2022-12-20T21:17:45,468 Created temporary directory: /tmp/pip-ephem-wheel-cache-36d1fop1 2022-12-20T21:17:45,472 Created temporary directory: /tmp/pip-build-tracker-wmpdje2g 2022-12-20T21:17:45,473 Initialized build tracking at /tmp/pip-build-tracker-wmpdje2g 2022-12-20T21:17:45,473 Created build tracker: /tmp/pip-build-tracker-wmpdje2g 2022-12-20T21:17:45,474 Entered build tracker: /tmp/pip-build-tracker-wmpdje2g 2022-12-20T21:17:45,475 Created temporary directory: /tmp/pip-wheel-30jc5o1z 2022-12-20T21:17:45,483 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-20T21:17:45,489 Created temporary directory: /tmp/pip-ephem-wheel-cache-mqt9at2i 2022-12-20T21:17:45,545 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-20T21:17:45,552 2 location(s) to search for versions of sigprofilerassignment: 2022-12-20T21:17:45,552 * https://pypi.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,552 * https://www.piwheels.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,553 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,554 Getting page https://pypi.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,558 Found index url https://pypi.org/simple 2022-12-20T21:17:45,803 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2022-12-20T21:17:45,825 Skipping link: No binaries permitted for sigprofilerassignment: 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2022-12-20T21:17:45,828 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-12-20T21:17:45,829 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2022-12-20T21:17:45,830 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-12-20T21:17:45,830 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2022-12-20T21:17:45,850 Found link https://files.pythonhosted.org/packages/fc/16/c115990c96ef0a4707ef4beb2e4e42da6b40b47d5dde5ea20afaaf28c0e7/SigProfilerAssignment-0.0.21.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.21 2022-12-20T21:17:45,851 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/22/d7/f92b2deff403ceccb880d18574e271b6c16fc8e9b0e5d6e16680c61e8329/SigProfilerAssignment-0.0.22-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-12-20T21:17:45,851 Found link https://files.pythonhosted.org/packages/22/ab/8c5ef4325bc74b85006c590c76b3a315ece43ade098fab738ef785e8f2c7/SigProfilerAssignment-0.0.22.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.22 2022-12-20T21:17:45,852 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/37/1c/95d8594a43cac1bf505b57a3ce7e010e6ef768809a17854100552161d7ca/SigProfilerAssignment-0.0.23-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2022-12-20T21:17:45,852 Found link https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.23 2022-12-20T21:17:45,853 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,854 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2022-12-20T21:17:45,856 Found index url https://www.piwheels.org/simple 2022-12-20T21:17:46,095 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2022-12-20T21:17:46,112 Skipping link: No binaries permitted for sigprofilerassignment: 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=6db83fcf7669f563330e9c8b69ef89320b6bee775bb5b7c13f6fa480b75c6c6e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,121 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,122 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,122 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,123 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,123 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2022-12-20T21:17:46,124 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2022-12-20T21:17:46,124 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2022-12-20T21:17:46,165 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2022-12-20T21:17:46,195 Collecting sigprofilerassignment==0.0.23 2022-12-20T21:17:46,200 Created temporary directory: /tmp/pip-unpack-1w_rrlah 2022-12-20T21:17:46,888 Downloading SigProfilerAssignment-0.0.23.tar.gz (4.6 MB) 2022-12-20T21:17:50,793 Added sigprofilerassignment==0.0.23 from https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz to build tracker '/tmp/pip-build-tracker-wmpdje2g' 2022-12-20T21:17:50,797 Running setup.py (path:/tmp/pip-wheel-30jc5o1z/sigprofilerassignment_56e22d0900c4419099c10ca12a1969b9/setup.py) egg_info for package sigprofilerassignment 2022-12-20T21:17:50,798 Created temporary directory: /tmp/pip-pip-egg-info-rq18jewu 2022-12-20T21:17:50,799 Preparing metadata (setup.py): started 2022-12-20T21:17:50,801 Running command python setup.py egg_info 2022-12-20T21:17:54,279 running egg_info 2022-12-20T21:17:54,285 creating /tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info 2022-12-20T21:17:54,390 writing /tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/PKG-INFO 2022-12-20T21:17:54,396 writing dependency_links to /tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/dependency_links.txt 2022-12-20T21:17:54,401 writing requirements to /tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/requires.txt 2022-12-20T21:17:54,404 writing top-level names to /tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/top_level.txt 2022-12-20T21:17:54,407 writing manifest file '/tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-12-20T21:17:54,686 reading manifest file '/tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-12-20T21:17:54,690 reading manifest template 'MANIFEST.in' 2022-12-20T21:17:54,722 adding license file 'LICENSE.txt' 2022-12-20T21:17:54,742 writing manifest file '/tmp/pip-pip-egg-info-rq18jewu/SigProfilerAssignment.egg-info/SOURCES.txt' 2022-12-20T21:17:54,948 Preparing metadata (setup.py): finished with status 'done' 2022-12-20T21:17:54,965 Source in /tmp/pip-wheel-30jc5o1z/sigprofilerassignment_56e22d0900c4419099c10ca12a1969b9 has version 0.0.23, which satisfies requirement sigprofilerassignment==0.0.23 from https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz 2022-12-20T21:17:54,967 Removed sigprofilerassignment==0.0.23 from https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz from build tracker '/tmp/pip-build-tracker-wmpdje2g' 2022-12-20T21:17:55,199 Created temporary directory: /tmp/pip-unpack-tbsa7yt3 2022-12-20T21:17:55,201 Building wheels for collected packages: sigprofilerassignment 2022-12-20T21:17:55,430 Created temporary directory: /tmp/pip-wheel-41i_w8az 2022-12-20T21:17:55,431 Building wheel for sigprofilerassignment (setup.py): started 2022-12-20T21:17:55,433 Destination directory: /tmp/pip-wheel-41i_w8az 2022-12-20T21:17:55,433 Running command python setup.py bdist_wheel 2022-12-20T21:17:58,895 running bdist_wheel 2022-12-20T21:18:00,024 running build 2022-12-20T21:18:00,025 running build_py 2022-12-20T21:18:00,169 creating build 2022-12-20T21:18:00,169 creating build/lib 2022-12-20T21:18:00,170 creating build/lib/SigProfilerAssignment 2022-12-20T21:18:00,172 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,179 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,184 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,188 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,194 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,197 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2022-12-20T21:18:00,200 running egg_info 2022-12-20T21:18:00,405 writing SigProfilerAssignment.egg-info/PKG-INFO 2022-12-20T21:18:00,410 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2022-12-20T21:18:00,414 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2022-12-20T21:18:00,417 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2022-12-20T21:18:00,513 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-12-20T21:18:00,527 reading manifest template 'MANIFEST.in' 2022-12-20T21:18:00,552 adding license file 'LICENSE.txt' 2022-12-20T21:18:00,579 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2022-12-20T21:18:00,585 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,585 !! 