2022-12-22T12:33:42,935 Created temporary directory: /tmp/pip-ephem-wheel-cache-3drfsuvk 2022-12-22T12:33:42,940 Created temporary directory: /tmp/pip-build-tracker-pzt4njop 2022-12-22T12:33:42,941 Initialized build tracking at /tmp/pip-build-tracker-pzt4njop 2022-12-22T12:33:42,941 Created build tracker: /tmp/pip-build-tracker-pzt4njop 2022-12-22T12:33:42,941 Entered build tracker: /tmp/pip-build-tracker-pzt4njop 2022-12-22T12:33:42,942 Created temporary directory: /tmp/pip-wheel-04i1v8wf 2022-12-22T12:33:42,950 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-22T12:33:42,955 Created temporary directory: /tmp/pip-ephem-wheel-cache-tkgoi5rz 2022-12-22T12:33:43,005 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-22T12:33:43,013 2 location(s) to search for versions of vermouth: 2022-12-22T12:33:43,013 * https://pypi.org/simple/vermouth/ 2022-12-22T12:33:43,013 * https://www.piwheels.org/simple/vermouth/ 2022-12-22T12:33:43,014 Fetching project page and analyzing links: https://pypi.org/simple/vermouth/ 2022-12-22T12:33:43,015 Getting page https://pypi.org/simple/vermouth/ 2022-12-22T12:33:43,018 Found index url https://pypi.org/simple 2022-12-22T12:33:43,246 Fetched page https://pypi.org/simple/vermouth/ as application/vnd.pypi.simple.v1+json 2022-12-22T12:33:43,259 Found link https://files.pythonhosted.org/packages/c6/b1/274b76764e2ebe0b190708befe8a588d5b645f096609f68723139c80fdee/vermouth-0.1.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.1.0 2022-12-22T12:33:43,260 Found link https://files.pythonhosted.org/packages/ee/d9/cc8ed35bf50924fa9bf4d450c620f6f0f45254b00b30c2fe1a7f76b00368/vermouth-0.2.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.2.0 2022-12-22T12:33:43,261 Found link https://files.pythonhosted.org/packages/c7/6b/bf90515318a6a1c4e2994db43469e52e638d16400068dfcb7d478e9b7c1a/vermouth-0.3.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.0 2022-12-22T12:33:43,262 Found link https://files.pythonhosted.org/packages/b2/d5/07402db0608b5e2bdfbf3f8858ccfd2f454f382f50e4a6940b763426cbea/vermouth-0.3.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.3.1 2022-12-22T12:33:43,262 Found link https://files.pythonhosted.org/packages/bf/6e/b4e991b3fe595aca6a31cc0449c66b240f50edbf12ebfe80f0d0e592cd5e/vermouth-0.4.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.0 2022-12-22T12:33:43,263 Found link https://files.pythonhosted.org/packages/2c/72/107e8be40ef06f07a809105debbfb1278aceaee8c363189b9c09fe44f8a2/vermouth-0.4.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.4.1 2022-12-22T12:33:43,264 Found link https://files.pythonhosted.org/packages/d2/86/6cc920072226d0a6e5c0e0a28f85414722b023c66c3cccaaf3492ded2cba/vermouth-0.5.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.5.0 2022-12-22T12:33:43,264 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/ee/ff/589eae88b25a30d0b086231b459f2927ede30c9ef57e92b84a4d479775f2/vermouth-0.6.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,265 Found link https://files.pythonhosted.org/packages/de/df/6ec1631c808589b3eb5dfbb8e22df2803fde0750c30e6305148f14d72256/vermouth-0.6.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.0 2022-12-22T12:33:43,266 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/de/1f/a29254c72edc7bc749c16f3bf621baa85c6883567469ebcc068b6771abb4/vermouth-0.6.1.dev1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,266 Found link https://files.pythonhosted.org/packages/f5/75/24a94d58fdd58770f2df5325d29034dbd0a072a0bd99905507a297dc3796/vermouth-0.6.1.dev1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.6.1.dev1 2022-12-22T12:33:43,267 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b8/87/07db5eba7bf97abf229dbf76ff759a877057bf94cffff0ded5909422d14a/vermouth-0.7.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,267 Found link https://files.pythonhosted.org/packages/94/1f/e6e57cdc03b6afb830671707bffbfccefd383b3efc9dbe086c1d9037c34d/vermouth-0.7.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.0 2022-12-22T12:33:43,268 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/18/d3/2998a0d56963a85358f7fe385adb3eb9d660c1ce771057008afd5cfd6901/vermouth-0.7.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,269 Found link https://files.pythonhosted.org/packages/43/0b/d6cd081c035a321c1149cd8625fad98d969d6413327bbde731f4d30c5e4f/vermouth-0.7.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.1 2022-12-22T12:33:43,269 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/3a/cb877fe0c178bce0e16ddda0c34fd57902248b07938e3cb72bc1c78bc0d1/vermouth-0.7.2-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,270 Found link https://files.pythonhosted.org/packages/56/a1/1e5a5d54a4d1aed5d50645e5adc4ad026636c1e837d56adce10a54463ad6/vermouth-0.7.2.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.2 2022-12-22T12:33:43,271 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/b2/20/f41a35c1b011d730614adab6923c713a58b7731b28b6488e8190a009aec2/vermouth-0.7.3-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,271 Found link https://files.pythonhosted.org/packages/7d/78/12e0752ceab663c708253421692fbc1ee3b1184e1918e2fbc9b06f4f9097/vermouth-0.7.3.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.7.3 2022-12-22T12:33:43,272 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/52/34/e7b82dc063e327fc8f47ab01d2b27363ebd3778e8f45d90ec8ad38486480/vermouth-0.8.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,272 Found link https://files.pythonhosted.org/packages/1a/49/4e20bde1dbaab255a469c7944c1e6a767e7449e1dd5b20e3f2524083d6eb/vermouth-0.8.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.8.1 2022-12-22T12:33:43,273 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/7e/a1/549f337abec9f3a02d249895a849d3d500008e1d39beb38582c97654e949/vermouth-0.9.0-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,274 Found link https://files.pythonhosted.org/packages/e2/aa/77a78de364e05a2096416338e09f0e5c371e90c3d434d8fa5ba4982e3175/vermouth-0.9.0.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.0 2022-12-22T12:33:43,274 Skipping link: No binaries permitted for vermouth: https://files.pythonhosted.org/packages/57/ac/ab6dc7c67e51a2a64dd830a992d3e8e23e785532a87c4e19527cd548bb97/vermouth-0.9.1-py2.py3-none-any.whl (from https://pypi.org/simple/vermouth/) 2022-12-22T12:33:43,275 Found link https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz (from https://pypi.org/simple/vermouth/), version: 0.9.1 2022-12-22T12:33:43,276 Fetching project page and analyzing links: https://www.piwheels.org/simple/vermouth/ 2022-12-22T12:33:43,276 Getting page https://www.piwheels.org/simple/vermouth/ 2022-12-22T12:33:43,279 Found index url https://www.piwheels.org/simple 2022-12-22T12:33:43,506 Fetched page https://www.piwheels.org/simple/vermouth/ as text/html 2022-12-22T12:33:43,518 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.9.0-py2.py3-none-any.whl#sha256=af7e389a682ab361277dba8792edfca3ef6ca68d5884be63696c233885c5d31c (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,519 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.8.1-py2.py3-none-any.whl#sha256=f0c9d27ed8796568f7aa9dd2294d10d07fa0f27764ebc2d85ce2715ec2c6a5e5 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,519 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.3-py2.py3-none-any.whl#sha256=a151dce5369142ce6d19a3988e0a1746288f8f2fae07ba59c5e1547df88ad1e3 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,520 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.2-py2.py3-none-any.whl#sha256=229f973ded59ef7883ba4f6fbfa96540cdf40b1b961b12efdbe7d5cb81fac6a1 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,520 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.1-py2.py3-none-any.whl#sha256=fc70883831d576793246091cafc7b008f187bc4faf6a8e560307ab7481e832f2 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,521 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.7.0-py2.py3-none-any.whl#sha256=5fca42314e68189e5e41f8e4b1722a1b93e3522c211a4504fa1e329991804768 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,521 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.1.dev1-py2.py3-none-any.whl#sha256=40b89874779133125b2ceda6a869dfaee2f00ebbeb4eab86903eb35cf0f51102 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,522 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.6.0-py2.py3-none-any.whl#sha256=eacf3828c494728c7a206f78e8b3845eed24ca2f25b522c618260811f03231fe (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,523 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.5.0-py2.py3-none-any.whl#sha256=d2dcb086df80653b9602029af7363d8ba15a3660a9eed6f9d5c62f3156f231d2 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,523 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.1-py2.py3-none-any.whl#sha256=7b29e1249b460cbf99396d25d6b7898d394a4f354f06f4574240f9226aaf70de (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,524 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.4.0-py2.py3-none-any.whl#sha256=1e8e41f2ade8de1b613de4a5fba5a29828bbd23b449c1c6fc503ab0dd52aa61f (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,524 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.1-py2.py3-none-any.whl#sha256=3431b025e519118e06c5ccb19b7a28cbf5f40fc6029496521569f2647a0fab3a (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,525 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.3.0-py2.py3-none-any.whl#sha256=164322a4f376c6a503756677793912d937dfb6330f3973c9dc8fdb89eafa44e3 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,525 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.2.0-py2.py3-none-any.whl#sha256=bc59509223e3450150b291f42032d3cea874b0544820fe778507ccca510f03b5 (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,526 Skipping link: No binaries permitted for vermouth: https://www.piwheels.org/simple/vermouth/vermouth-0.1.0-py2.py3-none-any.whl#sha256=28068403a9546c028aca0d749c0401d00d6aa1ec66f1cf8bb91f8e293294cc2e (from https://www.piwheels.org/simple/vermouth/) 2022-12-22T12:33:43,526 Skipping link: not a file: https://www.piwheels.org/simple/vermouth/ 2022-12-22T12:33:43,527 Skipping link: not a file: https://pypi.org/simple/vermouth/ 2022-12-22T12:33:43,569 Given no hashes to check 1 links for project 'vermouth': discarding no candidates 2022-12-22T12:33:43,599 Collecting vermouth==0.9.1 2022-12-22T12:33:43,603 Created temporary directory: /tmp/pip-unpack-8q9rg2bo 2022-12-22T12:33:44,282 Downloading vermouth-0.9.1.tar.gz (2.4 MB) 2022-12-22T12:33:48,897 Added vermouth==0.9.1 from https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz to build tracker '/tmp/pip-build-tracker-pzt4njop' 2022-12-22T12:33:48,907 Created temporary directory: /tmp/pip-build-env-n7mzsamm 2022-12-22T12:33:48,920 Installing build dependencies: started 2022-12-22T12:33:48,922 Running command pip subprocess to install build dependencies 2022-12-22T12:33:51,597 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-22T12:33:52,410 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-22T12:33:52,463 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-22T12:33:53,306 Collecting wheel 2022-12-22T12:33:53,342 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-22T12:33:56,965 Collecting setuptools>=30.3.0 2022-12-22T12:33:57,219 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-22T12:33:58,850 Collecting pbr 2022-12-22T12:33:58,896 Using cached https://www.piwheels.org/simple/pbr/pbr-5.11.0-py2.py3-none-any.whl (112 kB) 2022-12-22T12:34:04,458 Installing collected packages: wheel, setuptools, pbr 2022-12-22T12:34:04,745 Creating /tmp/pip-build-env-n7mzsamm/overlay/bin 2022-12-22T12:34:04,750 changing mode of /tmp/pip-build-env-n7mzsamm/overlay/bin/wheel to 755 2022-12-22T12:34:10,248 changing mode of /tmp/pip-build-env-n7mzsamm/overlay/bin/pbr to 755 2022-12-22T12:34:10,284 Successfully installed pbr-5.11.0 setuptools-65.6.3 wheel-0.38.4 2022-12-22T12:34:10,316 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-22T12:34:10,317 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-22T12:34:10,763 Installing build dependencies: finished with status 'done' 2022-12-22T12:34:10,790 Getting requirements to build wheel: started 2022-12-22T12:34:10,793 Running command Getting requirements to build wheel 2022-12-22T12:34:12,757 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-22T12:34:12,758 % (opt, underscore_opt) 2022-12-22T12:34:12,759 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-22T12:34:12,759 % (opt, underscore_opt) 2022-12-22T12:34:12,760 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-22T12:34:12,760 % (opt, underscore_opt) 2022-12-22T12:34:12,760 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-22T12:34:12,761 % (opt, underscore_opt) 2022-12-22T12:34:12,947 Getting requirements to build wheel: finished with status 'done' 2022-12-22T12:34:12,974 Created temporary directory: /tmp/pip-modern-metadata-8r9v2ck_ 2022-12-22T12:34:12,981 Preparing metadata (pyproject.toml): started 2022-12-22T12:34:12,983 Running command Preparing metadata (pyproject.toml) 2022-12-22T12:34:15,229 running dist_info 2022-12-22T12:34:15,235 creating /tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info 2022-12-22T12:34:15,298 writing /tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/PKG-INFO 2022-12-22T12:34:15,306 writing dependency_links to /tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/dependency_links.txt 2022-12-22T12:34:15,311 writing requirements to /tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/requires.txt 2022-12-22T12:34:15,313 writing top-level names to /tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/top_level.txt 2022-12-22T12:34:15,316 [pbr] Processing SOURCES.txt 2022-12-22T12:34:15,317 writing manifest file '/tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/SOURCES.txt' 2022-12-22T12:34:15,866 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-12-22T12:34:15,867 EasyInstallDeprecationWarning, 2022-12-22T12:34:15,867 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-22T12:34:15,868 setuptools.SetuptoolsDeprecationWarning, 2022-12-22T12:34:15,868 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-22T12:34:15,868 % (opt, underscore_opt) 2022-12-22T12:34:15,869 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-22T12:34:15,869 % (opt, underscore_opt) 2022-12-22T12:34:15,869 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-22T12:34:15,870 % (opt, underscore_opt) 2022-12-22T12:34:15,870 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-22T12:34:15,870 % (opt, underscore_opt) 2022-12-22T12:34:15,870 warning: no files found matching 'AUTHORS' 2022-12-22T12:34:15,871 warning: no files found matching 'ChangeLog' 2022-12-22T12:34:15,871 warning: no previously-included files found matching '.gitignore' 2022-12-22T12:34:15,873 warning: no previously-included files found matching '.gitreview' 2022-12-22T12:34:15,877 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2022-12-22T12:34:16,090 adding license file 'LICENSE' 2022-12-22T12:34:16,145 writing manifest file '/tmp/pip-modern-metadata-8r9v2ck_/vermouth.egg-info/SOURCES.txt' 2022-12-22T12:34:16,150 creating '/tmp/pip-modern-metadata-8r9v2ck_/vermouth-0.9.1.dist-info' 2022-12-22T12:34:16,259 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-12-22T12:34:16,575 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-22T12:34:16,590 Source in /tmp/pip-wheel-04i1v8wf/vermouth_83fc2fa385a54998aed55e233b8582a5 has version 0.9.1, which satisfies requirement vermouth==0.9.1 from https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz 2022-12-22T12:34:16,592 Removed vermouth==0.9.1 from https://files.pythonhosted.org/packages/59/0d/adbfe0a5c7343fe5a7341c4bfa08216edc273c379e2ce8751a8ff8e223a7/vermouth-0.9.1.tar.gz from build tracker '/tmp/pip-build-tracker-pzt4njop' 2022-12-22T12:34:16,602 Created temporary directory: /tmp/pip-unpack-so_du2rm 2022-12-22T12:34:16,603 Building wheels for collected packages: vermouth 2022-12-22T12:34:16,612 Created temporary directory: /tmp/pip-wheel-hoqku1vs 2022-12-22T12:34:16,612 Destination directory: /tmp/pip-wheel-hoqku1vs 2022-12-22T12:34:16,617 Building wheel for vermouth (pyproject.toml): started 2022-12-22T12:34:16,619 Running command Building wheel for vermouth (pyproject.toml) 2022-12-22T12:34:18,877 running bdist_wheel 2022-12-22T12:34:18,897 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/easy_install.py:147: EasyInstallDeprecationWarning: easy_install command is deprecated. Use build and pip and other standards-based tools. 2022-12-22T12:34:18,898 EasyInstallDeprecationWarning, 2022-12-22T12:34:18,898 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'description-content-type' will not be supported in future versions. Please use the underscore name 'description_content_type' instead 2022-12-22T12:34:18,899 % (opt, underscore_opt) 2022-12-22T12:34:18,899 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'setup-requires' will not be supported in future versions. Please use the underscore name 'setup_requires' instead 2022-12-22T12:34:18,899 % (opt, underscore_opt) 2022-12-22T12:34:18,900 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'install-requires' will not be supported in future versions. Please use the underscore name 'install_requires' instead 2022-12-22T12:34:18,900 % (opt, underscore_opt) 2022-12-22T12:34:18,900 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/dist.py:773: UserWarning: Usage of dash-separated 'zip-safe' will not be supported in future versions. Please use the underscore name 'zip_safe' instead 2022-12-22T12:34:18,901 % (opt, underscore_opt) 2022-12-22T12:34:18,901 The [wheel] section is deprecated. Use [bdist_wheel] instead. 2022-12-22T12:34:18,935 running build 2022-12-22T12:34:18,936 running build_py 2022-12-22T12:34:18,956 creating build 2022-12-22T12:34:18,957 creating build/lib 2022-12-22T12:34:18,959 creating build/lib/vermouth 2022-12-22T12:34:18,961 copying vermouth/parser_utils.py -> build/lib/vermouth 2022-12-22T12:34:18,966 copying vermouth/map_parser.py -> build/lib/vermouth 2022-12-22T12:34:18,973 copying vermouth/__init__.py -> build/lib/vermouth 2022-12-22T12:34:18,976 copying vermouth/ismags.py -> build/lib/vermouth 2022-12-22T12:34:18,982 copying vermouth/utils.py -> build/lib/vermouth 2022-12-22T12:34:18,987 copying vermouth/log_helpers.py -> build/lib/vermouth 2022-12-22T12:34:18,991 copying vermouth/forcefield.py -> build/lib/vermouth 2022-12-22T12:34:18,996 copying vermouth/citation_parser.py -> build/lib/vermouth 2022-12-22T12:34:19,000 copying vermouth/selectors.py -> build/lib/vermouth 2022-12-22T12:34:19,004 copying vermouth/graph_utils.py -> build/lib/vermouth 2022-12-22T12:34:19,009 copying vermouth/edge_tuning.py -> build/lib/vermouth 2022-12-22T12:34:19,013 copying vermouth/truncating_formatter.py -> build/lib/vermouth 2022-12-22T12:34:19,018 copying vermouth/file_writer.py -> build/lib/vermouth 2022-12-22T12:34:19,022 copying vermouth/ffinput.py -> build/lib/vermouth 2022-12-22T12:34:19,028 copying vermouth/system.py -> build/lib/vermouth 2022-12-22T12:34:19,032 copying vermouth/map_input.py -> build/lib/vermouth 2022-12-22T12:34:19,037 copying vermouth/geometry.py -> build/lib/vermouth 2022-12-22T12:34:19,040 copying vermouth/molecule.py -> build/lib/vermouth 2022-12-22T12:34:19,052 creating build/lib/vermouth/tests 2022-12-22T12:34:19,055 copying vermouth/tests/test_tune_cystein_bridges.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,060 copying vermouth/tests/test_selectors.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,065 copying vermouth/tests/test_set_molecule_meta.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,070 copying vermouth/tests/test_ffinput.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,076 copying vermouth/tests/test_utils.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,081 copying vermouth/tests/test_average_beads.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,086 copying vermouth/tests/test_map_parser.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,092 copying vermouth/tests/test_ptm_detection.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,096 copying vermouth/tests/__init__.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,100 copying vermouth/tests/test_repair_graph.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,105 copying vermouth/tests/test_map_input.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,111 copying vermouth/tests/test_do_mapping.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,115 copying vermouth/tests/helper_functions.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,119 copying vermouth/tests/datafiles.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,123 copying vermouth/tests/test_grappa.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,127 copying vermouth/tests/test_add_molecule_edges.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,131 copying vermouth/tests/test_itp_files.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,136 copying vermouth/tests/test_edge_tuning.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,141 copying vermouth/tests/test_logging.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,145 copying vermouth/tests/test_graph_utils.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,150 copying vermouth/tests/test_geometry.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,155 copying vermouth/tests/test_make_bonds.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,159 copying vermouth/tests/test_sort_molecule_atoms.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,163 copying vermouth/tests/test_mapping_integrative.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,167 copying vermouth/tests/test_dssp.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,172 copying vermouth/tests/molecule_strategies.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,176 copying vermouth/tests/test_ismags.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,181 copying vermouth/tests/test_annotate_mut_mod.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,186 copying vermouth/tests/test_forcefield.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,190 copying vermouth/tests/test_ff_files.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,197 copying vermouth/tests/test_apply_rubber_band.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,202 copying vermouth/tests/test_molecule.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,210 copying vermouth/tests/test_section_parser.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,213 copying vermouth/tests/test_go_vs_includes.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,217 copying vermouth/tests/test_links.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,222 copying vermouth/tests/test_name_moltype.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,226 copying vermouth/tests/test_version.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,230 copying vermouth/tests/test_file_writer.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,234 copying vermouth/tests/test_native_forcefield.py -> build/lib/vermouth/tests 2022-12-22T12:34:19,239 creating build/lib/vermouth/gmx 2022-12-22T12:34:19,241 copying vermouth/gmx/itp_read.py -> build/lib/vermouth/gmx 2022-12-22T12:34:19,247 copying vermouth/gmx/__init__.py -> build/lib/vermouth/gmx 2022-12-22T12:34:19,251 copying vermouth/gmx/itp.py -> build/lib/vermouth/gmx 2022-12-22T12:34:19,255 copying vermouth/gmx/gro.py -> build/lib/vermouth/gmx 2022-12-22T12:34:19,260 copying vermouth/gmx/rtp.py -> build/lib/vermouth/gmx 2022-12-22T12:34:19,266 creating build/lib/vermouth/dssp 2022-12-22T12:34:19,268 copying vermouth/dssp/dssp.py -> build/lib/vermouth/dssp 2022-12-22T12:34:19,273 copying vermouth/dssp/__init__.py -> build/lib/vermouth/dssp 2022-12-22T12:34:19,280 creating build/lib/vermouth/processors 2022-12-22T12:34:19,282 copying vermouth/processors/gro_reader.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,286 copying vermouth/processors/name_moltype.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,289 copying vermouth/processors/rename_modified_residues.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,293 copying vermouth/processors/add_molecule_edges.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,297 copying vermouth/processors/annotate_mut_mod.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,301 copying vermouth/processors/processor.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,306 copying vermouth/processors/go_vs_includes.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,311 copying vermouth/processors/tune_cystein_bridges.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,315 copying vermouth/processors/__init__.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,319 copying vermouth/processors/set_molecule_meta.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,323 copying vermouth/processors/sort_molecule_atoms.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,327 copying vermouth/processors/apply_rubber_band.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,333 copying vermouth/processors/do_mapping.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,340 copying vermouth/processors/merge_all_molecules.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,344 copying vermouth/processors/repair_graph.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,350 copying vermouth/processors/pdb_reader.