packages/ab/8f/59ccf17220f7e28c2a12c739f35a574cd824ce854c4236b2543a9d82ef09/moffragmentor-0.0.4.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.4 2022-12-19T07:54:17,033 Skipping link: No binaries permitted for moffragmentor: https://files.pythonhosted.org/packages/da/6c/f4d4c91e6655fe0e93ff797c9c3356cd46f69ba8fb89c800dd0792845d75/moffragmentor-0.0.5-py3-none-any.whl (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,033 Found link https://files.pythonhosted.org/packages/5c/89/fd5311d60ca25449be8d3f23a60487721e346205f439e29e35ef3b83c429/moffragmentor-0.0.5.tar.gz (from https://pypi.org/simple/moffragmentor/) (requires-python:>=3.8), version: 0.0.5 2022-12-19T07:54:17,034 Fetching project page and analyzing links: https://www.piwheels.org/simple/moffragmentor/ 2022-12-19T07:54:17,034 Getting page https://www.piwheels.org/simple/moffragmentor/ 2022-12-19T07:54:17,035 Found index url https://www.piwheels.org/simple 2022-12-19T07:54:17,207 Fetched page https://www.piwheels.org/simple/moffragmentor/ as text/html 2022-12-19T07:54:17,210 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.4-py3-none-any.whl#sha256=96389accb0d19eb3f53c256c8366c152a6dc22439329feef79eaefcee948e206 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,210 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.3-py3-none-any.whl#sha256=14424c6ace38a59474c1b4f5c8fd5b44bb6ee31b4e9401874ef7527c397693e4 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,210 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.2-py3-none-any.whl#sha256=e45893aefd5587bad967e1b3259390cec5b6342f037546c6c5f9eabad821fc86 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,211 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.1-py3-none-any.whl#sha256=0ee98e0770ecea766454d255bbb57d0ded2236cd724e5ad0631985b59451fbf3 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,211 Skipping link: No binaries permitted for moffragmentor: https://www.piwheels.org/simple/moffragmentor/moffragmentor-0.0.1.dev0-py3-none-any.whl#sha256=d03b489ea0440258068300c664bf6556b027d04ae7ec55191046a21bfade9969 (from https://www.piwheels.org/simple/moffragmentor/) (requires-python:>=3.8) 2022-12-19T07:54:17,211 Skipping link: not a file: https://www.piwheels.org/simple/moffragmentor/ 2022-12-19T07:54:17,211 Skipping link: not a file: https://pypi.org/simple/moffragmentor/ 2022-12-19T07:54:17,230 Given no hashes to check 1 links for project 'moffragmentor': discarding no candidates 2022-12-19T07:54:17,247 Collecting moffragmentor==0.0.5 2022-12-19T07:54:17,249 Created temporary directory: /tmp/pip-unpack-vs9s4sgk 2022-12-19T07:54:17,920 Downloading moffragmentor-0.0.5.tar.gz (2.8 MB) 2022-12-19T07:54:18,888 Added moffragmentor==0.0.5 from https://files.pythonhosted.org/packages/5c/89/fd5311d60ca25449be8d3f23a60487721e346205f439e29e35ef3b83c429/moffragmentor-0.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-d2505u1l' 2022-12-19T07:54:18,892 Created temporary directory: /tmp/pip-build-env-asub_5o7 2022-12-19T07:54:18,902 Installing build dependencies: started 2022-12-19T07:54:18,904 Running command pip subprocess to install build dependencies 2022-12-19T07:54:20,140 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-19T07:54:20,536 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-19T07:54:20,561 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-19T07:54:22,252 Collecting setuptools>=35.0.2 2022-12-19T07:54:22,366 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-19T07:54:24,327 Installing collected packages: setuptools 2022-12-19T07:54:26,912 Successfully installed setuptools-65.6.3 2022-12-19T07:54:26,929 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-19T07:54:26,929 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-19T07:54:27,181 