2022-12-20T17:55:19,035 Created temporary directory: /tmp/pip-ephem-wheel-cache-ed8yd7uk 2022-12-20T17:55:19,040 Created temporary directory: /tmp/pip-build-tracker-_bhhze9z 2022-12-20T17:55:19,041 Initialized build tracking at /tmp/pip-build-tracker-_bhhze9z 2022-12-20T17:55:19,041 Created build tracker: /tmp/pip-build-tracker-_bhhze9z 2022-12-20T17:55:19,041 Entered build tracker: /tmp/pip-build-tracker-_bhhze9z 2022-12-20T17:55:19,042 Created temporary directory: /tmp/pip-wheel-_tdekyn8 2022-12-20T17:55:19,050 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-20T17:55:19,056 Created temporary directory: /tmp/pip-ephem-wheel-cache-fg8cqt0i 2022-12-20T17:55:19,106 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-20T17:55:19,113 2 location(s) to search for versions of sequana: 2022-12-20T17:55:19,113 * https://pypi.org/simple/sequana/ 2022-12-20T17:55:19,113 * https://www.piwheels.org/simple/sequana/ 2022-12-20T17:55:19,114 Fetching project page and analyzing links: https://pypi.org/simple/sequana/ 2022-12-20T17:55:19,115 Getting page https://pypi.org/simple/sequana/ 2022-12-20T17:55:19,119 Found index url https://pypi.org/simple 2022-12-20T17:55:19,322 Fetched page https://pypi.org/simple/sequana/ as application/vnd.pypi.simple.v1+json 2022-12-20T17:55:19,360 Found link https://files.pythonhosted.org/packages/36/8c/248dad81c4c7774c280a03c432fb07aa977a5488ab25e4cf665e34de16db/sequana-0.0.2.tar.gz (from 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https://files.pythonhosted.org/packages/38/50/59e74f88c91147f9f4f21fc6242e1a8d2c04f6d32d9eb6b608f1e3b3c2b8/sequana-0.1.20.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.20 2022-12-20T17:55:19,380 Found link https://files.pythonhosted.org/packages/a9/cf/773cd3e5ff3a822e5910a3ae88347c75a02ed41d749be7166d4cc5cd4e4b/sequana-0.1.21.tar.gz (from https://pypi.org/simple/sequana/), version: 0.1.21 2022-12-20T17:55:19,381 Found link https://files.pythonhosted.org/packages/90/4d/0d334b9e687adfa8bf2f98ecc3f4e5173d72276d296269087b2390fc9aef/sequana-0.2.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.0 2022-12-20T17:55:19,382 Found link https://files.pythonhosted.org/packages/56/71/56958a396df98be965163812a97f369c568b4672344496447e66b201134a/sequana-0.2.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.2.1 2022-12-20T17:55:19,382 Found link https://files.pythonhosted.org/packages/67/00/e2bbfe5ecfb468b98ae7073ddb1b5928e74f012275f4c211319cd0474c53/sequana-0.3.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.3.0 2022-12-20T17:55:19,383 Found link https://files.pythonhosted.org/packages/3f/32/35cc61a7f63d6a51d9425e5bbb2628bc1aec9248a73cf477ec3e6c9db2d4/sequana-0.4.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.0 2022-12-20T17:55:19,384 Found link https://files.pythonhosted.org/packages/f5/b3/66d55de5b105eb01d6cab89f5964b96c2e5b5ae70026e9e86e3616187c70/sequana-0.4.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.1 2022-12-20T17:55:19,384 Found link https://files.pythonhosted.org/packages/3d/43/9d14649acc8e7d79de1cb88ac3844704563f852f5f80f540762dc6740e8c/sequana-0.4.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.4.2 2022-12-20T17:55:19,385 Found link https://files.pythonhosted.org/packages/e0/89/812385ad0c00c0ea9d9931aeea5be88c99a9d82bf9e8313cea9d3dbab343/sequana-0.5.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.0 2022-12-20T17:55:19,386 Found link https://files.pythonhosted.org/packages/71/35/a2e9226296bed94cabbcea960f0acab8027a4f01fc0874d700e2dde5641f/sequana-0.5.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.1 2022-12-20T17:55:19,387 Found link https://files.pythonhosted.org/packages/8e/fc/78c990cee1896fc1b84603460008adea30361089c11022e3642d7bd04cdd/sequana-0.5.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.5.2 2022-12-20T17:55:19,387 Found link https://files.pythonhosted.org/packages/3a/f9/36ae041dd3b7603937bfc6395814d18fac2a56882b9c554d1fa82fb7c2bc/sequana-0.6.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.0 2022-12-20T17:55:19,388 Found link https://files.pythonhosted.org/packages/50/fe/782989640fe0f99a224d69dfe48f5c8466b95f649b345e2e8faf3481e93f/sequana-0.6.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.1 2022-12-20T17:55:19,389 Found link https://files.pythonhosted.org/packages/d5/71/f1e84cc20f16f510ae4ea4e91f2b7a253b2ea5a41b65d2806a1f51914caa/sequana-0.6.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.2 2022-12-20T17:55:19,389 Found link https://files.pythonhosted.org/packages/50/92/9e171dd9b6d5f18a257ee25b2f293b2ca5a246cc61290bcc36ab28e13c4b/sequana-0.6.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3 2022-12-20T17:55:19,390 Found link https://files.pythonhosted.org/packages/e1/c8/6604f2cae69b3a1f385ef23c793d658216ef7dbf3327fc83c740d62d4d57/sequana-0.6.3.post1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.6.3.post1 2022-12-20T17:55:19,391 Found link 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https://files.pythonhosted.org/packages/49/60/8f18bb5e3810e9a920660fd004dbf6732ebdb277980c67c872cda1a710e8/sequana-0.14.0.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.0 2022-12-20T17:55:19,416 Found link https://files.pythonhosted.org/packages/89/da/2b2cbc7011b549eab9e7cad1bd6380939f760ef1ad189a8a8c8bd13c1416/sequana-0.14.1.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.1 2022-12-20T17:55:19,417 Found link https://files.pythonhosted.org/packages/05/c4/d113f6b8b8266e64fdbce7c645dc100e177e62b65f5de91c1ed0edd69f7c/sequana-0.14.2.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.2 2022-12-20T17:55:19,418 Found link https://files.pythonhosted.org/packages/0e/66/cca72effbb41d5ff34f2fc49e3b4ddc804245547df2f2e57ab7e534a52c0/sequana-0.14.3.tar.gz (from https://pypi.org/simple/sequana/), version: 0.14.3 2022-12-20T17:55:19,418 Found link 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2022-12-20T17:55:21,505 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.2.0-py3-none-any.whl#sha256=3f93bab506968797bfa09bd546a7890f00035664062d87d06c5cc0cae18ae47d (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,505 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.21-py3-none-any.whl#sha256=39c81be55199636ec0613bef138ee06c6484b7fe1fe77cfecd372a3c757a1060 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,506 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.20-py3-none-any.whl#sha256=443bc96ad7fb6fd2e4f68246cd5e0d14513ec95d0b41dcad255eff04d5ec5448 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,506 Skipping link: No binaries permitted for sequana: 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2022-12-20T17:55:21,508 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.15-py3-none-any.whl#sha256=d285757bc8a46c7b331b3a27a79a559517e57b337e0d1381e8049e125f91b558 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,509 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.14-py3-none-any.whl#sha256=ced50d95b3a00f2f8103c06a1cb6bb4097d8d4a08c461bf26525f6afe8ff75e0 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,509 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.13-py3-none-any.whl#sha256=d79163ff3005e50c03bd3d241bd28c77fc27b149ca3cafcaac73dd11f3da756a (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,510 Skipping link: No binaries permitted for sequana: 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2022-12-20T17:55:21,512 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.8-py3-none-any.whl#sha256=25d68d94847d23aecd8d532f01ab95b7a8318fb5dc9ad5bbc87731b0968dc4ea (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,513 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.7-py3-none-any.whl#sha256=ccad69fd14b518346bb120b0790f15e4e949a563a0b1e560b9410a9d10d00f42 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,513 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.6-py3-none-any.whl#sha256=610326506e644e9df180931d8a20a48852a8196ba9c4d0e9aa6d1acb88d4e615 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,514 Skipping link: No binaries permitted for sequana: 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2022-12-20T17:55:21,516 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.1.0-py3-none-any.whl#sha256=979f04997f10759229e1cc7030a78f086ca36d54a9a68d48743734700cc907f6 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,516 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.3-py3-none-any.whl#sha256=2c7fbcfed3e6a09a9088f8373053f9256dda94deca725dd0f129f8a51130323c (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,517 Skipping link: No binaries permitted for sequana: https://www.piwheels.org/simple/sequana/sequana-0.0.2-py3-none-any.whl#sha256=8565432ebe4263c2fd81f958a88814fd932deef7d8e488854db16600a39fc4b9 (from https://www.piwheels.org/simple/sequana/) 2022-12-20T17:55:21,517 Skipping link: not a file: https://www.piwheels.org/simple/sequana/ 2022-12-20T17:55:21,518 Skipping link: not a file: https://pypi.org/simple/sequana/ 2022-12-20T17:55:21,581 Given no hashes to check 1 links for project 'sequana': discarding no candidates 2022-12-20T17:55:21,612 Collecting sequana==0.14.6 2022-12-20T17:55:21,617 Created temporary directory: /tmp/pip-unpack-zg8xefrz 2022-12-20T17:55:22,301 Downloading sequana-0.14.6.tar.gz (4.2 MB) 2022-12-20T17:55:26,661 Added sequana==0.14.6 from https://files.pythonhosted.org/packages/f8/80/d0d913a03f6e7bf8d9b77812d9bc834793478d41f80bc483a91bbb70a58b/sequana-0.14.6.tar.gz to build tracker '/tmp/pip-build-tracker-_bhhze9z' 2022-12-20T17:55:26,665 Running setup.py (path:/tmp/pip-wheel-_tdekyn8/sequana_5922973d8feb401084e88ee12b655b18/setup.py) egg_info for package sequana 2022-12-20T17:55:26,666 Created temporary directory: /tmp/pip-pip-egg-info-6tc28c20 2022-12-20T17:55:26,667 Preparing metadata (setup.py): started 2022-12-20T17:55:26,669 Running command python setup.py egg_info 2022-12-20T17:55:29,616 running egg_info 2022-12-20T17:55:29,621 creating /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info 2022-12-20T17:55:29,683 writing /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/PKG-INFO 2022-12-20T17:55:29,689 writing dependency_links to /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/dependency_links.txt 2022-12-20T17:55:29,695 writing entry points to /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/entry_points.txt 2022-12-20T17:55:29,698 writing requirements to /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/requires.txt 2022-12-20T17:55:29,701 writing top-level names to /tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/top_level.txt 2022-12-20T17:55:29,703 writing manifest file '/tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/SOURCES.txt' 2022-12-20T17:55:30,387 reading manifest file '/tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/SOURCES.txt' 2022-12-20T17:55:30,390 reading manifest template 'MANIFEST.in' 2022-12-20T17:55:30,396 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-20T17:55:30,399 warning: no previously-included files matching '*pyc' found under directory '*' 2022-12-20T17:55:30,909 warning: no files found matching 'test/requirements*txt' 2022-12-20T17:55:30,912 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-12-20T17:55:30,915 warning: no previously-included files matching '*' found under directory 'test' 2022-12-20T17:55:30,917 warning: no previously-included files matching '*' found under directory 'doc' 2022-12-20T17:55:30,919 warning: no previously-included files found matching 'sequana/rm2.py' 2022-12-20T17:55:30,919 adding license file 'LICENSE' 2022-12-20T17:55:30,958 writing manifest file '/tmp/pip-pip-egg-info-6tc28c20/sequana.egg-info/SOURCES.txt' 2022-12-20T17:55:31,161 Preparing metadata (setup.py): finished with status 'done' 2022-12-20T17:55:31,178 Source in /tmp/pip-wheel-_tdekyn8/sequana_5922973d8feb401084e88ee12b655b18 has version 0.14.6, which satisfies requirement sequana==0.14.6 from https://files.pythonhosted.org/packages/f8/80/d0d913a03f6e7bf8d9b77812d9bc834793478d41f80bc483a91bbb70a58b/sequana-0.14.6.tar.gz 2022-12-20T17:55:31,180 Removed sequana==0.14.6 from https://files.pythonhosted.org/packages/f8/80/d0d913a03f6e7bf8d9b77812d9bc834793478d41f80bc483a91bbb70a58b/sequana-0.14.6.tar.gz from build tracker '/tmp/pip-build-tracker-_bhhze9z' 2022-12-20T17:55:31,193 Created temporary directory: /tmp/pip-unpack-4k0i0tzu 2022-12-20T17:55:31,195 Building wheels for collected packages: sequana 2022-12-20T17:55:31,204 Created temporary directory: /tmp/pip-wheel-v7gc45tp 2022-12-20T17:55:31,205 Building wheel for sequana (setup.py): started 2022-12-20T17:55:31,207 Destination directory: /tmp/pip-wheel-v7gc45tp 2022-12-20T17:55:31,207 Running command python setup.py bdist_wheel 2022-12-20T17:55:34,126 running bdist_wheel 2022-12-20T17:55:34,894 running build 2022-12-20T17:55:34,895 running build_py 2022-12-20T17:55:34,970 creating build 2022-12-20T17:55:34,971 creating build/lib 2022-12-20T17:55:34,972 creating build/lib/sequana 2022-12-20T17:55:34,974 copying sequana/frip.py -> build/lib/sequana 2022-12-20T17:55:34,978 copying sequana/rnadiff.py -> build/lib/sequana 2022-12-20T17:55:34,983 copying sequana/phantom.py -> build/lib/sequana 2022-12-20T17:55:34,987 copying sequana/jsontool.py -> build/lib/sequana 2022-12-20T17:55:34,991 copying sequana/fasta_gff_correction.py -> build/lib/sequana 2022-12-20T17:55:34,994 copying sequana/misc.py -> build/lib/sequana 2022-12-20T17:55:34,998 copying sequana/__init__.py -> build/lib/sequana 2022-12-20T17:55:35,001 copying sequana/trf.py -> build/lib/sequana 2022-12-20T17:55:35,005 copying sequana/snpeff.py -> build/lib/sequana 2022-12-20T17:55:35,009 copying sequana/sniffer.py -> build/lib/sequana 2022-12-20T17:55:35,012 copying sequana/fastqc.py -> build/lib/sequana 2022-12-20T17:55:35,016 copying sequana/gtf.py -> build/lib/sequana 2022-12-20T17:55:35,019 copying sequana/cigar.py -> build/lib/sequana 2022-12-20T17:55:35,024 copying sequana/kmer.py -> build/lib/sequana 2022-12-20T17:55:35,027 copying sequana/gff3.py -> build/lib/sequana 2022-12-20T17:55:35,032 copying sequana/canu_scanner.py -> build/lib/sequana 2022-12-20T17:55:35,036 copying sequana/ribodesigner.py -> build/lib/sequana 2022-12-20T17:55:35,040 copying sequana/homer.py -> build/lib/sequana 2022-12-20T17:55:35,043 copying sequana/taxonomy.py -> build/lib/sequana 2022-12-20T17:55:35,048 copying sequana/bedtools.py -> build/lib/sequana 2022-12-20T17:55:35,055 copying sequana/freebayes_bcf_filter.py -> build/lib/sequana 2022-12-20T17:55:35,059 copying sequana/kegg.py -> build/lib/sequana 2022-12-20T17:55:35,062 copying sequana/cnv.py -> build/lib/sequana 2022-12-20T17:55:35,065 copying sequana/salmon.py -> build/lib/sequana 2022-12-20T17:55:35,069 copying sequana/macs3.py -> build/lib/sequana 2022-12-20T17:55:35,074 copying sequana/assembly.py -> build/lib/sequana 2022-12-20T17:55:35,078 copying sequana/bed.py -> build/lib/sequana 2022-12-20T17:55:35,081 copying sequana/databases.py -> build/lib/sequana 2022-12-20T17:55:35,086 copying sequana/pacbio_amplicon.py -> build/lib/sequana 2022-12-20T17:55:35,089 copying sequana/phred.py -> build/lib/sequana 2022-12-20T17:55:35,094 copying sequana/stats.py -> build/lib/sequana 2022-12-20T17:55:35,097 copying sequana/lazy.py -> build/lib/sequana 2022-12-20T17:55:35,100 copying sequana/compare.py -> build/lib/sequana 2022-12-20T17:55:35,105 copying sequana/vcf_filter.py -> build/lib/sequana 2022-12-20T17:55:35,109 copying sequana/featurecounts.py -> build/lib/sequana 2022-12-20T17:55:35,113 copying sequana/fasta.py -> build/lib/sequana 2022-12-20T17:55:35,117 copying sequana/pacbio.py -> build/lib/sequana 2022-12-20T17:55:35,123 copying