2022-12-21T12:18:35,627 Created temporary directory: /tmp/pip-ephem-wheel-cache-h2_h72rw
2022-12-21T12:18:35,632 Created temporary directory: /tmp/pip-build-tracker-nx68riw_
2022-12-21T12:18:35,633 Initialized build tracking at /tmp/pip-build-tracker-nx68riw_
2022-12-21T12:18:35,633 Created build tracker: /tmp/pip-build-tracker-nx68riw_
2022-12-21T12:18:35,633 Entered build tracker: /tmp/pip-build-tracker-nx68riw_
2022-12-21T12:18:35,635 Created temporary directory: /tmp/pip-wheel-c_vl46yx
2022-12-21T12:18:35,643 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-21T12:18:35,648 Created temporary directory: /tmp/pip-ephem-wheel-cache-9y2zjhpm
2022-12-21T12:18:35,698 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-21T12:18:35,706 2 location(s) to search for versions of biobb-gromacs:
2022-12-21T12:18:35,706 * https://pypi.org/simple/biobb-gromacs/
2022-12-21T12:18:35,706 * https://www.piwheels.org/simple/biobb-gromacs/
2022-12-21T12:18:35,707 Fetching project page and analyzing links: https://pypi.org/simple/biobb-gromacs/
2022-12-21T12:18:35,708 Getting page https://pypi.org/simple/biobb-gromacs/
2022-12-21T12:18:35,711 Found index url https://pypi.org/simple
2022-12-21T12:18:35,934 Fetched page https://pypi.org/simple/biobb-gromacs/ as application/vnd.pypi.simple.v1+json
2022-12-21T12:18:35,938   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/86/a0/f92aeb96c32f5abc4e8642e95ab8248f3105dfde5dd0e89435ae70448607/biobb_gromacs-3.8.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-12-21T12:18:35,939   Found link https://files.pythonhosted.org/packages/2a/4b/be17e7b27a96404d0f87426fbabd98dde1c97a7b8a1c54d041066c23ccf4/biobb_gromacs-3.8.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.0
2022-12-21T12:18:35,940   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/2e/0e/747bdb6621a1a44e3f02427166092650a9a68398395ca67f2937b15d7f41/biobb_gromacs-3.8.1-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-12-21T12:18:35,942   Found link https://files.pythonhosted.org/packages/ea/60/3112f633e90ddc93f3db9c2f4e9e4e3eb1100e3a09c87afbfc7abda281a8/biobb_gromacs-3.8.1.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7), version: 3.8.1
2022-12-21T12:18:35,942   Skipping link: No binaries permitted for biobb-gromacs: https://files.pythonhosted.org/packages/05/a4/d455ddd59bf78a5737d5d259f73dfd02c519a3e283039a8e017a09f1cfa0/biobb_gromacs-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10)
2022-12-21T12:18:35,944   Found link https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz (from https://pypi.org/simple/biobb-gromacs/) (requires-python:>=3.7,<3.10), version: 3.9.0
2022-12-21T12:18:35,945 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-gromacs/
2022-12-21T12:18:35,945 Getting page https://www.piwheels.org/simple/biobb-gromacs/
2022-12-21T12:18:35,947 Found index url https://www.piwheels.org/simple
2022-12-21T12:18:36,158 Fetched page https://www.piwheels.org/simple/biobb-gromacs/ as text/html
2022-12-21T12:18:36,162   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.1-py3-none-any.whl#sha256=dc62def4ee04dacfa7a29ad52d42e1fa4c563b5ce844e1ae8f55221271bf2382 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-12-21T12:18:36,163   Skipping link: No binaries permitted for biobb-gromacs: https://www.piwheels.org/simple/biobb-gromacs/biobb_gromacs-3.8.0-py3-none-any.whl#sha256=7add16113788a2a933020f11c3ee9750cca1751c59ff4805bf3cc10ad2088928 (from https://www.piwheels.org/simple/biobb-gromacs/) (requires-python:>=3.7)
2022-12-21T12:18:36,163 Skipping link: not a file: https://www.piwheels.org/simple/biobb-gromacs/
2022-12-21T12:18:36,164 Skipping link: not a file: https://pypi.org/simple/biobb-gromacs/
2022-12-21T12:18:36,197 Given no hashes to check 1 links for project 'biobb-gromacs': discarding no candidates