Installing build dependencies: finished with status 'done' 2022-12-19T07:54:27,187 Getting requirements to build wheel: started 2022-12-19T07:54:27,188 Running command Getting requirements to build wheel 2022-12-19T07:54:28,046 /tmp/pip-build-env-asub_5o7/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-12-19T07:54:28,047 warnings.warn(msg, warning_class) 2022-12-19T07:54:28,240 running egg_info 2022-12-19T07:54:28,245 writing src/moffragmentor.egg-info/PKG-INFO 2022-12-19T07:54:28,248 writing dependency_links to src/moffragmentor.egg-info/dependency_links.txt 2022-12-19T07:54:28,250 writing entry points to src/moffragmentor.egg-info/entry_points.txt 2022-12-19T07:54:28,252 writing requirements to src/moffragmentor.egg-info/requires.txt 2022-12-19T07:54:28,254 writing top-level names to src/moffragmentor.egg-info/top_level.txt 2022-12-19T07:54:28,278 reading manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:28,294 reading manifest template 'MANIFEST.in' 2022-12-19T07:54:28,295 warning: no files found matching 'settings.ini' 2022-12-19T07:54:28,296 warning: no files found matching 'CONTRIBUTING.md' 2022-12-19T07:54:28,297 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-19T07:54:28,298 adding license file 'LICENSE' 2022-12-19T07:54:28,305 writing manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:28,422 Getting requirements to build wheel: finished with status 'done' 2022-12-19T07:54:28,434 Installing backend dependencies: started 2022-12-19T07:54:28,435 Running command pip subprocess to install backend dependencies 2022-12-19T07:54:29,654 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2022-12-19T07:54:30,047 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-19T07:54:30,072 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-19T07:54:30,545 Collecting wheel 2022-12-19T07:54:30,618 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-19T07:54:32,271 Installing collected packages: wheel 2022-12-19T07:54:32,418 Creating /tmp/pip-build-env-asub_5o7/normal/bin 2022-12-19T07:54:32,420 changing mode of /tmp/pip-build-env-asub_5o7/normal/bin/wheel to 755 2022-12-19T07:54:32,435 Successfully installed wheel-0.38.4 2022-12-19T07:54:32,449 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-19T07:54:32,450 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-19T07:54:32,678 Installing backend dependencies: finished with status 'done' 2022-12-19T07:54:32,681 Created temporary directory: /tmp/pip-modern-metadata-5g56qxwl 2022-12-19T07:54:32,684 Preparing metadata (pyproject.toml): started 2022-12-19T07:54:32,685 Running command Preparing metadata (pyproject.toml) 2022-12-19T07:54:33,541 /tmp/pip-build-env-asub_5o7/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-12-19T07:54:33,542 warnings.warn(msg, warning_class) 2022-12-19T07:54:33,589 running dist_info 2022-12-19T07:54:33,610 creating /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info 2022-12-19T07:54:33,614 writing /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/PKG-INFO 2022-12-19T07:54:33,618 writing dependency_links to /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/dependency_links.txt 2022-12-19T07:54:33,620 writing entry points to /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/entry_points.txt 2022-12-19T07:54:33,622 writing requirements to /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/requires.txt 2022-12-19T07:54:33,623 writing top-level names to /tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/top_level.txt 2022-12-19T07:54:33,624 writing manifest file '/tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:33,646 reading manifest file '/tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:33,650 reading manifest template 'MANIFEST.in' 