2022-12-20T21:18:00,587 ############################ 2022-12-20T21:18:00,587 # Package would be ignored # 2022-12-20T21:18:00,587 ############################ 2022-12-20T21:18:00,588 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2022-12-20T21:18:00,588 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,588 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2022-12-20T21:18:00,589 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,589 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,590 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2022-12-20T21:18:00,590 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,590 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,591 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,591 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,591 documentation page. 2022-12-20T21:18:00,592 !! 2022-12-20T21:18:00,593 check.warn(importable) 2022-12-20T21:18:00,593 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,594 !! 2022-12-20T21:18:00,595 ############################ 2022-12-20T21:18:00,595 # Package would be ignored # 2022-12-20T21:18:00,595 ############################ 2022-12-20T21:18:00,595 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package, 2022-12-20T21:18:00,596 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,596 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' has been automatically added to the distribution only 2022-12-20T21:18:00,597 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,597 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,598 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is included as a package by using 2022-12-20T21:18:00,598 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,598 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,599 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,599 documentation page. 2022-12-20T21:18:00,600 !! 2022-12-20T21:18:00,601 check.warn(importable) 2022-12-20T21:18:00,601 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,601 !! 2022-12-20T21:18:00,602 ############################ 2022-12-20T21:18:00,602 # Package would be ignored # 2022-12-20T21:18:00,603 ############################ 2022-12-20T21:18:00,603 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package, 2022-12-20T21:18:00,603 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,604 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' has been automatically added to the distribution only 2022-12-20T21:18:00,604 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,604 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,605 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is included as a package by using 2022-12-20T21:18:00,605 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,605 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,606 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,607 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,607 documentation page. 2022-12-20T21:18:00,608 !! 2022-12-20T21:18:00,608 check.warn(importable) 2022-12-20T21:18:00,609 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,609 !! 2022-12-20T21:18:00,610 ############################ 2022-12-20T21:18:00,610 # Package would be ignored # 2022-12-20T21:18:00,610 ############################ 2022-12-20T21:18:00,611 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2022-12-20T21:18:00,611 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,611 'SigProfilerAssignment.data' has been automatically added to the distribution only 2022-12-20T21:18:00,612 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,612 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,613 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2022-12-20T21:18:00,613 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,613 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,614 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,614 documentation page. 2022-12-20T21:18:00,615 !! 2022-12-20T21:18:00,616 check.warn(importable) 2022-12-20T21:18:00,616 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,616 !! 2022-12-20T21:18:00,617 ############################ 2022-12-20T21:18:00,617 # Package would be ignored # 2022-12-20T21:18:00,618 ############################ 2022-12-20T21:18:00,618 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2022-12-20T21:18:00,618 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,619 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2022-12-20T21:18:00,619 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,619 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,620 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2022-12-20T21:18:00,620 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,621 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,621 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,621 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,622 documentation page. 2022-12-20T21:18:00,623 !! 2022-12-20T21:18:00,623 check.warn(importable) 2022-12-20T21:18:00,624 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,624 !! 2022-12-20T21:18:00,625 ############################ 2022-12-20T21:18:00,625 # Package would be ignored # 2022-12-20T21:18:00,625 ############################ 2022-12-20T21:18:00,626 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2022-12-20T21:18:00,626 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,627 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2022-12-20T21:18:00,627 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,627 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,628 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2022-12-20T21:18:00,628 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,628 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,628 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,629 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,629 documentation page. 2022-12-20T21:18:00,630 !! 2022-12-20T21:18:00,631 check.warn(importable) 2022-12-20T21:18:00,631 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,631 !! 2022-12-20T21:18:00,632 ############################ 2022-12-20T21:18:00,632 # Package would be ignored # 2022-12-20T21:18:00,633 ############################ 2022-12-20T21:18:00,633 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2022-12-20T21:18:00,633 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,634 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2022-12-20T21:18:00,634 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,634 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,635 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2022-12-20T21:18:00,635 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,636 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,636 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,636 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,637 documentation page. 2022-12-20T21:18:00,638 !! 