sequana/vcftools.py -> build/lib/sequana 2022-12-20T17:55:35,127 copying sequana/vst.py -> build/lib/sequana 2022-12-20T17:55:35,130 copying sequana/contigs.py -> build/lib/sequana 2022-12-20T17:55:35,134 copying sequana/krona.py -> build/lib/sequana 2022-12-20T17:55:35,137 copying sequana/mh.py -> build/lib/sequana 2022-12-20T17:55:35,141 copying sequana/idr.py -> build/lib/sequana 2022-12-20T17:55:35,145 copying sequana/cpg_islands.py -> build/lib/sequana 2022-12-20T17:55:35,148 copying sequana/coverage.py -> build/lib/sequana 2022-12-20T17:55:35,152 copying sequana/codon.py -> build/lib/sequana 2022-12-20T17:55:35,156 copying sequana/bamtools.py -> build/lib/sequana 2022-12-20T17:55:35,162 copying sequana/summary.py -> build/lib/sequana 2022-12-20T17:55:35,166 copying sequana/genbank.py -> build/lib/sequana 2022-12-20T17:55:35,170 copying sequana/fastq.py -> build/lib/sequana 2022-12-20T17:55:35,176 copying sequana/isoseq.py -> build/lib/sequana 2022-12-20T17:55:35,181 copying sequana/freebayes_vcf_filter.py -> build/lib/sequana 2022-12-20T17:55:35,185 copying sequana/lazyimports.py -> build/lib/sequana 2022-12-20T17:55:35,188 copying sequana/mixture.py -> build/lib/sequana 2022-12-20T17:55:35,193 copying sequana/itol.py -> build/lib/sequana 2022-12-20T17:55:35,197 copying sequana/protein.py -> build/lib/sequana 2022-12-20T17:55:35,200 copying sequana/errors.py -> build/lib/sequana 2022-12-20T17:55:35,203 copying sequana/mgi.py -> build/lib/sequana 2022-12-20T17:55:35,206 copying sequana/demultiplex.py -> build/lib/sequana 2022-12-20T17:55:35,210 copying sequana/running_median.py -> build/lib/sequana 2022-12-20T17:55:35,214 copying sequana/criteria.py -> build/lib/sequana 2022-12-20T17:55:35,218 copying sequana/iuapc.py -> build/lib/sequana 2022-12-20T17:55:35,222 copying sequana/sequence.py -> build/lib/sequana 2022-12-20T17:55:35,228 copying sequana/iem.py -> build/lib/sequana 2022-12-20T17:55:35,232 copying sequana/tools.py -> build/lib/sequana 2022-12-20T17:55:35,236 copying sequana/find_motif.py -> build/lib/sequana 2022-12-20T17:55:35,240 copying sequana/datatools.py -> build/lib/sequana 2022-12-20T17:55:35,245 creating build/lib/sequana/kraken 2022-12-20T17:55:35,246 copying sequana/kraken/__init__.py -> build/lib/sequana/kraken 2022-12-20T17:55:35,249 copying sequana/kraken/analysis.py -> build/lib/sequana/kraken 2022-12-20T17:55:35,255 copying sequana/kraken/multikraken.py -> build/lib/sequana/kraken 2022-12-20T17:55:35,260 creating build/lib/sequana/resources 2022-12-20T17:55:35,261 copying sequana/resources/__init__.py -> build/lib/sequana/resources 2022-12-20T17:55:35,266 creating build/lib/sequana/plots 2022-12-20T17:55:35,267 copying sequana/plots/__init__.py -> build/lib/sequana/plots 2022-12-20T17:55:35,270 copying sequana/plots/canvasjs_linegraph.py -> build/lib/sequana/plots 2022-12-20T17:55:35,274 copying sequana/plots/canvasjs_base.py -> build/lib/sequana/plots 2022-12-20T17:55:35,280 creating build/lib/sequana/viz 2022-12-20T17:55:35,282 copying sequana/viz/anova.py -> build/lib/sequana/viz 2022-12-20T17:55:35,286 copying sequana/viz/volcano.py -> build/lib/sequana/viz 2022-12-20T17:55:35,290 copying sequana/viz/__init__.py -> build/lib/sequana/viz 2022-12-20T17:55:35,298 copying sequana/viz/linkage.py -> build/lib/sequana/viz 2022-12-20T17:55:35,311 copying sequana/viz/clusterisation.py -> build/lib/sequana/viz 2022-12-20T17:55:35,315 copying sequana/viz/scatter.py -> build/lib/sequana/viz 2022-12-20T17:55:35,319 copying sequana/viz/hinton.py -> build/lib/sequana/viz 2022-12-20T17:55:35,322 copying sequana/viz/boxplot.py -> build/lib/sequana/viz 2022-12-20T17:55:35,325 copying sequana/viz/isomap.py -> build/lib/sequana/viz 2022-12-20T17:55:35,329 copying sequana/viz/pca.py -> build/lib/sequana/viz 2022-12-20T17:55:35,332 copying sequana/viz/mds.py -> build/lib/sequana/viz 2022-12-20T17:55:35,336 copying sequana/viz/core.py -> build/lib/sequana/viz 2022-12-20T17:55:35,339 copying sequana/viz/venn.py -> build/lib/sequana/viz 2022-12-20T17:55:35,342 copying sequana/viz/imshow.py -> build/lib/sequana/viz 2022-12-20T17:55:35,346 copying sequana/viz/dendogram.py -> build/lib/sequana/viz 2022-12-20T17:55:35,350 copying sequana/viz/hist2d.py -> build/lib/sequana/viz 2022-12-20T17:55:35,354 copying sequana/viz/corrplot.py -> build/lib/sequana/viz 2022-12-20T17:55:35,359 copying sequana/viz/heatmap.py -> build/lib/sequana/viz 2022-12-20T17:55:35,365 creating build/lib/sequana/rules 2022-12-20T17:55:35,367 copying sequana/rules/__init__.py -> build/lib/sequana/rules 2022-12-20T17:55:35,374 creating build/lib/sequana/utils 2022-12-20T17:55:35,379 copying sequana/utils/__init__.py -> build/lib/sequana/utils 2022-12-20T17:55:35,389 copying sequana/utils/df2html.py -> build/lib/sequana/utils 2022-12-20T17:55:35,394 copying sequana/utils/pandas.py -> build/lib/sequana/utils 2022-12-20T17:55:35,398 copying sequana/utils/config.py -> build/lib/sequana/utils 2022-12-20T17:55:35,401 copying sequana/utils/datatables_js.py -> build/lib/sequana/utils 2022-12-20T17:55:35,406 copying sequana/utils/tree.py -> build/lib/sequana/utils 2022-12-20T17:55:35,410 copying sequana/utils/singleton.py -> build/lib/sequana/utils 2022-12-20T17:55:35,414 creating build/lib/sequana/scripts 2022-12-20T17:55:35,416 copying sequana/scripts/__init__.py -> build/lib/sequana/scripts 2022-12-20T17:55:35,419 copying sequana/scripts/taxonomy.py -> build/lib/sequana/scripts 2022-12-20T17:55:35,423 copying sequana/scripts/coverage.py -> build/lib/sequana/scripts 2022-12-20T17:55:35,428 copying sequana/scripts/substractor.py -> build/lib/sequana/scripts 2022-12-20T17:55:35,434 creating build/lib/sequana/enrichment 2022-12-20T17:55:35,435 copying sequana/enrichment/__init__.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,438 copying sequana/enrichment/plot_go_terms.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,443 copying sequana/enrichment/kegg.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,448 copying sequana/enrichment/gsea.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,451 copying sequana/enrichment/panther.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,456 copying sequana/enrichment/ontology.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,459 copying sequana/enrichment/uniprot_enrichment.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,463 copying sequana/enrichment/quickgo.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,467 copying sequana/enrichment/mart.py -> build/lib/sequana/enrichment 2022-12-20T17:55:35,472 creating build/lib/sequana/multiqc 2022-12-20T17:55:35,473 copying sequana/multiqc/__init__.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,477 copying sequana/multiqc/laa.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,480 copying sequana/multiqc/isoseq_qc.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,483 copying sequana/multiqc/kraken.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,487 copying sequana/multiqc/pacbio_amplicon.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,490 copying sequana/multiqc/config.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,493 copying sequana/multiqc/coverage.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,497 copying sequana/multiqc/isoseq.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,500 copying sequana/multiqc/plots.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,504 copying sequana/multiqc/pacbio_qc.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,508 copying sequana/multiqc/bamtools_stats.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,511 copying sequana/multiqc/quality_control.py -> build/lib/sequana/multiqc 2022-12-20T17:55:35,518 creating build/lib/sequana/modules_report 2022-12-20T17:55:35,519 copying sequana/modules_report/rnadiff.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,524 copying sequana/modules_report/cutadapt.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,536 copying sequana/modules_report/base_module.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,540 copying sequana/modules_report/phix.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,545 copying sequana/modules_report/__init__.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,548 copying sequana/modules_report/trf.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,551 copying sequana/modules_report/pacbio_input_bam.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,554 copying sequana/modules_report/fastqc.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,557 copying sequana/modules_report/kraken.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,561 copying sequana/modules_report/panther_enrichment.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,565 copying sequana/modules_report/multi_summary.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,569 copying sequana/modules_report/fastq_stats.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,573 copying sequana/modules_report/kegg_enrichment.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,576 copying sequana/modules_report/coverage.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,581 copying sequana/modules_report/joint_calling.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,584 copying sequana/modules_report/bamqc.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,587 copying sequana/modules_report/summary.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,591 copying sequana/modules_report/uniprot_enrichment.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,595 copying sequana/modules_report/variant_calling.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,599 copying sequana/modules_report/quast.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,602 copying sequana/modules_report/bwa_bam_to_fastq.py -> build/lib/sequana/modules_report 2022-12-20T17:55:35,606 creating build/lib/sequana/resources/snpeff 2022-12-20T17:55:35,607 copying sequana/resources/snpeff/__init__.py -> build/lib/sequana/resources/snpeff 2022-12-20T17:55:35,611 creating build/lib/sequana/resources/canvas 2022-12-20T17:55:35,612 copying sequana/resources/canvas/__init__.py -> build/lib/sequana/resources/canvas 2022-12-20T17:55:35,615 copying sequana/resources/canvas/bar.py -> build/lib/sequana/resources/canvas 2022-12-20T17:55:35,619 creating build/lib/sequana/resources/js 2022-12-20T17:55:35,620 copying sequana/resources/js/__init__.py -> build/lib/sequana/resources/js 2022-12-20T17:55:35,624 creating build/lib/sequana/resources/images 2022-12-20T17:55:35,625 copying sequana/resources/images/__init__.py -> build/lib/sequana/resources/images 2022-12-20T17:55:35,629 creating build/lib/sequana/resources/templates 2022-12-20T17:55:35,630 copying sequana/resources/templates/__init__.py -> build/lib/sequana/resources/templates 2022-12-20T17:55:35,634 creating build/lib/sequana/resources/testing 2022-12-20T17:55:35,636 copying sequana/resources/testing/__init__.py -> build/lib/sequana/resources/testing 2022-12-20T17:55:35,639 creating build/lib/sequana/resources/css 2022-12-20T17:55:35,641 copying sequana/resources/css/__init__.py -> build/lib/sequana/resources/css 2022-12-20T17:55:35,645 creating build/lib/sequana/resources/examples 2022-12-20T17:55:35,646 copying sequana/resources/examples/__init__.py -> build/lib/sequana/resources/examples 2022-12-20T17:55:35,650 creating build/lib/sequana/resources/doc 2022-12-20T17:55:35,651 copying sequana/resources/doc/__init__.py -> build/lib/sequana/resources/doc 2022-12-20T17:55:35,655 creating build/lib/sequana/resources/data 2022-12-20T17:55:35,656 copying sequana/resources/data/__init__.py -> build/lib/sequana/resources/data 2022-12-20T17:55:35,660 creating build/lib/sequana/resources/doc/rnadiff_compare 2022-12-20T17:55:35,662 copying sequana/resources/doc/rnadiff_compare/__init__.py -> build/lib/sequana/resources/doc/rnadiff_compare 2022-12-20T17:55:35,666 creating build/lib/sequana/resources/doc/rnaseq_0 2022-12-20T17:55:35,667 copying sequana/resources/doc/rnaseq_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0 2022-12-20T17:55:35,671 creating build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-12-20T17:55:35,672 copying sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1 2022-12-20T17:55:35,676 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-12-20T17:55:35,678 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-12-20T17:55:35,681 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-12-20T17:55:35,683 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-12-20T17:55:35,686 creating build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-12-20T17:55:35,688 copying sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-12-20T17:55:35,692 creating build/lib/sequana/rules/deeptools 2022-12-20T17:55:35,693 copying sequana/rules/deeptools/__init__.py -> build/lib/sequana/rules/deeptools 2022-12-20T17:55:35,697 creating build/lib/sequana/rules/codecs 2022-12-20T17:55:35,699 copying sequana/rules/codecs/__init__.py -> build/lib/sequana/rules/codecs 2022-12-20T17:55:35,703 creating build/lib/sequana/rules/idr 2022-12-20T17:55:35,704 copying sequana/rules/idr/__init__.py -> build/lib/sequana/rules/idr 2022-12-20T17:55:35,708 creating build/lib/sequana/rules/picard-tools 2022-12-20T17:55:35,709 copying sequana/rules/picard-tools/__init__.py -> build/lib/sequana/rules/picard-tools 2022-12-20T17:55:35,713 creating build/lib/sequana/rules/SnpEff 2022-12-20T17:55:35,714 copying sequana/rules/SnpEff/__init__.py -> build/lib/sequana/rules/SnpEff 2022-12-20T17:55:35,719 creating build/lib/sequana/rules/sambamba 2022-12-20T17:55:35,720 copying sequana/rules/sambamba/__init__.py -> build/lib/sequana/rules/sambamba 2022-12-20T17:55:35,725 creating build/lib/sequana/rules/Pacbio 2022-12-20T17:55:35,727 copying sequana/rules/Pacbio/__init__.py -> build/lib/sequana/rules/Pacbio 2022-12-20T17:55:35,733 creating build/lib/sequana/scripts/main 2022-12-20T17:55:35,735 copying sequana/scripts/main/rnadiff.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,739 copying sequana/scripts/main/__init__.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,742 copying sequana/scripts/main/samplesheet.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,745 copying sequana/scripts/main/ribodesigner.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,749 copying sequana/scripts/main/taxonomy.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,752 copying sequana/scripts/main/gff_to_light_gff.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,755 copying sequana/scripts/main/salmon.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,759 copying sequana/scripts/main/gtf_fixer.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,762 copying sequana/scripts/main/main.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,766 copying sequana/scripts/main/feature_count.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,769 copying sequana/scripts/main/fasta.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,772 copying sequana/scripts/main/utils.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,776 copying sequana/scripts/main/biomart.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,780 copying sequana/scripts/main/gff_to_gtf.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,783 copying sequana/scripts/main/mapping.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,787 copying sequana/scripts/main/summary.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,790 copying sequana/scripts/main/enrichment_panther.