2022-12-19T07:54:33,650 warning: no files found matching 'settings.ini' 2022-12-19T07:54:33,651 warning: no files found matching 'CONTRIBUTING.md' 2022-12-19T07:54:33,652 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-19T07:54:33,653 adding license file 'LICENSE' 2022-12-19T07:54:33,657 writing manifest file '/tmp/pip-modern-metadata-5g56qxwl/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:33,658 creating '/tmp/pip-modern-metadata-5g56qxwl/moffragmentor-0.0.5.dist-info' 2022-12-19T07:54:33,896 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-19T07:54:33,904 Source in /tmp/pip-wheel-laduzg0d/moffragmentor_817bd85e3d5f437ab7a103126d1890f3 has version 0.0.5, which satisfies requirement moffragmentor==0.0.5 from https://files.pythonhosted.org/packages/5c/89/fd5311d60ca25449be8d3f23a60487721e346205f439e29e35ef3b83c429/moffragmentor-0.0.5.tar.gz 2022-12-19T07:54:33,905 Removed moffragmentor==0.0.5 from https://files.pythonhosted.org/packages/5c/89/fd5311d60ca25449be8d3f23a60487721e346205f439e29e35ef3b83c429/moffragmentor-0.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-d2505u1l' 2022-12-19T07:54:33,912 Created temporary directory: /tmp/pip-unpack-rj6jlxx6 2022-12-19T07:54:33,913 Building wheels for collected packages: moffragmentor 2022-12-19T07:54:33,919 Created temporary directory: /tmp/pip-wheel-4h2er749 2022-12-19T07:54:33,919 Destination directory: /tmp/pip-wheel-4h2er749 2022-12-19T07:54:33,921 Building wheel for moffragmentor (pyproject.toml): started 2022-12-19T07:54:33,922 Running command Building wheel for moffragmentor (pyproject.toml) 2022-12-19T07:54:34,740 /tmp/pip-build-env-asub_5o7/overlay/lib/python3.9/site-packages/setuptools/config/setupcfg.py:508: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead. 2022-12-19T07:54:34,740 warnings.warn(msg, warning_class) 2022-12-19T07:54:34,821 running bdist_wheel 2022-12-19T07:54:34,856 running build 2022-12-19T07:54:34,856 running build_py 2022-12-19T07:54:34,863 creating build 2022-12-19T07:54:34,864 creating build/lib 2022-12-19T07:54:34,865 creating build/lib/moffragmentor 2022-12-19T07:54:34,866 copying src/moffragmentor/__init__.py -> build/lib/moffragmentor 2022-12-19T07:54:34,868 copying src/moffragmentor/mof.py -> build/lib/moffragmentor 2022-12-19T07:54:34,871 copying src/moffragmentor/version.py -> build/lib/moffragmentor 2022-12-19T07:54:34,873 copying src/moffragmentor/net.py -> build/lib/moffragmentor 2022-12-19T07:54:34,877 creating build/lib/moffragmentor/cli 2022-12-19T07:54:34,877 copying src/moffragmentor/cli/__init__.py -> build/lib/moffragmentor/cli 2022-12-19T07:54:34,880 creating build/lib/moffragmentor/utils 2022-12-19T07:54:34,881 copying src/moffragmentor/utils/__init__.py -> build/lib/moffragmentor/utils 2022-12-19T07:54:34,883 copying src/moffragmentor/utils/systre.py -> build/lib/moffragmentor/utils 2022-12-19T07:54:34,886 copying src/moffragmentor/utils/mol_compare.py -> build/lib/moffragmentor/utils 2022-12-19T07:54:34,888 copying src/moffragmentor/utils/errors.py -> build/lib/moffragmentor/utils 2022-12-19T07:54:34,889 copying src/moffragmentor/utils/periodic_graph.py -> build/lib/moffragmentor/utils 2022-12-19T07:54:34,892 creating build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,893 copying src/moffragmentor/fragmentor/branching_points.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,896 copying src/moffragmentor/fragmentor/splitter.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,898 copying src/moffragmentor/fragmentor/_graphsearch.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,900 copying src/moffragmentor/fragmentor/__init__.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,902 copying src/moffragmentor/fragmentor/_no_core_linker.