2022-12-22T13:52:47,340 Created temporary directory: /tmp/pip-ephem-wheel-cache-4nyrjq39 2022-12-22T13:52:47,345 Created temporary directory: /tmp/pip-build-tracker-f5s608_e 2022-12-22T13:52:47,346 Initialized build tracking at /tmp/pip-build-tracker-f5s608_e 2022-12-22T13:52:47,346 Created build tracker: /tmp/pip-build-tracker-f5s608_e 2022-12-22T13:52:47,347 Entered build tracker: /tmp/pip-build-tracker-f5s608_e 2022-12-22T13:52:47,348 Created temporary directory: /tmp/pip-wheel-4wn_fgu5 2022-12-22T13:52:47,356 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-22T13:52:47,361 Created temporary directory: /tmp/pip-ephem-wheel-cache-uc3qzmod 2022-12-22T13:52:47,412 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-22T13:52:47,419 2 location(s) to search for versions of ngpiris: 2022-12-22T13:52:47,419 * https://pypi.org/simple/ngpiris/ 2022-12-22T13:52:47,419 * https://www.piwheels.org/simple/ngpiris/ 2022-12-22T13:52:47,420 Fetching project page and analyzing links: https://pypi.org/simple/ngpiris/ 2022-12-22T13:52:47,421 Getting page https://pypi.org/simple/ngpiris/ 2022-12-22T13:52:47,425 Found index url https://pypi.org/simple 2022-12-22T13:52:47,652 Fetched page https://pypi.org/simple/ngpiris/ as application/vnd.pypi.simple.v1+json 2022-12-22T13:52:47,664 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/4d/6e/f08727e739b7a54f7449ab02313eb50cabb2a795c92f253cf17f18c75617/NGPIris-3.0.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,665 Found link https://files.pythonhosted.org/packages/78/19/bf5cc9159ce9a268be187a5bddf2544732e150c403caaba9bb72031a6d38/NGPIris-3.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.0 2022-12-22T13:52:47,666 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a1/28/41151a5e1b5f39a800959d061e7f95eaa000ec0f590194b904e8174d850b/NGPIris-3.0.1-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,667 Found link https://files.pythonhosted.org/packages/6f/3e/43198b86cf36f8cb67292f40fde6f413df7b7a3712292985f0c9825e685b/NGPIris-3.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.1 2022-12-22T13:52:47,668 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/19/f3/6b1617929c5001e2cff89989a25184e8027a613f0999f263c987a07ca753/NGPIris-3.0.2-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,669 Found link https://files.pythonhosted.org/packages/bb/d2/aad6af2472bf44ece65bf403e0a7c9b40f7e899967e196fd53f26825b4b8/NGPIris-3.0.2.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.2 2022-12-22T13:52:47,670 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/ae/54/d7573467205bc7e14294a954def7f8c2194be848c6324ddfc1698b34017b/NGPIris-3.0.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,672 Found link https://files.pythonhosted.org/packages/b3/61/71f9236acb7b62ce74a0bb298ebdf34cf03792730a70f1aef8522ad9b6b4/NGPIris-3.0.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.0.3 2022-12-22T13:52:47,672 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/a5/9a/addadfcc2e15874ed368c96636b0364efb4c66d03325cdf759e846bf7535/NGPIris-3.2.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,674 Found link https://files.pythonhosted.org/packages/54/e0/4c980696e9d9ba08080acdb2fd9c10c5e2f91a9e9c637c05d16445d3885d/NGPIris-3.2.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.2.0 2022-12-22T13:52:47,674 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/e3/7c/f979667a67fcb64cc5f95350857bd8e23f41737c5258bd7adda601a6bcfd/NGPIris-3.4.0-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,676 Found link https://files.pythonhosted.org/packages/76/a0/0588bac324aa12b00f07b6f9908d0bbfa93ec2961cfaf43a25d2b03f417a/NGPIris-3.4.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.0 2022-12-22T13:52:47,676 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/48/39/46d2cc57267af9da79f26acf2fadb712b2241080ff7f05e10919b94e2e9e/NGPIris-3.4.3-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,678 Found link https://files.pythonhosted.org/packages/58/6c/b015ab5bc06ec4d827cde658e67d16da46f16f91a1c645ea93a2391e4801/NGPIris-3.4.3.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.3 2022-12-22T13:52:47,678 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/31/90/cc8020a6d267339b1dcfa92d7c2290871e5affa81ac3eeca7983ae0ea696/NGPIris-3.4.5-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,680 Found link https://files.pythonhosted.org/packages/d3/12/938ecca558cbab1d59d09d84ebcb3eed332b393f765729f0a17663e15e47/NGPIris-3.4.5.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.5 2022-12-22T13:52:47,680 Skipping link: No binaries permitted for ngpiris: https://files.pythonhosted.org/packages/06/d6/34055477d5dbd32c3bf419f4f1aa6fff245ba21ba57c86b6914894968fcd/NGPIris-3.4.8-py3-none-any.whl (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,682 Found link https://files.pythonhosted.org/packages/f7/db/171f09ab48499129d6f0f4e6d75149dbca99550b4822a99848414d1235c7/NGPIris-3.4.8.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 3.4.8 2022-12-22T13:52:47,683 Found link https://files.pythonhosted.org/packages/88/e1/77c334e7c72936f168c8003e80dd7c34359959379aac4a220eb9cfc42be0/NGPIris-4.0.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.0 2022-12-22T13:52:47,684 Found link https://files.pythonhosted.org/packages/a8/0a/5be2fcffc753c011fb7ca46b4b85885fcf0ce84016185ad5d0fdd0e9d346/NGPIris-4.0.1.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.0.1 2022-12-22T13:52:47,686 Found link https://files.pythonhosted.org/packages/11/ea/29ecef9a200c7244bd0ecb4178bf31278e500681d3ed2234f4d1b394a727/NGPIris-4.1.