2022-12-21T14:02:59,307 Created temporary directory: /tmp/pip-ephem-wheel-cache-d_dkfo4q 2022-12-21T14:02:59,311 Created temporary directory: /tmp/pip-build-tracker-ttx_jq5g 2022-12-21T14:02:59,312 Initialized build tracking at /tmp/pip-build-tracker-ttx_jq5g 2022-12-21T14:02:59,313 Created build tracker: /tmp/pip-build-tracker-ttx_jq5g 2022-12-21T14:02:59,313 Entered build tracker: /tmp/pip-build-tracker-ttx_jq5g 2022-12-21T14:02:59,314 Created temporary directory: /tmp/pip-wheel-pg443kcs 2022-12-21T14:02:59,322 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-21T14:02:59,327 Created temporary directory: /tmp/pip-ephem-wheel-cache-ygppi2uv 2022-12-21T14:02:59,384 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-21T14:02:59,391 2 location(s) to search for versions of e3fp: 2022-12-21T14:02:59,391 * https://pypi.org/simple/e3fp/ 2022-12-21T14:02:59,391 * https://www.piwheels.org/simple/e3fp/ 2022-12-21T14:02:59,392 Fetching project page and analyzing links: https://pypi.org/simple/e3fp/ 2022-12-21T14:02:59,394 Getting page https://pypi.org/simple/e3fp/ 2022-12-21T14:02:59,397 Found index url https://pypi.org/simple 2022-12-21T14:02:59,621 Fetched page https://pypi.org/simple/e3fp/ as application/vnd.pypi.simple.v1+json 2022-12-21T14:02:59,630 Found link https://files.pythonhosted.org/packages/dd/bf/b2d4f832fdfde9f72aef372ad753ce79dcdc7657b99bd74510afff3bc615/e3fp-1.0.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.0 2022-12-21T14:02:59,631 Found link https://files.pythonhosted.org/packages/b7/98/6aa089cec611de8547fe19457a2bb077a4664f35979c4288d69e4d92bb20/e3fp-1.1.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.1 2022-12-21T14:02:59,631 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/8b/c9/e7f2965d7fb610576bd32cf6f8fb144000bb55c780f84a6d987367fc2fc4/e3fp-1.2.0-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,632 Found link https://files.pythonhosted.org/packages/57/5d/6f0199e06d4051ea84e95e8a8413ae5e3f965d0252e63ecc1f3e19aabdae/e3fp-1.2.0.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.0 2022-12-21T14:02:59,633 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/4a/26/9748b546eab3281971598063b7fd2007a1a6b083dc99d1cd517c6e26b13a/e3fp-1.2.1-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,633 Found link https://files.pythonhosted.org/packages/59/bf/f1e3683fcd49448eaa02fc889b606a111ae85c537f275d634f2d0b3520e6/e3fp-1.2.1.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.1 2022-12-21T14:02:59,634 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/ef/e1/adfc6d95765004834529890fcadcb71556bd43f1fb214fadd5258cfabc70/e3fp-1.2.2-py3-none-any.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,635 Found link https://files.pythonhosted.org/packages/63/a1/8d8fe633c227a5af3f83be530db40bc06a9aa8d30a9255098cf75896d436/e3fp-1.2.2.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.2 2022-12-21T14:02:59,635 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/8b/65/9561e654bc576780d686b2803e3c31ffc4b9e0d9f0ce06911c81e6c414a5/e3fp-1.2.3-py3-none-any.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,636 Found link https://files.pythonhosted.org/packages/e2/ec/47021e1b91371275021fb72398860d6cbca7749a55b693df9a394f0c9108/e3fp-1.2.3.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.3 2022-12-21T14:02:59,637 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/d6/20/731fecd1643c379de462c15d48a0312f093ff7a4e380bf96277c75786536/e3fp-1.2.4-py3-none-any.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,637 Found link https://files.pythonhosted.org/packages/bc/1f/6c2f1944bf17e7c5803f56dcb111f26d4845d27f62494389286f9ac4e735/e3fp-1.2.4.