2022-12-21T12:18:36,230 Collecting biobb-gromacs==3.9.0
2022-12-21T12:18:36,235   Created temporary directory: /tmp/pip-unpack-nji0p47f
2022-12-21T12:18:36,469   Downloading biobb_gromacs-3.9.0.tar.gz (22 kB)
2022-12-21T12:18:36,618   Added biobb-gromacs==3.9.0 from https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-nx68riw_'
2022-12-21T12:18:36,622   Running setup.py (path:/tmp/pip-wheel-c_vl46yx/biobb-gromacs_1b016354c9d74a31aa6c5f0a3d78c3cd/setup.py) egg_info for package biobb-gromacs
2022-12-21T12:18:36,623   Created temporary directory: /tmp/pip-pip-egg-info-vmpmunf2
2022-12-21T12:18:36,624   Preparing metadata (setup.py): started
2022-12-21T12:18:36,626   Running command python setup.py egg_info
2022-12-21T12:18:39,126   running egg_info
2022-12-21T12:18:39,132   creating /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info
2022-12-21T12:18:39,196   writing /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/PKG-INFO
2022-12-21T12:18:39,200   writing dependency_links to /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/dependency_links.txt
2022-12-21T12:18:39,205   writing entry points to /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/entry_points.txt
2022-12-21T12:18:39,208   writing requirements to /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/requires.txt
2022-12-21T12:18:39,210   writing top-level names to /tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/top_level.txt
2022-12-21T12:18:39,213   writing manifest file '/tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/SOURCES.txt'
2022-12-21T12:18:39,417   reading manifest file '/tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/SOURCES.txt'
2022-12-21T12:18:39,426   writing manifest file '/tmp/pip-pip-egg-info-vmpmunf2/biobb_gromacs.egg-info/SOURCES.txt'
2022-12-21T12:18:39,629   Preparing metadata (setup.py): finished with status 'done'
2022-12-21T12:18:39,642   Source in /tmp/pip-wheel-c_vl46yx/biobb-gromacs_1b016354c9d74a31aa6c5f0a3d78c3cd has version 3.9.0, which satisfies requirement biobb-gromacs==3.9.0 from https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz
2022-12-21T12:18:39,644   Removed biobb-gromacs==3.9.0 from https://files.pythonhosted.org/packages/76/19/78c5eac01654d173445bcd5a5ecb97960da2fbf7f017488890aafd1dce89/biobb_gromacs-3.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-nx68riw_'
2022-12-21T12:18:39,660 Created temporary directory: /tmp/pip-unpack-wy7hwgiz
2022-12-21T12:18:39,661 Building wheels for collected packages: biobb-gromacs
2022-12-21T12:18:39,671   Created temporary directory: /tmp/pip-wheel-ewspyejd
2022-12-21T12:18:39,672   Building wheel for biobb-gromacs (setup.py): started
2022-12-21T12:18:39,674   Destination directory: /tmp/pip-wheel-ewspyejd
2022-12-21T12:18:39,674   Running command python setup.py bdist_wheel
2022-12-21T12:18:42,154   running bdist_wheel
2022-12-21T12:18:42,907   running build
2022-12-21T12:18:42,908   running build_py
2022-12-21T12:18:42,979   creating build
2022-12-21T12:18:42,980   creating build/lib
2022-12-21T12:18:42,981   creating build/lib/biobb_gromacs
2022-12-21T12:18:42,983   copying biobb_gromacs/__init__.py -> build/lib/biobb_gromacs