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,794 copying sequana/scripts/main/fastq.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,798 copying sequana/scripts/main/lane_merging.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,802 copying sequana/scripts/main/enrichment_uniprot.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,806 copying sequana/scripts/main/rnaseq_compare.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:35,809 copying sequana/scripts/main/enrichment_kegg.py -> build/lib/sequana/scripts/main 2022-12-20T17:55:36,194 copying sequana/text.krona.html -> build/lib/sequana 2022-12-20T17:55:36,367 copying sequana/rules/README.rst -> build/lib/sequana/rules 2022-12-20T17:55:36,371 creating build/lib/sequana/rules/rulegraph 2022-12-20T17:55:36,373 copying sequana/rules/rulegraph/rulegraph.rules -> build/lib/sequana/rules/rulegraph 2022-12-20T17:55:36,378 creating build/lib/sequana/rules/salmon_index 2022-12-20T17:55:36,380 copying sequana/rules/salmon_index/salmon_index.rules -> build/lib/sequana/rules/salmon_index 2022-12-20T17:55:36,384 creating build/lib/sequana/rules/freebayes 2022-12-20T17:55:36,386 copying sequana/rules/freebayes/freebayes.rules -> build/lib/sequana/rules/freebayes 2022-12-20T17:55:36,391 creating build/lib/sequana/rules/multiqc2 2022-12-20T17:55:36,393 copying sequana/rules/multiqc2/multiqc2.rules -> build/lib/sequana/rules/multiqc2 2022-12-20T17:55:36,397 creating build/lib/sequana/rules/freebayes_vcf_filter 2022-12-20T17:55:36,400 copying sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/lib/sequana/rules/freebayes_vcf_filter 2022-12-20T17:55:36,406 creating build/lib/sequana/rules/igvtools 2022-12-20T17:55:36,409 copying sequana/rules/igvtools/igvtools.rules -> build/lib/sequana/rules/igvtools 2022-12-20T17:55:36,415 creating build/lib/sequana/rules/fastq_screen_report 2022-12-20T17:55:36,417 copying sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/lib/sequana/rules/fastq_screen_report 2022-12-20T17:55:36,422 creating build/lib/sequana/rules/prokka 2022-12-20T17:55:36,424 copying sequana/rules/prokka/prokka.rules -> build/lib/sequana/rules/prokka 2022-12-20T17:55:36,428 creating build/lib/sequana/rules/miRNA_count_dynamic 2022-12-20T17:55:36,430 copying sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/lib/sequana/rules/miRNA_count_dynamic 2022-12-20T17:55:36,435 creating build/lib/sequana/rules/spades_get_fastq 2022-12-20T17:55:36,437 copying sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/lib/sequana/rules/spades_get_fastq 2022-12-20T17:55:36,442 creating build/lib/sequana/rules/summary_pipeline 2022-12-20T17:55:36,444 copying sequana/rules/summary_pipeline/summary_pipeline.rules -> build/lib/sequana/rules/summary_pipeline 2022-12-20T17:55:36,449 creating build/lib/sequana/rules/dag 2022-12-20T17:55:36,452 copying sequana/rules/dag/dag.rules -> build/lib/sequana/rules/dag 2022-12-20T17:55:36,459 creating build/lib/sequana/rules/indel_realigner 2022-12-20T17:55:36,461 copying sequana/rules/indel_realigner/indel_realigner.rules -> build/lib/sequana/rules/indel_realigner 2022-12-20T17:55:36,465 creating build/lib/sequana/rules/fastp 2022-12-20T17:55:36,467 copying sequana/rules/fastp/fastp.rules -> build/lib/sequana/rules/fastp 2022-12-20T17:55:36,472 creating build/lib/sequana/rules/cutadapt 2022-12-20T17:55:36,474 copying sequana/rules/cutadapt/cutadapt.rules -> build/lib/sequana/rules/cutadapt 2022-12-20T17:55:36,479 creating build/lib/sequana/rules/fastq_sampling 2022-12-20T17:55:36,481 copying sequana/rules/fastq_sampling/fastq_sampling.rules -> build/lib/sequana/rules/fastq_sampling 2022-12-20T17:55:36,485 creating build/lib/sequana/rules/revcomp_rule 2022-12-20T17:55:36,487 copying sequana/rules/revcomp_rule/revcomp_rule.rules -> build/lib/sequana/rules/revcomp_rule 2022-12-20T17:55:36,492 creating build/lib/sequana/rules/rnaseqc 2022-12-20T17:55:36,494 copying sequana/rules/rnaseqc/rnaseqc.rules -> build/lib/sequana/rules/rnaseqc 2022-12-20T17:55:36,498 creating build/lib/sequana/rules/pacbio_quality 2022-12-20T17:55:36,500 copying sequana/rules/pacbio_quality/pacbio_quality.rules -> build/lib/sequana/rules/pacbio_quality 2022-12-20T17:55:36,505 creating build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-12-20T17:55:36,506 copying sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/lib/sequana/rules/joint_freebayes_vcf_filter 2022-12-20T17:55:36,510 creating build/lib/sequana/rules/samtools_sort 2022-12-20T17:55:36,511 copying sequana/rules/samtools_sort/samtools_sort.rules -> build/lib/sequana/rules/samtools_sort 2022-12-20T17:55:36,515 creating build/lib/sequana/rules/bamCoverage 2022-12-20T17:55:36,517 copying sequana/rules/bamCoverage/bamCoverage.rules -> build/lib/sequana/rules/bamCoverage 2022-12-20T17:55:36,520 creating build/lib/sequana/rules/extract_fasta_from_bed 2022-12-20T17:55:36,522 copying sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/lib/sequana/rules/extract_fasta_from_bed 2022-12-20T17:55:36,525 creating build/lib/sequana/rules/tophat_mapping 2022-12-20T17:55:36,527 copying sequana/rules/tophat_mapping/tophat_mapping.rules -> build/lib/sequana/rules/tophat_mapping 2022-12-20T17:55:36,531 creating build/lib/sequana/rules/fastq_screen 2022-12-20T17:55:36,532 copying sequana/rules/fastq_screen/fastq_screen.rules -> build/lib/sequana/rules/fastq_screen 2022-12-20T17:55:36,536 creating build/lib/sequana/rules/bed_to_gff 2022-12-20T17:55:36,537 copying sequana/rules/bed_to_gff/bed_to_gff.rules -> build/lib/sequana/rules/bed_to_gff 2022-12-20T17:55:36,541 creating build/lib/sequana/rules/freebayes_bcf_filter 2022-12-20T17:55:36,542 copying sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/lib/sequana/rules/freebayes_bcf_filter 2022-12-20T17:55:36,546 creating build/lib/sequana/rules/bam_quality_filter 2022-12-20T17:55:36,547 copying sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/lib/sequana/rules/bam_quality_filter 2022-12-20T17:55:36,551 creating build/lib/sequana/rules/fastqc 2022-12-20T17:55:36,552 copying sequana/rules/fastqc/fastqc.rules -> build/lib/sequana/rules/fastqc 2022-12-20T17:55:36,557 creating build/lib/sequana/rules/spp 2022-12-20T17:55:36,558 copying sequana/rules/spp/spp.rules -> build/lib/sequana/rules/spp 2022-12-20T17:55:36,562 creating build/lib/sequana/rules/DupRadar 2022-12-20T17:55:36,563 copying sequana/rules/DupRadar/DupRadar.rules -> build/lib/sequana/rules/DupRadar 2022-12-20T17:55:36,567 creating build/lib/sequana/rules/multiqc 2022-12-20T17:55:36,568 copying sequana/rules/multiqc/multiqc.rules -> build/lib/sequana/rules/multiqc 2022-12-20T17:55:36,572 creating build/lib/sequana/rules/samtools_depth 2022-12-20T17:55:36,573 copying sequana/rules/samtools_depth/samtools_depth.rules -> build/lib/sequana/rules/samtools_depth 2022-12-20T17:55:36,577 creating build/lib/sequana/rules/copy_multiple_files 2022-12-20T17:55:36,578 copying sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/lib/sequana/rules/copy_multiple_files 2022-12-20T17:55:36,582 creating build/lib/sequana/rules/bwa_bam_to_fastq 2022-12-20T17:55:36,583 copying sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/lib/sequana/rules/bwa_bam_to_fastq 2022-12-20T17:55:36,587 creating build/lib/sequana/rules/spikes_counting 2022-12-20T17:55:36,589 copying sequana/rules/spikes_counting/spikes_counting.rules -> build/lib/sequana/rules/spikes_counting 2022-12-20T17:55:36,593 creating build/lib/sequana/rules/salmon_mapping 2022-12-20T17:55:36,594 copying sequana/rules/salmon_mapping/salmon_mapping.rules -> build/lib/sequana/rules/salmon_mapping 2022-12-20T17:55:36,598 creating build/lib/sequana/rules/format_contigs 2022-12-20T17:55:36,600 copying sequana/rules/format_contigs/format_contigs.rules -> build/lib/sequana/rules/format_contigs 2022-12-20T17:55:36,603 creating build/lib/sequana/rules/deeptools/multiBamSummary 2022-12-20T17:55:36,605 copying sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/lib/sequana/rules/deeptools/multiBamSummary 2022-12-20T17:55:36,609 creating build/lib/sequana/rules/deeptools/plotCoverage 2022-12-20T17:55:36,610 copying sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/lib/sequana/rules/deeptools/plotCoverage 2022-12-20T17:55:36,615 creating build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-12-20T17:55:36,616 copying sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/lib/sequana/rules/deeptools/BamPEFragmentSize 2022-12-20T17:55:36,620 creating build/lib/sequana/rules/deeptools/plotCorrelation 2022-12-20T17:55:36,622 copying sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/lib/sequana/rules/deeptools/plotCorrelation 2022-12-20T17:55:36,626 creating build/lib/sequana/rules/kraken 2022-12-20T17:55:36,626 creating build/lib/sequana/rules/kraken/2.0 2022-12-20T17:55:36,628 copying sequana/rules/kraken/2.0/kraken.rules -> build/lib/sequana/rules/kraken/2.0 2022-12-20T17:55:36,632 creating build/lib/sequana/rules/kraken/1.1 2022-12-20T17:55:36,634 copying sequana/rules/kraken/1.1/kraken.rules -> build/lib/sequana/rules/kraken/1.1 2022-12-20T17:55:36,639 creating build/lib/sequana/rules/kraken/1.0 2022-12-20T17:55:36,640 copying sequana/rules/kraken/1.0/kraken.rules -> build/lib/sequana/rules/kraken/1.0 2022-12-20T17:55:36,644 creating build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-12-20T17:55:36,646 copying sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/lib/sequana/rules/codecs/dsrc_to_bz2 2022-12-20T17:55:36,650 creating build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-12-20T17:55:36,651 copying sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/lib/sequana/rules/codecs/dsrc_to_fastq 2022-12-20T17:55:36,655 creating build/lib/sequana/rules/codecs/fastq_to_bz2 2022-12-20T17:55:36,657 copying sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/lib/sequana/rules/codecs/fastq_to_bz2 2022-12-20T17:55:36,660 creating build/lib/sequana/rules/codecs/fastq_to_gz 2022-12-20T17:55:36,662 copying sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/lib/sequana/rules/codecs/fastq_to_gz 2022-12-20T17:55:36,666 creating build/lib/sequana/rules/codecs/bz2_to_fastq 2022-12-20T17:55:36,667 copying sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/lib/sequana/rules/codecs/bz2_to_fastq 2022-12-20T17:55:36,671 creating build/lib/sequana/rules/codecs/vcf_to_bcf 2022-12-20T17:55:36,673 copying sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/lib/sequana/rules/codecs/vcf_to_bcf 2022-12-20T17:55:36,677 creating build/lib/sequana/rules/codecs/gz_to_dsrc 2022-12-20T17:55:36,678 copying sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/lib/sequana/rules/codecs/gz_to_dsrc 2022-12-20T17:55:36,682 creating build/lib/sequana/rules/codecs/gz_to_fastq 2022-12-20T17:55:36,684 copying sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/lib/sequana/rules/codecs/gz_to_fastq 2022-12-20T17:55:36,688 creating build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-12-20T17:55:36,689 copying sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/lib/sequana/rules/codecs/bz2_to_dsrc 2022-12-20T17:55:36,693 creating build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-12-20T17:55:36,694 copying sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/lib/sequana/rules/codecs/fastq_to_dsrc 2022-12-20T17:55:36,698 creating build/lib/sequana/rules/idr/metrics_peaks 2022-12-20T17:55:36,700 copying sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/lib/sequana/rules/idr/metrics_peaks 2022-12-20T17:55:36,704 creating build/lib/sequana/rules/idr/union_peaks 2022-12-20T17:55:36,705 copying sequana/rules/idr/union_peaks/union_peaks.rules -> build/lib/sequana/rules/idr/union_peaks 2022-12-20T17:55:36,709 creating build/lib/sequana/rules/idr/preIDR_dynamic 2022-12-20T17:55:36,711 copying sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/lib/sequana/rules/idr/preIDR_dynamic 2022-12-20T17:55:36,715 creating build/lib/sequana/rules/idr/compute_idr 2022-12-20T17:55:36,717 copying sequana/rules/idr/compute_idr/compute_idr.rules -> build/lib/sequana/rules/idr/compute_idr 2022-12-20T17:55:36,721 creating build/lib/sequana/rules/idr/select_peaks 2022-12-20T17:55:36,723 copying sequana/rules/idr/select_peaks/select_peaks.rules -> build/lib/sequana/rules/idr/select_peaks 2022-12-20T17:55:36,727 creating build/lib/sequana/rules/idr/intersectionApproach 2022-12-20T17:55:36,729 copying sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/lib/sequana/rules/idr/intersectionApproach 2022-12-20T17:55:36,732 creating build/lib/sequana/rules/idr/stats_peakCalling 2022-12-20T17:55:36,734 copying sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/lib/sequana/rules/idr/stats_peakCalling 2022-12-20T17:55:36,738 creating build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-12-20T17:55:36,740 copying sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-12-20T17:55:36,744 creating build/lib/sequana/rules/picard-tools/mark_duplicates 2022-12-20T17:55:36,745 copying sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/lib/sequana/rules/picard-tools/mark_duplicates 2022-12-20T17:55:36,749 creating build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-12-20T17:55:36,751 copying sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/lib/sequana/rules/picard-tools/create_sequence_dictionary 2022-12-20T17:55:36,755 creating build/lib/sequana/rules/picard-tools/add_read_group 2022-12-20T17:55:36,756 copying sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/lib/sequana/rules/picard-tools/add_read_group 2022-12-20T17:55:36,760 creating build/lib/sequana/rules/picard-tools/reorderSam 2022-12-20T17:55:36,762 copying sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/lib/sequana/rules/picard-tools/reorderSam 2022-12-20T17:55:36,766 creating build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-12-20T17:55:36,767 copying sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/lib/sequana/rules/SnpEff/snpeff_create_database 2022-12-20T17:55:36,771 creating build/lib/sequana/rules/multiqc/2.0 2022-12-20T17:55:36,773 copying sequana/rules/multiqc/2.0/multiqc.rules -> build/lib/sequana/rules/multiqc/2.0 2022-12-20T17:55:36,777 creating build/lib/sequana/rules/sambamba/sambamba_markdup 2022-12-20T17:55:36,778 copying sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/lib/sequana/rules/sambamba/sambamba_markdup 2022-12-20T17:55:36,782 creating build/lib/sequana/rules/sambamba/sambamba_filter 2022-12-20T17:55:36,784 copying sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/lib/sequana/rules/sambamba/sambamba_filter 2022-12-20T17:55:36,788 creating build/lib/sequana/rules/SnpEff/snpeff 2022-12-20T17:55:36,788 creating build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-12-20T17:55:36,790 copying sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.1 2022-12-20T17:55:36,795 creating build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-12-20T17:55:36,797 copying sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/lib/sequana/rules/SnpEff/snpeff/1.0 2022-12-20T17:55:36,801 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-12-20T17:55:36,801 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-12-20T17:55:36,803 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-12-20T17:55:36,807 creating build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-12-20T17:55:36,809 copying sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-12-20T17:55:36,813 copying sequana/multiqc/multiqc_config.yaml -> build/lib/sequana/multiqc 2022-12-20T17:55:36,817 copying sequana/resources/snpeff/snpEff.config -> build/lib/sequana/resources/snpeff 2022-12-20T17:55:36,823 copying sequana/resources/js/canvasjs.