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.4 2022-12-21T14:02:59,638 Skipping link: No binaries permitted for e3fp: https://files.pythonhosted.org/packages/8b/90/11d17079aab9ef40bae0338cf1fcda77a71bf9d98d72a14dbae3a0e732d3/e3fp-1.2.5-py3-none-any.whl (from https://pypi.org/simple/e3fp/) 2022-12-21T14:02:59,639 Found link https://files.pythonhosted.org/packages/dd/56/f050b595d6f98ff1094120ab4bf984c1c577774637bbdf11e839597fb743/e3fp-1.2.5.tar.gz (from https://pypi.org/simple/e3fp/), version: 1.2.5 2022-12-21T14:02:59,640 Fetching project page and analyzing links: https://www.piwheels.org/simple/e3fp/ 2022-12-21T14:02:59,640 Getting page https://www.piwheels.org/simple/e3fp/ 2022-12-21T14:02:59,643 Found index url https://www.piwheels.org/simple 2022-12-21T14:02:59,861 Fetched page https://www.piwheels.org/simple/e3fp/ as text/html 2022-12-21T14:02:59,876 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.4-py3-none-any.whl#sha256=52beca8d3745e542f7c4274b1628377127981fa20a1da33d8336abbf7b697a46 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,877 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.3-py3-none-any.whl#sha256=1fd27617391c265e916c0b59ac40a3c8c5c4fdb3193793eccf8f3e6ff1089770 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,877 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.2-py3-none-any.whl#sha256=1647927bb7d24526311062b613d2c06182fd6442fc0464e715e6fb8ca8250c44 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,878 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.1-cp39-cp39-linux_armv7l.whl#sha256=34410860b86721ccf4d3f291663d269dd330c0374e620ec4c5d0652c8db4966f (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,878 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.1-cp39-cp39-linux_armv6l.whl#sha256=34410860b86721ccf4d3f291663d269dd330c0374e620ec4c5d0652c8db4966f (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,879 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.1-cp37-cp37m-linux_armv7l.whl#sha256=50081d92769ab5b9df89ed7f04460be8686163cca8a024386829f48e797646c3 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,880 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.1-cp37-cp37m-linux_armv6l.whl#sha256=50081d92769ab5b9df89ed7f04460be8686163cca8a024386829f48e797646c3 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,880 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=7a322c32075d352ce16d062bb352ab88d35101874982182ceefdebffc3c44b3b (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,881 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=7a322c32075d352ce16d062bb352ab88d35101874982182ceefdebffc3c44b3b (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,881 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp34-cp34m-linux_armv7l.whl#sha256=488d17e1ec35a1bc49c00c8697c206d3d203e4bab1fef6f07afbae9c57fab8e9 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,882 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp34-cp34m-linux_armv6l.whl#sha256=488d17e1ec35a1bc49c00c8697c206d3d203e4bab1fef6f07afbae9c57fab8e9 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,882 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp37-cp37m-linux_armv7l.whl#sha256=0f93a59b8b477da1ccb69d155b01a04d7589b810809995b3df827107cf11a012 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,883 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.2.0-cp37-cp37m-linux_armv6l.whl#sha256=0f93a59b8b477da1ccb69d155b01a04d7589b810809995b3df827107cf11a012 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,884 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.1-cp35-cp35m-linux_armv6l.whl#sha256=59a22d977591885ab23129acc74031650dfe96fdccb8afbaba445515bf111483 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,884 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.1-cp35-cp35m-linux_armv7l.whl#sha256=59a22d977591885ab23129acc74031650dfe96fdccb8afbaba445515bf111483 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,885 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.1-cp34-cp34m-linux_armv6l.whl#sha256=20a0ba4d05c5cd50d26a74013a36b9ebccb62c7900c039d73567ef9ed55b148d (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,885 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.1-cp34-cp34m-linux_armv7l.whl#sha256=20a0ba4d05c5cd50d26a74013a36b9ebccb62c7900c039d73567ef9ed55b148d (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,886 Skipping link: No binaries permitted for e3fp: https://www.piwheels.org/simple/e3fp/e3fp-1.0-py3-none-any.whl#sha256=17a43b6863ba616d4e414b941b33b219bf880cdbc8f78bd2b656d396439a0286 (from https://www.piwheels.org/simple/e3fp/) 