2022-12-21T12:18:42,989   creating build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:42,991   copying biobb_gromacs/gromacs/trjcat.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:42,996   copying biobb_gromacs/gromacs/mdrun.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,001   copying biobb_gromacs/gromacs/genrestr.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,005   copying biobb_gromacs/gromacs/__init__.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,009   copying biobb_gromacs/gromacs/grompp_mdrun.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,014   copying biobb_gromacs/gromacs/editconf.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,019   copying biobb_gromacs/gromacs/grompp.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,024   copying biobb_gromacs/gromacs/solvate.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,029   copying biobb_gromacs/gromacs/gmxselect.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,034   copying biobb_gromacs/gromacs/genion.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,039   copying biobb_gromacs/gromacs/make_ndx.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,044   copying biobb_gromacs/gromacs/pdb2gmx.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,049   copying biobb_gromacs/gromacs/common.py -> build/lib/biobb_gromacs/gromacs
2022-12-21T12:18:43,054   creating build/lib/biobb_gromacs/test
2022-12-21T12:18:43,056   copying biobb_gromacs/test/__init__.py -> build/lib/biobb_gromacs/test
2022-12-21T12:18:43,060   creating build/lib/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,061   copying biobb_gromacs/gromacs_extra/__init__.py -> build/lib/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,065   copying biobb_gromacs/gromacs_extra/append_ligand.py -> build/lib/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,069   copying biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/lib/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,152   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-12-21T12:18:43,153     setuptools.SetuptoolsDeprecationWarning,
2022-12-21T12:18:43,218   installing to build/bdist.linux-armv7l/wheel
2022-12-21T12:18:43,218   running install
2022-12-21T12:18:43,280   running install_lib
2022-12-21T12:18:43,350   creating build/bdist.linux-armv7l
2022-12-21T12:18:43,351   creating build/bdist.linux-armv7l/wheel
2022-12-21T12:18:43,354   creating build/bdist.linux-armv7l/wheel/biobb_gromacs
2022-12-21T12:18:43,356   copying build/lib/biobb_gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs
2022-12-21T12:18:43,362   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,363   copying build/lib/biobb_gromacs/gromacs/trjcat.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,368   copying build/lib/biobb_gromacs/gromacs/mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,373   copying build/lib/biobb_gromacs/gromacs/genrestr.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,377   copying build/lib/biobb_gromacs/gromacs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,381   copying build/lib/biobb_gromacs/gromacs/grompp_mdrun.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,386   copying build/lib/biobb_gromacs/gromacs/editconf.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,391   copying build/lib/biobb_gromacs/gromacs/grompp.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,396   copying build/lib/biobb_gromacs/gromacs/solvate.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,401   copying build/lib/biobb_gromacs/gromacs/gmxselect.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,405   copying build/lib/biobb_gromacs/gromacs/genion.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,410   copying build/lib/biobb_gromacs/gromacs/make_ndx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,414   copying build/lib/biobb_gromacs/gromacs/pdb2gmx.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,418   copying build/lib/biobb_gromacs/gromacs/common.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs
2022-12-21T12:18:43,424   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2022-12-21T12:18:43,426   copying build/lib/biobb_gromacs/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/test