2022-12-20T21:18:00,638 check.warn(importable) 2022-12-20T21:18:00,638 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,639 !! 2022-12-20T21:18:00,640 ############################ 2022-12-20T21:18:00,640 # Package would be ignored # 2022-12-20T21:18:00,640 ############################ 2022-12-20T21:18:00,640 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2022-12-20T21:18:00,641 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,641 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2022-12-20T21:18:00,642 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,642 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,642 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2022-12-20T21:18:00,643 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,643 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,644 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,644 documentation page. 2022-12-20T21:18:00,645 !! 2022-12-20T21:18:00,645 check.warn(importable) 2022-12-20T21:18:00,646 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,646 !! 2022-12-20T21:18:00,647 ############################ 2022-12-20T21:18:00,647 # Package would be ignored # 2022-12-20T21:18:00,648 ############################ 2022-12-20T21:18:00,648 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2022-12-20T21:18:00,648 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,649 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2022-12-20T21:18:00,649 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,649 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,650 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2022-12-20T21:18:00,650 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,651 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,651 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,652 documentation page. 2022-12-20T21:18:00,653 !! 2022-12-20T21:18:00,653 check.warn(importable) 2022-12-20T21:18:00,654 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,654 !! 2022-12-20T21:18:00,655 ############################ 2022-12-20T21:18:00,655 # Package would be ignored # 2022-12-20T21:18:00,655 ############################ 2022-12-20T21:18:00,656 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2022-12-20T21:18:00,656 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,657 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2022-12-20T21:18:00,657 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,657 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,658 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2022-12-20T21:18:00,658 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,659 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,659 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,660 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,660 documentation page. 2022-12-20T21:18:00,661 !! 2022-12-20T21:18:00,662 check.warn(importable) 2022-12-20T21:18:00,662 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,662 !! 2022-12-20T21:18:00,663 ############################ 2022-12-20T21:18:00,664 # Package would be ignored # 2022-12-20T21:18:00,664 ############################ 2022-12-20T21:18:00,664 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2022-12-20T21:18:00,664 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,665 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2022-12-20T21:18:00,665 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,666 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,667 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2022-12-20T21:18:00,667 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,667 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,668 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,668 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,669 documentation page. 2022-12-20T21:18:00,670 !! 2022-12-20T21:18:00,670 check.warn(importable) 2022-12-20T21:18:00,671 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2022-12-20T21:18:00,671 !! 2022-12-20T21:18:00,673 ############################ 2022-12-20T21:18:00,673 # Package would be ignored # 2022-12-20T21:18:00,673 ############################ 2022-12-20T21:18:00,674 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2022-12-20T21:18:00,674 but it is not listed in the `packages` configuration of setuptools. 2022-12-20T21:18:00,675 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2022-12-20T21:18:00,675 because it may contain data files, but this behavior is likely to change 2022-12-20T21:18:00,675 in future versions of setuptools (and therefore is considered deprecated). 2022-12-20T21:18:00,676 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2022-12-20T21:18:00,677 the `packages` configuration field or the proper discovery methods 2022-12-20T21:18:00,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-20T21:18:00,678 instead of `find_packages(...)`/`find:`). 2022-12-20T21:18:00,679 You can read more about "package discovery" and "data files" on setuptools 2022-12-20T21:18:00,679 documentation page. 2022-12-20T21:18:00,680 !! 2022-12-20T21:18:00,681 check.warn(importable) 2022-12-20T21:18:00,681 creating build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,681 copying SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,682 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,682 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,682 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,683 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,683 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,685 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,690 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,695 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:00,708 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:00,710 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:00,715 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:00,719 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-12-20T21:18:00,721 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-12-20T21:18:00,762 creating build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,763 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,768 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,772 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,777 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,780 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,793 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,818 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,822 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,827 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,832 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,837 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2022-12-20T21:18:00,844 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2022-12-20T21:18:00,844 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,846 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,852 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,858 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,864 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,871 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,877 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,882 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,888 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,902 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,921 