2022-12-21T14:02:59,886 Skipping link: not a file: https://www.piwheels.org/simple/e3fp/ 2022-12-21T14:02:59,887 Skipping link: not a file: https://pypi.org/simple/e3fp/ 2022-12-21T14:02:59,926 Given no hashes to check 1 links for project 'e3fp': discarding no candidates 2022-12-21T14:02:59,956 Collecting e3fp==1.2.5 2022-12-21T14:02:59,960 Created temporary directory: /tmp/pip-unpack-6duyc8fl 2022-12-21T14:03:00,465 Downloading e3fp-1.2.5.tar.gz (705 kB) 2022-12-21T14:03:00,978 Added e3fp==1.2.5 from https://files.pythonhosted.org/packages/dd/56/f050b595d6f98ff1094120ab4bf984c1c577774637bbdf11e839597fb743/e3fp-1.2.5.tar.gz to build tracker '/tmp/pip-build-tracker-ttx_jq5g' 2022-12-21T14:03:00,986 Created temporary directory: /tmp/pip-build-env-f4d4pucz 2022-12-21T14:03:00,998 Installing build dependencies: started 2022-12-21T14:03:01,000 Running command pip subprocess to install build dependencies 2022-12-21T14:03:03,697 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-21T14:03:04,489 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-21T14:03:04,542 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-21T14:03:08,372 Collecting setuptools 2022-12-21T14:03:08,643 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-21T14:03:09,282 Collecting wheel 2022-12-21T14:03:09,315 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-21T14:03:14,699 Installing collected packages: wheel, setuptools 2022-12-21T14:03:14,986 Creating /tmp/pip-build-env-f4d4pucz/overlay/bin 2022-12-21T14:03:14,992 changing mode of /tmp/pip-build-env-f4d4pucz/overlay/bin/wheel to 755 2022-12-21T14:03:19,880 Successfully installed setuptools-65.6.3 wheel-0.38.4 2022-12-21T14:03:19,910 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-21T14:03:19,910 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-21T14:03:20,337 Installing build dependencies: finished with status 'done' 2022-12-21T14:03:20,362 Getting requirements to build wheel: started 2022-12-21T14:03:20,365 Running command Getting requirements to build wheel 2022-12-21T14:03:22,317 running egg_info 2022-12-21T14:03:22,329 writing e3fp.egg-info/PKG-INFO 2022-12-21T14:03:22,334 writing dependency_links to e3fp.egg-info/dependency_links.txt 2022-12-21T14:03:22,338 writing requirements to e3fp.egg-info/requires.txt 2022-12-21T14:03:22,341 writing top-level names to e3fp.egg-info/top_level.txt 2022-12-21T14:03:22,393 reading manifest file 'e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:22,403 reading manifest template 'MANIFEST.in' 2022-12-21T14:03:22,463 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-12-21T14:03:22,463 % (opt, underscore_opt) 2022-12-21T14:03:22,463 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-21T14:03:22,465 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-12-21T14:03:22,466 adding license file 'LICENSE.txt' 2022-12-21T14:03:22,475 writing manifest file 'e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:22,676 Getting requirements to build wheel: finished with status 'done' 2022-12-21T14:03:22,695 Created temporary directory: /tmp/pip-modern-metadata-dieigao2 2022-12-21T14:03:22,701 Preparing metadata (pyproject.toml): started 2022-12-21T14:03:22,703 Running command Preparing metadata (pyproject.toml) 2022-12-21T14:03:24,526 running dist_info 2022-12-21T14:03:24,580 creating /tmp/pip-modern-metadata-dieigao2/e3fp.egg-info 2022-12-21T14:03:24,590 writing /tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/PKG-INFO 2022-12-21T14:03:24,595 writing dependency_links to /tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/dependency_links.txt 2022-12-21T14:03:24,600 writing requirements to /tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/requires.txt 2022-12-21T14:03:24,602 writing top-level names to /tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/top_level.txt 2022-12-21T14:03:24,605 writing manifest file '/tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:24,649 reading manifest file '/tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:24,656 reading manifest template 'MANIFEST.in' 2022-12-21T14:03:24,714 