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,840 copying sequana/resources/js/jquery-3.1.1.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,849 copying sequana/resources/js/jquery.dataTables.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,858 copying sequana/resources/js/papaparse.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,863 copying sequana/resources/js/jquery-3.2.1.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,872 copying sequana/resources/js/buttons.html5.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,878 copying sequana/resources/js/dataTables.buttons.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,883 copying sequana/resources/js/buttons.print.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,887 copying sequana/resources/js/jquery-2.1.1.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,904 copying sequana/resources/js/jquery-3.5.1.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,912 copying sequana/resources/js/bootstrap.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,919 copying sequana/resources/js/jquery.tocPlugin.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,923 copying sequana/resources/js/jquery.dropdown.min.js -> build/lib/sequana/resources/js 2022-12-20T17:55:36,928 copying sequana/resources/images/no_data.png -> build/lib/sequana/resources/images 2022-12-20T17:55:36,932 copying sequana/resources/images/no_data.jpg -> build/lib/sequana/resources/images 2022-12-20T17:55:36,936 copying sequana/resources/images/Institut_Pasteur.png -> build/lib/sequana/resources/images 2022-12-20T17:55:36,942 copying sequana/resources/templates/standard.html -> build/lib/sequana/resources/templates 2022-12-20T17:55:36,947 copying sequana/resources/templates/joint_calling.html -> build/lib/sequana/resources/templates 2022-12-20T17:55:36,950 copying sequana/resources/templates/base.html -> build/lib/sequana/resources/templates 2022-12-20T17:55:36,955 copying sequana/resources/templates/rnadiff_light_template.R -> build/lib/sequana/resources/templates 2022-12-20T17:55:36,959 copying sequana/resources/testing/README.rst -> build/lib/sequana/resources/testing 2022-12-20T17:55:36,963 copying sequana/resources/testing/adapters_with_duplicates.fa -> build/lib/sequana/resources/testing 2022-12-20T17:55:36,967 copying sequana/resources/testing/test_snpeff_ref.gb -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,003 copying sequana/resources/testing/test_expdesign_rubicon.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,007 copying sequana/resources/testing/test_expdesign_Hm2.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,011 copying sequana/resources/testing/test_expdesign_generic.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,015 copying sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,019 copying sequana/resources/testing/test_dag.ann.dot -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,023 copying sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,027 copying sequana/resources/testing/test_kraken.out.summary -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,031 copying sequana/resources/testing/test_R1_.unmapped.fastq -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,034 copying sequana/resources/testing/test_blast_local.xml -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,039 copying sequana/resources/testing/test_taxon_rtd.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,043 copying sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,046 copying sequana/resources/testing/test_blast_ebi.xml -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,069 copying sequana/resources/testing/test.fasta -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,074 copying sequana/resources/testing/test_coverage.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,095 copying sequana/resources/testing/test_index_mapper.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,100 copying sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/lib/sequana/resources/testing 2022-12-20T17:55:37,104 copying sequana/resources/css/jquery.dataTables.min.css -> build/lib/sequana/resources/css 2022-12-20T17:55:37,109 copying sequana/resources/css/bootstrap.min.css -> build/lib/sequana/resources/css 2022-12-20T17:55:37,119 copying sequana/resources/css/report.css -> build/lib/sequana/resources/css 2022-12-20T17:55:37,124 copying sequana/resources/css/jquery.dropdown.min.css -> build/lib/sequana/resources/css 2022-12-20T17:55:37,128 copying sequana/resources/css/buttons.dataTables.min.css -> build/lib/sequana/resources/css 2022-12-20T17:55:37,132 copying sequana/resources/examples/README.rst -> build/lib/sequana/resources/examples 2022-12-20T17:55:37,137 copying sequana/resources/examples/test.fastq.gz -> build/lib/sequana/resources/examples 2022-12-20T17:55:37,142 copying sequana/resources/examples/test_kraken.out -> build/lib/sequana/resources/examples 2022-12-20T17:55:37,147 copying sequana/resources/data/README.rst -> build/lib/sequana/resources/data 2022-12-20T17:55:37,151 copying sequana/resources/data/measles.fa -> build/lib/sequana/resources/data 2022-12-20T17:55:37,156 copying sequana/resources/data/phiX174.fa -> build/lib/sequana/resources/data 2022-12-20T17:55:37,161 copying sequana/resources/data/measles.fa.bwt -> build/lib/sequana/resources/data 2022-12-20T17:55:37,167 copying sequana/resources/data/kegg.csv -> build/lib/sequana/resources/data 2022-12-20T17:55:37,191 copying sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/lib/sequana/resources/data 2022-12-20T17:55:37,204 copying sequana/resources/data/measles.fa.ann -> build/lib/sequana/resources/data 2022-12-20T17:55:37,208 copying sequana/resources/data/panther.csv -> build/lib/sequana/resources/data 2022-12-20T17:55:37,213 copying sequana/resources/data/virus.bed -> build/lib/sequana/resources/data 2022-12-20T17:55:37,235 copying sequana/resources/data/measles.fa.pac -> build/lib/sequana/resources/data 2022-12-20T17:55:37,239 copying sequana/resources/data/measles.fa.sa -> build/lib/sequana/resources/data 2022-12-20T17:55:37,243 copying sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/lib/sequana/resources/data 2022-12-20T17:55:37,254 copying sequana/resources/data/measles.fa.amb -> build/lib/sequana/resources/data 2022-12-20T17:55:37,380 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-20T17:55:37,381 setuptools.SetuptoolsDeprecationWarning, 2022-12-20T17:55:37,445 installing to build/bdist.linux-armv7l/wheel 2022-12-20T17:55:37,446 running install 2022-12-20T17:55:37,509 running install_lib 2022-12-20T17:55:37,577 creating build/bdist.linux-armv7l 2022-12-20T17:55:37,577 creating build/bdist.linux-armv7l/wheel 2022-12-20T17:55:37,583 creating build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,584 copying build/lib/sequana/frip.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,588 copying build/lib/sequana/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,594 copying build/lib/sequana/phantom.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,599 copying build/lib/sequana/jsontool.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,603 copying build/lib/sequana/fasta_gff_correction.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,609 copying build/lib/sequana/misc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,612 copying build/lib/sequana/__init__.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,617 creating build/bdist.linux-armv7l/wheel/sequana/kraken 2022-12-20T17:55:37,618 copying build/lib/sequana/kraken/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-12-20T17:55:37,621 copying build/lib/sequana/kraken/analysis.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-12-20T17:55:37,628 copying build/lib/sequana/kraken/multikraken.py -> build/bdist.linux-armv7l/wheel/sequana/kraken 2022-12-20T17:55:37,632 copying build/lib/sequana/trf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,636 copying build/lib/sequana/snpeff.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,641 copying build/lib/sequana/text.krona.html -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,805 copying build/lib/sequana/sniffer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,809 copying build/lib/sequana/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,812 copying build/lib/sequana/gtf.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,816 copying build/lib/sequana/cigar.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,820 copying build/lib/sequana/kmer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,823 copying build/lib/sequana/gff3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,828 copying build/lib/sequana/canu_scanner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,833 copying build/lib/sequana/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,837 copying build/lib/sequana/homer.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,840 copying build/lib/sequana/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,845 copying build/lib/sequana/bedtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,852 copying build/lib/sequana/freebayes_bcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:37,857 creating build/bdist.linux-armv7l/wheel/sequana/resources 2022-12-20T17:55:37,859 copying build/lib/sequana/resources/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources 2022-12-20T17:55:37,862 creating build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-12-20T17:55:37,864 copying build/lib/sequana/resources/snpeff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-12-20T17:55:37,867 copying build/lib/sequana/resources/snpeff/snpEff.config -> build/bdist.linux-armv7l/wheel/sequana/resources/snpeff 2022-12-20T17:55:37,873 creating build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-12-20T17:55:37,874 copying build/lib/sequana/resources/canvas/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-12-20T17:55:37,877 copying build/lib/sequana/resources/canvas/bar.py -> build/bdist.linux-armv7l/wheel/sequana/resources/canvas 2022-12-20T17:55:37,882 creating build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,883 copying build/lib/sequana/resources/js/canvasjs.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,900 copying build/lib/sequana/resources/js/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,903 copying build/lib/sequana/resources/js/jquery-3.1.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,910 copying build/lib/sequana/resources/js/jquery.dataTables.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,919 copying build/lib/sequana/resources/js/papaparse.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,923 copying build/lib/sequana/resources/js/jquery-3.2.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,932 copying build/lib/sequana/resources/js/buttons.html5.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,937 copying build/lib/sequana/resources/js/dataTables.buttons.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,941 copying build/lib/sequana/resources/js/buttons.print.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,944 copying build/lib/sequana/resources/js/jquery-2.1.1.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,961 copying build/lib/sequana/resources/js/jquery-3.5.1.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,969 copying build/lib/sequana/resources/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,975 copying build/lib/sequana/resources/js/jquery.tocPlugin.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,978 copying build/lib/sequana/resources/js/jquery.dropdown.min.js -> build/bdist.linux-armv7l/wheel/sequana/resources/js 2022-12-20T17:55:37,982 creating build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-12-20T17:55:37,984 copying build/lib/sequana/resources/images/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-12-20T17:55:37,987 copying build/lib/sequana/resources/images/no_data.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-12-20T17:55:37,990 copying build/lib/sequana/resources/images/no_data.jpg -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-12-20T17:55:37,994 copying build/lib/sequana/resources/images/Institut_Pasteur.png -> build/bdist.linux-armv7l/wheel/sequana/resources/images 2022-12-20T17:55:38,001 creating build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,003 copying build/lib/sequana/resources/templates/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,006 copying build/lib/sequana/resources/templates/standard.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,009 copying build/lib/sequana/resources/templates/rnadiff_light_template.R -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,012 copying build/lib/sequana/resources/templates/joint_calling.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,016 copying build/lib/sequana/resources/templates/base.html -> build/bdist.linux-armv7l/wheel/sequana/resources/templates 2022-12-20T17:55:38,021 creating build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,022 copying build/lib/sequana/resources/testing/test_snpeff_ref.gb -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,063 copying build/lib/sequana/resources/testing/test_expdesign_rubicon.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,066 copying build/lib/sequana/resources/testing/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,069 copying build/lib/sequana/resources/testing/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,072 copying build/lib/sequana/resources/testing/test_expdesign_Hm2.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,075 copying build/lib/sequana/resources/testing/test_expdesign_generic.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,078 copying build/lib/sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,081 copying build/lib/sequana/resources/testing/test_dag.ann.dot -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,085 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,088 copying build/lib/sequana/resources/testing/test_kraken.out.summary -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,091 copying build/lib/sequana/resources/testing/test_R1_.unmapped.fastq -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,093 copying build/lib/sequana/resources/testing/adapters_with_duplicates.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,097 copying build/lib/sequana/resources/testing/test_blast_local.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,101 copying build/lib/sequana/resources/testing/test_taxon_rtd.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,104 copying build/lib/sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,107 copying build/lib/sequana/resources/testing/test_blast_ebi.xml -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,136 copying build/lib/sequana/resources/testing/test.fasta -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,140 copying build/lib/sequana/resources/testing/test_coverage.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,161 copying build/lib/sequana/resources/testing/test_index_mapper.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,164 copying build/lib/sequana/resources/testing/test_samplesheet_wrong_characters.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/testing 2022-12-20T17:55:38,169 creating build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,170 copying build/lib/sequana/resources/css/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,173 copying build/lib/sequana/resources/css/jquery.