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,928 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,934 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,940 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:00,955 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,181 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,194 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,200 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,206 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,212 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,218 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,230 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,243 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,248 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,254 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,259 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,270 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:01,280 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,282 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,294 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,300 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,307 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,321 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,332 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,338 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,354 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,366 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,371 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,377 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,388 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,399 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,405 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,411 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,422 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,434 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,440 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,446 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,458 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:01,468 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,470 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,477 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,484 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,491 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,499 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,505 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,510 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,522 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,535 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,540 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,549 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,560 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,578 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,583 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,589 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,601 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,615 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,621 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,626 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,639 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:01,651 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,653 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,660 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,667 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,674 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,683 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,688 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,713 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,724 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,737 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,742 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,748 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,761 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,774 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,780 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,785 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,798 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,812 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,818 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,824 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,836 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:01,849 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,851 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,858 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,865 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,872 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,880 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,886 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,892 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,905 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,917 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,923 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,929 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,942 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,955 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,961 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,967 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,979 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,992 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:01,998 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:02,004 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:02,016 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:02,028 creating build/lib/SigProfilerAssignment/data/tests 2022-12-20T21:18:02,029 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-12-20T21:18:02,032 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2022-12-20T21:18:02,056 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,057 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,062 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,067 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,072 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,077 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,081 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,085 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,088 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,095 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,108 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,119 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,138 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,472 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-20T21:18:02,473 setuptools.SetuptoolsDeprecationWarning, 2022-12-20T21:18:02,567 installing to build/bdist.linux-armv7l/wheel 2022-12-20T21:18:02,568 running install 2022-12-20T21:18:02,629 running install_lib 2022-12-20T21:18:02,733 creating build/bdist.linux-armv7l 2022-12-20T21:18:02,734 creating build/bdist.linux-armv7l/wheel 2022-12-20T21:18:02,738 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:02,741 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,744 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,750 