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-12-21T14:03:24,715 % (opt, underscore_opt) 2022-12-21T14:03:24,715 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-21T14:03:24,716 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-12-21T14:03:24,717 adding license file 'LICENSE.txt' 2022-12-21T14:03:24,725 writing manifest file '/tmp/pip-modern-metadata-dieigao2/e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:24,727 creating '/tmp/pip-modern-metadata-dieigao2/e3fp-1.2.5.dist-info' 2022-12-21T14:03:25,100 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-21T14:03:25,115 Source in /tmp/pip-wheel-pg443kcs/e3fp_43e6e87210924173b81aa69bf413352f has version 1.2.5, which satisfies requirement e3fp==1.2.5 from https://files.pythonhosted.org/packages/dd/56/f050b595d6f98ff1094120ab4bf984c1c577774637bbdf11e839597fb743/e3fp-1.2.5.tar.gz 2022-12-21T14:03:25,117 Removed e3fp==1.2.5 from https://files.pythonhosted.org/packages/dd/56/f050b595d6f98ff1094120ab4bf984c1c577774637bbdf11e839597fb743/e3fp-1.2.5.tar.gz from build tracker '/tmp/pip-build-tracker-ttx_jq5g' 2022-12-21T14:03:25,127 Created temporary directory: /tmp/pip-unpack-r8r67239 2022-12-21T14:03:25,129 Building wheels for collected packages: e3fp 2022-12-21T14:03:25,138 Created temporary directory: /tmp/pip-wheel-fwjyn262 2022-12-21T14:03:25,138 Destination directory: /tmp/pip-wheel-fwjyn262 2022-12-21T14:03:25,145 Building wheel for e3fp (pyproject.toml): started 2022-12-21T14:03:25,147 Running command Building wheel for e3fp (pyproject.toml) 2022-12-21T14:03:26,997 running bdist_wheel 2022-12-21T14:03:27,072 running build 2022-12-21T14:03:27,073 running build_py 2022-12-21T14:03:27,094 creating build 2022-12-21T14:03:27,095 creating build/lib 2022-12-21T14:03:27,096 creating build/lib/e3fp 2022-12-21T14:03:27,099 copying e3fp/__init__.py -> build/lib/e3fp 2022-12-21T14:03:27,102 copying e3fp/util.py -> build/lib/e3fp 2022-12-21T14:03:27,106 copying e3fp/pipeline.py -> build/lib/e3fp 2022-12-21T14:03:27,111 creating build/lib/e3fp/config 2022-12-21T14:03:27,112 copying e3fp/config/__init__.py -> build/lib/e3fp/config 2022-12-21T14:03:27,116 copying e3fp/config/params.py -> build/lib/e3fp/config 2022-12-21T14:03:27,121 creating build/lib/e3fp/conformer 2022-12-21T14:03:27,123 copying e3fp/conformer/__init__.py -> build/lib/e3fp/conformer 2022-12-21T14:03:27,126 copying e3fp/conformer/util.py -> build/lib/e3fp/conformer 2022-12-21T14:03:27,130 copying e3fp/conformer/generate.py -> build/lib/e3fp/conformer 2022-12-21T14:03:27,135 copying e3fp/conformer/protonation.py -> build/lib/e3fp/conformer 2022-12-21T14:03:27,139 copying e3fp/conformer/generator.py -> build/lib/e3fp/conformer 2022-12-21T14:03:27,145 creating build/lib/e3fp/fingerprint 2022-12-21T14:03:27,147 copying e3fp/fingerprint/__init__.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,150 copying e3fp/fingerprint/array_ops.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,155 copying e3fp/fingerprint/util.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,158 copying e3fp/fingerprint/fprinter.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,164 copying e3fp/fingerprint/generate.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,169 copying e3fp/fingerprint/db.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,175 copying e3fp/fingerprint/structs.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,179 copying e3fp/fingerprint/fprint.py -> build/lib/e3fp/fingerprint 2022-12-21T14:03:27,188 creating build/lib/e3fp/test 2022-12-21T14:03:27,190 copying e3fp/test/__init__.py -> build/lib/e3fp/test 2022-12-21T14:03:27,193 copying e3fp/test/test_fingerprint.py -> build/lib/e3fp/test 2022-12-21T14:03:27,197 copying e3fp/test/test_fingerprinting.py -> build/lib/e3fp/test 2022-12-21T14:03:27,203 copying e3fp/test/test_metrics.py -> build/lib/e3fp/test 2022-12-21T14:03:27,207 copying e3fp/test/test_dependencies.py -> build/lib/e3fp/test 2022-12-21T14:03:27,210 copying e3fp/test/test_util.py -> build/lib/e3fp/test 2022-12-21T14:03:27,214 copying e3fp/test/test_struct.py -> build/lib/e3fp/test 2022-12-21T14:03:27,218 copying e3fp/test/test_conformer.py -> build/lib/e3fp/test 2022-12-21T14:03:27,221 copying e3fp/test/test_config.py -> build/lib/e3fp/test 2022-12-21T14:03:27,225 copying e3fp/test/test_fprint_db.py -> build/lib/e3fp/test 2022-12-21T14:03:27,229 running egg_info 2022-12-21T14:03:27,273 writing e3fp.egg-info/PKG-INFO 2022-12-21T14:03:27,276 writing dependency_links to e3fp.egg-info/dependency_links.txt 2022-12-21T14:03:27,280 writing requirements to e3fp.egg-info/requires.txt 2022-12-21T14:03:27,282 writing top-level names to e3fp.egg-info/top_level.txt 2022-12-21T14:03:27,303 reading manifest file 'e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:27,309 reading manifest template 'MANIFEST.in' 2022-12-21T14:03:27,364 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2022-12-21T14:03:27,364 % (opt, underscore_opt) 2022-12-21T14:03:27,365 warning: no previously-included files matching '__pycache__' found under directory '*' 2022-12-21T14:03:27,366 warning: no previously-included files matching '*.py[co]' found under directory '*' 2022-12-21T14:03:27,366 adding license file 'LICENSE.txt' 2022-12-21T14:03:27,376 writing manifest file 'e3fp.egg-info/SOURCES.txt' 2022-12-21T14:03:27,390 copying e3fp/config/defaults.cfg -> build/lib/e3fp/config 2022-12-21T14:03:27,394 creating build/lib/e3fp/fingerprint/metrics 2022-12-21T14:03:27,396 copying e3fp/fingerprint/metrics/__init__.py -> build/lib/e3fp/fingerprint/metrics 2022-12-21T14:03:27,400 copying e3fp/fingerprint/metrics/array_metrics.py -> build/lib/e3fp/fingerprint/metrics 2022-12-21T14:03:27,405 copying e3fp/fingerprint/metrics/fprint_metrics.py -> build/lib/e3fp/fingerprint/metrics 2022-12-21T14:03:27,409 creating build/lib/e3fp/test/data 2022-12-21T14:03:27,411 copying e3fp/test/data/caffeine_planar.sdf.bz2 -> build/lib/e3fp/test/data 2022-12-21T14:03:27,415 copying e3fp/test/data/ritalin_nonplanar.sdf -> build/lib/e3fp/test/data 2022-12-21T14:03:27,420 copying e3fp/test/data/ritalin_nonplanar.sdf.bz2 -> build/lib/e3fp/test/data 2022-12-21T14:03:27,424 copying e3fp/test/data/stereo1.sdf.bz2 -> build/lib/e3fp/test/data 2022-12-21T14:03:27,428 copying e3fp/test/data/stereo2.sdf.bz2 -> build/lib/e3fp/test/data 2022-12-21T14:03:27,432 creating build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,433 copying e3fp/test/data/rand_sdf_files/CHEMBL116226.sdf.bz2 -> build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,442 copying e3fp/test/data/rand_sdf_files/CHEMBL197946.sdf.bz2 -> build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,456 copying e3fp/test/data/rand_sdf_files/CHEMBL2114064.sdf.bz2 -> build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,461 copying e3fp/test/data/rand_sdf_files/CHEMBL282186.sdf.bz2 -> build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,476 copying e3fp/test/data/rand_sdf_files/CHEMBL501745.sdf.bz2 -> build/lib/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,524 installing to build/bdist.linux-armv7l/wheel 2022-12-21T14:03:27,525 running install 2022-12-21T14:03:27,590 running install_lib 2022-12-21T14:03:27,605 creating build/bdist.linux-armv7l 2022-12-21T14:03:27,607 creating build/bdist.linux-armv7l/wheel 2022-12-21T14:03:27,611 creating build/bdist.linux-armv7l/wheel/e3fp 2022-12-21T14:03:27,614 copying build/lib/e3fp/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp 2022-12-21T14:03:27,620 creating build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,622 copying build/lib/e3fp/fingerprint/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,626 copying build/lib/e3fp/fingerprint/array_ops.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,632 copying build/lib/e3fp/fingerprint/util.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,636 copying build/lib/e3fp/fingerprint/fprinter.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,643 copying build/lib/e3fp/fingerprint/generate.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,649 copying build/lib/e3fp/fingerprint/db.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,657 creating build/bdist.linux-armv7l/wheel/e3fp/fingerprint/metrics 2022-12-21T14:03:27,659 copying build/lib/e3fp/fingerprint/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint/metrics 2022-12-21T14:03:27,664 copying build/lib/e3fp/fingerprint/metrics/array_metrics.