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,178 copying build/lib/sequana/resources/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,187 copying build/lib/sequana/resources/css/report.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,191 copying build/lib/sequana/resources/css/jquery.dropdown.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,195 copying build/lib/sequana/resources/css/buttons.dataTables.min.css -> build/bdist.linux-armv7l/wheel/sequana/resources/css 2022-12-20T17:55:38,200 creating build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-12-20T17:55:38,201 copying build/lib/sequana/resources/examples/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-12-20T17:55:38,204 copying build/lib/sequana/resources/examples/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-12-20T17:55:38,207 copying build/lib/sequana/resources/examples/test.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-12-20T17:55:38,211 copying build/lib/sequana/resources/examples/test_kraken.out -> build/bdist.linux-armv7l/wheel/sequana/resources/examples 2022-12-20T17:55:38,216 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-12-20T17:55:38,219 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-12-20T17:55:38,220 copying build/lib/sequana/resources/doc/rnadiff_compare/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnadiff_compare 2022-12-20T17:55:38,223 copying build/lib/sequana/resources/doc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc 2022-12-20T17:55:38,227 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-12-20T17:55:38,228 copying build/lib/sequana/resources/doc/rnaseq_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0 2022-12-20T17:55:38,232 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-12-20T17:55:38,234 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-12-20T17:55:38,236 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_2 2022-12-20T17:55:38,239 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1 2022-12-20T17:55:38,242 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-12-20T17:55:38,244 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_0 2022-12-20T17:55:38,248 creating build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-12-20T17:55:38,249 copying build/lib/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/doc/rnaseq_0/sample1/feature_counts_1 2022-12-20T17:55:38,253 creating build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,255 copying build/lib/sequana/resources/data/README.rst -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,258 copying build/lib/sequana/resources/data/measles.fa.bwt -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,262 copying build/lib/sequana/resources/data/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,266 copying build/lib/sequana/resources/data/kegg.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,287 copying build/lib/sequana/resources/data/measles.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,291 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,301 copying build/lib/sequana/resources/data/measles.fa.ann -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,304 copying build/lib/sequana/resources/data/panther.csv -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,308 copying build/lib/sequana/resources/data/virus.bed -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,326 copying build/lib/sequana/resources/data/phiX174.fa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,330 copying build/lib/sequana/resources/data/measles.fa.pac -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,333 copying build/lib/sequana/resources/data/measles.fa.sa -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,336 copying build/lib/sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,347 copying build/lib/sequana/resources/data/measles.fa.amb -> build/bdist.linux-armv7l/wheel/sequana/resources/data 2022-12-20T17:55:38,350 copying build/lib/sequana/kegg.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,353 copying build/lib/sequana/cnv.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,356 copying build/lib/sequana/salmon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,360 copying build/lib/sequana/macs3.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,364 copying build/lib/sequana/assembly.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,369 creating build/bdist.linux-armv7l/wheel/sequana/plots 2022-12-20T17:55:38,371 copying build/lib/sequana/plots/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-12-20T17:55:38,374 copying build/lib/sequana/plots/canvasjs_linegraph.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-12-20T17:55:38,377 copying build/lib/sequana/plots/canvasjs_base.py -> build/bdist.linux-armv7l/wheel/sequana/plots 2022-12-20T17:55:38,382 copying build/lib/sequana/bed.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,385 copying build/lib/sequana/databases.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,390 copying build/lib/sequana/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,394 copying build/lib/sequana/phred.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,398 copying build/lib/sequana/stats.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,401 copying build/lib/sequana/lazy.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,406 creating build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,407 copying build/lib/sequana/viz/anova.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,411 copying build/lib/sequana/viz/volcano.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,415 copying build/lib/sequana/viz/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,418 copying build/lib/sequana/viz/linkage.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,422 copying build/lib/sequana/viz/clusterisation.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,426 copying build/lib/sequana/viz/scatter.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,430 copying build/lib/sequana/viz/hinton.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,433 copying build/lib/sequana/viz/boxplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,436 copying build/lib/sequana/viz/isomap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,439 copying build/lib/sequana/viz/pca.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,443 copying build/lib/sequana/viz/mds.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,446 copying build/lib/sequana/viz/core.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,449 copying build/lib/sequana/viz/venn.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,452 copying build/lib/sequana/viz/imshow.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,456 copying build/lib/sequana/viz/dendogram.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,460 copying build/lib/sequana/viz/hist2d.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,464 copying build/lib/sequana/viz/corrplot.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,469 copying build/lib/sequana/viz/heatmap.py -> build/bdist.linux-armv7l/wheel/sequana/viz 2022-12-20T17:55:38,476 creating build/bdist.linux-armv7l/wheel/sequana/rules 2022-12-20T17:55:38,478 creating build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-12-20T17:55:38,480 copying build/lib/sequana/rules/rulegraph/rulegraph.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rulegraph 2022-12-20T17:55:38,485 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-12-20T17:55:38,486 copying build/lib/sequana/rules/salmon_index/salmon_index.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_index 2022-12-20T17:55:38,491 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-12-20T17:55:38,492 copying build/lib/sequana/rules/freebayes/freebayes.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes 2022-12-20T17:55:38,496 copying build/lib/sequana/rules/README.rst -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-12-20T17:55:38,500 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-12-20T17:55:38,501 copying build/lib/sequana/rules/multiqc2/multiqc2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc2 2022-12-20T17:55:38,506 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-12-20T17:55:38,508 copying build/lib/sequana/rules/deeptools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools 2022-12-20T17:55:38,512 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-12-20T17:55:38,513 copying build/lib/sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/multiBamSummary 2022-12-20T17:55:38,518 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-12-20T17:55:38,519 copying build/lib/sequana/rules/deeptools/plotCoverage/plotCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCoverage 2022-12-20T17:55:38,524 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-12-20T17:55:38,526 copying build/lib/sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/BamPEFragmentSize 2022-12-20T17:55:38,530 creating build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-12-20T17:55:38,531 copying build/lib/sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/deeptools/plotCorrelation 2022-12-20T17:55:38,536 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-12-20T17:55:38,537 copying build/lib/sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_vcf_filter 2022-12-20T17:55:38,542 creating build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-12-20T17:55:38,544 copying build/lib/sequana/rules/igvtools/igvtools.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/igvtools 2022-12-20T17:55:38,548 copying build/lib/sequana/rules/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules 2022-12-20T17:55:38,551 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-12-20T17:55:38,553 copying build/lib/sequana/rules/fastq_screen_report/fastq_screen_report.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen_report 2022-12-20T17:55:38,558 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken 2022-12-20T17:55:38,560 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-12-20T17:55:38,562 copying build/lib/sequana/rules/kraken/2.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/2.0 2022-12-20T17:55:38,567 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-12-20T17:55:38,568 copying build/lib/sequana/rules/kraken/1.1/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.1 2022-12-20T17:55:38,573 creating build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-12-20T17:55:38,575 copying build/lib/sequana/rules/kraken/1.0/kraken.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/kraken/1.0 2022-12-20T17:55:38,579 creating build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-12-20T17:55:38,580 copying build/lib/sequana/rules/prokka/prokka.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/prokka 2022-12-20T17:55:38,585 creating build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-12-20T17:55:38,587 copying build/lib/sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/miRNA_count_dynamic 2022-12-20T17:55:38,591 creating build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-12-20T17:55:38,592 copying build/lib/sequana/rules/spades_get_fastq/spades_get_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spades_get_fastq 2022-12-20T17:55:38,597 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-12-20T17:55:38,599 copying build/lib/sequana/rules/codecs/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs 2022-12-20T17:55:38,602 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-12-20T17:55:38,604 copying build/lib/sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_bz2 2022-12-20T17:55:38,608 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-12-20T17:55:38,610 copying build/lib/sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/dsrc_to_fastq 2022-12-20T17:55:38,614 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-12-20T17:55:38,616 copying build/lib/sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_bz2 2022-12-20T17:55:38,620 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-12-20T17:55:38,622 copying build/lib/sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_gz 2022-12-20T17:55:38,626 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-12-20T17:55:38,628 copying build/lib/sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_fastq 2022-12-20T17:55:38,632 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-12-20T17:55:38,634 copying build/lib/sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/vcf_to_bcf 2022-12-20T17:55:38,638 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-12-20T17:55:38,639 copying build/lib/sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_dsrc 2022-12-20T17:55:38,644 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-12-20T17:55:38,646 copying build/lib/sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/gz_to_fastq 2022-12-20T17:55:38,650 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-12-20T17:55:38,652 copying build/lib/sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/bz2_to_dsrc 2022-12-20T17:55:38,657 creating build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-12-20T17:55:38,658 copying build/lib/sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/codecs/fastq_to_dsrc 2022-12-20T17:55:38,663 creating build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-12-20T17:55:38,665 copying build/lib/sequana/rules/summary_pipeline/summary_pipeline.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/summary_pipeline 2022-12-20T17:55:38,669 creating build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-12-20T17:55:38,671 copying build/lib/sequana/rules/dag/dag.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/dag 2022-12-20T17:55:38,675 creating build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-12-20T17:55:38,677 copying build/lib/sequana/rules/indel_realigner/indel_realigner.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/indel_realigner 2022-12-20T17:55:38,682 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-12-20T17:55:38,684 copying build/lib/sequana/rules/idr/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/idr 2022-12-20T17:55:38,688 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-12-20T17:55:38,689 copying build/lib/sequana/rules/idr/metrics_peaks/metrics_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/metrics_peaks 2022-12-20T17:55:38,694 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-12-20T17:55:38,695 copying build/lib/sequana/rules/idr/union_peaks/union_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/union_peaks 2022-12-20T17:55:38,700 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-12-20T17:55:38,701 copying build/lib/sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/preIDR_dynamic 2022-12-20T17:55:38,707 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-12-20T17:55:38,708 copying build/lib/sequana/rules/idr/compute_idr/compute_idr.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/compute_idr 2022-12-20T17:55:38,713 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-12-20T17:55:38,714 copying build/lib/sequana/rules/idr/select_peaks/select_peaks.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/select_peaks 2022-12-20T17:55:38,719 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-12-20T17:55:38,720 copying build/lib/sequana/rules/idr/intersectionApproach/intersectionApproach.