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,354 copying vermouth/processors/attach_mass.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,358 copying vermouth/processors/merge_chains.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,363 copying vermouth/processors/make_bonds.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,368 copying vermouth/processors/quote.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,371 copying vermouth/processors/canonicalize_modifications.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,376 copying vermouth/processors/locate_charge_dummies.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,380 copying vermouth/processors/average_beads.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,384 copying vermouth/processors/apply_posres.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,388 copying vermouth/processors/do_links.py -> build/lib/vermouth/processors 2022-12-22T12:34:19,394 creating build/lib/vermouth/pdb 2022-12-22T12:34:19,396 copying vermouth/pdb/pdb.py -> build/lib/vermouth/pdb 2022-12-22T12:34:19,401 copying vermouth/pdb/__init__.py -> build/lib/vermouth/pdb 2022-12-22T12:34:19,405 creating build/lib/vermouth/tests/integration_tests 2022-12-22T12:34:19,407 copying vermouth/tests/integration_tests/__init__.py -> build/lib/vermouth/tests/integration_tests 2022-12-22T12:34:19,411 copying vermouth/tests/integration_tests/test_integration.py -> build/lib/vermouth/tests/integration_tests 2022-12-22T12:34:19,414 running egg_info 2022-12-22T12:34:19,486 writing vermouth.egg-info/PKG-INFO 2022-12-22T12:34:19,492 writing dependency_links to vermouth.egg-info/dependency_links.txt 2022-12-22T12:34:19,496 writing requirements to vermouth.egg-info/requires.txt 2022-12-22T12:34:19,499 writing top-level names to vermouth.egg-info/top_level.txt 2022-12-22T12:34:19,501 [pbr] Reusing existing SOURCES.txt 2022-12-22T12:34:19,667 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,668 !! 2022-12-22T12:34:19,669 ############################ 2022-12-22T12:34:19,669 # Package would be ignored # 2022-12-22T12:34:19,669 ############################ 2022-12-22T12:34:19,670 Python recognizes 'vermouth.data' as an importable package, 2022-12-22T12:34:19,670 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,670 'vermouth.data' has been automatically added to the distribution only 2022-12-22T12:34:19,671 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,671 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,672 Please make sure that 'vermouth.data' is included as a package by using 2022-12-22T12:34:19,672 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,672 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,673 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,673 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,673 documentation page. 2022-12-22T12:34:19,674 !! 2022-12-22T12:34:19,675 check.warn(importable) 2022-12-22T12:34:19,675 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.amber' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,675 !! 2022-12-22T12:34:19,676 ############################ 2022-12-22T12:34:19,677 # Package would be ignored # 2022-12-22T12:34:19,677 ############################ 2022-12-22T12:34:19,677 Python recognizes 'vermouth.data.force_fields.amber' as an importable package, 2022-12-22T12:34:19,677 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,678 'vermouth.data.force_fields.amber' has been automatically added to the distribution only 2022-12-22T12:34:19,678 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,679 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,679 Please make sure that 'vermouth.data.force_fields.amber' is included as a package by using 2022-12-22T12:34:19,680 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,680 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,680 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,681 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,681 documentation page. 2022-12-22T12:34:19,682 !! 2022-12-22T12:34:19,682 check.warn(importable) 2022-12-22T12:34:19,683 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.charmm' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,683 !! 2022-12-22T12:34:19,684 ############################ 2022-12-22T12:34:19,684 # Package would be ignored # 2022-12-22T12:34:19,684 ############################ 2022-12-22T12:34:19,685 Python recognizes 'vermouth.data.force_fields.charmm' as an importable package, 2022-12-22T12:34:19,685 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,686 'vermouth.data.force_fields.charmm' has been automatically added to the distribution only 2022-12-22T12:34:19,686 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,686 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,687 Please make sure that 'vermouth.data.force_fields.charmm' is included as a package by using 2022-12-22T12:34:19,687 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,688 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,688 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,689 documentation page. 2022-12-22T12:34:19,689 !! 2022-12-22T12:34:19,690 check.warn(importable) 2022-12-22T12:34:19,690 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn21' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,691 !! 2022-12-22T12:34:19,691 ############################ 2022-12-22T12:34:19,692 # Package would be ignored # 2022-12-22T12:34:19,692 ############################ 2022-12-22T12:34:19,692 Python recognizes 'vermouth.data.force_fields.elnedyn21' as an importable package, 2022-12-22T12:34:19,693 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,693 'vermouth.data.force_fields.elnedyn21' has been automatically added to the distribution only 2022-12-22T12:34:19,693 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,694 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,694 Please make sure that 'vermouth.data.force_fields.elnedyn21' is included as a package by using 2022-12-22T12:34:19,695 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,695 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,695 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,696 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,696 documentation page. 2022-12-22T12:34:19,697 !! 2022-12-22T12:34:19,697 check.warn(importable) 2022-12-22T12:34:19,698 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn22' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,698 !! 2022-12-22T12:34:19,699 ############################ 2022-12-22T12:34:19,699 # Package would be ignored # 2022-12-22T12:34:19,699 ############################ 2022-12-22T12:34:19,700 Python recognizes 'vermouth.data.force_fields.elnedyn22' as an importable package, 2022-12-22T12:34:19,700 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,701 'vermouth.data.force_fields.elnedyn22' has been automatically added to the distribution only 2022-12-22T12:34:19,701 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,701 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,702 Please make sure that 'vermouth.data.force_fields.elnedyn22' is included as a package by using 2022-12-22T12:34:19,702 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,703 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,703 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,703 documentation page. 2022-12-22T12:34:19,704 !! 2022-12-22T12:34:19,705 check.warn(importable) 2022-12-22T12:34:19,705 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.elnedyn22p' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,705 !! 2022-12-22T12:34:19,706 ############################ 2022-12-22T12:34:19,706 # Package would be ignored # 2022-12-22T12:34:19,707 ############################ 2022-12-22T12:34:19,707 Python recognizes 'vermouth.data.force_fields.elnedyn22p' as an importable package, 2022-12-22T12:34:19,707 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,708 'vermouth.data.force_fields.elnedyn22p' has been automatically added to the distribution only 2022-12-22T12:34:19,708 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,709 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,709 Please make sure that 'vermouth.data.force_fields.elnedyn22p' is included as a package by using 2022-12-22T12:34:19,709 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,710 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,710 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,711 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,711 documentation page. 2022-12-22T12:34:19,712 !! 2022-12-22T12:34:19,712 check.warn(importable) 2022-12-22T12:34:19,713 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.gromos' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,713 !! 2022-12-22T12:34:19,714 ############################ 2022-12-22T12:34:19,714 # Package would be ignored # 2022-12-22T12:34:19,714 ############################ 2022-12-22T12:34:19,714 Python recognizes 'vermouth.data.force_fields.gromos' as an importable package, 2022-12-22T12:34:19,715 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,715 'vermouth.data.force_fields.gromos' has been automatically added to the distribution only 2022-12-22T12:34:19,716 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,716 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,716 Please make sure that 'vermouth.data.force_fields.gromos' is included as a package by using 2022-12-22T12:34:19,717 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,717 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,717 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,718 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,718 documentation page. 2022-12-22T12:34:19,719 !! 2022-12-22T12:34:19,720 check.warn(importable) 2022-12-22T12:34:19,720 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini22' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,720 !! 2022-12-22T12:34:19,721 ############################ 2022-12-22T12:34:19,722 # Package would be ignored # 2022-12-22T12:34:19,722 ############################ 2022-12-22T12:34:19,722 Python recognizes 'vermouth.data.force_fields.martini22' as an importable package, 2022-12-22T12:34:19,722 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,723 'vermouth.data.force_fields.martini22' has been automatically added to the distribution only 2022-12-22T12:34:19,723 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,724 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,724 Please make sure that 'vermouth.data.force_fields.martini22' is included as a package by using 2022-12-22T12:34:19,724 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,725 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,725 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,726 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,726 documentation page. 2022-12-22T12:34:19,727 !! 2022-12-22T12:34:19,727 check.warn(importable) 2022-12-22T12:34:19,727 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini22p' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,728 !! 2022-12-22T12:34:19,729 ############################ 2022-12-22T12:34:19,729 # Package would be ignored # 2022-12-22T12:34:19,729 ############################ 2022-12-22T12:34:19,730 Python recognizes 'vermouth.data.force_fields.martini22p' as an importable package, 2022-12-22T12:34:19,730 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,730 'vermouth.data.force_fields.martini22p' has been automatically added to the distribution only 2022-12-22T12:34:19,731 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,731 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,732 Please make sure that 'vermouth.data.force_fields.martini22p' is included as a package by using 2022-12-22T12:34:19,732 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,732 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,732 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,733 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,733 documentation page. 2022-12-22T12:34:19,734 !! 2022-12-22T12:34:19,735 check.warn(importable) 2022-12-22T12:34:19,735 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini3001' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,735 !! 2022-12-22T12:34:19,736 ############################ 2022-12-22T12:34:19,736 # Package would be ignored # 2022-12-22T12:34:19,737 ############################ 2022-12-22T12:34:19,737 Python recognizes 'vermouth.data.force_fields.martini3001' as an importable package, 2022-12-22T12:34:19,737 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,738 'vermouth.data.force_fields.martini3001' has been automatically added to the distribution only 2022-12-22T12:34:19,738 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,738 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,739 Please make sure that 'vermouth.data.force_fields.martini3001' is included as a package by using 2022-12-22T12:34:19,739 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,739 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,740 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,740 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,741 documentation page. 2022-12-22T12:34:19,741 !! 2022-12-22T12:34:19,742 check.warn(importable) 2022-12-22T12:34:19,742 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini30b32' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,743 !! 2022-12-22T12:34:19,743 ############################ 2022-12-22T12:34:19,744 # Package would be ignored # 2022-12-22T12:34:19,744 ############################ 2022-12-22T12:34:19,744 Python recognizes 'vermouth.data.force_fields.martini30b32' as an importable package, 2022-12-22T12:34:19,745 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,745 'vermouth.data.force_fields.martini30b32' has been automatically added to the distribution only 2022-12-22T12:34:19,745 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,746 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,746 Please make sure that 'vermouth.data.force_fields.martini30b32' is included as a package by using 2022-12-22T12:34:19,747 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,747 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,747 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,748 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,748 documentation page. 2022-12-22T12:34:19,749 !! 2022-12-22T12:34:19,749 check.warn(importable) 2022-12-22T12:34:19,750 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.force_fields.martini30dev' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,750 !! 2022-12-22T12:34:19,751 ############################ 2022-12-22T12:34:19,751 # Package would be ignored # 2022-12-22T12:34:19,751 ############################ 2022-12-22T12:34:19,752 Python recognizes 'vermouth.data.force_fields.martini30dev' as an importable package, 2022-12-22T12:34:19,752 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,752 'vermouth.data.force_fields.martini30dev' has been automatically added to the distribution only 2022-12-22T12:34:19,753 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,753 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,754 Please make sure that 'vermouth.data.force_fields.martini30dev' is included as a package by using 2022-12-22T12:34:19,754 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,754 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,754 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,755 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,755 documentation page. 2022-12-22T12:34:19,756 !! 2022-12-22T12:34:19,757 check.warn(importable) 2022-12-22T12:34:19,757 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,757 !! 2022-12-22T12:34:19,758 ############################ 2022-12-22T12:34:19,758 # Package would be ignored # 2022-12-22T12:34:19,759 ############################ 2022-12-22T12:34:19,759 Python recognizes 'vermouth.data.mappings' as an importable package, 2022-12-22T12:34:19,759 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,760 'vermouth.data.mappings' has been automatically added to the distribution only 2022-12-22T12:34:19,760 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,760 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,761 Please make sure that 'vermouth.data.mappings' is included as a package by using 2022-12-22T12:34:19,761 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,762 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,762 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,762 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,763 documentation page. 2022-12-22T12:34:19,763 !! 2022-12-22T12:34:19,764 check.warn(importable) 2022-12-22T12:34:19,764 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,765 !! 2022-12-22T12:34:19,765 ############################ 2022-12-22T12:34:19,766 # Package would be ignored # 2022-12-22T12:34:19,766 ############################ 2022-12-22T12:34:19,766 Python recognizes 'vermouth.data.mappings.elnedyn' as an importable package, 2022-12-22T12:34:19,767 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,767 'vermouth.data.mappings.elnedyn' has been automatically added to the distribution only 2022-12-22T12:34:19,767 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,768 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,768 Please make sure that 'vermouth.data.mappings.elnedyn' is included as a package by using 2022-12-22T12:34:19,769 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,769 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,769 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,770 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,770 documentation page. 2022-12-22T12:34:19,771 !! 2022-12-22T12:34:19,772 check.warn(importable) 2022-12-22T12:34:19,772 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn.elnedyn22p' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,772 !! 2022-12-22T12:34:19,773 ############################ 2022-12-22T12:34:19,773 # Package would be ignored # 2022-12-22T12:34:19,773 ############################ 2022-12-22T12:34:19,774 Python recognizes 'vermouth.data.mappings.elnedyn.elnedyn22p' as an importable package, 2022-12-22T12:34:19,774 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,775 'vermouth.data.mappings.elnedyn.elnedyn22p' has been automatically added to the distribution only 2022-12-22T12:34:19,775 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,775 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,776 Please make sure that 'vermouth.data.mappings.elnedyn.elnedyn22p' is included as a package by using 2022-12-22T12:34:19,776 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,777 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,777 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,777 documentation page. 2022-12-22T12:34:19,778 !! 2022-12-22T12:34:19,779 check.warn(importable) 2022-12-22T12:34:19,779 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.elnedyn21' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,780 !! 2022-12-22T12:34:19,780 ############################ 2022-12-22T12:34:19,781 # Package would be ignored # 2022-12-22T12:34:19,781 ############################ 2022-12-22T12:34:19,781 Python recognizes 'vermouth.data.mappings.elnedyn21' as an importable package, 2022-12-22T12:34:19,781 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,782 'vermouth.data.mappings.elnedyn21' has been automatically added to the distribution only 2022-12-22T12:34:19,782 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,783 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,783 Please make sure that 'vermouth.data.mappings.elnedyn21' is included as a package by using 2022-12-22T12:34:19,783 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,784 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,784 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,785 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,785 documentation page. 2022-12-22T12:34:19,786 !! 2022-12-22T12:34:19,786 check.warn(importable) 2022-12-22T12:34:19,787 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.martini3001' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,787 !! 2022-12-22T12:34:19,788 ############################ 2022-12-22T12:34:19,788 # Package would be ignored # 2022-12-22T12:34:19,788 ############################ 2022-12-22T12:34:19,789 Python recognizes 'vermouth.data.mappings.martini3001' as an importable package, 2022-12-22T12:34:19,789 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,790 'vermouth.data.mappings.martini3001' has been automatically added to the distribution only 2022-12-22T12:34:19,790 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,790 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,791 Please make sure that 'vermouth.data.mappings.martini3001' is included as a package by using 2022-12-22T12:34:19,791 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,791 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,792 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,792 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,792 documentation page. 2022-12-22T12:34:19,793 !! 2022-12-22T12:34:19,794 check.warn(importable) 2022-12-22T12:34:19,794 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.data.mappings.martini30b32' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,794 !! 2022-12-22T12:34:19,795 ############################ 2022-12-22T12:34:19,795 # Package would be ignored # 2022-12-22T12:34:19,796 ############################ 2022-12-22T12:34:19,796 Python recognizes 'vermouth.data.mappings.martini30b32' as an importable package, 2022-12-22T12:34:19,796 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,797 'vermouth.data.mappings.martini30b32' has been automatically added to the distribution only 2022-12-22T12:34:19,797 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,797 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,798 Please make sure that 'vermouth.data.mappings.martini30b32' is included as a package by using 2022-12-22T12:34:19,798 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,799 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,799 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,799 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,800 documentation page. 2022-12-22T12:34:19,801 !! 2022-12-22T12:34:19,801 check.warn(importable) 2022-12-22T12:34:19,801 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.graphing' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,802 !! 2022-12-22T12:34:19,803 ############################ 2022-12-22T12:34:19,803 # Package would be ignored # 2022-12-22T12:34:19,803 ############################ 2022-12-22T12:34:19,803 Python recognizes 'vermouth.graphing' as an importable package, 2022-12-22T12:34:19,804 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,804 'vermouth.graphing' has been automatically added to the distribution only 2022-12-22T12:34:19,805 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,805 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,805 Please make sure that 'vermouth.graphing' is included as a package by using 2022-12-22T12:34:19,806 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,806 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,806 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,807 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,807 documentation page. 2022-12-22T12:34:19,808 !! 2022-12-22T12:34:19,809 check.warn(importable) 2022-12-22T12:34:19,809 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,809 !! 2022-12-22T12:34:19,810 ############################ 2022-12-22T12:34:19,810 # Package would be ignored # 2022-12-22T12:34:19,811 ############################ 2022-12-22T12:34:19,811 Python recognizes 'vermouth.tests.data' as an importable package, 2022-12-22T12:34:19,811 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,812 'vermouth.tests.data' has been automatically added to the distribution only 2022-12-22T12:34:19,812 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,812 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,813 Please make sure that 'vermouth.tests.data' is included as a package by using 2022-12-22T12:34:19,813 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,813 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,814 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,814 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,814 documentation page. 2022-12-22T12:34:19,815 !! 2022-12-22T12:34:19,816 check.warn(importable) 2022-12-22T12:34:19,816 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.force_fields' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,816 !! 2022-12-22T12:34:19,817 ############################ 2022-12-22T12:34:19,818 # Package would be ignored # 2022-12-22T12:34:19,818 ############################ 2022-12-22T12:34:19,818 Python recognizes 'vermouth.tests.data.force_fields' as an importable package, 2022-12-22T12:34:19,818 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,819 'vermouth.tests.data.force_fields' has been automatically added to the distribution only 2022-12-22T12:34:19,819 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,820 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,820 Please make sure that 'vermouth.tests.data.force_fields' is included as a package by using 2022-12-22T12:34:19,820 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,821 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,821 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,822 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,822 documentation page. 2022-12-22T12:34:19,823 !! 