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint/metrics 2022-12-21T14:03:27,670 copying build/lib/e3fp/fingerprint/metrics/fprint_metrics.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint/metrics 2022-12-21T14:03:27,675 copying build/lib/e3fp/fingerprint/structs.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,680 copying build/lib/e3fp/fingerprint/fprint.py -> build/bdist.linux-armv7l/wheel/e3fp/fingerprint 2022-12-21T14:03:27,688 copying build/lib/e3fp/util.py -> build/bdist.linux-armv7l/wheel/e3fp 2022-12-21T14:03:27,692 copying build/lib/e3fp/pipeline.py -> build/bdist.linux-armv7l/wheel/e3fp 2022-12-21T14:03:27,697 creating build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,699 copying build/lib/e3fp/conformer/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,702 copying build/lib/e3fp/conformer/util.py -> build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,707 copying build/lib/e3fp/conformer/generate.py -> build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,712 copying build/lib/e3fp/conformer/protonation.py -> build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,717 copying build/lib/e3fp/conformer/generator.py -> build/bdist.linux-armv7l/wheel/e3fp/conformer 2022-12-21T14:03:27,724 creating build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,725 copying build/lib/e3fp/test/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,729 copying build/lib/e3fp/test/test_fingerprint.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,733 copying build/lib/e3fp/test/test_fingerprinting.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,740 copying build/lib/e3fp/test/test_metrics.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,745 copying build/lib/e3fp/test/test_dependencies.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,750 copying build/lib/e3fp/test/test_util.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,754 copying build/lib/e3fp/test/test_struct.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,759 copying build/lib/e3fp/test/test_conformer.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,764 copying build/lib/e3fp/test/test_config.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,768 copying build/lib/e3fp/test/test_fprint_db.py -> build/bdist.linux-armv7l/wheel/e3fp/test 2022-12-21T14:03:27,775 creating build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,778 copying build/lib/e3fp/test/data/caffeine_planar.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,782 copying build/lib/e3fp/test/data/ritalin_nonplanar.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,786 copying build/lib/e3fp/test/data/stereo2.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,791 creating build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,794 copying build/lib/e3fp/test/data/rand_sdf_files/CHEMBL116226.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,803 copying build/lib/e3fp/test/data/rand_sdf_files/CHEMBL2114064.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,809 copying build/lib/e3fp/test/data/rand_sdf_files/CHEMBL282186.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,824 copying build/lib/e3fp/test/data/rand_sdf_files/CHEMBL197946.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,838 copying build/lib/e3fp/test/data/rand_sdf_files/CHEMBL501745.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data/rand_sdf_files 2022-12-21T14:03:27,849 copying build/lib/e3fp/test/data/stereo1.sdf.bz2 -> build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,852 copying build/lib/e3fp/test/data/ritalin_nonplanar.sdf -> build/bdist.linux-armv7l/wheel/e3fp/test/data 2022-12-21T14:03:27,857 creating build/bdist.linux-armv7l/wheel/e3fp/config 2022-12-21T14:03:27,859 copying build/lib/e3fp/config/__init__.py -> build/bdist.linux-armv7l/wheel/e3fp/config 2022-12-21T14:03:27,862 copying build/lib/e3fp/config/params.py -> build/bdist.linux-armv7l/wheel/e3fp/config 2022-12-21T14:03:27,867 copying build/lib/e3fp/config/defaults.cfg -> build/bdist.linux-armv7l/wheel/e3fp/config 2022-12-21T14:03:27,870 running install_egg_info 2022-12-21T14:03:27,894 Copying e3fp.egg-info to build/bdist.linux-armv7l/wheel/e3fp-1.2.5-py3.7.egg-info 2022-12-21T14:03:27,916 running install_scripts 2022-12-21T14:03:28,077 creating build/bdist.linux-armv7l/wheel/e3fp-1.2.5.dist-info/WHEEL 2022-12-21T14:03:28,082 creating '/tmp/pip-wheel-fwjyn262/.tmp-7hw6_gc2/e3fp-1.2.