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/intersectionApproach 2022-12-20T17:55:38,725 creating build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-12-20T17:55:38,726 copying build/lib/sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/idr/stats_peakCalling 2022-12-20T17:55:38,731 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-12-20T17:55:38,732 copying build/lib/sequana/rules/fastp/fastp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastp 2022-12-20T17:55:38,737 creating build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-12-20T17:55:38,738 copying build/lib/sequana/rules/cutadapt/cutadapt.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/cutadapt 2022-12-20T17:55:38,744 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-12-20T17:55:38,745 copying build/lib/sequana/rules/fastq_sampling/fastq_sampling.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_sampling 2022-12-20T17:55:38,750 creating build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-12-20T17:55:38,751 copying build/lib/sequana/rules/revcomp_rule/revcomp_rule.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/revcomp_rule 2022-12-20T17:55:38,756 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-12-20T17:55:38,758 copying build/lib/sequana/rules/picard-tools/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools 2022-12-20T17:55:38,762 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-12-20T17:55:38,763 copying build/lib/sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/CollectInsertSizeMetrics 2022-12-20T17:55:38,768 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-12-20T17:55:38,769 copying build/lib/sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/mark_duplicates 2022-12-20T17:55:38,775 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-12-20T17:55:38,776 copying build/lib/sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/create_sequence_dictionary 2022-12-20T17:55:38,780 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-12-20T17:55:38,782 copying build/lib/sequana/rules/picard-tools/add_read_group/add_read_group.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/add_read_group 2022-12-20T17:55:38,786 creating build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-12-20T17:55:38,788 copying build/lib/sequana/rules/picard-tools/reorderSam/reorderSam.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/picard-tools/reorderSam 2022-12-20T17:55:38,793 creating build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-12-20T17:55:38,794 copying build/lib/sequana/rules/rnaseqc/rnaseqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/rnaseqc 2022-12-20T17:55:38,799 creating build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-12-20T17:55:38,801 copying build/lib/sequana/rules/pacbio_quality/pacbio_quality.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/pacbio_quality 2022-12-20T17:55:38,806 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-12-20T17:55:38,807 copying build/lib/sequana/rules/SnpEff/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff 2022-12-20T17:55:38,811 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff 2022-12-20T17:55:38,813 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-12-20T17:55:38,815 copying build/lib/sequana/rules/SnpEff/snpeff/1.1/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.1 2022-12-20T17:55:38,820 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-12-20T17:55:38,821 copying build/lib/sequana/rules/SnpEff/snpeff/1.0/snpeff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff/1.0 2022-12-20T17:55:38,826 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta 2022-12-20T17:55:38,829 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-12-20T17:55:38,830 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1 2022-12-20T17:55:38,836 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-12-20T17:55:38,837 copying build/lib/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0 2022-12-20T17:55:38,842 creating build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-12-20T17:55:38,844 copying build/lib/sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/SnpEff/snpeff_create_database 2022-12-20T17:55:38,848 creating build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-12-20T17:55:38,850 copying build/lib/sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/joint_freebayes_vcf_filter 2022-12-20T17:55:38,854 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-12-20T17:55:38,856 copying build/lib/sequana/rules/samtools_sort/samtools_sort.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_sort 2022-12-20T17:55:38,860 creating build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-12-20T17:55:38,862 copying build/lib/sequana/rules/bamCoverage/bamCoverage.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bamCoverage 2022-12-20T17:55:38,867 creating build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-12-20T17:55:38,868 copying build/lib/sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/extract_fasta_from_bed 2022-12-20T17:55:38,873 creating build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-12-20T17:55:38,875 copying build/lib/sequana/rules/tophat_mapping/tophat_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/tophat_mapping 2022-12-20T17:55:38,879 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-12-20T17:55:38,881 copying build/lib/sequana/rules/fastq_screen/fastq_screen.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastq_screen 2022-12-20T17:55:38,886 creating build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-12-20T17:55:38,887 copying build/lib/sequana/rules/bed_to_gff/bed_to_gff.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bed_to_gff 2022-12-20T17:55:38,892 creating build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-12-20T17:55:38,893 copying build/lib/sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/freebayes_bcf_filter 2022-12-20T17:55:38,898 creating build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-12-20T17:55:38,899 copying build/lib/sequana/rules/bam_quality_filter/bam_quality_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bam_quality_filter 2022-12-20T17:55:38,904 creating build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-12-20T17:55:38,905 copying build/lib/sequana/rules/fastqc/fastqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/fastqc 2022-12-20T17:55:38,910 creating build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-12-20T17:55:38,911 copying build/lib/sequana/rules/spp/spp.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spp 2022-12-20T17:55:38,916 creating build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-12-20T17:55:38,917 copying build/lib/sequana/rules/DupRadar/DupRadar.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/DupRadar 2022-12-20T17:55:38,922 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-12-20T17:55:38,924 creating build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-12-20T17:55:38,926 copying build/lib/sequana/rules/multiqc/2.0/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc/2.0 2022-12-20T17:55:38,930 copying build/lib/sequana/rules/multiqc/multiqc.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/multiqc 2022-12-20T17:55:38,934 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-12-20T17:55:38,937 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-12-20T17:55:38,938 copying build/lib/sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_markdup 2022-12-20T17:55:38,942 copying build/lib/sequana/rules/sambamba/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba 2022-12-20T17:55:38,946 creating build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-12-20T17:55:38,947 copying build/lib/sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/sambamba/sambamba_filter 2022-12-20T17:55:38,952 creating build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-12-20T17:55:38,953 copying build/lib/sequana/rules/samtools_depth/samtools_depth.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/samtools_depth 2022-12-20T17:55:38,958 creating build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-12-20T17:55:38,959 copying build/lib/sequana/rules/copy_multiple_files/copy_multiple_files.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/copy_multiple_files 2022-12-20T17:55:38,964 creating build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-12-20T17:55:38,965 copying build/lib/sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/bwa_bam_to_fastq 2022-12-20T17:55:38,969 creating build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-12-20T17:55:38,971 copying build/lib/sequana/rules/spikes_counting/spikes_counting.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/spikes_counting 2022-12-20T17:55:38,975 creating build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-12-20T17:55:38,977 copying build/lib/sequana/rules/Pacbio/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/rules/Pacbio 2022-12-20T17:55:38,981 creating build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-12-20T17:55:38,982 copying build/lib/sequana/rules/salmon_mapping/salmon_mapping.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/salmon_mapping 2022-12-20T17:55:38,987 creating build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-12-20T17:55:38,988 copying build/lib/sequana/rules/format_contigs/format_contigs.rules -> build/bdist.linux-armv7l/wheel/sequana/rules/format_contigs 2022-12-20T17:55:38,992 copying build/lib/sequana/compare.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:38,997 copying build/lib/sequana/vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,002 copying build/lib/sequana/featurecounts.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,007 copying build/lib/sequana/fasta.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,011 copying build/lib/sequana/pacbio.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,017 copying build/lib/sequana/vcftools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,021 copying build/lib/sequana/vst.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,027 creating build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,028 copying build/lib/sequana/utils/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,032 copying build/lib/sequana/utils/df2html.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,036 copying build/lib/sequana/utils/pandas.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,040 copying build/lib/sequana/utils/config.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,044 copying build/lib/sequana/utils/datatables_js.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,049 copying build/lib/sequana/utils/tree.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,053 copying build/lib/sequana/utils/singleton.py -> build/bdist.linux-armv7l/wheel/sequana/utils 2022-12-20T17:55:39,057 copying build/lib/sequana/contigs.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,062 copying build/lib/sequana/krona.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,066 copying build/lib/sequana/mh.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,070 copying build/lib/sequana/idr.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,075 copying build/lib/sequana/cpg_islands.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,079 copying build/lib/sequana/coverage.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,084 copying build/lib/sequana/codon.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,089 creating build/bdist.linux-armv7l/wheel/sequana/scripts 2022-12-20T17:55:39,091 copying build/lib/sequana/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-12-20T17:55:39,095 copying build/lib/sequana/scripts/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-12-20T17:55:39,099 copying build/lib/sequana/scripts/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-12-20T17:55:39,105 copying build/lib/sequana/scripts/substractor.py -> build/bdist.linux-armv7l/wheel/sequana/scripts 2022-12-20T17:55:39,112 creating build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,115 copying build/lib/sequana/scripts/main/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,121 copying build/lib/sequana/scripts/main/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,125 copying build/lib/sequana/scripts/main/samplesheet.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,128 copying build/lib/sequana/scripts/main/ribodesigner.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,132 copying build/lib/sequana/scripts/main/taxonomy.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,136 copying build/lib/sequana/scripts/main/gff_to_light_gff.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,140 copying build/lib/sequana/scripts/main/salmon.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,146 copying build/lib/sequana/scripts/main/gtf_fixer.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,152 copying build/lib/sequana/scripts/main/main.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,156 copying build/lib/sequana/scripts/main/feature_count.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,160 copying build/lib/sequana/scripts/main/fasta.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,164 copying build/lib/sequana/scripts/main/utils.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,167 copying build/lib/sequana/scripts/main/biomart.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,171 copying build/lib/sequana/scripts/main/gff_to_gtf.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,175 copying build/lib/sequana/scripts/main/mapping.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,179 copying build/lib/sequana/scripts/main/summary.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,183 copying build/lib/sequana/scripts/main/enrichment_panther.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,188 copying build/lib/sequana/scripts/main/fastq.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,192 copying build/lib/sequana/scripts/main/lane_merging.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,196 copying build/lib/sequana/scripts/main/enrichment_uniprot.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,201 copying build/lib/sequana/scripts/main/rnaseq_compare.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,205 copying build/lib/sequana/scripts/main/enrichment_kegg.py -> build/bdist.linux-armv7l/wheel/sequana/scripts/main 2022-12-20T17:55:39,210 copying build/lib/sequana/bamtools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,218 copying build/lib/sequana/summary.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,223 copying build/lib/sequana/genbank.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,227 copying build/lib/sequana/fastq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,234 copying build/lib/sequana/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,241 creating build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,243 copying build/lib/sequana/enrichment/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,247 copying build/lib/sequana/enrichment/plot_go_terms.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,253 copying build/lib/sequana/enrichment/kegg.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,259 copying build/lib/sequana/enrichment/gsea.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,262 copying build/lib/sequana/enrichment/panther.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,268 copying build/lib/sequana/enrichment/ontology.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,271 copying build/lib/sequana/enrichment/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,275 copying build/lib/sequana/enrichment/quickgo.