2022-12-22T12:34:19,823 check.warn(importable) 2022-12-22T12:34:19,824 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.force_fields.pepplane' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,824 !! 2022-12-22T12:34:19,825 ############################ 2022-12-22T12:34:19,825 # Package would be ignored # 2022-12-22T12:34:19,825 ############################ 2022-12-22T12:34:19,826 Python recognizes 'vermouth.tests.data.force_fields.pepplane' as an importable package, 2022-12-22T12:34:19,826 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,826 'vermouth.tests.data.force_fields.pepplane' has been automatically added to the distribution only 2022-12-22T12:34:19,827 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,827 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,828 Please make sure that 'vermouth.tests.data.force_fields.pepplane' is included as a package by using 2022-12-22T12:34:19,828 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,828 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,829 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,829 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,829 documentation page. 2022-12-22T12:34:19,830 !! 2022-12-22T12:34:19,831 check.warn(importable) 2022-12-22T12:34:19,831 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.integration_tests' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:19,831 !! 2022-12-22T12:34:19,832 ############################ 2022-12-22T12:34:19,832 # Package would be ignored # 2022-12-22T12:34:19,833 ############################ 2022-12-22T12:34:19,833 Python recognizes 'vermouth.tests.data.integration_tests' as an importable package, 2022-12-22T12:34:19,833 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:19,834 'vermouth.tests.data.integration_tests' has been automatically added to the distribution only 2022-12-22T12:34:19,834 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:19,834 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:19,835 Please make sure that 'vermouth.tests.data.integration_tests' is included as a package by using 2022-12-22T12:34:19,835 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:19,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:19,836 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:19,836 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:19,837 documentation page. 2022-12-22T12:34:19,838 !! 2022-12-22T12:34:19,838 check.warn(importable) 2022-12-22T12:34:20,263 creating build/lib/vermouth/data 2022-12-22T12:34:20,264 copying vermouth/data/quotes.txt -> build/lib/vermouth/data 2022-12-22T12:34:20,269 creating build/lib/vermouth/data/force_fields 2022-12-22T12:34:20,270 creating build/lib/vermouth/data/force_fields/amber 2022-12-22T12:34:20,273 copying vermouth/data/force_fields/amber/aminoacids.rtp -> build/lib/vermouth/data/force_fields/amber 2022-12-22T12:34:20,279 copying vermouth/data/force_fields/amber/modifications.ff -> build/lib/vermouth/data/force_fields/amber 2022-12-22T12:34:20,283 creating build/lib/vermouth/data/force_fields/charmm 2022-12-22T12:34:20,285 copying vermouth/data/force_fields/charmm/aminoacids.rtp -> build/lib/vermouth/data/force_fields/charmm 2022-12-22T12:34:20,291 copying vermouth/data/force_fields/charmm/modifications.ff -> build/lib/vermouth/data/force_fields/charmm 2022-12-22T12:34:20,295 copying vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/lib/vermouth/data/force_fields/charmm 2022-12-22T12:34:20,396 creating build/lib/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:20,397 copying vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:20,403 copying vermouth/data/force_fields/elnedyn21/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:20,407 copying vermouth/data/force_fields/elnedyn21/general.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:20,411 copying vermouth/data/force_fields/elnedyn21/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:20,415 creating build/lib/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:20,417 copying vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:20,423 copying vermouth/data/force_fields/elnedyn22/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:20,427 copying vermouth/data/force_fields/elnedyn22/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:20,431 copying vermouth/data/force_fields/elnedyn22/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:20,435 creating build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:20,436 copying vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:20,442 copying vermouth/data/force_fields/elnedyn22p/citations.bib -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:20,446 copying vermouth/data/force_fields/elnedyn22p/general.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:20,450 copying vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/lib/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:20,454 creating build/lib/vermouth/data/force_fields/gromos 2022-12-22T12:34:20,456 copying vermouth/data/force_fields/gromos/aminoacids.rtp -> build/lib/vermouth/data/force_fields/gromos 2022-12-22T12:34:20,464 copying vermouth/data/force_fields/gromos/cofactors.ff -> build/lib/vermouth/data/force_fields/gromos 2022-12-22T12:34:20,469 copying vermouth/data/force_fields/gromos/modifications.ff -> build/lib/vermouth/data/force_fields/gromos 2022-12-22T12:34:20,474 creating build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,476 copying vermouth/data/force_fields/martini22/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,483 copying vermouth/data/force_fields/martini22/citations.bib -> build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,488 copying vermouth/data/force_fields/martini22/general.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,492 copying vermouth/data/force_fields/martini22/modifications.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,497 copying vermouth/data/force_fields/martini22/nucleotides.ff -> build/lib/vermouth/data/force_fields/martini22 2022-12-22T12:34:20,502 creating build/lib/vermouth/data/force_fields/martini22p 2022-12-22T12:34:20,504 copying vermouth/data/force_fields/martini22p/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-22T12:34:20,511 copying vermouth/data/force_fields/martini22p/citations.bib -> build/lib/vermouth/data/force_fields/martini22p 2022-12-22T12:34:20,516 copying vermouth/data/force_fields/martini22p/general.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-22T12:34:20,520 copying vermouth/data/force_fields/martini22p/modifications.ff -> build/lib/vermouth/data/force_fields/martini22p 2022-12-22T12:34:20,524 creating build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,526 copying vermouth/data/force_fields/martini3001/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,532 copying vermouth/data/force_fields/martini3001/citations.bib -> build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,536 copying vermouth/data/force_fields/martini3001/general.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,540 copying vermouth/data/force_fields/martini3001/modifications.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,544 copying vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/lib/vermouth/data/force_fields/martini3001 2022-12-22T12:34:20,550 creating build/lib/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:20,551 copying vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:20,557 copying vermouth/data/force_fields/martini30b32/citations.bib -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:20,561 copying vermouth/data/force_fields/martini30b32/modifications.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:20,565 copying vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/lib/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:20,569 creating build/lib/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:20,571 copying vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:20,577 copying vermouth/data/force_fields/martini30dev/citations.bib -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:20,581 copying vermouth/data/force_fields/martini30dev/modifications.ff -> build/lib/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:20,586 creating build/lib/vermouth/data/mappings 2022-12-22T12:34:20,589 copying vermouth/data/mappings/ala.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,593 copying vermouth/data/mappings/ala.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,597 copying vermouth/data/mappings/arg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,601 copying vermouth/data/mappings/arg.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,605 copying vermouth/data/mappings/arg.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,610 copying vermouth/data/mappings/asn.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,614 copying vermouth/data/mappings/asn.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,618 copying vermouth/data/mappings/asn.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,622 copying vermouth/data/mappings/asp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,626 copying vermouth/data/mappings/asp.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,632 copying vermouth/data/mappings/asp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,637 copying vermouth/data/mappings/asp0.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,641 copying vermouth/data/mappings/chol.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,645 copying vermouth/data/mappings/cys.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,649 copying vermouth/data/mappings/cys.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,653 copying vermouth/data/mappings/dmpc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,657 copying vermouth/data/mappings/dopc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,661 copying vermouth/data/mappings/dppc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,666 copying vermouth/data/mappings/dppg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,670 copying vermouth/data/mappings/fmn.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,675 copying vermouth/data/mappings/gln.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,679 copying vermouth/data/mappings/gln.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,684 copying vermouth/data/mappings/gln.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,688 copying vermouth/data/mappings/glu.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,692 copying vermouth/data/mappings/glu.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,696 copying vermouth/data/mappings/glu.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,700 copying vermouth/data/mappings/glu0.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,703 copying vermouth/data/mappings/gly.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,707 copying vermouth/data/mappings/gly.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,712 copying vermouth/data/mappings/his.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,715 copying vermouth/data/mappings/his.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,719 copying vermouth/data/mappings/hsd.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,723 copying vermouth/data/mappings/hse.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,727 copying vermouth/data/mappings/hsp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,731 copying vermouth/data/mappings/ile.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,735 copying vermouth/data/mappings/ile.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,739 copying vermouth/data/mappings/leu.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,743 copying vermouth/data/mappings/leu.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,746 copying vermouth/data/mappings/lys.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,750 copying vermouth/data/mappings/lys.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,754 copying vermouth/data/mappings/lys.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,759 copying vermouth/data/mappings/met.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,762 copying vermouth/data/mappings/met.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,766 copying vermouth/data/mappings/modifications.gromos.mapping -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,770 copying vermouth/data/mappings/modifications.mapping -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,774 copying vermouth/data/mappings/nad.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,778 copying vermouth/data/mappings/phe.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,782 copying vermouth/data/mappings/phe.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,786 copying vermouth/data/mappings/popc.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,791 copying vermouth/data/mappings/pope.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,795 copying vermouth/data/mappings/popg.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,800 copying vermouth/data/mappings/pops.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,804 copying vermouth/data/mappings/pro.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,808 copying vermouth/data/mappings/pro.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,812 copying vermouth/data/mappings/ser.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,816 copying vermouth/data/mappings/ser.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,820 copying vermouth/data/mappings/ser.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,824 copying vermouth/data/mappings/thr.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,828 copying vermouth/data/mappings/thr.charmm36.martini22p.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,831 copying vermouth/data/mappings/thr.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,835 copying vermouth/data/mappings/tpp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,840 copying vermouth/data/mappings/trp.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,844 copying vermouth/data/mappings/trp.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,848 copying vermouth/data/mappings/tyr.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,852 copying vermouth/data/mappings/tyr.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,856 copying vermouth/data/mappings/val.charmm36.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,860 copying vermouth/data/mappings/val.gromos.map -> build/lib/vermouth/data/mappings 2022-12-22T12:34:20,864 creating build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,865 copying vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,870 copying vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,874 copying vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,878 copying vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,882 copying vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,886 copying vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,890 copying vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,894 copying vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,899 copying vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,903 copying vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,907 copying vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,911 copying vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,915 copying vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,919 copying vermouth/data/mappings/elnedyn/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,923 copying vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,927 copying vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,931 copying vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,935 copying vermouth/data/mappings/elnedyn/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,939 copying vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,943 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,947 copying vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,951 copying vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,955 copying vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,960 copying vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,964 copying vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,968 copying vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,972 copying vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,976 copying vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,980 copying vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,984 copying vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,988 copying vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,992 copying vermouth/data/mappings/elnedyn/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn 2022-12-22T12:34:20,996 creating build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:20,998 copying vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,002 copying vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,006 copying vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,010 copying vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,014 copying vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,018 copying vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,022 copying vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,026 copying vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:21,030 creating build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,032 copying vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,036 copying vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,040 copying vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,044 copying vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,048 copying vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,052 copying vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,056 copying vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,060 copying vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,064 copying vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,069 copying vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,072 copying vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,076 copying vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,081 copying vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,084 copying vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,088 copying vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,092 copying vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,096 copying vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,100 copying vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,104 copying vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,108 copying vermouth/data/mappings/elnedyn21/modifications.mapping -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,111 copying vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,115 copying vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,119 copying vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,123 copying vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,127 copying vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,131 copying vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,135 copying vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,139 copying vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,143 copying vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/lib/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:21,147 creating build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,149 copying vermouth/data/mappings/martini3001/ala.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,153 copying vermouth/data/mappings/martini3001/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,157 copying vermouth/data/mappings/martini3001/antr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,161 copying vermouth/data/mappings/martini3001/arg.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,164 copying vermouth/data/mappings/martini3001/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,168 copying vermouth/data/mappings/martini3001/ash.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,172 copying vermouth/data/mappings/martini3001/asn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,176 copying vermouth/data/mappings/martini3001/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,181 copying vermouth/data/mappings/martini3001/asp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,184 copying vermouth/data/mappings/martini3001/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,188 copying vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,192 copying vermouth/data/mappings/martini3001/bald.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,196 copying vermouth/data/mappings/martini3001/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,200 copying vermouth/data/mappings/martini3001/c3.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,204 copying vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,208 copying vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,211 copying vermouth/data/mappings/martini3001/cume.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,215 copying vermouth/data/mappings/martini3001/cys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,220 copying vermouth/data/mappings/martini3001/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,223 copying vermouth/data/mappings/martini3001/diol.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,227 copying vermouth/data/mappings/martini3001/diox.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,231 copying vermouth/data/mappings/martini3001/dman.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,235 copying vermouth/data/mappings/martini3001/eben.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,239 copying vermouth/data/mappings/martini3001/fura.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,243 copying vermouth/data/mappings/martini3001/glh.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,247 copying vermouth/data/mappings/martini3001/gln.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,250 copying vermouth/data/mappings/martini3001/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,254 copying vermouth/data/mappings/martini3001/glu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,258 copying vermouth/data/mappings/martini3001/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,263 copying vermouth/data/mappings/martini3001/glup.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,267 copying vermouth/data/mappings/martini3001/gly.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,272 copying vermouth/data/mappings/martini3001/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,276 copying vermouth/data/mappings/martini3001/hid.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,280 copying vermouth/data/mappings/martini3001/hie.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,284 copying vermouth/data/mappings/martini3001/hip.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,288 copying vermouth/data/mappings/martini3001/his.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,292 copying vermouth/data/mappings/martini3001/his.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,296 copying vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,300 copying vermouth/data/mappings/martini3001/hse.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,304 copying vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,308 copying vermouth/data/mappings/martini3001/ile.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,312 copying vermouth/data/mappings/martini3001/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,317 copying vermouth/data/mappings/martini3001/imia.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,321 copying vermouth/data/mappings/martini3001/inda.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,325 copying vermouth/data/mappings/martini3001/indo.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,329 copying vermouth/data/mappings/martini3001/leu.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,333 copying vermouth/data/mappings/martini3001/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,337 copying vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,342 copying vermouth/data/mappings/martini3001/lyn.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,346 copying vermouth/data/mappings/martini3001/lys.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,350 copying vermouth/data/mappings/martini3001/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,354 copying vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,358 copying vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,362 copying vermouth/data/mappings/martini3001/meob.