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-21T14:03:28,087 adding 'e3fp/__init__.py' 2022-12-21T14:03:28,090 adding 'e3fp/pipeline.py' 2022-12-21T14:03:28,093 adding 'e3fp/util.py' 2022-12-21T14:03:28,096 adding 'e3fp/config/__init__.py' 2022-12-21T14:03:28,099 adding 'e3fp/config/defaults.cfg' 2022-12-21T14:03:28,102 adding 'e3fp/config/params.py' 2022-12-21T14:03:28,106 adding 'e3fp/conformer/__init__.py' 2022-12-21T14:03:28,111 adding 'e3fp/conformer/generate.py' 2022-12-21T14:03:28,116 adding 'e3fp/conformer/generator.py' 2022-12-21T14:03:28,120 adding 'e3fp/conformer/protonation.py' 2022-12-21T14:03:28,125 adding 'e3fp/conformer/util.py' 2022-12-21T14:03:28,129 adding 'e3fp/fingerprint/__init__.py' 2022-12-21T14:03:28,132 adding 'e3fp/fingerprint/array_ops.py' 2022-12-21T14:03:28,140 adding 'e3fp/fingerprint/db.py' 2022-12-21T14:03:28,153 adding 'e3fp/fingerprint/fprint.py' 2022-12-21T14:03:28,165 adding 'e3fp/fingerprint/fprinter.py' 2022-12-21T14:03:28,172 adding 'e3fp/fingerprint/generate.py' 2022-12-21T14:03:28,177 adding 'e3fp/fingerprint/structs.py' 2022-12-21T14:03:28,179 adding 'e3fp/fingerprint/util.py' 2022-12-21T14:03:28,184 adding 'e3fp/fingerprint/metrics/__init__.py' 2022-12-21T14:03:28,187 adding 'e3fp/fingerprint/metrics/array_metrics.py' 2022-12-21T14:03:28,190 adding 'e3fp/fingerprint/metrics/fprint_metrics.py' 2022-12-21T14:03:28,194 adding 'e3fp/test/__init__.py' 2022-12-21T14:03:28,196 adding 'e3fp/test/test_config.py' 2022-12-21T14:03:28,199 adding 'e3fp/test/test_conformer.py' 2022-12-21T14:03:28,202 adding 'e3fp/test/test_dependencies.py' 2022-12-21T14:03:28,205 adding 'e3fp/test/test_fingerprint.py' 2022-12-21T14:03:28,212 adding 'e3fp/test/test_fingerprinting.py' 2022-12-21T14:03:28,217 adding 'e3fp/test/test_fprint_db.py' 2022-12-21T14:03:28,220 adding 'e3fp/test/test_metrics.py' 2022-12-21T14:03:28,225 adding 'e3fp/test/test_struct.py' 2022-12-21T14:03:28,227 adding 'e3fp/test/test_util.py' 2022-12-21T14:03:28,231 adding 'e3fp/test/data/caffeine_planar.sdf.bz2' 2022-12-21T14:03:28,234 adding 'e3fp/test/data/ritalin_nonplanar.sdf' 2022-12-21T14:03:28,237 adding 'e3fp/test/data/ritalin_nonplanar.sdf.bz2' 2022-12-21T14:03:28,240 adding 'e3fp/test/data/stereo1.sdf.bz2' 2022-12-21T14:03:28,242 adding 'e3fp/test/data/stereo2.sdf.bz2' 2022-12-21T14:03:28,267 adding 'e3fp/test/data/rand_sdf_files/CHEMBL116226.sdf.bz2' 2022-12-21T14:03:28,326 adding 'e3fp/test/data/rand_sdf_files/CHEMBL197946.sdf.bz2' 2022-12-21T14:03:28,338 adding 'e3fp/test/data/rand_sdf_files/CHEMBL2114064.sdf.bz2' 2022-12-21T14:03:28,399 adding 'e3fp/test/data/rand_sdf_files/CHEMBL282186.sdf.bz2' 2022-12-21T14:03:28,443 adding 'e3fp/test/data/rand_sdf_files/CHEMBL501745.sdf.bz2' 2022-12-21T14:03:28,452 adding 'e3fp-1.2.5.dist-info/LICENSE.txt' 2022-12-21T14:03:28,455 adding 'e3fp-1.2.5.dist-info/METADATA' 2022-12-21T14:03:28,457 adding 'e3fp-1.2.5.dist-info/WHEEL' 2022-12-21T14:03:28,459 adding 'e3fp-1.2.5.dist-info/top_level.txt' 2022-12-21T14:03:28,462 adding 'e3fp-1.2.5.dist-info/RECORD' 2022-12-21T14:03:28,486 removing build/bdist.linux-armv7l/wheel 2022-12-21T14:03:28,516 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'e3fp.fingerprint.metrics' as data is deprecated, please list it in `packages`. 2022-12-21T14:03:28,517 !! 2022-12-21T14:03:28,518 ############################ 2022-12-21T14:03:28,519 # Package would be ignored # 2022-12-21T14:03:28,519 ############################ 2022-12-21T14:03:28,519 Python recognizes 'e3fp.fingerprint.metrics' as an importable package, 2022-12-21T14:03:28,520 but it is not listed in the `packages` configuration of setuptools. 