2022-12-21T12:18:43,430   creating build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,432   copying build/lib/biobb_gromacs/gromacs_extra/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,436   copying build/lib/biobb_gromacs/gromacs_extra/append_ligand.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,441   copying build/lib/biobb_gromacs/gromacs_extra/ndx2resttop.py -> build/bdist.linux-armv7l/wheel/biobb_gromacs/gromacs_extra
2022-12-21T12:18:43,444   running install_egg_info
2022-12-21T12:18:43,607   running egg_info
2022-12-21T12:18:43,670   writing biobb_gromacs.egg-info/PKG-INFO
2022-12-21T12:18:43,674   writing dependency_links to biobb_gromacs.egg-info/dependency_links.txt
2022-12-21T12:18:43,679   writing entry points to biobb_gromacs.egg-info/entry_points.txt
2022-12-21T12:18:43,682   writing requirements to biobb_gromacs.egg-info/requires.txt
2022-12-21T12:18:43,684   writing top-level names to biobb_gromacs.egg-info/top_level.txt
2022-12-21T12:18:43,756   reading manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2022-12-21T12:18:43,767   writing manifest file 'biobb_gromacs.egg-info/SOURCES.txt'
2022-12-21T12:18:43,770   Copying biobb_gromacs.egg-info to build/bdist.linux-armv7l/wheel/biobb_gromacs-3.9.0-py3.7.egg-info
2022-12-21T12:18:43,793   running install_scripts
2022-12-21T12:18:43,994   creating build/bdist.linux-armv7l/wheel/biobb_gromacs-3.9.0.dist-info/WHEEL
2022-12-21T12:18:43,999   creating '/tmp/pip-wheel-ewspyejd/biobb_gromacs-3.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-21T12:18:44,003   adding 'biobb_gromacs/__init__.py'
2022-12-21T12:18:44,007   adding 'biobb_gromacs/gromacs/__init__.py'
2022-12-21T12:18:44,011   adding 'biobb_gromacs/gromacs/common.py'
2022-12-21T12:18:44,014   adding 'biobb_gromacs/gromacs/editconf.py'
2022-12-21T12:18:44,019   adding 'biobb_gromacs/gromacs/genion.py'
2022-12-21T12:18:44,022   adding 'biobb_gromacs/gromacs/genrestr.py'
2022-12-21T12:18:44,026   adding 'biobb_gromacs/gromacs/gmxselect.py'
2022-12-21T12:18:44,031   adding 'biobb_gromacs/gromacs/grompp.py'
2022-12-21T12:18:44,036   adding 'biobb_gromacs/gromacs/grompp_mdrun.py'
2022-12-21T12:18:44,040   adding 'biobb_gromacs/gromacs/make_ndx.py'
2022-12-21T12:18:44,044   adding 'biobb_gromacs/gromacs/mdrun.py'
2022-12-21T12:18:44,048   adding 'biobb_gromacs/gromacs/pdb2gmx.py'
2022-12-21T12:18:44,052   adding 'biobb_gromacs/gromacs/solvate.py'
2022-12-21T12:18:44,056   adding 'biobb_gromacs/gromacs/trjcat.py'
2022-12-21T12:18:44,059   adding 'biobb_gromacs/gromacs_extra/__init__.py'
2022-12-21T12:18:44,063   adding 'biobb_gromacs/gromacs_extra/append_ligand.py'
2022-12-21T12:18:44,067   adding 'biobb_gromacs/gromacs_extra/ndx2resttop.py'
2022-12-21T12:18:44,071   adding 'biobb_gromacs/test/__init__.py'
2022-12-21T12:18:44,076   adding 'biobb_gromacs-3.9.0.dist-info/METADATA'
2022-12-21T12:18:44,078   adding 'biobb_gromacs-3.9.0.dist-info/WHEEL'
2022-12-21T12:18:44,079   adding 'biobb_gromacs-3.9.0.dist-info/entry_points.txt'
2022-12-21T12:18:44,081   adding 'biobb_gromacs-3.9.0.dist-info/top_level.txt'
2022-12-21T12:18:44,083   adding 'biobb_gromacs-3.9.0.dist-info/RECORD'
2022-12-21T12:18:44,087   removing build/bdist.linux-armv7l/wheel
2022-12-21T12:18:44,351   Building wheel for biobb-gromacs (setup.py): finished with status 'done'
2022-12-21T12:18:44,359   Created wheel for biobb-gromacs: filename=biobb_gromacs-3.9.0-py3-none-any.whl size=48775 sha256=e1c466d044d7e03844c9ce91c981d715f42706f993e4307cd4a2c3fefe057200
2022-12-21T12:18:44,361   Stored in directory: /tmp/pip-ephem-wheel-cache-9y2zjhpm/wheels/ec/ce/c6/d42e98248544830646566f5423a6004d241aecf76ad27060b2
2022-12-21T12:18:44,390 Successfully built biobb-gromacs
2022-12-21T12:18:44,400 Removed build tracker: '/tmp/pip-build-tracker-nx68riw_'