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,366 copying vermouth/data/mappings/martini3001/met.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,371 copying vermouth/data/mappings/martini3001/met.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,375 copying vermouth/data/mappings/martini3001/mind.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,379 copying vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,383 copying vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,387 copying vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,391 copying vermouth/data/mappings/martini3001/naft.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,395 copying vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,399 copying vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,403 copying vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,407 copying vermouth/data/mappings/martini3001/phe.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,411 copying vermouth/data/mappings/martini3001/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,415 copying vermouth/data/mappings/martini3001/phen.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,420 copying vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,424 copying vermouth/data/mappings/martini3001/prld.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,428 copying vermouth/data/mappings/martini3001/pro.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,432 copying vermouth/data/mappings/martini3001/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,436 copying vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,440 copying vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,444 copying vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,448 copying vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,452 copying vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,456 copying vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,460 copying vermouth/data/mappings/martini3001/ser.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,464 copying vermouth/data/mappings/martini3001/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,469 copying vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,473 copying vermouth/data/mappings/martini3001/styr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,477 copying vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,481 copying vermouth/data/mappings/martini3001/thf.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,486 copying vermouth/data/mappings/martini3001/thip.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,490 copying vermouth/data/mappings/martini3001/thp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,494 copying vermouth/data/mappings/martini3001/thr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,498 copying vermouth/data/mappings/martini3001/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,502 copying vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,506 copying vermouth/data/mappings/martini3001/trp.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,513 copying vermouth/data/mappings/martini3001/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,517 copying vermouth/data/mappings/martini3001/tyr.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,521 copying vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,525 copying vermouth/data/mappings/martini3001/val.amber.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,529 copying vermouth/data/mappings/martini3001/val.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,533 copying vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,537 copying vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,541 copying vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/lib/vermouth/data/mappings/martini3001 2022-12-22T12:34:21,545 creating build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,547 copying vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,552 copying vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,556 copying vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,560 copying vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,564 copying vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,568 copying vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,572 copying vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,576 copying vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,580 copying vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,584 copying vermouth/data/mappings/martini30b32/his.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,588 copying vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,592 copying vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,596 copying vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,600 copying vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,604 copying vermouth/data/mappings/martini30b32/met.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,608 copying vermouth/data/mappings/martini30b32/modifications.mapping -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,612 copying vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,616 copying vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,620 copying vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,624 copying vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,628 copying vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,632 copying vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,636 copying vermouth/data/mappings/martini30b32/val.charmm36.map -> build/lib/vermouth/data/mappings/martini30b32 2022-12-22T12:34:21,641 creating build/lib/vermouth/graphing 2022-12-22T12:34:21,642 copying vermouth/graphing/grappa.py -> build/lib/vermouth/graphing 2022-12-22T12:34:21,884 creating build/lib/vermouth/tests/data 2022-12-22T12:34:21,886 copying vermouth/tests/data/1bta_mutated.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:21,897 copying vermouth/tests/data/tri_alanine.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:21,901 copying vermouth/tests/data/1bta.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:21,912 copying vermouth/tests/data/6E8W.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,090 copying vermouth/tests/data/2dn2.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,135 copying vermouth/tests/data/dna-short.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,140 copying vermouth/tests/data/heme.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,144 copying vermouth/tests/data/ala5.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,149 copying vermouth/tests/data/ala5_cg.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,152 copying vermouth/tests/data/2QWO.pdb -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,182 copying vermouth/tests/data/dssp_1bta.ssd -> build/lib/vermouth/tests/data 2022-12-22T12:34:22,187 creating build/lib/vermouth/tests/data/integration_tests 2022-12-22T12:34:22,188 creating build/lib/vermouth/tests/data/integration_tests/tier-1 2022-12-22T12:34:22,189 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:22,192 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:22,196 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:22,225 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,226 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,234 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,238 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,242 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,246 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,257 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,265 copying vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:22,269 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:22,270 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:22,275 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:22,282 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,284 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,288 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,292 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,296 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,301 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,306 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,310 copying vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:22,315 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:22,316 copying vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:22,321 copying vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:22,329 creating build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,330 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,335 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,338 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,342 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,348 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,353 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,359 copying vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:22,364 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:22,365 copying vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:22,374 copying vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:22,378 creating build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,380 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,385 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,390 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,395 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,399 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,403 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,409 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,414 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,418 copying vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:22,423 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:22,425 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:22,429 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:22,441 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,442 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,450 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,454 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,458 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,462 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,469 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,475 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,480 copying vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:22,485 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:22,487 copying vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:22,491 copying vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:22,499 creating build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,501 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,506 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,510 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,515 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,521 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,527 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,532 copying vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:22,538 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:22,540 copying vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:22,545 copying vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:22,568 creating build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,570 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,577 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,582 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,586 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,590 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,601 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,609 copying vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:22,614 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:22,617 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:22,630 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:22,635 creating build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,637 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,642 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,647 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,652 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,662 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,671 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,676 copying vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:22,682 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:22,684 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:22,689 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:22,704 creating build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,706 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,714 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,719 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,724 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,729 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,736 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,743 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,750 copying vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:22,757 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:22,759 copying vermouth/tests/data/integration_tests/tier-1/villin/README -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:22,764 copying vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:22,771 creating build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,773 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,778 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,783 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,788 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,793 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,799 copying vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:22,803 creating build/lib/vermouth/tests/data/integration_tests/tier-0 2022-12-22T12:34:22,804 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:22,806 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:22,811 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:22,820 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,821 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,826 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,830 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,834 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,840 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,845 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,849 copying vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:22,854 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:22,856 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:22,860 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:22,864 creating build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,866 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,871 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,875 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,880 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,884 copying vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:22,888 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:22,890 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:22,895 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:22,901 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,902 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,907 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,911 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,916 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,920 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,925 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,930 copying vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:22,935 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:22,937 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:22,942 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:22,948 creating build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,950 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,955 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,959 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,964 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,969 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,974 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,978 copying vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:22,983 creating build/lib/vermouth/tests/data/force_fields 2022-12-22T12:34:22,984 creating build/lib/vermouth/tests/data/force_fields/martini-test 2022-12-22T12:34:22,986 copying vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/lib/vermouth/tests/data/force_fields/martini-test 2022-12-22T12:34:22,992 creating build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:22,994 copying vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:23,000 copying vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/lib/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:23,004 creating build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:23,005 copying vermouth/tests/data/force_fields/pepplane/general.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:23,010 copying vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:23,014 copying vermouth/tests/data/force_fields/pepplane/ala.ff -> build/lib/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:23,018 creating build/lib/vermouth/tests/data/mappings 2022-12-22T12:34:23,018 creating build/lib/vermouth/tests/data/mappings/universal-test 2022-12-22T12:34:23,020 creating build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-22T12:34:23,022 copying vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-22T12:34:23,027 creating build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:23,029 copying vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:23,033 copying vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/lib/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:23,164 creating build/lib/vermouth/tests/gmx 2022-12-22T12:34:23,166 copying vermouth/tests/gmx/test_gro.py -> build/lib/vermouth/tests/gmx 2022-12-22T12:34:23,172 copying vermouth/tests/gmx/test_itp.py -> build/lib/vermouth/tests/gmx 2022-12-22T12:34:23,177 creating build/lib/vermouth/tests/pdb 2022-12-22T12:34:23,179 copying vermouth/tests/pdb/test_read_pdb.py -> build/lib/vermouth/tests/pdb 2022-12-22T12:34:23,184 copying vermouth/tests/pdb/test_write_pdb.py -> build/lib/vermouth/tests/pdb 2022-12-22T12:34:23,216 running build_scripts 2022-12-22T12:34:23,217 creating build/scripts-3.7 2022-12-22T12:34:23,219 copying and adjusting bin/martinize2 -> build/scripts-3.7 2022-12-22T12:34:23,227 changing mode of build/scripts-3.7/martinize2 from 644 to 755 2022-12-22T12:34:23,228 installing to build/bdist.linux-armv7l/wheel 2022-12-22T12:34:23,229 running install 2022-12-22T12:34:23,347 [pbr] Generating AUTHORS 2022-12-22T12:34:23,375 [pbr] AUTHORS complete (0.0s) 2022-12-22T12:34:23,376 running install_lib 2022-12-22T12:34:23,398 creating build/bdist.linux-armv7l 2022-12-22T12:34:23,399 creating build/bdist.linux-armv7l/wheel 2022-12-22T12:34:23,403 creating build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:23,405 copying build/lib/vermouth/parser_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:23,412 creating build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-22T12:34:23,413 copying build/lib/vermouth/pdb/pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-22T12:34:23,419 copying build/lib/vermouth/pdb/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/pdb 2022-12-22T12:34:23,423 creating build/bdist.linux-armv7l/wheel/vermouth/data 2022-12-22T12:34:23,425 copying build/lib/vermouth/data/quotes.txt -> build/bdist.linux-armv7l/wheel/vermouth/data 2022-12-22T12:34:23,430 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields 2022-12-22T12:34:23,433 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:23,435 copying build/lib/vermouth/data/force_fields/martini30b32/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:23,441 copying build/lib/vermouth/data/force_fields/martini30b32/small_molecules.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:23,444 copying build/lib/vermouth/data/force_fields/martini30b32/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:23,448 copying build/lib/vermouth/data/force_fields/martini30b32/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30b32 2022-12-22T12:34:23,453 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:23,455 copying build/lib/vermouth/data/force_fields/elnedyn21/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:23,459 copying build/lib/vermouth/data/force_fields/elnedyn21/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:23,464 copying build/lib/vermouth/data/force_fields/elnedyn21/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:23,468 copying build/lib/vermouth/data/force_fields/elnedyn21/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn21 2022-12-22T12:34:23,473 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,475 copying build/lib/vermouth/data/force_fields/martini3001/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,479 copying build/lib/vermouth/data/force_fields/martini3001/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,485 copying build/lib/vermouth/data/force_fields/martini3001/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,489 copying build/lib/vermouth/data/force_fields/martini3001/small_molecule_martini3.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,494 copying build/lib/vermouth/data/force_fields/martini3001/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini3001 2022-12-22T12:34:23,498 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:23,500 copying build/lib/vermouth/data/force_fields/elnedyn22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:23,504 copying build/lib/vermouth/data/force_fields/elnedyn22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:23,509 copying build/lib/vermouth/data/force_fields/elnedyn22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:23,513 copying build/lib/vermouth/data/force_fields/elnedyn22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22 2022-12-22T12:34:23,518 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:23,520 copying build/lib/vermouth/data/force_fields/elnedyn22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:23,524 copying build/lib/vermouth/data/force_fields/elnedyn22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:23,529 copying build/lib/vermouth/data/force_fields/elnedyn22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:23,532 copying build/lib/vermouth/data/force_fields/elnedyn22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/elnedyn22p 2022-12-22T12:34:23,537 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-22T12:34:23,539 copying build/lib/vermouth/data/force_fields/amber/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-22T12:34:23,545 copying build/lib/vermouth/data/force_fields/amber/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/amber 2022-12-22T12:34:23,550 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-22T12:34:23,551 copying build/lib/vermouth/data/force_fields/gromos/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-22T12:34:23,561 copying build/lib/vermouth/data/force_fields/gromos/cofactors.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-22T12:34:23,566 copying build/lib/vermouth/data/force_fields/gromos/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/gromos 2022-12-22T12:34:23,571 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:23,572 copying build/lib/vermouth/data/force_fields/martini30dev/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:23,578 copying build/lib/vermouth/data/force_fields/martini30dev/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:23,582 copying build/lib/vermouth/data/force_fields/martini30dev/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini30dev 2022-12-22T12:34:23,587 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-22T12:34:23,589 copying build/lib/vermouth/data/force_fields/charmm/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-22T12:34:23,594 copying build/lib/vermouth/data/force_fields/charmm/small_molecule_charmm.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-22T12:34:23,688 copying build/lib/vermouth/data/force_fields/charmm/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/charmm 2022-12-22T12:34:23,693 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,695 copying build/lib/vermouth/data/force_fields/martini22/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,699 copying build/lib/vermouth/data/force_fields/martini22/nucleotides.