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,904 copying src/moffragmentor/fragmentor/molfromgraph.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,907 copying src/moffragmentor/fragmentor/nodelocator.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,909 copying src/moffragmentor/fragmentor/filter.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,911 copying src/moffragmentor/fragmentor/solventlocator.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,914 copying src/moffragmentor/fragmentor/linkerlocator.py -> build/lib/moffragmentor/fragmentor 2022-12-19T07:54:34,917 creating build/lib/moffragmentor/molecule 2022-12-19T07:54:34,918 copying src/moffragmentor/molecule/nonsbumolecule.py -> build/lib/moffragmentor/molecule 2022-12-19T07:54:34,920 copying src/moffragmentor/molecule/__init__.py -> build/lib/moffragmentor/molecule 2022-12-19T07:54:34,922 copying src/moffragmentor/molecule/nonsbumoleculecollection.py -> build/lib/moffragmentor/molecule 2022-12-19T07:54:34,924 creating build/lib/moffragmentor/harvester 2022-12-19T07:54:34,925 copying src/moffragmentor/harvester/__init__.py -> build/lib/moffragmentor/harvester 2022-12-19T07:54:34,927 copying src/moffragmentor/harvester/harvest_building_blocks.py -> build/lib/moffragmentor/harvester 2022-12-19T07:54:34,930 creating build/lib/moffragmentor/sbu 2022-12-19T07:54:34,931 copying src/moffragmentor/sbu/sbu.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,934 copying src/moffragmentor/sbu/__init__.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,936 copying src/moffragmentor/sbu/node.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,938 copying src/moffragmentor/sbu/nodecollection.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,940 copying src/moffragmentor/sbu/linker.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,942 copying src/moffragmentor/sbu/sbucollection.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,944 copying src/moffragmentor/sbu/linkercollection.py -> build/lib/moffragmentor/sbu 2022-12-19T07:54:34,947 creating build/lib/moffragmentor/descriptors 2022-12-19T07:54:34,948 copying src/moffragmentor/descriptors/__init__.py -> build/lib/moffragmentor/descriptors 2022-12-19T07:54:34,950 copying src/moffragmentor/descriptors/sbu_dimensionality.py -> build/lib/moffragmentor/descriptors 2022-12-19T07:54:34,951 running egg_info 2022-12-19T07:54:34,970 writing src/moffragmentor.egg-info/PKG-INFO 2022-12-19T07:54:34,972 writing dependency_links to src/moffragmentor.egg-info/dependency_links.txt 2022-12-19T07:54:34,974 writing entry points to src/moffragmentor.egg-info/entry_points.txt 2022-12-19T07:54:34,976 writing requirements to src/moffragmentor.egg-info/requires.txt 2022-12-19T07:54:34,977 writing top-level names to src/moffragmentor.egg-info/top_level.txt 2022-12-19T07:54:34,988 reading manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:35,004 reading manifest template 'MANIFEST.in' 2022-12-19T07:54:35,005 warning: no files found matching 'settings.ini' 2022-12-19T07:54:35,005 warning: no files found matching 'CONTRIBUTING.md' 2022-12-19T07:54:35,006 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-19T07:54:35,008 adding license file 'LICENSE' 2022-12-19T07:54:35,014 writing manifest file 'src/moffragmentor.egg-info/SOURCES.txt' 2022-12-19T07:54:35,018 /tmp/pip-build-env-asub_5o7/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'moffragmentor.utils.data' as data is deprecated, please list it in `packages`. 2022-12-19T07:54:35,018 !! 2022-12-19T07:54:35,019 ############################ 2022-12-19T07:54:35,019 # Package would be ignored # 2022-12-19T07:54:35,019 ############################ 2022-12-19T07:54:35,019 Python recognizes 'moffragmentor.utils.data' as an importable package, 2022-12-19T07:54:35,019 but it is not listed in the `packages` configuration of setuptools. 