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.1.0 2022-12-22T13:52:47,687 Found link https://files.pythonhosted.org/packages/be/64/8d6d5163a5e6379f0975e8a7a5d7fea1b308329cf04defa87541a5144d40/NGPIris-4.2.0.tar.gz (from https://pypi.org/simple/ngpiris/) (requires-python:>=3.6), version: 4.2.0 2022-12-22T13:52:47,688 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngpiris/ 2022-12-22T13:52:47,689 Getting page https://www.piwheels.org/simple/ngpiris/ 2022-12-22T13:52:47,691 Found index url https://www.piwheels.org/simple 2022-12-22T13:52:47,911 Fetched page https://www.piwheels.org/simple/ngpiris/ as text/html 2022-12-22T13:52:47,922 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.1.0-py3-none-any.whl#sha256=6d3d7a5402690c39b5c4c62436861135cf1debd77396302b5ff7ab26c19db4ae (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,923 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.0.1-py3-none-any.whl#sha256=27f4612d2b8e55c501d1b0d184db6051438e11e1c34a8c7ce802f5198d07430d (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,923 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-4.0.0-py3-none-any.whl#sha256=c2c248431653bc75ec4b9309e8147c0dc95a7f691a36cfcab6476d56d07b9b93 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,924 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.8-py3-none-any.whl#sha256=6d5c467d91f4a078774067564ee465935ff2fdfed4110db75eb5ade851138b1e (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,925 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.5-py3-none-any.whl#sha256=25fe84f5af43720363d8235d6cb9b0f4300220f95e41ccd0d4712e9d9901874c (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,925 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.3-py3-none-any.whl#sha256=bcafb399a8ea27aa1ffd6b4ecad46be12868946bbccb4d65ac190ddb24ff94f1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,926 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.4.0-py3-none-any.whl#sha256=a6ebd0e230567c71827dc2d3c2cf00fb1a9ecc0d9e88d0f2f72d381c9b714b74 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,926 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.2.0-py3-none-any.whl#sha256=570205a5723cadf5283b876e9660252c2f2aeee83a926924290b1b405b5063b2 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,927 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.3-py3-none-any.whl#sha256=7f5bdd637e2f76d2556e053a6419f22bcf55f1c701f85a25f2d6d2242316d5d1 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,927 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.2-py3-none-any.whl#sha256=c641248d1cd745848e1e17172315e26d9a5b1f285d82e00a13c828d2df52a42b (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,928 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.1-py3-none-any.whl#sha256=0e81c3cfead2a48f830959ae216820ff0fbca5855dbcf688bd2f48315be72860 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,928 Skipping link: No binaries permitted for ngpiris: https://www.piwheels.org/simple/ngpiris/NGPIris-3.0.0-py3-none-any.whl#sha256=c1e03dfb87bc818cd85e79c209f4472232fd2ebfff1ba7dc03bae3cdaf9bd233 (from https://www.piwheels.org/simple/ngpiris/) (requires-python:>=3.6) 2022-12-22T13:52:47,929 Skipping link: not a file: https://www.piwheels.org/simple/ngpiris/ 2022-12-22T13:52:47,929 Skipping link: not a file: https://pypi.org/simple/ngpiris/ 2022-12-22T13:52:47,970 Given no hashes to check 1 links for project 'ngpiris': discarding no candidates 2022-12-22T13:52:48,000 Collecting ngpiris==4.2.0 2022-12-22T13:52:48,004 Created temporary directory: /tmp/pip-unpack-3iz199_d 2022-12-22T13:52:48,239 Downloading NGPIris-4.2.0.tar.gz (71 kB) 2022-12-22T13:52:48,476 Added ngpiris==4.2.0 from https://files.pythonhosted.org/packages/be/64/8d6d5163a5e6379f0975e8a7a5d7fea1b308329cf04defa87541a5144d40/NGPIris-4.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-f5s608_e' 2022-12-22T13:52:48,485 Created temporary directory: /tmp/pip-build-env-am34xoos 2022-12-22T13:52:48,497 Installing build dependencies: started 2022-12-22T13:52:48,499 Running command pip subprocess to install build dependencies 2022-12-22T13:52:51,213 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2022-12-22T13:52:52,006 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2022-12-22T13:52:52,059 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2022-12-22T13:52:55,903 Collecting setuptools>=42 2022-12-22T13:52:56,166 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2022-12-22T13:52:56,788 Collecting wheel 2022-12-22T13:52:56,823 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2022-12-22T13:53:02,236 Installing collected packages: wheel, setuptools 2022-12-22T13:53:02,526 Creating /tmp/pip-build-env-am34xoos/overlay/bin 2022-12-22T13:53:02,531 changing mode of /tmp/pip-build-env-am34xoos/overlay/bin/wheel to 755 2022-12-22T13:53:07,342 Successfully installed setuptools-65.6.3 wheel-0.38.4 2022-12-22T13:53:07,374 [notice] A new release of pip available: 22.3 -> 22.3.1 2022-12-22T13:53:07,374 [notice] To update, run: python3 -m pip install --upgrade pip 2022-12-22T13:53:07,800 Installing build dependencies: finished with status 'done' 2022-12-22T13:53:07,812 Getting requirements to build wheel: started 2022-12-22T13:53:07,814 Running command Getting requirements to build wheel 2022-12-22T13:53:10,268 running egg_info 2022-12-22T13:53:10,281 writing NGPIris.egg-info/PKG-INFO 2022-12-22T13:53:10,285 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-12-22T13:53:10,289 writing entry points to NGPIris.egg-info/entry_points.txt 2022-12-22T13:53:10,292 writing requirements to NGPIris.egg-info/requires.txt 2022-12-22T13:53:10,295 writing top-level names to NGPIris.egg-info/top_level.txt 2022-12-22T13:53:10,337 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:10,343 reading manifest template 'MANIFEST.in' 2022-12-22T13:53:10,346 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:10,347 !! 