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,703 copying build/lib/vermouth/data/force_fields/martini22/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,709 copying build/lib/vermouth/data/force_fields/martini22/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,713 copying build/lib/vermouth/data/force_fields/martini22/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22 2022-12-22T12:34:23,718 creating build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-22T12:34:23,720 copying build/lib/vermouth/data/force_fields/martini22p/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-22T12:34:23,724 copying build/lib/vermouth/data/force_fields/martini22p/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-22T12:34:23,729 copying build/lib/vermouth/data/force_fields/martini22p/citations.bib -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-22T12:34:23,733 copying build/lib/vermouth/data/force_fields/martini22p/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/data/force_fields/martini22p 2022-12-22T12:34:23,740 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:23,742 copying build/lib/vermouth/data/mappings/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:23,748 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,750 copying build/lib/vermouth/data/mappings/martini30b32/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,754 copying build/lib/vermouth/data/mappings/martini30b32/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,758 copying build/lib/vermouth/data/mappings/martini30b32/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,761 copying build/lib/vermouth/data/mappings/martini30b32/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,765 copying build/lib/vermouth/data/mappings/martini30b32/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,769 copying build/lib/vermouth/data/mappings/martini30b32/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,772 copying build/lib/vermouth/data/mappings/martini30b32/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,776 copying build/lib/vermouth/data/mappings/martini30b32/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,780 copying build/lib/vermouth/data/mappings/martini30b32/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,783 copying build/lib/vermouth/data/mappings/martini30b32/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,787 copying build/lib/vermouth/data/mappings/martini30b32/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,791 copying build/lib/vermouth/data/mappings/martini30b32/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,795 copying build/lib/vermouth/data/mappings/martini30b32/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,799 copying build/lib/vermouth/data/mappings/martini30b32/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,802 copying build/lib/vermouth/data/mappings/martini30b32/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,806 copying build/lib/vermouth/data/mappings/martini30b32/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,810 copying build/lib/vermouth/data/mappings/martini30b32/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,814 copying build/lib/vermouth/data/mappings/martini30b32/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,818 copying build/lib/vermouth/data/mappings/martini30b32/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,822 copying build/lib/vermouth/data/mappings/martini30b32/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,825 copying build/lib/vermouth/data/mappings/martini30b32/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,829 copying build/lib/vermouth/data/mappings/martini30b32/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,833 copying build/lib/vermouth/data/mappings/martini30b32/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini30b32 2022-12-22T12:34:23,836 copying build/lib/vermouth/data/mappings/asn.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:23,840 copying build/lib/vermouth/data/mappings/ser.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:23,846 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,848 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,852 copying build/lib/vermouth/data/mappings/elnedyn21/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,855 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,859 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,862 copying build/lib/vermouth/data/mappings/elnedyn21/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,866 copying build/lib/vermouth/data/mappings/elnedyn21/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,869 copying build/lib/vermouth/data/mappings/elnedyn21/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,873 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,876 copying build/lib/vermouth/data/mappings/elnedyn21/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,880 copying build/lib/vermouth/data/mappings/elnedyn21/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,883 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,887 copying build/lib/vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,891 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,894 copying build/lib/vermouth/data/mappings/elnedyn21/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,898 copying build/lib/vermouth/data/mappings/elnedyn21/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,902 copying build/lib/vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,905 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,909 copying build/lib/vermouth/data/mappings/elnedyn21/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,913 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,917 copying build/lib/vermouth/data/mappings/elnedyn21/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,920 copying build/lib/vermouth/data/mappings/elnedyn21/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,924 copying build/lib/vermouth/data/mappings/elnedyn21/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,928 copying build/lib/vermouth/data/mappings/elnedyn21/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,932 copying build/lib/vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,935 copying build/lib/vermouth/data/mappings/elnedyn21/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,939 copying build/lib/vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,943 copying build/lib/vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,946 copying build/lib/vermouth/data/mappings/elnedyn21/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,950 copying build/lib/vermouth/data/mappings/elnedyn21/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn21 2022-12-22T12:34:23,954 copying build/lib/vermouth/data/mappings/cys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:23,962 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,963 copying build/lib/vermouth/data/mappings/martini3001/pyrd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,967 copying build/lib/vermouth/data/mappings/martini3001/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,971 copying build/lib/vermouth/data/mappings/martini3001/gly.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,974 copying build/lib/vermouth/data/mappings/martini3001/lyn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,978 copying build/lib/vermouth/data/mappings/martini3001/ser.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,981 copying build/lib/vermouth/data/mappings/martini3001/val.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,985 copying build/lib/vermouth/data/mappings/martini3001/aspp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,988 copying build/lib/vermouth/data/mappings/martini3001/phmk.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,992 copying build/lib/vermouth/data/mappings/martini3001/meob.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,995 copying build/lib/vermouth/data/mappings/martini3001/diol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:23,999 copying build/lib/vermouth/data/mappings/martini3001/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,002 copying build/lib/vermouth/data/mappings/martini3001/mxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,006 copying build/lib/vermouth/data/mappings/martini3001/styr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,009 copying build/lib/vermouth/data/mappings/martini3001/thp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,013 copying build/lib/vermouth/data/mappings/martini3001/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,017 copying build/lib/vermouth/data/mappings/martini3001/dman.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,020 copying build/lib/vermouth/data/mappings/martini3001/c3.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,024 copying build/lib/vermouth/data/mappings/martini3001/glu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,027 copying build/lib/vermouth/data/mappings/martini3001/pyr1.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,031 copying build/lib/vermouth/data/mappings/martini3001/ile.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,034 copying build/lib/vermouth/data/mappings/martini3001/phe.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,038 copying build/lib/vermouth/data/mappings/martini3001/inda.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,041 copying build/lib/vermouth/data/mappings/martini3001/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,045 copying build/lib/vermouth/data/mappings/martini3001/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,049 copying build/lib/vermouth/data/mappings/martini3001/pxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,053 copying build/lib/vermouth/data/mappings/martini3001/thf.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,057 copying build/lib/vermouth/data/mappings/martini3001/fura.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,061 copying build/lib/vermouth/data/mappings/martini3001/prld.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,064 copying build/lib/vermouth/data/mappings/martini3001/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,068 copying build/lib/vermouth/data/mappings/martini3001/glup.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,072 copying build/lib/vermouth/data/mappings/martini3001/modifications.charmm36.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,076 copying build/lib/vermouth/data/mappings/martini3001/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,080 copying build/lib/vermouth/data/mappings/martini3001/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,083 copying build/lib/vermouth/data/mappings/martini3001/indo.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,087 copying build/lib/vermouth/data/mappings/martini3001/benz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,090 copying build/lib/vermouth/data/mappings/martini3001/zthz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,094 copying build/lib/vermouth/data/mappings/martini3001/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,097 copying build/lib/vermouth/data/mappings/martini3001/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,101 copying build/lib/vermouth/data/mappings/martini3001/naft.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,104 copying build/lib/vermouth/data/mappings/martini3001/hid.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,108 copying build/lib/vermouth/data/mappings/martini3001/leu.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,112 copying build/lib/vermouth/data/mappings/martini3001/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,115 copying build/lib/vermouth/data/mappings/martini3001/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,119 copying build/lib/vermouth/data/mappings/martini3001/glh.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,122 copying build/lib/vermouth/data/mappings/martini3001/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,126 copying build/lib/vermouth/data/mappings/martini3001/trp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,130 copying build/lib/vermouth/data/mappings/martini3001/pro.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,133 copying build/lib/vermouth/data/mappings/martini3001/his.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,137 copying build/lib/vermouth/data/mappings/martini3001/pcro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,140 copying build/lib/vermouth/data/mappings/martini3001/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,144 copying build/lib/vermouth/data/mappings/martini3001/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,147 copying build/lib/vermouth/data/mappings/martini3001/mind.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,151 copying build/lib/vermouth/data/mappings/martini3001/arg.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,155 copying build/lib/vermouth/data/mappings/martini3001/oxyl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,159 copying build/lib/vermouth/data/mappings/martini3001/modifications.amber.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,163 copying build/lib/vermouth/data/mappings/martini3001/phen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,167 copying build/lib/vermouth/data/mappings/martini3001/diox.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,170 copying build/lib/vermouth/data/mappings/martini3001/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,174 copying build/lib/vermouth/data/mappings/martini3001/cys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,177 copying build/lib/vermouth/data/mappings/martini3001/mboa.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,181 copying build/lib/vermouth/data/mappings/martini3001/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,185 copying build/lib/vermouth/data/mappings/martini3001/lsn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,189 copying build/lib/vermouth/data/mappings/martini3001/thip.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,193 copying build/lib/vermouth/data/mappings/martini3001/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,196 copying build/lib/vermouth/data/mappings/martini3001/hip.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,200 copying build/lib/vermouth/data/mappings/martini3001/lys.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,204 copying build/lib/vermouth/data/mappings/martini3001/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,207 copying build/lib/vermouth/data/mappings/martini3001/eben.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,211 copying build/lib/vermouth/data/mappings/martini3001/asn.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,215 copying build/lib/vermouth/data/mappings/martini3001/pyrm.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,218 copying build/lib/vermouth/data/mappings/martini3001/gln.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,222 copying build/lib/vermouth/data/mappings/martini3001/tyr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,226 copying build/lib/vermouth/data/mappings/martini3001/qinl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,229 copying build/lib/vermouth/data/mappings/martini3001/met.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,233 copying build/lib/vermouth/data/mappings/martini3001/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,237 copying build/lib/vermouth/data/mappings/martini3001/cume.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,242 copying build/lib/vermouth/data/mappings/martini3001/ash.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,246 copying build/lib/vermouth/data/mappings/martini3001/zimi.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,249 copying build/lib/vermouth/data/mappings/martini3001/bald.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,253 copying build/lib/vermouth/data/mappings/martini3001/antr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,256 copying build/lib/vermouth/data/mappings/martini3001/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,260 copying build/lib/vermouth/data/mappings/martini3001/zthp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,263 copying build/lib/vermouth/data/mappings/martini3001/thr.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,267 copying build/lib/vermouth/data/mappings/martini3001/hie.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,270 copying build/lib/vermouth/data/mappings/martini3001/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,274 copying build/lib/vermouth/data/mappings/martini3001/sm139.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,278 copying build/lib/vermouth/data/mappings/martini3001/thaz.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,281 copying build/lib/vermouth/data/mappings/martini3001/chxe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,285 copying build/lib/vermouth/data/mappings/martini3001/asp.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,289 copying build/lib/vermouth/data/mappings/martini3001/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,292 copying build/lib/vermouth/data/mappings/martini3001/ala.amber.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,296 copying build/lib/vermouth/data/mappings/martini3001/cpen.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,300 copying build/lib/vermouth/data/mappings/martini3001/nitb.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,303 copying build/lib/vermouth/data/mappings/martini3001/mcpe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,307 copying build/lib/vermouth/data/mappings/martini3001/imia.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,311 copying build/lib/vermouth/data/mappings/martini3001/pyrl.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,315 copying build/lib/vermouth/data/mappings/martini3001/tolu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/martini3001 2022-12-22T12:34:24,318 copying build/lib/vermouth/data/mappings/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,322 copying build/lib/vermouth/data/mappings/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,326 copying build/lib/vermouth/data/mappings/asp.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,330 copying build/lib/vermouth/data/mappings/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,334 copying build/lib/vermouth/data/mappings/thr.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,338 copying build/lib/vermouth/data/mappings/pro.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,341 copying build/lib/vermouth/data/mappings/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,345 copying build/lib/vermouth/data/mappings/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,349 copying build/lib/vermouth/data/mappings/trp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,352 copying build/lib/vermouth/data/mappings/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,356 copying build/lib/vermouth/data/mappings/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,360 copying build/lib/vermouth/data/mappings/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,363 copying build/lib/vermouth/data/mappings/thr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,367 copying build/lib/vermouth/data/mappings/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,370 copying build/lib/vermouth/data/mappings/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,374 copying build/lib/vermouth/data/mappings/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,378 copying build/lib/vermouth/data/mappings/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,382 copying build/lib/vermouth/data/mappings/fmn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,386 copying build/lib/vermouth/data/mappings/hsp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,389 copying build/lib/vermouth/data/mappings/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,393 copying build/lib/vermouth/data/mappings/ile.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,396 copying build/lib/vermouth/data/mappings/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,402 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,404 copying build/lib/vermouth/data/mappings/elnedyn/lys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,408 copying build/lib/vermouth/data/mappings/elnedyn/leu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,412 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,415 copying build/lib/vermouth/data/mappings/elnedyn/popg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,421 creating build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,422 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,426 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,430 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,434 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,437 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,441 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,444 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,448 copying build/lib/vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn/elnedyn22p 2022-12-22T12:34:24,452 copying build/lib/vermouth/data/mappings/elnedyn/gly.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,455 copying build/lib/vermouth/data/mappings/elnedyn/pops.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,459 copying build/lib/vermouth/data/mappings/elnedyn/dppg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,463 copying build/lib/vermouth/data/mappings/elnedyn/arg.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,466 copying build/lib/vermouth/data/mappings/elnedyn/his.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,470 copying build/lib/vermouth/data/mappings/elnedyn/chol.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,474 copying build/lib/vermouth/data/mappings/elnedyn/ser.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,478 copying build/lib/vermouth/data/mappings/elnedyn/met.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,481 copying build/lib/vermouth/data/mappings/elnedyn/dopc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,485 copying build/lib/vermouth/data/mappings/elnedyn/trp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,489 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,492 copying build/lib/vermouth/data/mappings/elnedyn/glu.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,496 copying build/lib/vermouth/data/mappings/elnedyn/gln.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,500 copying build/lib/vermouth/data/mappings/elnedyn/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,503 copying build/lib/vermouth/data/mappings/elnedyn/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,507 copying build/lib/vermouth/data/mappings/elnedyn/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,511 copying build/lib/vermouth/data/mappings/elnedyn/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,514 copying build/lib/vermouth/data/mappings/elnedyn/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,518 copying build/lib/vermouth/data/mappings/elnedyn/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,521 copying build/lib/vermouth/data/mappings/elnedyn/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,525 copying build/lib/vermouth/data/mappings/elnedyn/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,529 copying build/lib/vermouth/data/mappings/elnedyn/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,532 copying build/lib/vermouth/data/mappings/elnedyn/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,535 copying build/lib/vermouth/data/mappings/elnedyn/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,540 copying build/lib/vermouth/data/mappings/elnedyn/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,544 copying build/lib/vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,547 copying build/lib/vermouth/data/mappings/elnedyn/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,551 copying build/lib/vermouth/data/mappings/elnedyn/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings/elnedyn 2022-12-22T12:34:24,555 copying build/lib/vermouth/data/mappings/cys.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,559 copying build/lib/vermouth/data/mappings/ala.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,562 copying build/lib/vermouth/data/mappings/asp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,566 copying build/lib/vermouth/data/mappings/gln.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,570 copying build/lib/vermouth/data/mappings/ile.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,573 copying build/lib/vermouth/data/mappings/lys.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,577 copying build/lib/vermouth/data/mappings/phe.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,581 copying build/lib/vermouth/data/mappings/thr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,584 copying build/lib/vermouth/data/mappings/modifications.gromos.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,588 copying build/lib/vermouth/data/mappings/nad.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,591 copying build/lib/vermouth/data/mappings/arg.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,595 copying build/lib/vermouth/data/mappings/pope.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,599 copying build/lib/vermouth/data/mappings/asn.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,602 copying build/lib/vermouth/data/mappings/hse.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,606 copying build/lib/vermouth/data/mappings/tyr.