2022-12-19T07:54:35,019 'moffragmentor.utils.data' has been automatically added to the distribution only 2022-12-19T07:54:35,020 because it may contain data files, but this behavior is likely to change 2022-12-19T07:54:35,020 in future versions of setuptools (and therefore is considered deprecated). 2022-12-19T07:54:35,020 Please make sure that 'moffragmentor.utils.data' is included as a package by using 2022-12-19T07:54:35,020 the `packages` configuration field or the proper discovery methods 2022-12-19T07:54:35,020 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-19T07:54:35,020 instead of `find_packages(...)`/`find:`). 2022-12-19T07:54:35,021 You can read more about "package discovery" and "data files" on setuptools 2022-12-19T07:54:35,021 documentation page. 2022-12-19T07:54:35,021 !! 2022-12-19T07:54:35,021 check.warn(importable) 2022-12-19T07:54:35,022 copying src/moffragmentor/Systre-19.6.0.jar -> build/lib/moffragmentor 2022-12-19T07:54:35,065 copying src/moffragmentor/systre.license -> build/lib/moffragmentor 2022-12-19T07:54:35,068 creating build/lib/moffragmentor/utils/data 2022-12-19T07:54:35,069 copying src/moffragmentor/utils/data/atom_typing_radii.yml -> build/lib/moffragmentor/utils/data 2022-12-19T07:54:35,074 copying src/moffragmentor/utils/data/li_radii.yml -> build/lib/moffragmentor/utils/data 2022-12-19T07:54:35,081 copying src/moffragmentor/utils/data/tuned_vesta.yml -> build/lib/moffragmentor/utils/data 2022-12-19T07:54:35,105 installing to build/bdist.linux-armv7l/wheel 2022-12-19T07:54:35,105 running install 2022-12-19T07:54:35,131 running install_lib 2022-12-19T07:54:35,138 creating build/bdist.linux-armv7l 2022-12-19T07:54:35,138 creating build/bdist.linux-armv7l/wheel 2022-12-19T07:54:35,140 creating build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,142 copying build/lib/moffragmentor/systre.license -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,145 copying build/lib/moffragmentor/Systre-19.6.0.jar -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,179 copying build/lib/moffragmentor/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,181 creating build/bdist.linux-armv7l/wheel/moffragmentor/cli 2022-12-19T07:54:35,182 copying build/lib/moffragmentor/cli/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/cli 2022-12-19T07:54:35,185 creating build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,186 copying build/lib/moffragmentor/utils/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,189 copying build/lib/moffragmentor/utils/systre.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,191 copying build/lib/moffragmentor/utils/mol_compare.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,193 copying build/lib/moffragmentor/utils/errors.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,195 copying build/lib/moffragmentor/utils/periodic_graph.py -> build/bdist.linux-armv7l/wheel/moffragmentor/utils 2022-12-19T07:54:35,197 creating build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-12-19T07:54:35,198 copying build/lib/moffragmentor/utils/data/tuned_vesta.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-12-19T07:54:35,202 copying build/lib/moffragmentor/utils/data/atom_typing_radii.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-12-19T07:54:35,206 copying build/lib/moffragmentor/utils/data/li_radii.yml -> build/bdist.linux-armv7l/wheel/moffragmentor/utils/data 2022-12-19T07:54:35,214 creating build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,215 copying build/lib/moffragmentor/fragmentor/branching_points.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,218 copying build/lib/moffragmentor/fragmentor/splitter.