copying build/lib/SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,755 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,761 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:02,763 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:02,770 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-12-20T21:18:02,772 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2022-12-20T21:18:02,813 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2022-12-20T21:18:02,817 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,824 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,830 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,835 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,840 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,845 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2022-12-20T21:18:02,859 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:02,867 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:02,875 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:02,880 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,882 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,887 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,912 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,916 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,920 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,927 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,932 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:02,937 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2022-12-20T21:18:02,939 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-12-20T21:18:02,941 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2022-12-20T21:18:02,966 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,967 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,971 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,976 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,981 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,985 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,989 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2022-12-20T21:18:02,994 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:02,996 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:03,010 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:03,016 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:03,027 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:03,044 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2022-12-20T21:18:03,054 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:03,059 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:03,069 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:03,073 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2022-12-20T21:18:03,077 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2022-12-20T21:18:03,080 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,082 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,087 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,092 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,099 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,114 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,125 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,130 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,135 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,140 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,151 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,155 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,164 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,175 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,180 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,185 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,191 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,204 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,209 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,221 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,233 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2022-12-20T21:18:03,245 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,246 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,252 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,267 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,280 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,286 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,294 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,307 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,315 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,321 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,325 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,330 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,335 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,347 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,355 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,360 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,376 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,381 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,386 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,404 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,419 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2022-12-20T21:18:03,434 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,435 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,447 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,458 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,470 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,474 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,481 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,488 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,494 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,499 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,510 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,514 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,527 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,540 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,555 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,561 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,567 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,571 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,575 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,580 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,586 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2022-12-20T21:18:03,599 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,601 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,605 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,616 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,626 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,637 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,643 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,648 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,652 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,657 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,662 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,672 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,678 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,691 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,696 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,704 