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,609 copying build/lib/vermouth/data/mappings/dmpc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,613 copying build/lib/vermouth/data/mappings/glu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,617 copying build/lib/vermouth/data/mappings/asp.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,620 copying build/lib/vermouth/data/mappings/phe.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,624 copying build/lib/vermouth/data/mappings/met.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,627 copying build/lib/vermouth/data/mappings/glu0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,631 copying build/lib/vermouth/data/mappings/his.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,634 copying build/lib/vermouth/data/mappings/tpp.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,637 copying build/lib/vermouth/data/mappings/val.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,641 copying build/lib/vermouth/data/mappings/val.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,645 copying build/lib/vermouth/data/mappings/gln.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,648 copying build/lib/vermouth/data/mappings/dppc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,652 copying build/lib/vermouth/data/mappings/asn.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,656 copying build/lib/vermouth/data/mappings/popc.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,660 copying build/lib/vermouth/data/mappings/tyr.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,664 copying build/lib/vermouth/data/mappings/glu.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,667 copying build/lib/vermouth/data/mappings/hsd.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,671 copying build/lib/vermouth/data/mappings/ala.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,675 copying build/lib/vermouth/data/mappings/lys.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,678 copying build/lib/vermouth/data/mappings/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,682 copying build/lib/vermouth/data/mappings/pro.charmm36.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,685 copying build/lib/vermouth/data/mappings/gly.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,689 copying build/lib/vermouth/data/mappings/ser.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,692 copying build/lib/vermouth/data/mappings/leu.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,696 copying build/lib/vermouth/data/mappings/arg.charmm36.martini22p.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,700 copying build/lib/vermouth/data/mappings/asp0.gromos.map -> build/bdist.linux-armv7l/wheel/vermouth/data/mappings 2022-12-22T12:34:24,703 copying build/lib/vermouth/map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,709 copying build/lib/vermouth/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,714 creating build/bdist.linux-armv7l/wheel/vermouth/graphing 2022-12-22T12:34:24,716 copying build/lib/vermouth/graphing/grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/graphing 2022-12-22T12:34:24,720 copying build/lib/vermouth/ismags.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,727 copying build/lib/vermouth/utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,731 copying build/lib/vermouth/log_helpers.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,736 copying build/lib/vermouth/forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,740 copying build/lib/vermouth/citation_parser.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,744 copying build/lib/vermouth/selectors.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,748 copying build/lib/vermouth/graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,753 copying build/lib/vermouth/edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,758 copying build/lib/vermouth/truncating_formatter.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:24,765 creating build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:24,767 copying build/lib/vermouth/tests/test_tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:24,773 creating build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-22T12:34:24,774 copying build/lib/vermouth/tests/pdb/test_write_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-22T12:34:24,779 copying build/lib/vermouth/tests/pdb/test_read_pdb.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/pdb 2022-12-22T12:34:24,784 copying build/lib/vermouth/tests/test_selectors.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:24,788 copying build/lib/vermouth/tests/test_set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:24,793 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:24,795 copying build/lib/vermouth/tests/data/1bta_mutated.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:24,807 copying build/lib/vermouth/tests/data/tri_alanine.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:24,812 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests 2022-12-22T12:34:24,815 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1 2022-12-22T12:34:24,818 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:24,820 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:24,826 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,827 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,834 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,838 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,842 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,845 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,856 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,864 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2 2022-12-22T12:34:24,868 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5-charmm 2022-12-22T12:34:24,890 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:24,892 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:24,897 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,899 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,903 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,907 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,911 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,916 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,921 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,925 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2 2022-12-22T12:34:24,929 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_chain 2022-12-22T12:34:24,938 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:24,940 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:24,945 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,947 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,951 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,955 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,958 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,963 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,969 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,974 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti/martinize2 2022-12-22T12:34:24,979 copying build/lib/vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/bpti 2022-12-22T12:34:24,987 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:24,989 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:24,998 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40 2022-12-22T12:34:25,003 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,005 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,011 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,016 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,020 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,024 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,028 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,034 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,038 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,042 copying build/lib/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/3i40/martinize2 2022-12-22T12:34:25,048 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:25,050 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:25,055 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,057 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,064 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,068 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,073 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,077 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,084 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,090 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,094 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2 2022-12-22T12:34:25,100 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme_prot 2022-12-22T12:34:25,111 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:25,113 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:25,119 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,121 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,125 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,128 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,132 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,138 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,143 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,146 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2 2022-12-22T12:34:25,151 copying build/lib/vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/EN_region 2022-12-22T12:34:25,160 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:25,161 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:25,166 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,168 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,176 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,179 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,183 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,187 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,198 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,206 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2 2022-12-22T12:34:25,210 copying build/lib/vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/1mj5 2022-12-22T12:34:25,233 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:25,234 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:25,247 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap 2022-12-22T12:34:25,252 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,254 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,258 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,262 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,265 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,275 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,282 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,287 copying build/lib/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2 2022-12-22T12:34:25,293 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:25,294 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:25,300 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,302 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,308 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,312 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,315 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,319 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,325 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,331 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,337 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2 2022-12-22T12:34:25,342 copying build/lib/vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/lysozyme 2022-12-22T12:34:25,354 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:25,356 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:25,361 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,363 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,367 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,371 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,375 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,379 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,384 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin/martinize2 2022-12-22T12:34:25,388 copying build/lib/vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-1/villin 2022-12-22T12:34:25,395 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0 2022-12-22T12:34:25,398 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:25,400 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:25,405 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,407 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,411 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,414 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,418 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,423 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,428 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,432 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2 2022-12-22T12:34:25,437 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix 2022-12-22T12:34:25,445 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:25,447 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:25,452 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,454 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,458 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,462 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,466 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,470 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2 2022-12-22T12:34:25,474 copying build/lib/vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/dipro-termini 2022-12-22T12:34:25,479 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:25,481 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:25,486 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,488 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,492 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,496 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,499 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,503 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,507 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,512 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2 2022-12-22T12:34:25,516 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage 2022-12-22T12:34:25,524 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:25,526 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:25,531 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,533 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,537 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,541 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,545 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,549 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,554 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,558 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2 2022-12-22T12:34:25,562 copying build/lib/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet 2022-12-22T12:34:25,570 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields 2022-12-22T12:34:25,572 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2022-12-22T12:34:25,574 copying build/lib/vermouth/tests/data/force_fields/martini-test/aminoacids.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/martini-test 2022-12-22T12:34:25,580 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:25,583 copying build/lib/vermouth/tests/data/force_fields/universal-test/aminoacids.rtp -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:25,589 copying build/lib/vermouth/tests/data/force_fields/universal-test/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/universal-test 2022-12-22T12:34:25,594 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:25,597 copying build/lib/vermouth/tests/data/force_fields/pepplane/general.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:25,601 copying build/lib/vermouth/tests/data/force_fields/pepplane/modifications.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:25,605 copying build/lib/vermouth/tests/data/force_fields/pepplane/ala.ff -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/force_fields/pepplane 2022-12-22T12:34:25,610 copying build/lib/vermouth/tests/data/1bta.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,621 copying build/lib/vermouth/tests/data/6E8W.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,788 copying build/lib/vermouth/tests/data/2dn2.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,832 copying build/lib/vermouth/tests/data/dna-short.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,837 copying build/lib/vermouth/tests/data/heme.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,841 copying build/lib/vermouth/tests/data/ala5.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,844 copying build/lib/vermouth/tests/data/ala5_cg.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,849 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings 2022-12-22T12:34:25,852 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test 2022-12-22T12:34:25,855 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-22T12:34:25,857 copying build/lib/vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/martini-test 2022-12-22T12:34:25,862 creating build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:25,863 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:25,867 copying build/lib/vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping -> build/bdist.linux-armv7l/wheel/vermouth/tests/data/mappings/universal-test/pepplane 2022-12-22T12:34:25,871 copying build/lib/vermouth/tests/data/2QWO.pdb -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,895 copying build/lib/vermouth/tests/data/dssp_1bta.ssd -> build/bdist.linux-armv7l/wheel/vermouth/tests/data 2022-12-22T12:34:25,900 copying build/lib/vermouth/tests/test_ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,905 copying build/lib/vermouth/tests/test_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,910 copying build/lib/vermouth/tests/test_average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,915 copying build/lib/vermouth/tests/test_map_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,920 copying build/lib/vermouth/tests/test_ptm_detection.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,925 copying build/lib/vermouth/tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,929 copying build/lib/vermouth/tests/test_repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,935 copying build/lib/vermouth/tests/test_map_input.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,940 copying build/lib/vermouth/tests/test_do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,949 copying build/lib/vermouth/tests/helper_functions.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,953 copying build/lib/vermouth/tests/datafiles.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,957 copying build/lib/vermouth/tests/test_grappa.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,964 creating build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-22T12:34:25,966 copying build/lib/vermouth/tests/integration_tests/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-22T12:34:25,971 copying build/lib/vermouth/tests/integration_tests/test_integration.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/integration_tests 2022-12-22T12:34:25,976 copying build/lib/vermouth/tests/test_add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,980 copying build/lib/vermouth/tests/test_itp_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,985 copying build/lib/vermouth/tests/test_edge_tuning.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,990 copying build/lib/vermouth/tests/test_logging.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,995 copying build/lib/vermouth/tests/test_graph_utils.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:25,999 copying build/lib/vermouth/tests/test_geometry.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,003 copying build/lib/vermouth/tests/test_make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,009 copying build/lib/vermouth/tests/test_sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,013 copying build/lib/vermouth/tests/test_mapping_integrative.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,018 copying build/lib/vermouth/tests/test_dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,023 copying build/lib/vermouth/tests/molecule_strategies.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,027 copying build/lib/vermouth/tests/test_ismags.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,032 copying build/lib/vermouth/tests/test_annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,037 copying build/lib/vermouth/tests/test_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,041 copying build/lib/vermouth/tests/test_ff_files.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,047 copying build/lib/vermouth/tests/test_apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,052 copying build/lib/vermouth/tests/test_molecule.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,060 copying build/lib/vermouth/tests/test_section_parser.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,064 creating build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-22T12:34:26,066 copying build/lib/vermouth/tests/gmx/test_gro.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-22T12:34:26,072 copying build/lib/vermouth/tests/gmx/test_itp.py -> build/bdist.linux-armv7l/wheel/vermouth/tests/gmx 2022-12-22T12:34:26,076 copying build/lib/vermouth/tests/test_go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,080 copying build/lib/vermouth/tests/test_links.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,085 copying build/lib/vermouth/tests/test_name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,089 copying build/lib/vermouth/tests/test_version.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,093 copying build/lib/vermouth/tests/test_file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,097 copying build/lib/vermouth/tests/test_native_forcefield.py -> build/bdist.linux-armv7l/wheel/vermouth/tests 2022-12-22T12:34:26,102 creating build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,104 copying build/lib/vermouth/processors/gro_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,108 copying build/lib/vermouth/processors/name_moltype.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,112 copying build/lib/vermouth/processors/rename_modified_residues.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,116 copying build/lib/vermouth/processors/add_molecule_edges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,120 copying build/lib/vermouth/processors/annotate_mut_mod.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,124 copying build/lib/vermouth/processors/processor.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,128 copying build/lib/vermouth/processors/go_vs_includes.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,132 copying build/lib/vermouth/processors/tune_cystein_bridges.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,136 copying build/lib/vermouth/processors/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,139 copying build/lib/vermouth/processors/set_molecule_meta.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,143 copying build/lib/vermouth/processors/sort_molecule_atoms.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,146 copying build/lib/vermouth/processors/apply_rubber_band.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,152 copying build/lib/vermouth/processors/do_mapping.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,158 copying build/lib/vermouth/processors/merge_all_molecules.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,161 copying build/lib/vermouth/processors/repair_graph.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,167 copying build/lib/vermouth/processors/pdb_reader.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,170 copying build/lib/vermouth/processors/attach_mass.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,174 copying build/lib/vermouth/processors/merge_chains.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,178 copying build/lib/vermouth/processors/make_bonds.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,183 copying build/lib/vermouth/processors/quote.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,186 copying build/lib/vermouth/processors/canonicalize_modifications.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,191 copying build/lib/vermouth/processors/locate_charge_dummies.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,195 copying build/lib/vermouth/processors/average_beads.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,199 copying build/lib/vermouth/processors/apply_posres.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,203 copying build/lib/vermouth/processors/do_links.py -> build/bdist.linux-armv7l/wheel/vermouth/processors 2022-12-22T12:34:26,207 copying build/lib/vermouth/file_writer.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,211 copying build/lib/vermouth/ffinput.