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,221 copying build/lib/moffragmentor/fragmentor/_graphsearch.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,223 copying build/lib/moffragmentor/fragmentor/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,226 copying build/lib/moffragmentor/fragmentor/_no_core_linker.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,228 copying build/lib/moffragmentor/fragmentor/molfromgraph.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,231 copying build/lib/moffragmentor/fragmentor/nodelocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,234 copying build/lib/moffragmentor/fragmentor/filter.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,236 copying build/lib/moffragmentor/fragmentor/solventlocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,239 copying build/lib/moffragmentor/fragmentor/linkerlocator.py -> build/bdist.linux-armv7l/wheel/moffragmentor/fragmentor 2022-12-19T07:54:35,242 creating build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-12-19T07:54:35,243 copying build/lib/moffragmentor/molecule/nonsbumolecule.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-12-19T07:54:35,246 copying build/lib/moffragmentor/molecule/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-12-19T07:54:35,248 copying build/lib/moffragmentor/molecule/nonsbumoleculecollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/molecule 2022-12-19T07:54:35,250 copying build/lib/moffragmentor/mof.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,253 copying build/lib/moffragmentor/version.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,256 creating build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-12-19T07:54:35,257 copying build/lib/moffragmentor/harvester/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-12-19T07:54:35,259 copying build/lib/moffragmentor/harvester/harvest_building_blocks.py -> build/bdist.linux-armv7l/wheel/moffragmentor/harvester 2022-12-19T07:54:35,262 creating build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,264 copying build/lib/moffragmentor/sbu/sbu.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,267 copying build/lib/moffragmentor/sbu/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,269 copying build/lib/moffragmentor/sbu/node.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,272 copying build/lib/moffragmentor/sbu/nodecollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,274 copying build/lib/moffragmentor/sbu/linker.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,276 copying build/lib/moffragmentor/sbu/sbucollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,278 copying build/lib/moffragmentor/sbu/linkercollection.py -> build/bdist.linux-armv7l/wheel/moffragmentor/sbu 2022-12-19T07:54:35,281 copying build/lib/moffragmentor/net.py -> build/bdist.linux-armv7l/wheel/moffragmentor 2022-12-19T07:54:35,285 creating build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-12-19T07:54:35,286 copying build/lib/moffragmentor/descriptors/__init__.py -> build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-12-19T07:54:35,288 copying build/lib/moffragmentor/descriptors/sbu_dimensionality.py -> build/bdist.linux-armv7l/wheel/moffragmentor/descriptors 2022-12-19T07:54:35,290 running install_egg_info 2022-12-19T07:54:35,301 Copying src/moffragmentor.egg-info to build/bdist.linux-armv7l/wheel/moffragmentor-0.0.5-py3.9.egg-info 2022-12-19T07:54:35,319 running install_scripts 2022-12-19T07:54:35,425 creating build/bdist.linux-armv7l/wheel/moffragmentor-0.0.5.dist-info/WHEEL 2022-12-19T07:54:35,428 creating '/tmp/pip-wheel-4h2er749/.tmp-u7s4lj93/moffragmentor-0.