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,717 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,722 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,729 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,735 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,741 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,753 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,764 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,770 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,775 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,781 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,786 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2022-12-20T21:18:03,798 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,799 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,806 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,818 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,830 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,834 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,839 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,850 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,867 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,881 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,895 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,906 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,910 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,917 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,921 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,927 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,932 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,937 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,948 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,953 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2022-12-20T21:18:03,958 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:03,963 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:03,966 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2022-12-20T21:18:03,969 running install_egg_info 2022-12-20T21:18:04,075 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.23-py3.7.egg-info 2022-12-20T21:18:04,099 running install_scripts 2022-12-20T21:18:05,014 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2022-12-20T21:18:05,544 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.23.dist-info/WHEEL 2022-12-20T21:18:05,549 creating '/tmp/pip-wheel-41i_w8az/SigProfilerAssignment-0.0.23-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-20T21:18:05,562 adding 'SigProfilerAssignment/Analyzer.py' 2022-12-20T21:18:05,571 adding 'SigProfilerAssignment/__init__.py' 2022-12-20T21:18:05,588 adding 'SigProfilerAssignment/decompose_subroutines.py' 2022-12-20T21:18:05,610 adding 'SigProfilerAssignment/decomposition.py' 2022-12-20T21:18:05,652 adding 'SigProfilerAssignment/single_sample.py' 2022-12-20T21:18:05,798 adding 'SigProfilerAssignment/version.py' 2022-12-20T21:18:05,955 adding 'SigProfilerAssignment/DecompositionPlots/.DS_Store' 2022-12-20T21:18:05,961 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2022-12-20T21:18:05,966 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2022-12-20T21:18:05,970 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2022-12-20T21:18:05,974 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2022-12-20T21:18:05,979 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2022-12-20T21:18:06,458 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2022-12-20T21:18:06,467 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2022-12-20T21:18:06,492 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2022-12-20T21:18:06,597 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2022-12-20T21:18:06,767 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2022-12-20T21:18:07,041 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2022-12-20T21:18:07,219 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2022-12-20T21:18:07,280 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2022-12-20T21:18:07,288 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2022-12-20T21:18:07,292 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2022-12-20T21:18:07,348 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2022-12-20T21:18:07,463 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2022-12-20T21:18:07,635 adding 'SigProfilerAssignment/data/Samples.txt' 2022-12-20T21:18:07,648 adding 'SigProfilerAssignment/data/csvexample.csv' 2022-12-20T21:18:07,662 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2022-12-20T21:18:07,678 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2022-12-20T21:18:07,716 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2022-12-20T21:18:07,728 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2022-12-20T21:18:07,749 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2022-12-20T21:18:07,770 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2022-12-20T21:18:07,800 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2022-12-20T21:18:07,808 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2022-12-20T21:18:07,816 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2022-12-20T21:18:07,830 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2022-12-20T21:18:07,915 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2022-12-20T21:18:08,234 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2022-12-20T21:18:08,463 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2022-12-20T21:18:08,482 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2022-12-20T21:18:08,798 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2022-12-20T21:18:08,952 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2022-12-20T21:18:09,045 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2022-12-20T21:18:09,275 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2022-12-20T21:18:09,594 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2022-12-20T21:18:09,998 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2022-12-20T21:18:10,064 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2022-12-20T21:18:10,211 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2022-12-20T21:18:10,304 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2022-12-20T21:18:10,401 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2022-12-20T21:18:10,411 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2022-12-20T21:18:10,419 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2022-12-20T21:18:10,433 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2022-12-20T21:18:10,511 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2022-12-20T21:18:10,593 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2022-12-20T21:18:10,774 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2022-12-20T21:18:10,795 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2022-12-20T21:18:10,871 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2022-12-20T21:18:10,902 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2022-12-20T21:18:10,962 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2022-12-20T21:18:11,114 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2022-12-20T21:18:11,244 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2022-12-20T21:18:11,352 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2022-12-20T21:18:11,382 