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,217 copying build/lib/vermouth/system.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,222 creating build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,224 copying build/lib/vermouth/gmx/itp_read.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,229 copying build/lib/vermouth/gmx/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,232 copying build/lib/vermouth/gmx/itp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,237 copying build/lib/vermouth/gmx/gro.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,241 copying build/lib/vermouth/gmx/rtp.py -> build/bdist.linux-armv7l/wheel/vermouth/gmx 2022-12-22T12:34:26,245 copying build/lib/vermouth/map_input.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,251 creating build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-22T12:34:26,253 copying build/lib/vermouth/dssp/dssp.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-22T12:34:26,259 copying build/lib/vermouth/dssp/__init__.py -> build/bdist.linux-armv7l/wheel/vermouth/dssp 2022-12-22T12:34:26,263 copying build/lib/vermouth/geometry.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,267 copying build/lib/vermouth/molecule.py -> build/bdist.linux-armv7l/wheel/vermouth 2022-12-22T12:34:26,273 running install_egg_info 2022-12-22T12:34:26,289 Copying vermouth.egg-info to build/bdist.linux-armv7l/wheel/vermouth-0.9.1-py3.7.egg-info 2022-12-22T12:34:26,320 running install_scripts 2022-12-22T12:34:26,323 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.1.data 2022-12-22T12:34:26,323 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.1.data/scripts 2022-12-22T12:34:26,326 copying build/scripts-3.7/martinize2 -> build/bdist.linux-armv7l/wheel/vermouth-0.9.1.data/scripts 2022-12-22T12:34:26,332 changing mode of build/bdist.linux-armv7l/wheel/vermouth-0.9.1.data/scripts/martinize2 to 755 2022-12-22T12:34:26,382 creating build/bdist.linux-armv7l/wheel/vermouth-0.9.1.dist-info/WHEEL 2022-12-22T12:34:26,387 creating '/tmp/pip-wheel-hoqku1vs/.tmp-2djp8k2q/vermouth-0.9.1-py2.py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-22T12:34:26,394 adding 'vermouth/__init__.py' 2022-12-22T12:34:26,398 adding 'vermouth/citation_parser.py' 2022-12-22T12:34:26,404 adding 'vermouth/edge_tuning.py' 2022-12-22T12:34:26,417 adding 'vermouth/ffinput.py' 2022-12-22T12:34:26,421 adding 'vermouth/file_writer.py' 2022-12-22T12:34:26,425 adding 'vermouth/forcefield.py' 2022-12-22T12:34:26,428 adding 'vermouth/geometry.py' 2022-12-22T12:34:26,433 adding 'vermouth/graph_utils.py' 2022-12-22T12:34:26,446 adding 'vermouth/ismags.py' 2022-12-22T12:34:26,451 adding 'vermouth/log_helpers.py' 2022-12-22T12:34:26,458 adding 'vermouth/map_input.py' 2022-12-22T12:34:26,468 adding 'vermouth/map_parser.py' 2022-12-22T12:34:26,484 adding 'vermouth/molecule.py' 2022-12-22T12:34:26,492 adding 'vermouth/parser_utils.py' 2022-12-22T12:34:26,495 adding 'vermouth/selectors.py' 2022-12-22T12:34:26,498 adding 'vermouth/system.py' 2022-12-22T12:34:26,501 adding 'vermouth/truncating_formatter.py' 2022-12-22T12:34:26,505 adding 'vermouth/utils.py' 2022-12-22T12:34:26,509 adding 'vermouth/data/quotes.txt' 2022-12-22T12:34:26,520 adding 'vermouth/data/force_fields/amber/aminoacids.rtp' 2022-12-22T12:34:26,523 adding 'vermouth/data/force_fields/amber/modifications.ff' 2022-12-22T12:34:26,529 adding 'vermouth/data/force_fields/charmm/aminoacids.rtp' 2022-12-22T12:34:26,532 adding 'vermouth/data/force_fields/charmm/modifications.ff' 2022-12-22T12:34:27,040 adding 'vermouth/data/force_fields/charmm/small_molecule_charmm.ff' 2022-12-22T12:34:27,083 adding 'vermouth/data/force_fields/elnedyn21/aminoacids.ff' 2022-12-22T12:34:27,086 adding 'vermouth/data/force_fields/elnedyn21/citations.bib' 2022-12-22T12:34:27,089 adding 'vermouth/data/force_fields/elnedyn21/general.ff' 2022-12-22T12:34:27,092 adding 'vermouth/data/force_fields/elnedyn21/modifications.ff' 2022-12-22T12:34:27,097 adding 'vermouth/data/force_fields/elnedyn22/aminoacids.ff' 2022-12-22T12:34:27,100 adding 'vermouth/data/force_fields/elnedyn22/citations.bib' 2022-12-22T12:34:27,103 adding 'vermouth/data/force_fields/elnedyn22/general.ff' 2022-12-22T12:34:27,105 adding 'vermouth/data/force_fields/elnedyn22/modifications.ff' 2022-12-22T12:34:27,111 adding 'vermouth/data/force_fields/elnedyn22p/aminoacids.ff' 2022-12-22T12:34:27,114 adding 'vermouth/data/force_fields/elnedyn22p/citations.bib' 2022-12-22T12:34:27,117 adding 'vermouth/data/force_fields/elnedyn22p/general.ff' 2022-12-22T12:34:27,120 adding 'vermouth/data/force_fields/elnedyn22p/modifications.ff' 2022-12-22T12:34:27,130 adding 'vermouth/data/force_fields/gromos/aminoacids.rtp' 2022-12-22T12:34:27,136 adding 'vermouth/data/force_fields/gromos/cofactors.ff' 2022-12-22T12:34:27,139 adding 'vermouth/data/force_fields/gromos/modifications.ff' 2022-12-22T12:34:27,146 adding 'vermouth/data/force_fields/martini22/aminoacids.ff' 2022-12-22T12:34:27,149 adding 'vermouth/data/force_fields/martini22/citations.bib' 2022-12-22T12:34:27,151 adding 'vermouth/data/force_fields/martini22/general.ff' 2022-12-22T12:34:27,154 adding 'vermouth/data/force_fields/martini22/modifications.ff' 2022-12-22T12:34:27,157 adding 'vermouth/data/force_fields/martini22/nucleotides.ff' 2022-12-22T12:34:27,164 adding 'vermouth/data/force_fields/martini22p/aminoacids.ff' 2022-12-22T12:34:27,167 adding 'vermouth/data/force_fields/martini22p/citations.bib' 2022-12-22T12:34:27,170 adding 'vermouth/data/force_fields/martini22p/general.ff' 2022-12-22T12:34:27,172 adding 'vermouth/data/force_fields/martini22p/modifications.ff' 2022-12-22T12:34:27,180 adding 'vermouth/data/force_fields/martini3001/aminoacids.ff' 2022-12-22T12:34:27,184 adding 'vermouth/data/force_fields/martini3001/citations.bib' 2022-12-22T12:34:27,186 adding 'vermouth/data/force_fields/martini3001/general.ff' 2022-12-22T12:34:27,189 adding 'vermouth/data/force_fields/martini3001/modifications.ff' 2022-12-22T12:34:27,193 adding 'vermouth/data/force_fields/martini3001/small_molecule_martini3.ff' 2022-12-22T12:34:27,200 adding 'vermouth/data/force_fields/martini30b32/aminoacids.ff' 2022-12-22T12:34:27,203 adding 'vermouth/data/force_fields/martini30b32/citations.bib' 2022-12-22T12:34:27,205 adding 'vermouth/data/force_fields/martini30b32/modifications.ff' 2022-12-22T12:34:27,208 adding 'vermouth/data/force_fields/martini30b32/small_molecules.ff' 2022-12-22T12:34:27,214 adding 'vermouth/data/force_fields/martini30dev/aminoacids.ff' 2022-12-22T12:34:27,217 adding 'vermouth/data/force_fields/martini30dev/citations.bib' 2022-12-22T12:34:27,220 adding 'vermouth/data/force_fields/martini30dev/modifications.ff' 2022-12-22T12:34:27,226 adding 'vermouth/data/mappings/ala.charmm36.map' 2022-12-22T12:34:27,229 adding 'vermouth/data/mappings/ala.gromos.map' 2022-12-22T12:34:27,232 adding 'vermouth/data/mappings/arg.charmm36.map' 2022-12-22T12:34:27,235 adding 'vermouth/data/mappings/arg.charmm36.martini22p.map' 2022-12-22T12:34:27,237 adding 'vermouth/data/mappings/arg.gromos.map' 2022-12-22T12:34:27,240 adding 'vermouth/data/mappings/asn.charmm36.map' 2022-12-22T12:34:27,243 adding 'vermouth/data/mappings/asn.charmm36.martini22p.map' 2022-12-22T12:34:27,245 adding 'vermouth/data/mappings/asn.gromos.map' 2022-12-22T12:34:27,248 adding 'vermouth/data/mappings/asp.charmm36.map' 2022-12-22T12:34:27,251 adding 'vermouth/data/mappings/asp.charmm36.martini22p.map' 2022-12-22T12:34:27,253 adding 'vermouth/data/mappings/asp.gromos.map' 2022-12-22T12:34:27,255 adding 'vermouth/data/mappings/asp0.gromos.map' 2022-12-22T12:34:27,259 adding 'vermouth/data/mappings/chol.charmm36.map' 2022-12-22T12:34:27,261 adding 'vermouth/data/mappings/cys.charmm36.map' 2022-12-22T12:34:27,264 adding 'vermouth/data/mappings/cys.gromos.map' 2022-12-22T12:34:27,267 adding 'vermouth/data/mappings/dmpc.charmm36.map' 2022-12-22T12:34:27,271 adding 'vermouth/data/mappings/dopc.charmm36.map' 2022-12-22T12:34:27,275 adding 'vermouth/data/mappings/dppc.charmm36.map' 2022-12-22T12:34:27,279 adding 'vermouth/data/mappings/dppg.charmm36.map' 2022-12-22T12:34:27,281 adding 'vermouth/data/mappings/fmn.gromos.map' 2022-12-22T12:34:27,284 adding 'vermouth/data/mappings/gln.charmm36.map' 2022-12-22T12:34:27,287 adding 'vermouth/data/mappings/gln.charmm36.martini22p.map' 2022-12-22T12:34:27,290 adding 'vermouth/data/mappings/gln.gromos.map' 2022-12-22T12:34:27,292 adding 'vermouth/data/mappings/glu.charmm36.map' 2022-12-22T12:34:27,295 adding 'vermouth/data/mappings/glu.charmm36.martini22p.map' 2022-12-22T12:34:27,297 adding 'vermouth/data/mappings/glu.gromos.map' 2022-12-22T12:34:27,300 adding 'vermouth/data/mappings/glu0.gromos.map' 2022-12-22T12:34:27,302 adding 'vermouth/data/mappings/gly.charmm36.map' 2022-12-22T12:34:27,305 adding 'vermouth/data/mappings/gly.gromos.map' 2022-12-22T12:34:27,308 adding 'vermouth/data/mappings/his.charmm36.map' 2022-12-22T12:34:27,310 adding 'vermouth/data/mappings/his.gromos.map' 2022-12-22T12:34:27,313 adding 'vermouth/data/mappings/hsd.charmm36.map' 2022-12-22T12:34:27,315 adding 'vermouth/data/mappings/hse.charmm36.map' 2022-12-22T12:34:27,318 adding 'vermouth/data/mappings/hsp.charmm36.map' 2022-12-22T12:34:27,321 adding 'vermouth/data/mappings/ile.charmm36.map' 2022-12-22T12:34:27,323 adding 'vermouth/data/mappings/ile.gromos.map' 2022-12-22T12:34:27,326 adding 'vermouth/data/mappings/leu.charmm36.map' 2022-12-22T12:34:27,328 adding 'vermouth/data/mappings/leu.gromos.map' 2022-12-22T12:34:27,331 adding 'vermouth/data/mappings/lys.charmm36.map' 2022-12-22T12:34:27,333 adding 'vermouth/data/mappings/lys.charmm36.martini22p.map' 2022-12-22T12:34:27,336 adding 'vermouth/data/mappings/lys.gromos.map' 2022-12-22T12:34:27,338 adding 'vermouth/data/mappings/met.charmm36.map' 2022-12-22T12:34:27,341 adding 'vermouth/data/mappings/met.gromos.map' 2022-12-22T12:34:27,343 adding 'vermouth/data/mappings/modifications.gromos.mapping' 2022-12-22T12:34:27,346 adding 'vermouth/data/mappings/modifications.mapping' 2022-12-22T12:34:27,349 adding 'vermouth/data/mappings/nad.gromos.map' 2022-12-22T12:34:27,351 adding 'vermouth/data/mappings/phe.charmm36.map' 2022-12-22T12:34:27,354 adding 'vermouth/data/mappings/phe.gromos.map' 2022-12-22T12:34:27,357 adding 'vermouth/data/mappings/popc.charmm36.map' 2022-12-22T12:34:27,361 adding 'vermouth/data/mappings/pope.charmm36.map' 2022-12-22T12:34:27,365 adding 'vermouth/data/mappings/popg.charmm36.map' 2022-12-22T12:34:27,368 adding 'vermouth/data/mappings/pops.charmm36.map' 2022-12-22T12:34:27,371 adding 'vermouth/data/mappings/pro.charmm36.map' 2022-12-22T12:34:27,373 adding 'vermouth/data/mappings/pro.gromos.map' 2022-12-22T12:34:27,376 adding 'vermouth/data/mappings/ser.charmm36.map' 2022-12-22T12:34:27,379 adding 'vermouth/data/mappings/ser.charmm36.martini22p.map' 2022-12-22T12:34:27,381 adding 'vermouth/data/mappings/ser.gromos.map' 2022-12-22T12:34:27,383 adding 'vermouth/data/mappings/thr.charmm36.map' 2022-12-22T12:34:27,386 adding 'vermouth/data/mappings/thr.charmm36.martini22p.map' 2022-12-22T12:34:27,389 adding 'vermouth/data/mappings/thr.gromos.map' 2022-12-22T12:34:27,391 adding 'vermouth/data/mappings/tpp.gromos.map' 2022-12-22T12:34:27,394 adding 'vermouth/data/mappings/trp.charmm36.map' 2022-12-22T12:34:27,397 adding 'vermouth/data/mappings/trp.gromos.map' 2022-12-22T12:34:27,399 adding 'vermouth/data/mappings/tyr.charmm36.map' 2022-12-22T12:34:27,402 adding 'vermouth/data/mappings/tyr.gromos.map' 2022-12-22T12:34:27,404 adding 'vermouth/data/mappings/val.charmm36.map' 2022-12-22T12:34:27,407 adding 'vermouth/data/mappings/val.gromos.map' 2022-12-22T12:34:27,412 adding 'vermouth/data/mappings/elnedyn/ala.charmm36.map' 2022-12-22T12:34:27,415 adding 'vermouth/data/mappings/elnedyn/arg.charmm36.map' 2022-12-22T12:34:27,417 adding 'vermouth/data/mappings/elnedyn/asn.charmm36.map' 2022-12-22T12:34:27,420 adding 'vermouth/data/mappings/elnedyn/asp.charmm36.map' 2022-12-22T12:34:27,423 adding 'vermouth/data/mappings/elnedyn/chol.charmm36.map' 2022-12-22T12:34:27,426 adding 'vermouth/data/mappings/elnedyn/cys.charmm36.map' 2022-12-22T12:34:27,430 adding 'vermouth/data/mappings/elnedyn/dmpc.charmm36.map' 2022-12-22T12:34:27,433 adding 'vermouth/data/mappings/elnedyn/dopc.charmm36.map' 2022-12-22T12:34:27,437 adding 'vermouth/data/mappings/elnedyn/dppc.charmm36.map' 2022-12-22T12:34:27,441 adding 'vermouth/data/mappings/elnedyn/dppg.charmm36.map' 2022-12-22T12:34:27,443 adding 'vermouth/data/mappings/elnedyn/gln.charmm36.map' 2022-12-22T12:34:27,446 adding 'vermouth/data/mappings/elnedyn/glu.charmm36.map' 2022-12-22T12:34:27,448 adding 'vermouth/data/mappings/elnedyn/gly.charmm36.map' 2022-12-22T12:34:27,451 adding 'vermouth/data/mappings/elnedyn/his.charmm36.map' 2022-12-22T12:34:27,454 adding 'vermouth/data/mappings/elnedyn/ile.charmm36.map' 2022-12-22T12:34:27,457 adding 'vermouth/data/mappings/elnedyn/leu.charmm36.map' 2022-12-22T12:34:27,459 adding 'vermouth/data/mappings/elnedyn/lys.charmm36.map' 2022-12-22T12:34:27,462 adding 'vermouth/data/mappings/elnedyn/met.charmm36.map' 2022-12-22T12:34:27,464 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn21.mapping' 2022-12-22T12:34:27,467 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22.mapping' 2022-12-22T12:34:27,470 adding 'vermouth/data/mappings/elnedyn/modifications.elnedyn22p.mapping' 2022-12-22T12:34:27,472 adding 'vermouth/data/mappings/elnedyn/phe.charmm36.map' 2022-12-22T12:34:27,476 adding 'vermouth/data/mappings/elnedyn/popc.charmm36.map' 2022-12-22T12:34:27,480 adding 'vermouth/data/mappings/elnedyn/pope.charmm36.map' 2022-12-22T12:34:27,484 adding 'vermouth/data/mappings/elnedyn/popg.charmm36.map' 2022-12-22T12:34:27,487 adding 'vermouth/data/mappings/elnedyn/pops.charmm36.map' 2022-12-22T12:34:27,490 adding 'vermouth/data/mappings/elnedyn/pro.charmm36.map' 2022-12-22T12:34:27,493 adding 'vermouth/data/mappings/elnedyn/ser.charmm36.map' 2022-12-22T12:34:27,495 adding 'vermouth/data/mappings/elnedyn/thr.charmm36.map' 2022-12-22T12:34:27,498 adding 'vermouth/data/mappings/elnedyn/trp.charmm36.map' 2022-12-22T12:34:27,501 adding 'vermouth/data/mappings/elnedyn/tyr.charmm36.map' 2022-12-22T12:34:27,504 adding 'vermouth/data/mappings/elnedyn/val.charmm36.map' 2022-12-22T12:34:27,508 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/arg.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,511 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asn.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,513 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/asp.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,516 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/gln.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,519 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/glu.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,522 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/lys.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,524 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/ser.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,527 adding 'vermouth/data/mappings/elnedyn/elnedyn22p/thr.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,532 adding 'vermouth/data/mappings/elnedyn21/ala.charmm36.map' 2022-12-22T12:34:27,534 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,537 adding 'vermouth/data/mappings/elnedyn21/arg.charmm36.map' 2022-12-22T12:34:27,540 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,542 adding 'vermouth/data/mappings/elnedyn21/asn.charmm36.map' 2022-12-22T12:34:27,545 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,548 adding 'vermouth/data/mappings/elnedyn21/asp.charmm36.map' 2022-12-22T12:34:27,550 adding 'vermouth/data/mappings/elnedyn21/cys.charmm36.map' 2022-12-22T12:34:27,553 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,555 adding 'vermouth/data/mappings/elnedyn21/gln.charmm36.map' 2022-12-22T12:34:27,558 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,561 adding 'vermouth/data/mappings/elnedyn21/glu.charmm36.map' 2022-12-22T12:34:27,563 adding 'vermouth/data/mappings/elnedyn21/gly.charmm36.map' 2022-12-22T12:34:27,566 adding 'vermouth/data/mappings/elnedyn21/his.charmm36.map' 2022-12-22T12:34:27,569 adding 'vermouth/data/mappings/elnedyn21/ile.charmm36.map' 2022-12-22T12:34:27,571 adding 'vermouth/data/mappings/elnedyn21/leu.charmm36.map' 2022-12-22T12:34:27,574 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,576 adding 'vermouth/data/mappings/elnedyn21/lys.charmm36.map' 2022-12-22T12:34:27,579 adding 'vermouth/data/mappings/elnedyn21/met.charmm36.map' 2022-12-22T12:34:27,582 adding 'vermouth/data/mappings/elnedyn21/modifications.mapping' 2022-12-22T12:34:27,585 adding 'vermouth/data/mappings/elnedyn21/phe.charmm36.map' 2022-12-22T12:34:27,587 adding 'vermouth/data/mappings/elnedyn21/pro.charmm36.map' 2022-12-22T12:34:27,590 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,592 adding 'vermouth/data/mappings/elnedyn21/ser.charmm36.map' 2022-12-22T12:34:27,595 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.elnedyn22p.map' 2022-12-22T12:34:27,597 adding 'vermouth/data/mappings/elnedyn21/thr.charmm36.map' 2022-12-22T12:34:27,600 adding 'vermouth/data/mappings/elnedyn21/trp.charmm36.map' 2022-12-22T12:34:27,603 adding 'vermouth/data/mappings/elnedyn21/tyr.charmm36.map' 2022-12-22T12:34:27,605 adding 'vermouth/data/mappings/elnedyn21/val.charmm36.map' 2022-12-22T12:34:27,613 adding 'vermouth/data/mappings/martini3001/ala.amber.map' 2022-12-22T12:34:27,616 adding 'vermouth/data/mappings/martini3001/ala.charmm36.map' 2022-12-22T12:34:27,618 adding 'vermouth/data/mappings/martini3001/antr.charmm36.map' 2022-12-22T12:34:27,621 adding 'vermouth/data/mappings/martini3001/arg.amber.map' 2022-12-22T12:34:27,623 adding 'vermouth/data/mappings/martini3001/arg.charmm36.map' 2022-12-22T12:34:27,626 adding 'vermouth/data/mappings/martini3001/ash.amber.map' 2022-12-22T12:34:27,629 adding 'vermouth/data/mappings/martini3001/asn.amber.map' 2022-12-22T12:34:27,631 adding 'vermouth/data/mappings/martini3001/asn.charmm36.map' 2022-12-22T12:34:27,634 adding 'vermouth/data/mappings/martini3001/asp.amber.map' 2022-12-22T12:34:27,637 adding 'vermouth/data/mappings/martini3001/asp.charmm36.map' 2022-12-22T12:34:27,639 adding 'vermouth/data/mappings/martini3001/aspp.charmm36.map' 2022-12-22T12:34:27,642 adding 'vermouth/data/mappings/martini3001/bald.charmm36.map' 2022-12-22T12:34:27,644 adding 'vermouth/data/mappings/martini3001/benz.charmm36.map' 2022-12-22T12:34:27,646 adding 'vermouth/data/mappings/martini3001/c3.charmm36.map' 2022-12-22T12:34:27,649 adding 'vermouth/data/mappings/martini3001/chxe.charmm36.map' 2022-12-22T12:34:27,651 adding 'vermouth/data/mappings/martini3001/cpen.charmm36.map' 2022-12-22T12:34:27,653 adding 'vermouth/data/mappings/martini3001/cume.charmm36.map' 2022-12-22T12:34:27,656 adding 'vermouth/data/mappings/martini3001/cys.amber.map' 2022-12-22T12:34:27,659 adding 'vermouth/data/mappings/martini3001/cys.charmm36.map' 2022-12-22T12:34:27,661 adding 'vermouth/data/mappings/martini3001/diol.charmm36.map' 2022-12-22T12:34:27,663 adding 'vermouth/data/mappings/martini3001/diox.charmm36.map' 2022-12-22T12:34:27,666 adding 'vermouth/data/mappings/martini3001/dman.charmm36.map' 2022-12-22T12:34:27,668 adding 'vermouth/data/mappings/martini3001/eben.charmm36.map' 2022-12-22T12:34:27,670 adding 'vermouth/data/mappings/martini3001/fura.charmm36.map' 2022-12-22T12:34:27,673 adding 'vermouth/data/mappings/martini3001/glh.amber.map' 2022-12-22T12:34:27,675 adding 'vermouth/data/mappings/martini3001/gln.amber.map' 2022-12-22T12:34:27,678 adding 'vermouth/data/mappings/martini3001/gln.charmm36.map' 2022-12-22T12:34:27,681 adding 'vermouth/data/mappings/martini3001/glu.amber.map' 2022-12-22T12:34:27,684 adding 'vermouth/data/mappings/martini3001/glu.charmm36.map' 2022-12-22T12:34:27,686 adding 'vermouth/data/mappings/martini3001/glup.charmm36.map' 2022-12-22T12:34:27,900 adding 'vermouth/data/mappings/martini3001/gly.amber.map' 2022-12-22T12:34:27,903 adding 'vermouth/data/mappings/martini3001/gly.charmm36.map' 2022-12-22T12:34:27,905 adding 'vermouth/data/mappings/martini3001/hid.amber.map' 2022-12-22T12:34:27,908 adding 'vermouth/data/mappings/martini3001/hie.amber.map' 2022-12-22T12:34:27,911 adding 'vermouth/data/mappings/martini3001/hip.amber.map' 2022-12-22T12:34:27,914 adding 'vermouth/data/mappings/martini3001/his.amber.map' 2022-12-22T12:34:27,916 adding 'vermouth/data/mappings/martini3001/his.charmm36.map' 2022-12-22T12:34:27,919 adding 'vermouth/data/mappings/martini3001/hsd.charmm36.map' 2022-12-22T12:34:27,922 adding 'vermouth/data/mappings/martini3001/hse.charmm36.map' 2022-12-22T12:34:27,924 adding 'vermouth/data/mappings/martini3001/hsp.charmm36.map' 2022-12-22T12:34:27,927 adding 'vermouth/data/mappings/martini3001/ile.amber.map' 2022-12-22T12:34:27,930 adding 'vermouth/data/mappings/martini3001/ile.charmm36.map' 2022-12-22T12:34:27,932 adding 'vermouth/data/mappings/martini3001/imia.charmm36.map' 2022-12-22T12:34:27,935 adding 'vermouth/data/mappings/martini3001/inda.charmm36.map' 2022-12-22T12:34:27,937 adding 'vermouth/data/mappings/martini3001/indo.charmm36.map' 2022-12-22T12:34:27,940 adding 'vermouth/data/mappings/martini3001/leu.amber.map' 2022-12-22T12:34:27,943 adding 'vermouth/data/mappings/martini3001/leu.charmm36.map' 2022-12-22T12:34:27,946 adding 'vermouth/data/mappings/martini3001/lsn.charmm36.map' 2022-12-22T12:34:27,949 adding 'vermouth/data/mappings/martini3001/lyn.amber.map' 2022-12-22T12:34:27,951 adding 'vermouth/data/mappings/martini3001/lys.amber.map' 2022-12-22T12:34:27,954 adding 'vermouth/data/mappings/martini3001/lys.charmm36.map' 2022-12-22T12:34:27,956 adding 'vermouth/data/mappings/martini3001/mboa.charmm36.map' 2022-12-22T12:34:27,959 adding 'vermouth/data/mappings/martini3001/mcpe.charmm36.map' 2022-12-22T12:34:27,962 adding 'vermouth/data/mappings/martini3001/meob.charmm36.map' 2022-12-22T12:34:27,964 adding 'vermouth/data/mappings/martini3001/met.amber.map' 2022-12-22T12:34:27,967 adding 'vermouth/data/mappings/martini3001/met.charmm36.map' 2022-12-22T12:34:27,970 adding 'vermouth/data/mappings/martini3001/mind.charmm36.map' 2022-12-22T12:34:27,972 adding 'vermouth/data/mappings/martini3001/modifications.amber.mapping' 2022-12-22T12:34:27,975 adding 'vermouth/data/mappings/martini3001/modifications.charmm36.mapping' 2022-12-22T12:34:27,977 adding 'vermouth/data/mappings/martini3001/mxyl.charmm36.map' 2022-12-22T12:34:27,980 adding 'vermouth/data/mappings/martini3001/naft.charmm36.map' 2022-12-22T12:34:27,982 adding 'vermouth/data/mappings/martini3001/nitb.charmm36.map' 2022-12-22T12:34:27,985 adding 'vermouth/data/mappings/martini3001/oxyl.charmm36.map' 2022-12-22T12:34:27,987 adding 'vermouth/data/mappings/martini3001/pcro.charmm36.map' 2022-12-22T12:34:27,990 adding 'vermouth/data/mappings/martini3001/phe.amber.map' 2022-12-22T12:34:27,993 adding 'vermouth/data/mappings/martini3001/phe.charmm36.map' 2022-12-22T12:34:27,996 adding 'vermouth/data/mappings/martini3001/phen.charmm36.map' 2022-12-22T12:34:27,998 adding 'vermouth/data/mappings/martini3001/phmk.charmm36.map' 2022-12-22T12:34:28,001 adding 'vermouth/data/mappings/martini3001/prld.charmm36.map' 2022-12-22T12:34:28,003 adding 'vermouth/data/mappings/martini3001/pro.amber.map' 2022-12-22T12:34:28,006 adding 'vermouth/data/mappings/martini3001/pro.charmm36.map' 2022-12-22T12:34:28,009 adding 'vermouth/data/mappings/martini3001/pxyl.charmm36.map' 2022-12-22T12:34:28,011 adding 'vermouth/data/mappings/martini3001/pyr1.charmm36.map' 2022-12-22T12:34:28,014 adding 'vermouth/data/mappings/martini3001/pyrd.charmm36.map' 2022-12-22T12:34:28,016 adding 'vermouth/data/mappings/martini3001/pyrl.charmm36.map' 2022-12-22T12:34:28,019 adding 'vermouth/data/mappings/martini3001/pyrm.charmm36.map' 2022-12-22T12:34:28,021 adding 'vermouth/data/mappings/martini3001/qinl.charmm36.map' 2022-12-22T12:34:28,024 adding 'vermouth/data/mappings/martini3001/ser.amber.map' 2022-12-22T12:34:28,027 adding 'vermouth/data/mappings/martini3001/ser.charmm36.map' 2022-12-22T12:34:28,029 adding 'vermouth/data/mappings/martini3001/sm139.charmm36.map' 2022-12-22T12:34:28,032 adding 'vermouth/data/mappings/martini3001/styr.charmm36.map' 2022-12-22T12:34:28,034 adding 'vermouth/data/mappings/martini3001/thaz.charmm36.map' 2022-12-22T12:34:28,037 adding 'vermouth/data/mappings/martini3001/thf.charmm36.map' 2022-12-22T12:34:28,040 adding 'vermouth/data/mappings/martini3001/thip.charmm36.map' 2022-12-22T12:34:28,042 adding 'vermouth/data/mappings/martini3001/thp.charmm36.map' 2022-12-22T12:34:28,045 adding 'vermouth/data/mappings/martini3001/thr.amber.map' 2022-12-22T12:34:28,047 adding 'vermouth/data/mappings/martini3001/thr.charmm36.map' 2022-12-22T12:34:28,050 adding 'vermouth/data/mappings/martini3001/tolu.charmm36.map' 2022-12-22T12:34:28,053 adding 'vermouth/data/mappings/martini3001/trp.amber.map' 2022-12-22T12:34:28,055 adding 'vermouth/data/mappings/martini3001/trp.charmm36.map' 2022-12-22T12:34:28,058 adding 'vermouth/data/mappings/martini3001/tyr.amber.map' 2022-12-22T12:34:28,061 adding 'vermouth/data/mappings/martini3001/tyr.charmm36.map' 2022-12-22T12:34:28,063 adding 'vermouth/data/mappings/martini3001/val.amber.map' 2022-12-22T12:34:28,066 adding 'vermouth/data/mappings/martini3001/val.charmm36.map' 2022-12-22T12:34:28,068 adding 