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,279 copying build/lib/sequana/enrichment/mart.py -> build/bdist.linux-armv7l/wheel/sequana/enrichment 2022-12-20T17:55:39,284 creating build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,286 copying build/lib/sequana/multiqc/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,290 copying build/lib/sequana/multiqc/laa.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,293 copying build/lib/sequana/multiqc/isoseq_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,297 copying build/lib/sequana/multiqc/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,301 copying build/lib/sequana/multiqc/pacbio_amplicon.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,304 copying build/lib/sequana/multiqc/config.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,307 copying build/lib/sequana/multiqc/multiqc_config.yaml -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,311 copying build/lib/sequana/multiqc/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,315 copying build/lib/sequana/multiqc/isoseq.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,319 copying build/lib/sequana/multiqc/plots.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,322 copying build/lib/sequana/multiqc/pacbio_qc.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,327 copying build/lib/sequana/multiqc/bamtools_stats.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,331 copying build/lib/sequana/multiqc/quality_control.py -> build/bdist.linux-armv7l/wheel/sequana/multiqc 2022-12-20T17:55:39,335 copying build/lib/sequana/freebayes_vcf_filter.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,340 creating build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,342 copying build/lib/sequana/modules_report/rnadiff.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,347 copying build/lib/sequana/modules_report/cutadapt.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,353 copying build/lib/sequana/modules_report/base_module.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,357 copying build/lib/sequana/modules_report/phix.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,361 copying build/lib/sequana/modules_report/__init__.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,365 copying build/lib/sequana/modules_report/trf.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,369 copying build/lib/sequana/modules_report/pacbio_input_bam.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,373 copying build/lib/sequana/modules_report/fastqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,377 copying build/lib/sequana/modules_report/kraken.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,383 copying build/lib/sequana/modules_report/panther_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,388 copying build/lib/sequana/modules_report/multi_summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,393 copying build/lib/sequana/modules_report/fastq_stats.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,398 copying build/lib/sequana/modules_report/kegg_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,402 copying build/lib/sequana/modules_report/coverage.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,409 copying build/lib/sequana/modules_report/joint_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,412 copying build/lib/sequana/modules_report/bamqc.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,416 copying build/lib/sequana/modules_report/summary.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,420 copying build/lib/sequana/modules_report/uniprot_enrichment.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,424 copying build/lib/sequana/modules_report/variant_calling.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,428 copying build/lib/sequana/modules_report/quast.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,431 copying build/lib/sequana/modules_report/bwa_bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/sequana/modules_report 2022-12-20T17:55:39,434 copying build/lib/sequana/lazyimports.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,438 copying build/lib/sequana/mixture.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,442 copying build/lib/sequana/itol.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,447 copying build/lib/sequana/protein.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,450 copying build/lib/sequana/errors.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,453 copying build/lib/sequana/mgi.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,457 copying build/lib/sequana/demultiplex.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,461 copying build/lib/sequana/running_median.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,466 copying build/lib/sequana/criteria.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,470 copying build/lib/sequana/iuapc.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,475 copying build/lib/sequana/sequence.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,694 copying build/lib/sequana/iem.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,699 copying build/lib/sequana/tools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,704 copying build/lib/sequana/find_motif.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,708 copying build/lib/sequana/datatools.py -> build/bdist.linux-armv7l/wheel/sequana 2022-12-20T17:55:39,712 running install_egg_info 2022-12-20T17:55:39,872 running egg_info 2022-12-20T17:55:39,935 writing sequana.egg-info/PKG-INFO 2022-12-20T17:55:39,940 writing dependency_links to sequana.egg-info/dependency_links.txt 2022-12-20T17:55:39,946 writing entry points to sequana.egg-info/entry_points.txt 2022-12-20T17:55:39,950 writing requirements to sequana.egg-info/requires.txt 2022-12-20T17:55:39,953 writing top-level names to sequana.egg-info/top_level.txt 2022-12-20T17:55:40,404 reading manifest file 'sequana.egg-info/SOURCES.txt' 2022-12-20T17:55:40,464 reading manifest template 'MANIFEST.in' 2022-12-20T17:55:40,471 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-20T17:55:40,477 warning: no previously-included files matching '*pyc' found under directory '*' 2022-12-20T17:55:41,672 warning: no files found matching 'test/requirements*txt' 2022-12-20T17:55:41,678 warning: no previously-included files matching '*' found under directory 'sequana/methylation' 2022-12-20T17:55:41,681 warning: no previously-included files matching '*' found under directory 'test' 2022-12-20T17:55:41,684 warning: no previously-included files matching '*' found under directory 'doc' 2022-12-20T17:55:41,687 warning: no previously-included files found matching 'sequana/rm2.py' 2022-12-20T17:55:41,688 adding license file 'LICENSE' 2022-12-20T17:55:41,751 writing manifest file 'sequana.egg-info/SOURCES.txt' 2022-12-20T17:55:41,756 Copying sequana.egg-info to build/bdist.linux-armv7l/wheel/sequana-0.14.6-py3.7.egg-info 2022-12-20T17:55:41,788 running install_scripts 2022-12-20T17:55:42,090 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-12-20T17:55:42,100 creating build/bdist.linux-armv7l/wheel/sequana-0.14.6.dist-info/WHEEL 2022-12-20T17:55:42,105 creating '/tmp/pip-wheel-v7gc45tp/sequana-0.14.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-20T17:55:42,110 adding 'sequana/__init__.py' 2022-12-20T17:55:42,114 adding 'sequana/assembly.py' 2022-12-20T17:55:42,132 adding 'sequana/bamtools.py' 2022-12-20T17:55:42,137 adding 'sequana/bed.py' 2022-12-20T17:55:42,159 adding 'sequana/bedtools.py' 2022-12-20T17:55:42,164 adding 'sequana/canu_scanner.py' 2022-12-20T17:55:42,168 adding 'sequana/cigar.py' 2022-12-20T17:55:42,171 adding 'sequana/cnv.py' 2022-12-20T17:55:42,174 adding 'sequana/codon.py' 2022-12-20T17:55:42,179 adding 'sequana/compare.py' 2022-12-20T17:55:42,183 adding 'sequana/contigs.py' 2022-12-20T17:55:42,187 adding 'sequana/coverage.py' 2022-12-20T17:55:42,189 adding 'sequana/cpg_islands.py' 2022-12-20T17:55:42,192 adding 'sequana/criteria.py' 2022-12-20T17:55:42,198 adding 'sequana/databases.py' 2022-12-20T17:55:42,201 adding 'sequana/datatools.py' 2022-12-20T17:55:42,205 adding 'sequana/demultiplex.py' 2022-12-20T17:55:42,207 adding 'sequana/errors.py' 2022-12-20T17:55:42,211 adding 'sequana/fasta.py' 2022-12-20T17:55:42,216 adding 'sequana/fasta_gff_correction.py' 2022-12-20T17:55:42,228 adding 'sequana/fastq.py' 2022-12-20T17:55:42,232 adding 'sequana/fastqc.py' 2022-12-20T17:55:42,238 adding 'sequana/featurecounts.py' 2022-12-20T17:55:42,241 adding 'sequana/find_motif.py' 2022-12-20T17:55:42,245 adding 'sequana/freebayes_bcf_filter.py' 2022-12-20T17:55:42,250 adding 'sequana/freebayes_vcf_filter.py' 2022-12-20T17:55:42,252 adding 'sequana/frip.py' 2022-12-20T17:55:42,256 adding 'sequana/genbank.py' 2022-12-20T17:55:42,262 adding 'sequana/gff3.py' 2022-12-20T17:55:42,265 adding 'sequana/gtf.py' 2022-12-20T17:55:42,268 adding 'sequana/homer.py' 2022-12-20T17:55:42,271 adding 'sequana/idr.py' 2022-12-20T17:55:42,275 adding 'sequana/iem.py' 2022-12-20T17:55:42,282 adding 'sequana/isoseq.py' 2022-12-20T17:55:42,286 adding 'sequana/itol.py' 2022-12-20T17:55:42,289 adding 'sequana/iuapc.py' 2022-12-20T17:55:42,291 adding 'sequana/jsontool.py' 2022-12-20T17:55:42,294 adding 'sequana/kegg.py' 2022-12-20T17:55:42,296 adding 'sequana/kmer.py' 2022-12-20T17:55:42,299 adding 'sequana/krona.py' 2022-12-20T17:55:42,301 adding 'sequana/lazy.py' 2022-12-20T17:55:42,304 adding 'sequana/lazyimports.py' 2022-12-20T17:55:42,308 adding 'sequana/macs3.py' 2022-12-20T17:55:42,311 adding 'sequana/mgi.py' 2022-12-20T17:55:42,314 adding 'sequana/mh.py' 2022-12-20T17:55:42,317 adding 'sequana/misc.py' 2022-12-20T17:55:42,321 adding 'sequana/mixture.py' 2022-12-20T17:55:42,332 adding 'sequana/pacbio.py' 2022-12-20T17:55:42,337 adding 'sequana/pacbio_amplicon.py' 2022-12-20T17:55:42,343 adding 'sequana/phantom.py' 2022-12-20T17:55:42,347 adding 'sequana/phred.py' 2022-12-20T17:55:42,351 adding 'sequana/protein.py' 2022-12-20T17:55:42,357 adding 'sequana/ribodesigner.py' 2022-12-20T17:55:42,371 adding 'sequana/rnadiff.py' 2022-12-20T17:55:42,375 adding 'sequana/running_median.py' 2022-12-20T17:55:42,379 adding 'sequana/salmon.py' 2022-12-20T17:55:42,389 adding 'sequana/sequence.py' 2022-12-20T17:55:42,393 adding 'sequana/sniffer.py' 2022-12-20T17:55:42,399 adding 'sequana/snpeff.py' 2022-12-20T17:55:42,402 adding 'sequana/stats.py' 2022-12-20T17:55:42,405 adding 'sequana/summary.py' 2022-12-20T17:55:42,411 adding 'sequana/taxonomy.py' 2022-12-20T17:55:42,781 adding 'sequana/text.krona.html' 2022-12-20T17:55:42,851 adding 'sequana/tools.py' 2022-12-20T17:55:42,855 adding 'sequana/trf.py' 2022-12-20T17:55:42,860 adding 'sequana/vcf_filter.py' 2022-12-20T17:55:42,863 adding 'sequana/vcftools.py' 2022-12-20T17:55:42,866 adding 'sequana/vst.py' 2022-12-20T17:55:42,869 adding 'sequana/enrichment/__init__.py' 2022-12-20T17:55:42,871 adding 'sequana/enrichment/gsea.py' 2022-12-20T17:55:42,878 adding 'sequana/enrichment/kegg.py' 2022-12-20T17:55:42,881 adding 'sequana/enrichment/mart.py' 2022-12-20T17:55:42,884 adding 'sequana/enrichment/ontology.py' 2022-12-20T17:55:42,889 adding 'sequana/enrichment/panther.py' 2022-12-20T17:55:42,894 adding 'sequana/enrichment/plot_go_terms.py' 2022-12-20T17:55:42,898 adding 'sequana/enrichment/quickgo.py' 2022-12-20T17:55:42,902 adding 'sequana/enrichment/uniprot_enrichment.py' 2022-12-20T17:55:42,906 adding 'sequana/kraken/__init__.py' 2022-12-20T17:55:42,920 adding 'sequana/kraken/analysis.py' 2022-12-20T17:55:42,925 adding 'sequana/kraken/multikraken.py' 2022-12-20T17:55:42,928 adding 'sequana/modules_report/__init__.py' 2022-12-20T17:55:42,930 adding 'sequana/modules_report/bamqc.py' 2022-12-20T17:55:42,934 adding 'sequana/modules_report/base_module.py' 2022-12-20T17:55:42,938 adding 'sequana/modules_report/bwa_bam_to_fastq.py' 2022-12-20T17:55:42,945 adding 'sequana/modules_report/coverage.py' 2022-12-20T17:55:42,951 adding 'sequana/modules_report/cutadapt.py' 2022-12-20T17:55:42,955 adding 'sequana/modules_report/fastq_stats.py' 2022-12-20T17:55:42,958 adding 'sequana/modules_report/fastqc.py' 2022-12-20T17:55:42,960 adding 'sequana/modules_report/joint_calling.py' 2022-12-20T17:55:42,963 adding 'sequana/modules_report/kegg_enrichment.py' 2022-12-20T17:55:42,967 adding 'sequana/modules_report/kraken.py' 2022-12-20T17:55:42,972 adding 'sequana/modules_report/multi_summary.py' 2022-12-20T17:55:42,975 adding 'sequana/modules_report/pacbio_input_bam.py' 2022-12-20T17:55:42,979 adding 'sequana/modules_report/panther_enrichment.py' 2022-12-20T17:55:42,983 adding 'sequana/modules_report/phix.py' 2022-12-20T17:55:42,985 adding 'sequana/modules_report/quast.py' 2022-12-20T17:55:42,991 adding 'sequana/modules_report/rnadiff.py' 2022-12-20T17:55:42,995 adding 'sequana/modules_report/summary.py' 2022-12-20T17:55:42,998 adding 'sequana/modules_report/trf.py' 2022-12-20T17:55:43,001 adding 'sequana/modules_report/uniprot_enrichment.py' 2022-12-20T17:55:43,005 adding 'sequana/modules_report/variant_calling.py' 2022-12-20T17:55:43,008 adding 'sequana/multiqc/__init__.py' 2022-12-20T17:55:43,011 adding 'sequana/multiqc/bamtools_stats.py' 2022-12-20T17:55:43,014 adding 'sequana/multiqc/config.py' 2022-12-20T17:55:43,018 adding 'sequana/multiqc/coverage.py' 2022-12-20T17:55:43,021 adding 'sequana/multiqc/isoseq.py' 2022-12-20T17:55:43,025 adding 'sequana/multiqc/isoseq_qc.py' 2022-12-20T17:55:43,028 adding 'sequana/multiqc/kraken.py' 2022-12-20T17:55:43,031 adding 'sequana/multiqc/laa.py' 2022-12-20T17:55:43,034 adding 'sequana/multiqc/multiqc_config.yaml' 2022-12-20T17:55:43,037 adding 'sequana/multiqc/pacbio_amplicon.py' 2022-12-20T17:55:43,041 adding 'sequana/multiqc/pacbio_qc.py' 2022-12-20T17:55:43,043 adding 'sequana/multiqc/plots.py' 2022-12-20T17:55:43,046 adding 'sequana/multiqc/quality_control.py' 2022-12-20T17:55:43,049 adding 'sequana/plots/__init__.py' 2022-12-20T17:55:43,052 adding 'sequana/plots/canvasjs_base.py' 2022-12-20T17:55:43,056 adding 'sequana/plots/canvasjs_linegraph.py' 2022-12-20T17:55:43,059 adding 'sequana/resources/__init__.py' 2022-12-20T17:55:43,061 adding 'sequana/resources/canvas/__init__.py' 2022-12-20T17:55:43,064 adding 'sequana/resources/canvas/bar.py' 2022-12-20T17:55:43,068 adding 'sequana/resources/css/__init__.py' 2022-12-20T17:55:43,090 adding 'sequana/resources/css/bootstrap.min.css' 2022-12-20T17:55:43,096 adding 'sequana/resources/css/buttons.dataTables.min.css' 2022-12-20T17:55:43,099 adding 'sequana/resources/css/jquery.dataTables.min.css' 2022-12-20T17:55:43,102 adding 'sequana/resources/css/jquery.dropdown.min.css' 2022-12-20T17:55:43,105 adding 'sequana/resources/css/report.css' 2022-12-20T17:55:43,136 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R1_001.fastq.gz' 2022-12-20T17:55:43,170 adding 'sequana/resources/data/Hm2_GTGAAA_L005_R2_001.fastq.gz' 2022-12-20T17:55:43,174 adding 'sequana/resources/data/README.rst' 2022-12-20T17:55:43,177 adding 'sequana/resources/data/__init__.py' 2022-12-20T17:55:43,320 adding 'sequana/resources/data/kegg.csv' 2022-12-20T17:55:43,346 adding 'sequana/resources/data/measles.fa' 2022-12-20T17:55:43,349 adding 'sequana/resources/data/measles.fa.amb' 2022-12-20T17:55:43,351 adding 'sequana/resources/data/measles.fa.ann' 2022-12-20T17:55:43,357 adding 'sequana/resources/data/measles.fa.bwt' 2022-12-20T17:55:43,360 adding 'sequana/resources/data/measles.fa.pac' 2022-12-20T17:55:43,366 adding 'sequana/resources/data/measles.fa.sa' 2022-12-20T17:55:43,369 adding 'sequana/resources/data/panther.csv' 2022-12-20T17:55:43,375 adding 