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2022-12-20T21:18:11,410 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2022-12-20T21:18:11,510 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2022-12-20T21:18:11,620 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2022-12-20T21:18:11,682 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2022-12-20T21:18:11,728 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2022-12-20T21:18:11,825 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2022-12-20T21:18:12,092 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2022-12-20T21:18:12,199 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2022-12-20T21:18:12,207 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2022-12-20T21:18:12,286 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2022-12-20T21:18:12,367 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2022-12-20T21:18:12,392 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2022-12-20T21:18:12,413 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2022-12-20T21:18:12,444 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2022-12-20T21:18:12,474 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2022-12-20T21:18:12,483 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2022-12-20T21:18:12,491 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2022-12-20T21:18:12,576 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2022-12-20T21:18:12,664 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2022-12-20T21:18:12,674 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2022-12-20T21:18:12,682 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2022-12-20T21:18:12,774 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2022-12-20T21:18:12,870 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2022-12-20T21:18:12,880 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2022-12-20T21:18:12,888 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2022-12-20T21:18:12,982 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2022-12-20T21:18:13,083 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2022-12-20T21:18:13,093 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2022-12-20T21:18:13,101 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2022-12-20T21:18:13,180 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2022-12-20T21:18:13,261 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2022-12-20T21:18:13,286 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2022-12-20T21:18:13,307 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2022-12-20T21:18:13,338 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2022-12-20T21:18:13,369 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2022-12-20T21:18:13,377 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2022-12-20T21:18:13,385 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2022-12-20T21:18:13,470 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2022-12-20T21:18:13,558 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2022-12-20T21:18:13,568 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2022-12-20T21:18:13,576 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2022-12-20T21:18:13,668 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2022-12-20T21:18:13,763 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2022-12-20T21:18:13,774 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2022-12-20T21:18:13,781 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2022-12-20T21:18:13,876 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2022-12-20T21:18:13,973 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2022-12-20T21:18:13,983 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2022-12-20T21:18:13,991 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2022-12-20T21:18:14,070 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2022-12-20T21:18:14,151 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2022-12-20T21:18:14,176 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2022-12-20T21:18:14,197 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2022-12-20T21:18:14,227 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2022-12-20T21:18:14,258 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2022-12-20T21:18:14,267 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2022-12-20T21:18:14,274 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2022-12-20T21:18:14,360 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2022-12-20T21:18:14,447 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2022-12-20T21:18:14,458 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2022-12-20T21:18:14,465 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2022-12-20T21:18:14,558 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2022-12-20T21:18:14,653 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2022-12-20T21:18:14,663 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2022-12-20T21:18:14,671 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2022-12-20T21:18:14,765 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2022-12-20T21:18:14,862 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2022-12-20T21:18:14,872 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2022-12-20T21:18:14,880 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2022-12-20T21:18:14,959 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2022-12-20T21:18:15,040 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2022-12-20T21:18:15,206 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2022-12-20T21:18:15,219 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2022-12-20T21:18:15,223 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2022-12-20T21:18:15,227 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2022-12-20T21:18:15,230 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2022-12-20T21:18:15,233 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2022-12-20T21:18:15,235 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2022-12-20T21:18:15,252 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2022-12-20T21:18:15,303 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2022-12-20T21:18:15,351 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2022-12-20T21:18:15,435 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2022-12-20T21:18:15,489 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2022-12-20T21:18:15,496 adding 'SigProfilerAssignment-0.0.23.dist-info/LICENSE.txt' 2022-12-20T21:18:15,500 adding 'SigProfilerAssignment-0.0.23.dist-info/METADATA' 2022-12-20T21:18:15,502 adding 'SigProfilerAssignment-0.0.23.dist-info/WHEEL' 2022-12-20T21:18:15,504 adding 'SigProfilerAssignment-0.0.23.dist-info/top_level.txt' 2022-12-20T21:18:15,511 adding 'SigProfilerAssignment-0.0.23.dist-info/RECORD' 2022-12-20T21:18:15,638 removing build/bdist.linux-armv7l/wheel 2022-12-20T21:18:15,976 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2022-12-20T21:18:16,121 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.23-py3-none-any.whl size=4676758 sha256=af9289f6299e77006cf2748e637567cd57a4e31ba772f840d05eaa4182439a27 2022-12-20T21:18:16,123 Stored in directory: /tmp/pip-ephem-wheel-cache-mqt9at2i/wheels/b8/70/dd/ed211a5870264c8a7e0f7290d061876ad4c0656f6acb172f4b 2022-12-20T21:18:16,173 Successfully built sigprofilerassignment 2022-12-20T21:18:16,573 Removed build tracker: '/tmp/pip-build-tracker-wmpdje2g'