'vermouth/data/mappings/martini3001/zimi.charmm36.map' 2022-12-22T12:34:28,071 adding 'vermouth/data/mappings/martini3001/zthp.charmm36.map' 2022-12-22T12:34:28,073 adding 'vermouth/data/mappings/martini3001/zthz.charmm36.map' 2022-12-22T12:34:28,078 adding 'vermouth/data/mappings/martini30b32/ala.charmm36.map' 2022-12-22T12:34:28,081 adding 'vermouth/data/mappings/martini30b32/arg.charmm36.map' 2022-12-22T12:34:28,083 adding 'vermouth/data/mappings/martini30b32/asn.charmm36.map' 2022-12-22T12:34:28,086 adding 'vermouth/data/mappings/martini30b32/asp.charmm36.map' 2022-12-22T12:34:28,089 adding 'vermouth/data/mappings/martini30b32/benz.charmm36.map' 2022-12-22T12:34:28,091 adding 'vermouth/data/mappings/martini30b32/cys.charmm36.map' 2022-12-22T12:34:28,094 adding 'vermouth/data/mappings/martini30b32/gln.charmm36.map' 2022-12-22T12:34:28,097 adding 'vermouth/data/mappings/martini30b32/glu.charmm36.map' 2022-12-22T12:34:28,099 adding 'vermouth/data/mappings/martini30b32/gly.charmm36.map' 2022-12-22T12:34:28,102 adding 'vermouth/data/mappings/martini30b32/his.charmm36.map' 2022-12-22T12:34:28,105 adding 'vermouth/data/mappings/martini30b32/hsd.charmm36.map' 2022-12-22T12:34:28,107 adding 'vermouth/data/mappings/martini30b32/ile.charmm36.map' 2022-12-22T12:34:28,110 adding 'vermouth/data/mappings/martini30b32/leu.charmm36.map' 2022-12-22T12:34:28,113 adding 'vermouth/data/mappings/martini30b32/lys.charmm36.map' 2022-12-22T12:34:28,116 adding 'vermouth/data/mappings/martini30b32/met.charmm36.map' 2022-12-22T12:34:28,118 adding 'vermouth/data/mappings/martini30b32/modifications.mapping' 2022-12-22T12:34:28,121 adding 'vermouth/data/mappings/martini30b32/phe.charmm36.map' 2022-12-22T12:34:28,124 adding 'vermouth/data/mappings/martini30b32/pro.charmm36.map' 2022-12-22T12:34:28,126 adding 'vermouth/data/mappings/martini30b32/ser.charmm36.map' 2022-12-22T12:34:28,129 adding 'vermouth/data/mappings/martini30b32/thr.charmm36.map' 2022-12-22T12:34:28,133 adding 'vermouth/data/mappings/martini30b32/trp.charmm36.map' 2022-12-22T12:34:28,136 adding 'vermouth/data/mappings/martini30b32/tyr.charmm36.map' 2022-12-22T12:34:28,139 adding 'vermouth/data/mappings/martini30b32/val.charmm36.map' 2022-12-22T12:34:28,142 adding 'vermouth/dssp/__init__.py' 2022-12-22T12:34:28,150 adding 'vermouth/dssp/dssp.py' 2022-12-22T12:34:28,154 adding 'vermouth/gmx/__init__.py' 2022-12-22T12:34:28,158 adding 'vermouth/gmx/gro.py' 2022-12-22T12:34:28,162 adding 'vermouth/gmx/itp.py' 2022-12-22T12:34:28,168 adding 'vermouth/gmx/itp_read.py' 2022-12-22T12:34:28,175 adding 'vermouth/gmx/rtp.py' 2022-12-22T12:34:28,182 adding 'vermouth/graphing/grappa.py' 2022-12-22T12:34:28,186 adding 'vermouth/pdb/__init__.py' 2022-12-22T12:34:28,192 adding 'vermouth/pdb/pdb.py' 2022-12-22T12:34:28,197 adding 'vermouth/processors/__init__.py' 2022-12-22T12:34:28,201 adding 'vermouth/processors/add_molecule_edges.py' 2022-12-22T12:34:28,205 adding 'vermouth/processors/annotate_mut_mod.py' 2022-12-22T12:34:28,208 adding 'vermouth/processors/apply_posres.py' 2022-12-22T12:34:28,214 adding 'vermouth/processors/apply_rubber_band.py' 2022-12-22T12:34:28,217 adding 'vermouth/processors/attach_mass.py' 2022-12-22T12:34:28,220 adding 'vermouth/processors/average_beads.py' 2022-12-22T12:34:28,226 adding 'vermouth/processors/canonicalize_modifications.py' 2022-12-22T12:34:28,231 adding 'vermouth/processors/do_links.py' 2022-12-22T12:34:28,242 adding 'vermouth/processors/do_mapping.py' 2022-12-22T12:34:28,247 adding 'vermouth/processors/go_vs_includes.py' 2022-12-22T12:34:28,250 adding 'vermouth/processors/gro_reader.py' 2022-12-22T12:34:28,253 adding 'vermouth/processors/locate_charge_dummies.py' 2022-12-22T12:34:28,259 adding 'vermouth/processors/make_bonds.py' 2022-12-22T12:34:28,261 adding 'vermouth/processors/merge_all_molecules.py' 2022-12-22T12:34:28,264 adding 'vermouth/processors/merge_chains.py' 2022-12-22T12:34:28,268 adding 'vermouth/processors/name_moltype.py' 2022-12-22T12:34:28,270 adding 'vermouth/processors/pdb_reader.py' 2022-12-22T12:34:28,273 adding 'vermouth/processors/processor.py' 2022-12-22T12:34:28,276 adding 'vermouth/processors/quote.py' 2022-12-22T12:34:28,279 adding 'vermouth/processors/rename_modified_residues.py' 2022-12-22T12:34:28,287 adding 'vermouth/processors/repair_graph.py' 2022-12-22T12:34:28,290 adding 'vermouth/processors/set_molecule_meta.py' 2022-12-22T12:34:28,293 adding 'vermouth/processors/sort_molecule_atoms.py' 2022-12-22T12:34:28,296 adding 'vermouth/processors/tune_cystein_bridges.py' 2022-12-22T12:34:28,302 adding 'vermouth/tests/__init__.py' 2022-12-22T12:34:28,305 adding 'vermouth/tests/datafiles.py' 2022-12-22T12:34:28,308 adding 'vermouth/tests/helper_functions.py' 2022-12-22T12:34:28,312 adding 'vermouth/tests/molecule_strategies.py' 2022-12-22T12:34:28,315 adding 'vermouth/tests/test_add_molecule_edges.py' 2022-12-22T12:34:28,319 adding 'vermouth/tests/test_annotate_mut_mod.py' 2022-12-22T12:34:28,324 adding 'vermouth/tests/test_apply_rubber_band.py' 2022-12-22T12:34:28,328 adding 'vermouth/tests/test_average_beads.py' 2022-12-22T12:34:28,335 adding 'vermouth/tests/test_do_mapping.py' 2022-12-22T12:34:28,340 adding 'vermouth/tests/test_dssp.py' 2022-12-22T12:34:28,346 adding 'vermouth/tests/test_edge_tuning.py' 2022-12-22T12:34:28,355 adding 'vermouth/tests/test_ff_files.py' 2022-12-22T12:34:28,362 adding 'vermouth/tests/test_ffinput.py' 2022-12-22T12:34:28,366 adding 'vermouth/tests/test_file_writer.py' 2022-12-22T12:34:28,369 adding 'vermouth/tests/test_forcefield.py' 2022-12-22T12:34:28,373 adding 'vermouth/tests/test_geometry.py' 2022-12-22T12:34:28,376 adding 'vermouth/tests/test_go_vs_includes.py' 2022-12-22T12:34:28,380 adding 'vermouth/tests/test_graph_utils.py' 2022-12-22T12:34:28,385 adding 'vermouth/tests/test_grappa.py' 2022-12-22T12:34:28,391 adding 'vermouth/tests/test_ismags.py' 2022-12-22T12:34:28,396 adding 'vermouth/tests/test_itp_files.py' 2022-12-22T12:34:28,400 adding 'vermouth/tests/test_links.py' 2022-12-22T12:34:28,404 adding 'vermouth/tests/test_logging.py' 2022-12-22T12:34:28,408 adding 'vermouth/tests/test_make_bonds.py' 2022-12-22T12:34:28,414 adding 'vermouth/tests/test_map_input.py' 2022-12-22T12:34:28,419 adding 'vermouth/tests/test_map_parser.py' 2022-12-22T12:34:28,422 adding 'vermouth/tests/test_mapping_integrative.py' 2022-12-22T12:34:28,431 adding 'vermouth/tests/test_molecule.py' 2022-12-22T12:34:28,435 adding 'vermouth/tests/test_name_moltype.py' 2022-12-22T12:34:28,438 adding 'vermouth/tests/test_native_forcefield.py' 2022-12-22T12:34:28,442 adding 'vermouth/tests/test_ptm_detection.py' 2022-12-22T12:34:28,447 adding 'vermouth/tests/test_repair_graph.py' 2022-12-22T12:34:28,451 adding 'vermouth/tests/test_section_parser.py' 2022-12-22T12:34:28,454 adding 'vermouth/tests/test_selectors.py' 2022-12-22T12:34:28,457 adding 'vermouth/tests/test_set_molecule_meta.py' 2022-12-22T12:34:28,460 adding 'vermouth/tests/test_sort_molecule_atoms.py' 2022-12-22T12:34:28,463 adding 'vermouth/tests/test_tune_cystein_bridges.py' 2022-12-22T12:34:28,467 adding 'vermouth/tests/test_utils.py' 2022-12-22T12:34:28,470 adding 'vermouth/tests/test_version.py' 2022-12-22T12:34:28,525 adding 'vermouth/tests/data/1bta.pdb' 2022-12-22T12:34:28,580 adding 'vermouth/tests/data/1bta_mutated.pdb' 2022-12-22T12:34:28,743 adding 'vermouth/tests/data/2QWO.pdb' 2022-12-22T12:34:29,107 adding 'vermouth/tests/data/2dn2.pdb' 2022-12-22T12:34:30,443 adding 'vermouth/tests/data/6E8W.pdb' 2022-12-22T12:34:30,513 adding 'vermouth/tests/data/ala5.pdb' 2022-12-22T12:34:30,516 adding 'vermouth/tests/data/ala5_cg.pdb' 2022-12-22T12:34:30,524 adding 'vermouth/tests/data/dna-short.pdb' 2022-12-22T12:34:30,532 adding 'vermouth/tests/data/dssp_1bta.ssd' 2022-12-22T12:34:30,535 adding 'vermouth/tests/data/heme.pdb' 2022-12-22T12:34:30,539 adding 'vermouth/tests/data/tri_alanine.pdb' 2022-12-22T12:34:30,546 adding 'vermouth/tests/data/force_fields/martini-test/aminoacids.ff' 2022-12-22T12:34:30,551 adding 'vermouth/tests/data/force_fields/pepplane/ala.ff' 2022-12-22T12:34:30,553 adding 'vermouth/tests/data/force_fields/pepplane/general.ff' 2022-12-22T12:34:30,556 adding 'vermouth/tests/data/force_fields/pepplane/modifications.ff' 2022-12-22T12:34:30,565 adding 'vermouth/tests/data/force_fields/universal-test/aminoacids.rtp' 2022-12-22T12:34:30,568 adding 'vermouth/tests/data/force_fields/universal-test/modifications.ff' 2022-12-22T12:34:30,574 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/README' 2022-12-22T12:34:30,577 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/aa.pdb' 2022-12-22T12:34:30,581 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/cg.pdb' 2022-12-22T12:34:30,583 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/citation' 2022-12-22T12:34:30,586 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/command' 2022-12-22T12:34:30,589 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/molecule_0.itp' 2022-12-22T12:34:30,591 adding 'vermouth/tests/data/integration_tests/tier-0/dipro-termini/martinize2/topol.top' 2022-12-22T12:34:30,595 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/README' 2022-12-22T12:34:30,608 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/aa.pdb' 2022-12-22T12:34:30,614 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/cg.pdb' 2022-12-22T12:34:30,619 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/chain_A.ssd' 2022-12-22T12:34:30,622 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/citation' 2022-12-22T12:34:30,624 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/command' 2022-12-22T12:34:30,628 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/molecule_0.itp' 2022-12-22T12:34:30,631 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/screen.output' 2022-12-22T12:34:30,633 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein1_betasheet/martinize2/topol.top' 2022-12-22T12:34:30,637 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/README' 2022-12-22T12:34:30,658 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/aa.pdb' 2022-12-22T12:34:30,666 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/cg.pdb' 2022-12-22T12:34:30,671 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/chain_A.ssd' 2022-12-22T12:34:30,674 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/citation' 2022-12-22T12:34:30,677 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/command' 2022-12-22T12:34:30,683 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/molecule_0.itp' 2022-12-22T12:34:30,687 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/screen.output' 2022-12-22T12:34:30,690 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein2_helix/martinize2/topol.top' 2022-12-22T12:34:30,694 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/README' 2022-12-22T12:34:30,704 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/aa.pdb' 2022-12-22T12:34:30,710 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/cg.pdb' 2022-12-22T12:34:30,715 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/chain_A.ssd' 2022-12-22T12:34:30,718 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/citation' 2022-12-22T12:34:30,721 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/command' 2022-12-22T12:34:30,725 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/molecule_0.itp' 2022-12-22T12:34:30,729 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/screen.output' 2022-12-22T12:34:30,732 adding 'vermouth/tests/data/integration_tests/tier-0/mini-protein3_trp-cage/martinize2/topol.top' 2022-12-22T12:34:30,738 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/README' 2022-12-22T12:34:30,896 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/aa.pdb' 2022-12-22T12:34:30,929 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.pdb' 2022-12-22T12:34:30,934 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/cg.top' 2022-12-22T12:34:30,960 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/chain_.ssd' 2022-12-22T12:34:30,964 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/citation' 2022-12-22T12:34:30,967 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/command' 2022-12-22T12:34:31,017 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/molecule_0.itp' 2022-12-22T12:34:31,024 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5/martinize2/screen.output' 2022-12-22T12:34:31,028 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/README' 2022-12-22T12:34:31,186 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/aa.pdb' 2022-12-22T12:34:31,219 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.pdb' 2022-12-22T12:34:31,223 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/cg.top' 2022-12-22T12:34:31,249 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/chain_.ssd' 2022-12-22T12:34:31,253 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/citation' 2022-12-22T12:34:31,256 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/command' 2022-12-22T12:34:31,307 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/molecule_0.itp' 2022-12-22T12:34:31,313 adding 'vermouth/tests/data/integration_tests/tier-1/1mj5-charmm/martinize2/screen.output' 2022-12-22T12:34:31,336 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/3i40.pdb' 2022-12-22T12:34:31,341 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/README' 2022-12-22T12:34:31,348 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.pdb' 2022-12-22T12:34:31,352 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/cg.top' 2022-12-22T12:34:31,358 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_A.ssd' 2022-12-22T12:34:31,364 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/chain_C.ssd' 2022-12-22T12:34:31,367 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/citation' 2022-12-22T12:34:31,369 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/command' 2022-12-22T12:34:31,377 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/insulin_dimer.itp' 2022-12-22T12:34:31,384 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/molecule_0.itp' 2022-12-22T12:34:31,388 adding 'vermouth/tests/data/integration_tests/tier-1/3i40/martinize2/screen.output' 2022-12-22T12:34:31,459 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/6LFO_gap.pdb' 2022-12-22T12:34:31,465 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/README' 2022-12-22T12:34:31,486 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.pdb' 2022-12-22T12:34:31,489 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/cg.top' 2022-12-22T12:34:31,494 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/chain_R.ssd' 2022-12-22T12:34:31,497 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/citation' 2022-12-22T12:34:31,500 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/command' 2022-12-22T12:34:31,540 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/molecule_0.itp' 2022-12-22T12:34:31,546 adding 'vermouth/tests/data/integration_tests/tier-1/6LFO_gap/martinize2/screen.output' 2022-12-22T12:34:31,550 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/README' 2022-12-22T12:34:31,571 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/aa.pdb' 2022-12-22T12:34:31,579 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.pdb' 2022-12-22T12:34:31,582 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/cg.top' 2022-12-22T12:34:31,587 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/chain_A.ssd' 2022-12-22T12:34:31,590 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/citation' 2022-12-22T12:34:31,592 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/command' 2022-12-22T12:34:31,600 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/molecule_0.itp' 2022-12-22T12:34:31,603 adding 'vermouth/tests/data/integration_tests/tier-1/EN_chain/martinize2/screen.output' 2022-12-22T12:34:31,607 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/README' 2022-12-22T12:34:31,628 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/aa.pdb' 2022-12-22T12:34:31,636 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.pdb' 2022-12-22T12:34:31,639 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/cg.top' 2022-12-22T12:34:31,644 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/chain_A.ssd' 2022-12-22T12:34:31,647 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/citation' 2022-12-22T12:34:31,650 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/command' 2022-12-22T12:34:31,657 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/molecule_0.itp' 2022-12-22T12:34:31,660 adding 'vermouth/tests/data/integration_tests/tier-1/EN_region/martinize2/screen.output' 2022-12-22T12:34:31,664 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/README' 2022-12-22T12:34:31,688 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/aa.pdb' 2022-12-22T12:34:31,696 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/cg.pdb' 2022-12-22T12:34:31,702 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/chain_A.ssd' 2022-12-22T12:34:31,704 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/citation' 2022-12-22T12:34:31,707 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/command' 2022-12-22T12:34:31,715 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/molecule_0.itp' 2022-12-22T12:34:31,719 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/screen.output' 2022-12-22T12:34:31,722 adding 'vermouth/tests/data/integration_tests/tier-1/bpti/martinize2/topol.top' 2022-12-22T12:34:31,726 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/README' 2022-12-22T12:34:31,775 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/aa.pdb' 2022-12-22T12:34:31,789 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/cg.pdb' 2022-12-22T12:34:31,800 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/chain_A.ssd' 2022-12-22T12:34:31,803 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/citation' 2022-12-22T12:34:31,806 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/command' 2022-12-22T12:34:31,824 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/molecule_0.itp' 2022-12-22T12:34:31,830 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/screen.output' 2022-12-22T12:34:31,849 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/test.itp' 2022-12-22T12:34:31,853 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme/martinize2/topol.top' 2022-12-22T12:34:31,856 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/README' 2022-12-22T12:34:31,906 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/aa.pdb' 2022-12-22T12:34:31,921 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/cg.pdb' 2022-12-22T12:34:31,932 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/chain_A.ssd' 2022-12-22T12:34:31,935 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/citation' 2022-12-22T12:34:31,937 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/command' 2022-12-22T12:34:31,958 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/molecule_0.itp' 2022-12-22T12:34:31,962 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/screen.output' 2022-12-22T12:34:31,981 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/test.itp' 2022-12-22T12:34:31,984 adding 'vermouth/tests/data/integration_tests/tier-1/lysozyme_prot/martinize2/topol.top' 2022-12-22T12:34:31,988 adding 'vermouth/tests/data/integration_tests/tier-1/villin/README' 2022-12-22T12:34:31,998 adding 'vermouth/tests/data/integration_tests/tier-1/villin/aa.pdb' 2022-12-22T12:34:32,004 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/cg.pdb' 2022-12-22T12:34:32,007 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/citation' 2022-12-22T12:34:32,009 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/command' 2022-12-22T12:34:32,014 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/molecule_0.itp' 2022-12-22T12:34:32,017 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/screen.output' 2022-12-22T12:34:32,019 adding 'vermouth/tests/data/integration_tests/tier-1/villin/martinize2/topol.top' 2022-12-22T12:34:32,025 adding 'vermouth/tests/data/mappings/universal-test/martini-test/ser.mapping' 2022-12-22T12:34:32,029 adding 'vermouth/tests/data/mappings/universal-test/pepplane/ala.mapping' 2022-12-22T12:34:32,032 adding 'vermouth/tests/data/mappings/universal-test/pepplane/modifications.mapping' 2022-12-22T12:34:32,039 adding 'vermouth/tests/gmx/test_gro.py' 2022-12-22T12:34:32,043 adding 'vermouth/tests/gmx/test_itp.py' 2022-12-22T12:34:32,047 adding 'vermouth/tests/integration_tests/__init__.py' 2022-12-22T12:34:32,051 adding 'vermouth/tests/integration_tests/test_integration.py' 2022-12-22T12:34:32,056 adding 'vermouth/tests/pdb/test_read_pdb.py' 2022-12-22T12:34:32,060 adding 'vermouth/tests/pdb/test_write_pdb.py' 2022-12-22T12:34:32,073 adding 'vermouth-0.9.1.data/scripts/martinize2' 2022-12-22T12:34:32,081 adding 'vermouth-0.9.1.dist-info/LICENSE' 2022-12-22T12:34:32,085 adding 'vermouth-0.9.1.dist-info/METADATA' 2022-12-22T12:34:32,087 adding 'vermouth-0.9.1.dist-info/WHEEL' 2022-12-22T12:34:32,089 adding 'vermouth-0.9.1.dist-info/pbr.json' 2022-12-22T12:34:32,091 adding 'vermouth-0.9.1.dist-info/top_level.txt' 2022-12-22T12:34:32,114 adding 'vermouth-0.9.1.dist-info/RECORD' 2022-12-22T12:34:32,207 removing build/bdist.linux-armv7l/wheel 2022-12-22T12:34:32,514 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.data.mappings' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:32,515 !! 2022-12-22T12:34:32,516 ############################ 2022-12-22T12:34:32,516 # Package would be ignored # 2022-12-22T12:34:32,516 ############################ 2022-12-22T12:34:32,517 Python recognizes 'vermouth.tests.data.mappings' as an importable package, 2022-12-22T12:34:32,517 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:32,518 'vermouth.tests.data.mappings' has been automatically added to the distribution only 2022-12-22T12:34:32,518 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:32,519 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:32,519 Please make sure that 'vermouth.tests.data.mappings' is included as a package by using 2022-12-22T12:34:32,519 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:32,520 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:32,520 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:32,521 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:32,521 documentation page. 2022-12-22T12:34:32,522 !! 2022-12-22T12:34:32,523 check.warn(importable) 2022-12-22T12:34:32,523 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.gmx' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:32,523 !! 2022-12-22T12:34:32,524 ############################ 2022-12-22T12:34:32,525 # Package would be ignored # 2022-12-22T12:34:32,525 ############################ 2022-12-22T12:34:32,525 Python recognizes 'vermouth.tests.gmx' as an importable package, 2022-12-22T12:34:32,526 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:32,527 'vermouth.tests.gmx' has been automatically added to the distribution only 2022-12-22T12:34:32,527 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:32,527 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:32,528 Please make sure that 'vermouth.tests.gmx' is included as a package by using 2022-12-22T12:34:32,529 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:32,529 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:32,529 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:32,530 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:32,531 documentation page. 2022-12-22T12:34:32,532 !! 2022-12-22T12:34:32,533 check.warn(importable) 2022-12-22T12:34:32,533 /tmp/pip-build-env-n7mzsamm/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'vermouth.tests.pdb' as data is deprecated, please list it in `packages`. 2022-12-22T12:34:32,533 !! 2022-12-22T12:34:32,535 ############################ 2022-12-22T12:34:32,535 # Package would be ignored # 2022-12-22T12:34:32,535 ############################ 2022-12-22T12:34:32,536 Python recognizes 'vermouth.tests.pdb' as an importable package, 2022-12-22T12:34:32,536 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T12:34:32,537 'vermouth.tests.pdb' has been automatically added to the distribution only 2022-12-22T12:34:32,537 because it may contain data files, but this behavior is likely to change 2022-12-22T12:34:32,538 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T12:34:32,539 Please make sure that 'vermouth.tests.pdb' is included as a package by using 2022-12-22T12:34:32,539 the `packages` configuration field or the proper discovery methods 2022-12-22T12:34:32,540 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T12:34:32,540 instead of `find_packages(...)`/`find:`). 2022-12-22T12:34:32,541 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T12:34:32,541 documentation page. 2022-12-22T12:34:32,543 !! 2022-12-22T12:34:32,543 check.warn(importable) 2022-12-22T12:34:32,768 Building wheel for vermouth (pyproject.toml): finished with status 'done' 2022-12-22T12:34:32,929 Created wheel for vermouth: filename=vermouth-0.9.1-py2.py3-none-any.whl size=2658075 sha256=d081aae0aa5c3bf9d4d2af5221874610db58acfca8080f5cb45f3e76d4624bd8 2022-12-22T12:34:32,931 Stored in directory: /tmp/pip-ephem-wheel-cache-tkgoi5rz/wheels/f1/bb/f8/1d4db4c00d77d7ff113d2153deea2022a2a2ec2e306035e0d1 2022-12-22T12:34:33,005 Successfully built vermouth 2022-12-22T12:34:33,211 Removed build tracker: '/tmp/pip-build-tracker-pzt4njop'