2022-12-21T14:03:28,521 'e3fp.fingerprint.metrics' has been automatically added to the distribution only 2022-12-21T14:03:28,521 because it may contain data files, but this behavior is likely to change 2022-12-21T14:03:28,522 in future versions of setuptools (and therefore is considered deprecated). 2022-12-21T14:03:28,523 Please make sure that 'e3fp.fingerprint.metrics' is included as a package by using 2022-12-21T14:03:28,523 the `packages` configuration field or the proper discovery methods 2022-12-21T14:03:28,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-21T14:03:28,524 instead of `find_packages(...)`/`find:`). 2022-12-21T14:03:28,525 You can read more about "package discovery" and "data files" on setuptools 2022-12-21T14:03:28,526 documentation page. 2022-12-21T14:03:28,527 !! 2022-12-21T14:03:28,528 check.warn(importable) 2022-12-21T14:03:28,528 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'e3fp.test.data' as data is deprecated, please list it in `packages`. 2022-12-21T14:03:28,529 !! 2022-12-21T14:03:28,530 ############################ 2022-12-21T14:03:28,531 # Package would be ignored # 2022-12-21T14:03:28,531 ############################ 2022-12-21T14:03:28,531 Python recognizes 'e3fp.test.data' as an importable package, 2022-12-21T14:03:28,532 but it is not listed in the `packages` configuration of setuptools. 2022-12-21T14:03:28,533 'e3fp.test.data' has been automatically added to the distribution only 2022-12-21T14:03:28,534 because it may contain data files, but this behavior is likely to change 2022-12-21T14:03:28,534 in future versions of setuptools (and therefore is considered deprecated). 2022-12-21T14:03:28,535 Please make sure that 'e3fp.test.data' is included as a package by using 2022-12-21T14:03:28,535 the `packages` configuration field or the proper discovery methods 2022-12-21T14:03:28,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-21T14:03:28,536 instead of `find_packages(...)`/`find:`). 2022-12-21T14:03:28,537 You can read more about "package discovery" and "data files" on setuptools 2022-12-21T14:03:28,538 documentation page. 2022-12-21T14:03:28,539 !! 2022-12-21T14:03:28,540 check.warn(importable) 2022-12-21T14:03:28,540 /tmp/pip-build-env-f4d4pucz/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'e3fp.test.data.rand_sdf_files' as data is deprecated, please list it in `packages`. 2022-12-21T14:03:28,540 !! 2022-12-21T14:03:28,542 ############################ 2022-12-21T14:03:28,542 # Package would be ignored # 2022-12-21T14:03:28,543 ############################ 2022-12-21T14:03:28,543 Python recognizes 'e3fp.test.data.rand_sdf_files' as an importable package, 2022-12-21T14:03:28,543 but it is not listed in the `packages` configuration of setuptools. 2022-12-21T14:03:28,544 'e3fp.test.data.rand_sdf_files' has been automatically added to the distribution only 2022-12-21T14:03:28,545 because it may contain data files, but this behavior is likely to change 2022-12-21T14:03:28,545 in future versions of setuptools (and therefore is considered deprecated). 2022-12-21T14:03:28,546 Please make sure that 'e3fp.test.data.rand_sdf_files' is included as a package by using 2022-12-21T14:03:28,546 the `packages` configuration field or the proper discovery methods 2022-12-21T14:03:28,547 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-21T14:03:28,547 instead of `find_packages(...)`/`find:`). 2022-12-21T14:03:28,548 You can read more about "package discovery" and "data files" on setuptools 2022-12-21T14:03:28,548 documentation page. 2022-12-21T14:03:28,549 !! 2022-12-21T14:03:28,550 check.warn(importable) 2022-12-21T14:03:28,744 Building wheel for e3fp (pyproject.toml): finished with status 'done' 2022-12-21T14:03:28,795 Created wheel for e3fp: filename=e3fp-1.2.5-py3-none-any.whl size=713683 sha256=a43ac0d43e11daabe2c8ccc14daf483a84d9b3c9430f01fdb6976d0a0f0d8567 2022-12-21T14:03:28,797 Stored in directory: /tmp/pip-ephem-wheel-cache-ygppi2uv/wheels/07/8a/af/590665216b0f698d7a8b91fa781f13047e8b2ced733f35cb11 2022-12-21T14:03:28,827 Successfully built e3fp 2022-12-21T14:03:28,893 Removed build tracker: '/tmp/pip-build-tracker-ttx_jq5g'