'sequana/resources/data/phiX174.fa' 2022-12-20T17:55:43,521 adding 'sequana/resources/data/virus.bed' 2022-12-20T17:55:43,530 adding 'sequana/resources/doc/__init__.py' 2022-12-20T17:55:43,533 adding 'sequana/resources/doc/rnadiff_compare/__init__.py' 2022-12-20T17:55:43,536 adding 'sequana/resources/doc/rnaseq_0/__init__.py' 2022-12-20T17:55:43,538 adding 'sequana/resources/doc/rnaseq_0/sample1/__init__.py' 2022-12-20T17:55:43,541 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_0/__init__.py' 2022-12-20T17:55:43,544 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_1/__init__.py' 2022-12-20T17:55:43,546 adding 'sequana/resources/doc/rnaseq_0/sample1/feature_counts_2/__init__.py' 2022-12-20T17:55:43,549 adding 'sequana/resources/examples/README.rst' 2022-12-20T17:55:43,551 adding 'sequana/resources/examples/__init__.py' 2022-12-20T17:55:43,557 adding 'sequana/resources/examples/test.fastq.gz' 2022-12-20T17:55:43,560 adding 'sequana/resources/examples/test_kraken.out' 2022-12-20T17:55:43,572 adding 'sequana/resources/images/Institut_Pasteur.png' 2022-12-20T17:55:43,575 adding 'sequana/resources/images/__init__.py' 2022-12-20T17:55:43,578 adding 'sequana/resources/images/no_data.jpg' 2022-12-20T17:55:43,581 adding 'sequana/resources/images/no_data.png' 2022-12-20T17:55:43,584 adding 'sequana/resources/js/__init__.py' 2022-12-20T17:55:43,594 adding 'sequana/resources/js/bootstrap.min.js' 2022-12-20T17:55:43,600 adding 'sequana/resources/js/buttons.html5.min.js' 2022-12-20T17:55:43,603 adding 'sequana/resources/js/buttons.print.min.js' 2022-12-20T17:55:43,657 adding 'sequana/resources/js/canvasjs.min.js' 2022-12-20T17:55:43,667 adding 'sequana/resources/js/dataTables.buttons.min.js' 2022-12-20T17:55:43,768 adding 'sequana/resources/js/jquery-2.1.1.js' 2022-12-20T17:55:43,801 adding 'sequana/resources/js/jquery-3.1.1.min.js' 2022-12-20T17:55:43,832 adding 'sequana/resources/js/jquery-3.2.1.min.js' 2022-12-20T17:55:43,864 adding 'sequana/resources/js/jquery-3.5.1.min.js' 2022-12-20T17:55:43,894 adding 'sequana/resources/js/jquery.dataTables.min.js' 2022-12-20T17:55:43,898 adding 'sequana/resources/js/jquery.dropdown.min.js' 2022-12-20T17:55:43,901 adding 'sequana/resources/js/jquery.tocPlugin.js' 2022-12-20T17:55:43,907 adding 'sequana/resources/js/papaparse.min.js' 2022-12-20T17:55:43,910 adding 'sequana/resources/snpeff/__init__.py' 2022-12-20T17:55:43,914 adding 'sequana/resources/snpeff/snpEff.config' 2022-12-20T17:55:43,917 adding 'sequana/resources/templates/__init__.py' 2022-12-20T17:55:43,920 adding 'sequana/resources/templates/base.html' 2022-12-20T17:55:43,922 adding 'sequana/resources/templates/joint_calling.html' 2022-12-20T17:55:43,926 adding 'sequana/resources/templates/rnadiff_light_template.R' 2022-12-20T17:55:43,928 adding 'sequana/resources/templates/standard.html' 2022-12-20T17:55:43,932 adding 'sequana/resources/testing/README.rst' 2022-12-20T17:55:43,934 adding 'sequana/resources/testing/__init__.py' 2022-12-20T17:55:43,937 adding 'sequana/resources/testing/adapters_with_duplicates.fa' 2022-12-20T17:55:43,956 adding 'sequana/resources/testing/test.fasta' 2022-12-20T17:55:43,958 adding 'sequana/resources/testing/test_R1_.unmapped.fastq' 2022-12-20T17:55:43,989 adding 'sequana/resources/testing/test_blast_ebi.xml' 2022-12-20T17:55:44,000 adding 'sequana/resources/testing/test_blast_local.xml' 2022-12-20T17:55:44,081 adding 'sequana/resources/testing/test_coverage.csv' 2022-12-20T17:55:44,091 adding 'sequana/resources/testing/test_dag.ann.dot' 2022-12-20T17:55:44,093 adding 'sequana/resources/testing/test_expdesign_Hm2.csv' 2022-12-20T17:55:44,096 adding 'sequana/resources/testing/test_expdesign_generic.csv' 2022-12-20T17:55:44,098 adding 'sequana/resources/testing/test_expdesign_hiseq_duplicated_index.csv' 2022-12-20T17:55:44,101 adding 'sequana/resources/testing/test_expdesign_miseq_illumina.csv' 2022-12-20T17:55:44,104 adding 'sequana/resources/testing/test_expdesign_miseq_illumina_semicommas.csv.fixed' 2022-12-20T17:55:44,106 adding 'sequana/resources/testing/test_expdesign_rubicon.csv' 2022-12-20T17:55:44,109 adding 'sequana/resources/testing/test_index_mapper.csv' 2022-12-20T17:55:44,111 adding 'sequana/resources/testing/test_kraken.out.summary' 2022-12-20T17:55:44,114 adding 'sequana/resources/testing/test_samplesheet_wrong_characters.csv' 2022-12-20T17:55:44,670 adding 'sequana/resources/testing/test_snpeff_ref.gb' 2022-12-20T17:55:44,686 adding 'sequana/resources/testing/test_taxon_rtd.csv' 2022-12-20T17:55:44,689 adding 'sequana/rules/README.rst' 2022-12-20T17:55:44,691 adding 'sequana/rules/__init__.py' 2022-12-20T17:55:44,695 adding 'sequana/rules/DupRadar/DupRadar.rules' 2022-12-20T17:55:44,697 adding 'sequana/rules/Pacbio/__init__.py' 2022-12-20T17:55:44,700 adding 'sequana/rules/SnpEff/__init__.py' 2022-12-20T17:55:44,704 adding 'sequana/rules/SnpEff/snpeff/1.0/snpeff.rules' 2022-12-20T17:55:44,707 adding 'sequana/rules/SnpEff/snpeff/1.1/snpeff.rules' 2022-12-20T17:55:44,711 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.0/snpeff_add_locus_in_fasta.rules' 2022-12-20T17:55:44,715 adding 'sequana/rules/SnpEff/snpeff_add_locus_in_fasta/1.1/snpeff_add_locus_in_fasta.rules' 2022-12-20T17:55:44,718 adding 'sequana/rules/SnpEff/snpeff_create_database/snpeff_create_database.rules' 2022-12-20T17:55:44,721 adding 'sequana/rules/bamCoverage/bamCoverage.rules' 2022-12-20T17:55:44,724 adding 'sequana/rules/bam_quality_filter/bam_quality_filter.rules' 2022-12-20T17:55:44,727 adding 'sequana/rules/bed_to_gff/bed_to_gff.rules' 2022-12-20T17:55:44,731 adding 'sequana/rules/bwa_bam_to_fastq/bwa_bam_to_fastq.rules' 2022-12-20T17:55:44,734 adding 'sequana/rules/codecs/__init__.py' 2022-12-20T17:55:44,737 adding 'sequana/rules/codecs/bz2_to_dsrc/bz2_to_dsrc.rules' 2022-12-20T17:55:44,740 adding 'sequana/rules/codecs/bz2_to_fastq/bz2_to_fastq.rules' 2022-12-20T17:55:44,743 adding 'sequana/rules/codecs/dsrc_to_bz2/dsrc_to_bz2.rules' 2022-12-20T17:55:44,746 adding 'sequana/rules/codecs/dsrc_to_fastq/dsrc_to_fastq.rules' 2022-12-20T17:55:44,749 adding 'sequana/rules/codecs/fastq_to_bz2/fastq_to_bz2.rules' 2022-12-20T17:55:44,753 adding 'sequana/rules/codecs/fastq_to_dsrc/fastq_to_dsrc.rules' 2022-12-20T17:55:44,756 adding 'sequana/rules/codecs/fastq_to_gz/fastq_to_gz.rules' 2022-12-20T17:55:44,759 adding 'sequana/rules/codecs/gz_to_dsrc/gz_to_dsrc.rules' 2022-12-20T17:55:44,762 adding 'sequana/rules/codecs/gz_to_fastq/gz_to_fastq.rules' 2022-12-20T17:55:44,765 adding 'sequana/rules/codecs/vcf_to_bcf/vcf_to_bcf.rules' 2022-12-20T17:55:44,768 adding 'sequana/rules/copy_multiple_files/copy_multiple_files.rules' 2022-12-20T17:55:44,772 adding 'sequana/rules/cutadapt/cutadapt.rules' 2022-12-20T17:55:44,776 adding 'sequana/rules/dag/dag.rules' 2022-12-20T17:55:44,779 adding 'sequana/rules/deeptools/__init__.py' 2022-12-20T17:55:44,782 adding 'sequana/rules/deeptools/BamPEFragmentSize/BamPEFragmentSize.rules' 2022-12-20T17:55:44,786 adding 'sequana/rules/deeptools/multiBamSummary/multiBamSummary.rules' 2022-12-20T17:55:44,789 adding 'sequana/rules/deeptools/plotCorrelation/plotCorrelation.rules' 2022-12-20T17:55:44,792 adding 'sequana/rules/deeptools/plotCoverage/plotCoverage.rules' 2022-12-20T17:55:44,795 adding 'sequana/rules/extract_fasta_from_bed/extract_fasta_from_bed.rules' 2022-12-20T17:55:44,799 adding 'sequana/rules/fastp/fastp.rules' 2022-12-20T17:55:44,802 adding 'sequana/rules/fastq_sampling/fastq_sampling.rules' 2022-12-20T17:55:44,806 adding 'sequana/rules/fastq_screen/fastq_screen.rules' 2022-12-20T17:55:44,810 adding 'sequana/rules/fastq_screen_report/fastq_screen_report.rules' 2022-12-20T17:55:44,813 adding 'sequana/rules/fastqc/fastqc.rules' 2022-12-20T17:55:44,816 adding 'sequana/rules/format_contigs/format_contigs.rules' 2022-12-20T17:55:44,819 adding 'sequana/rules/freebayes/freebayes.rules' 2022-12-20T17:55:44,822 adding 'sequana/rules/freebayes_bcf_filter/freebayes_bcf_filter.rules' 2022-12-20T17:55:44,826 adding 'sequana/rules/freebayes_vcf_filter/freebayes_vcf_filter.rules' 2022-12-20T17:55:44,829 adding 'sequana/rules/idr/__init__.py' 2022-12-20T17:55:44,832 adding 'sequana/rules/idr/compute_idr/compute_idr.rules' 2022-12-20T17:55:44,836 adding 'sequana/rules/idr/intersectionApproach/intersectionApproach.rules' 2022-12-20T17:55:44,839 adding 'sequana/rules/idr/metrics_peaks/metrics_peaks.rules' 2022-12-20T17:55:44,844 adding 'sequana/rules/idr/preIDR_dynamic/preIDR_dynamic.rules' 2022-12-20T17:55:44,847 adding 'sequana/rules/idr/select_peaks/select_peaks.rules' 2022-12-20T17:55:44,851 adding 'sequana/rules/idr/stats_peakCalling/stats_peakCalling.rules' 2022-12-20T17:55:44,854 adding 'sequana/rules/idr/union_peaks/union_peaks.rules' 2022-12-20T17:55:44,857 adding 'sequana/rules/igvtools/igvtools.rules' 2022-12-20T17:55:44,860 adding 'sequana/rules/indel_realigner/indel_realigner.rules' 2022-12-20T17:55:44,864 adding 'sequana/rules/joint_freebayes_vcf_filter/joint_freebayes_vcf_filter.rules' 2022-12-20T17:55:44,868 adding 'sequana/rules/kraken/1.0/kraken.rules' 2022-12-20T17:55:44,872 adding 'sequana/rules/kraken/1.1/kraken.rules' 2022-12-20T17:55:44,876 adding 'sequana/rules/kraken/2.0/kraken.rules' 2022-12-20T17:55:44,879 adding 'sequana/rules/miRNA_count_dynamic/miRNA_count_dynamic.rules' 2022-12-20T17:55:44,882 adding 'sequana/rules/multiqc/multiqc.rules' 2022-12-20T17:55:44,885 adding 'sequana/rules/multiqc/2.0/multiqc.rules' 2022-12-20T17:55:44,889 adding 'sequana/rules/multiqc2/multiqc2.rules' 2022-12-20T17:55:44,892 adding 'sequana/rules/pacbio_quality/pacbio_quality.rules' 2022-12-20T17:55:44,895 adding 'sequana/rules/picard-tools/__init__.py' 2022-12-20T17:55:44,899 adding 'sequana/rules/picard-tools/CollectInsertSizeMetrics/CollectInsertSizeMetrics.rules' 2022-12-20T17:55:44,902 adding 'sequana/rules/picard-tools/add_read_group/add_read_group.rules' 2022-12-20T17:55:44,905 adding 'sequana/rules/picard-tools/create_sequence_dictionary/create_sequence_dictionary.rules' 2022-12-20T17:55:44,908 adding 'sequana/rules/picard-tools/mark_duplicates/mark_duplicates.rules' 2022-12-20T17:55:44,911 adding 'sequana/rules/picard-tools/reorderSam/reorderSam.rules' 2022-12-20T17:55:44,915 adding 'sequana/rules/prokka/prokka.rules' 2022-12-20T17:55:44,918 adding 'sequana/rules/revcomp_rule/revcomp_rule.rules' 2022-12-20T17:55:44,922 adding 'sequana/rules/rnaseqc/rnaseqc.rules' 2022-12-20T17:55:44,925 adding 'sequana/rules/rulegraph/rulegraph.rules' 2022-12-20T17:55:44,928 adding 'sequana/rules/salmon_index/salmon_index.rules' 2022-12-20T17:55:44,931 adding 'sequana/rules/salmon_mapping/salmon_mapping.rules' 2022-12-20T17:55:44,935 adding 'sequana/rules/sambamba/__init__.py' 2022-12-20T17:55:44,938 adding 'sequana/rules/sambamba/sambamba_filter/sambamba_filter.rules' 2022-12-20T17:55:44,941 adding 'sequana/rules/sambamba/sambamba_markdup/sambamba_markdup.rules' 2022-12-20T17:55:44,944 adding 'sequana/rules/samtools_depth/samtools_depth.rules' 2022-12-20T17:55:44,948 adding 'sequana/rules/samtools_sort/samtools_sort.rules' 2022-12-20T17:55:44,951 adding 'sequana/rules/spades_get_fastq/spades_get_fastq.rules' 2022-12-20T17:55:44,954 adding 'sequana/rules/spikes_counting/spikes_counting.rules' 2022-12-20T17:55:44,958 adding 'sequana/rules/spp/spp.rules' 2022-12-20T17:55:44,961 adding 'sequana/rules/summary_pipeline/summary_pipeline.rules' 2022-12-20T17:55:44,964 adding 'sequana/rules/tophat_mapping/tophat_mapping.rules' 2022-12-20T17:55:44,967 adding 'sequana/scripts/__init__.py' 2022-12-20T17:55:44,974 adding 'sequana/scripts/coverage.py' 2022-12-20T17:55:44,978 adding 'sequana/scripts/substractor.py' 2022-12-20T17:55:44,982 adding 'sequana/scripts/taxonomy.py' 2022-12-20T17:55:44,985 adding 'sequana/scripts/main/__init__.py' 2022-12-20T17:55:44,988 adding 'sequana/scripts/main/biomart.py' 2022-12-20T17:55:44,992 adding 'sequana/scripts/main/enrichment_kegg.py' 2022-12-20T17:55:44,995 adding 'sequana/scripts/main/enrichment_panther.py' 2022-12-20T17:55:44,999 adding 'sequana/scripts/main/enrichment_uniprot.py' 2022-12-20T17:55:45,002 adding 'sequana/scripts/main/fasta.py' 2022-12-20T17:55:45,005 adding 'sequana/scripts/main/fastq.py' 2022-12-20T17:55:45,008 adding 'sequana/scripts/main/feature_count.py' 2022-12-20T17:55:45,010 adding 'sequana/scripts/main/gff_to_gtf.py' 2022-12-20T17:55:45,013 adding 'sequana/scripts/main/gff_to_light_gff.py' 2022-12-20T17:55:45,016 adding 'sequana/scripts/main/gtf_fixer.py' 2022-12-20T17:55:45,020 adding 'sequana/scripts/main/lane_merging.py' 2022-12-20T17:55:45,023 adding 'sequana/scripts/main/main.py' 2022-12-20T17:55:45,026 adding 'sequana/scripts/main/mapping.py' 2022-12-20T17:55:45,028 adding 'sequana/scripts/main/ribodesigner.py' 2022-12-20T17:55:45,034 adding 'sequana/scripts/main/rnadiff.py' 2022-12-20T17:55:45,037 adding 'sequana/scripts/main/rnaseq_compare.py' 2022-12-20T17:55:45,039 adding 'sequana/scripts/main/salmon.py' 2022-12-20T17:55:45,042 adding 'sequana/scripts/main/samplesheet.py' 2022-12-20T17:55:45,045 adding 'sequana/scripts/main/summary.py' 2022-12-20T17:55:45,048 adding 'sequana/scripts/main/taxonomy.py' 2022-12-20T17:55:45,051 adding 'sequana/scripts/main/utils.py' 2022-12-20T17:55:45,054 adding 'sequana/utils/__init__.py' 2022-12-20T17:55:45,057 adding 'sequana/utils/config.py' 2022-12-20T17:55:45,062 adding 'sequana/utils/datatables_js.py' 2022-12-20T17:55:45,065 adding 'sequana/utils/df2html.py' 2022-12-20T17:55:45,067 adding 'sequana/utils/pandas.py' 2022-12-20T17:55:45,070 adding 'sequana/utils/singleton.py' 2022-12-20T17:55:45,073 adding 'sequana/utils/tree.py' 2022-12-20T17:55:45,076 adding 'sequana/viz/__init__.py' 2022-12-20T17:55:45,079 adding 'sequana/viz/anova.py' 2022-12-20T17:55:45,081 adding 'sequana/viz/boxplot.py' 2022-12-20T17:55:45,085 adding 'sequana/viz/clusterisation.py' 2022-12-20T17:55:45,087 adding 'sequana/viz/core.py' 2022-12-20T17:55:45,093 adding 'sequana/viz/corrplot.py' 2022-12-20T17:55:45,097 adding 'sequana/viz/dendogram.py' 2022-12-20T17:55:45,104 adding 'sequana/viz/heatmap.py' 2022-12-20T17:55:45,107 adding 'sequana/viz/hinton.py' 2022-12-20T17:55:45,110 adding 'sequana/viz/hist2d.py' 2022-12-20T17:55:45,113 adding 'sequana/viz/imshow.py' 2022-12-20T17:55:45,116 adding 'sequana/viz/isomap.py' 2022-12-20T17:55:45,119 adding 'sequana/viz/linkage.py' 2022-12-20T17:55:45,122 adding 'sequana/viz/mds.py' 2022-12-20T17:55:45,125 adding 'sequana/viz/pca.py' 2022-12-20T17:55:45,129 adding 'sequana/viz/scatter.py' 2022-12-20T17:55:45,132 adding 'sequana/viz/venn.py' 2022-12-20T17:55:45,135 adding 'sequana/viz/volcano.py' 2022-12-20T17:55:45,140 adding 'sequana-0.14.6.dist-info/LICENSE' 2022-12-20T17:55:45,144 adding 'sequana-0.14.6.dist-info/METADATA' 2022-12-20T17:55:45,146 adding 'sequana-0.14.6.dist-info/WHEEL' 2022-12-20T17:55:45,148 adding 'sequana-0.14.6.dist-info/entry_points.txt' 2022-12-20T17:55:45,149 adding 'sequana-0.14.6.dist-info/top_level.txt' 2022-12-20T17:55:45,162 adding 'sequana-0.14.6.dist-info/RECORD' 2022-12-20T17:55:45,256 removing build/bdist.linux-armv7l/wheel 2022-12-20T17:55:45,746 Building wheel for sequana (setup.py): finished with status 'done' 2022-12-20T17:55:45,809 Created wheel for sequana: filename=sequana-0.14.6-py3-none-any.whl size=1899002 sha256=eaaa378cecea1d57b0a7e8a2f4c3154bfd0a5340d57d973eb2c247bcacc3b5ec 2022-12-20T17:55:45,811 Stored in directory: /tmp/pip-ephem-wheel-cache-fg8cqt0i/wheels/2f/d3/65/06f61a0acb8eb4f6d856b845aa64f4944d5a99e1742b69d205 2022-12-20T17:55:45,869 Successfully built sequana 2022-12-20T17:55:45,995 Removed build tracker: '/tmp/pip-build-tracker-_bhhze9z'