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-19T07:54:35,621 adding 'moffragmentor/Systre-19.6.0.jar' 2022-12-19T07:54:35,632 adding 'moffragmentor/__init__.py' 2022-12-19T07:54:35,635 adding 'moffragmentor/mof.py' 2022-12-19T07:54:35,638 adding 'moffragmentor/net.py' 2022-12-19T07:54:35,640 adding 'moffragmentor/systre.license' 2022-12-19T07:54:35,642 adding 'moffragmentor/version.py' 2022-12-19T07:54:35,644 adding 'moffragmentor/cli/__init__.py' 2022-12-19T07:54:35,646 adding 'moffragmentor/descriptors/__init__.py' 2022-12-19T07:54:35,647 adding 'moffragmentor/descriptors/sbu_dimensionality.py' 2022-12-19T07:54:35,649 adding 'moffragmentor/fragmentor/__init__.py' 2022-12-19T07:54:35,651 adding 'moffragmentor/fragmentor/_graphsearch.py' 2022-12-19T07:54:35,653 adding 'moffragmentor/fragmentor/_no_core_linker.py' 2022-12-19T07:54:35,655 adding 'moffragmentor/fragmentor/branching_points.py' 2022-12-19T07:54:35,656 adding 'moffragmentor/fragmentor/filter.py' 2022-12-19T07:54:35,658 adding 'moffragmentor/fragmentor/linkerlocator.py' 2022-12-19T07:54:35,659 adding 'moffragmentor/fragmentor/molfromgraph.py' 2022-12-19T07:54:35,662 adding 'moffragmentor/fragmentor/nodelocator.py' 2022-12-19T07:54:35,663 adding 'moffragmentor/fragmentor/solventlocator.py' 2022-12-19T07:54:35,665 adding 'moffragmentor/fragmentor/splitter.py' 2022-12-19T07:54:35,667 adding 'moffragmentor/harvester/__init__.py' 2022-12-19T07:54:35,669 adding 'moffragmentor/harvester/harvest_building_blocks.py' 2022-12-19T07:54:35,670 adding 'moffragmentor/molecule/__init__.py' 2022-12-19T07:54:35,672 adding 'moffragmentor/molecule/nonsbumolecule.py' 2022-12-19T07:54:35,673 adding 'moffragmentor/molecule/nonsbumoleculecollection.py' 2022-12-19T07:54:35,675 adding 'moffragmentor/sbu/__init__.py' 2022-12-19T07:54:35,677 adding 'moffragmentor/sbu/linker.py' 2022-12-19T07:54:35,678 adding 'moffragmentor/sbu/linkercollection.py' 2022-12-19T07:54:35,680 adding 'moffragmentor/sbu/node.py' 2022-12-19T07:54:35,681 adding 'moffragmentor/sbu/nodecollection.py' 2022-12-19T07:54:35,683 adding 'moffragmentor/sbu/sbu.py' 2022-12-19T07:54:35,685 adding 'moffragmentor/sbu/sbucollection.py' 2022-12-19T07:54:35,688 adding 'moffragmentor/utils/__init__.py' 2022-12-19T07:54:35,689 adding 'moffragmentor/utils/errors.py' 2022-12-19T07:54:35,690 adding 'moffragmentor/utils/mol_compare.py' 2022-12-19T07:54:35,692 adding 'moffragmentor/utils/periodic_graph.py' 2022-12-19T07:54:35,693 adding 'moffragmentor/utils/systre.py' 2022-12-19T07:54:35,706 adding 'moffragmentor/utils/data/atom_typing_radii.yml' 2022-12-19T07:54:35,731 adding 'moffragmentor/utils/data/li_radii.yml' 2022-12-19T07:54:35,736 adding 'moffragmentor/utils/data/tuned_vesta.yml' 2022-12-19T07:54:35,739 adding 'moffragmentor-0.0.5.dist-info/LICENSE' 2022-12-19T07:54:35,740 adding 'moffragmentor-0.0.5.dist-info/METADATA' 2022-12-19T07:54:35,741 adding 'moffragmentor-0.0.5.dist-info/WHEEL' 2022-12-19T07:54:35,742 adding 'moffragmentor-0.0.5.dist-info/entry_points.txt' 2022-12-19T07:54:35,743 adding 'moffragmentor-0.0.5.dist-info/top_level.txt' 2022-12-19T07:54:35,745 adding 'moffragmentor-0.0.5.dist-info/RECORD' 2022-12-19T07:54:35,772 removing build/bdist.linux-armv7l/wheel 2022-12-19T07:54:35,923 Building wheel for moffragmentor (pyproject.toml): finished with status 'done' 2022-12-19T07:54:35,968 Created wheel for moffragmentor: filename=moffragmentor-0.0.5-py3-none-any.whl size=1669352 sha256=bf0d8c3b0a6fcdca954cf82b1f1ba283985ccc67b13f6aa41947aaa1fd020d77 2022-12-19T07:54:35,969 Stored in directory: /tmp/pip-ephem-wheel-cache-ocr3re87/wheels/f9/7e/ec/c86a14eb18f3575c1374c0f73b0f1103459f76c2a588bf874e 2022-12-19T07:54:35,983 Successfully built moffragmentor 2022-12-19T07:54:36,038 Removed build tracker: '/tmp/pip-build-tracker-d2505u1l'