2022-12-22T13:53:10,348 ########################################################################## 2022-12-22T13:53:10,348 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:10,348 ########################################################################## 2022-12-22T13:53:10,349 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:10,350 `requires-python = '>=3.6'` 2022-12-22T13:53:10,350 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:10,351 consider this value unless 'requires-python' is listed as `dynamic`. 2022-12-22T13:53:10,351 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:10,352 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:10,352 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:10,353 follow strictly the standard. 2022-12-22T13:53:10,353 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-12-22T13:53:10,354 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:10,354 configuration. 2022-12-22T13:53:10,355 !! 2022-12-22T13:53:10,356 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:10,356 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:10,356 !! 2022-12-22T13:53:10,357 ########################################################################## 2022-12-22T13:53:10,358 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:10,358 ########################################################################## 2022-12-22T13:53:10,359 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:10,359 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-12-22T13:53:10,360 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:10,360 consider this value unless 'classifiers' is listed as `dynamic`. 2022-12-22T13:53:10,361 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:10,361 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:10,362 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:10,362 follow strictly the standard. 2022-12-22T13:53:10,362 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-12-22T13:53:10,363 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:10,363 configuration. 2022-12-22T13:53:10,364 !! 2022-12-22T13:53:10,365 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:10,365 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:10,365 !! 2022-12-22T13:53:10,366 ########################################################################## 2022-12-22T13:53:10,366 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:10,367 ########################################################################## 2022-12-22T13:53:10,367 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:10,368 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-12-22T13:53:10,369 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:10,369 consider this value unless 'urls' is listed as `dynamic`. 2022-12-22T13:53:10,370 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:10,371 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:10,371 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:10,372 follow strictly the standard. 2022-12-22T13:53:10,372 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-12-22T13:53:10,373 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:10,373 configuration. 2022-12-22T13:53:10,374 !! 2022-12-22T13:53:10,375 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:10,375 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:10,376 !! 2022-12-22T13:53:10,377 ########################################################################## 2022-12-22T13:53:10,378 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:10,378 ########################################################################## 2022-12-22T13:53:10,379 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:10,380 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-12-22T13:53:10,381 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:10,382 consider this value unless 'entry-points' is listed as `dynamic`. 2022-12-22T13:53:10,382 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:10,383 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:10,384 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:10,384 follow strictly the standard. 2022-12-22T13:53:10,385 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-12-22T13:53:10,385 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:10,386 configuration. 2022-12-22T13:53:10,387 !! 2022-12-22T13:53:10,388 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:10,388 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:10,389 !! 2022-12-22T13:53:10,390 ########################################################################## 2022-12-22T13:53:10,390 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:10,391 ########################################################################## 2022-12-22T13:53:10,392 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:10,393 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-12-22T13:53:10,394 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:10,394 consider this value unless 'dependencies' is listed as `dynamic`. 2022-12-22T13:53:10,395 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:10,396 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:10,396 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:10,396 follow strictly the standard. 2022-12-22T13:53:10,397 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-12-22T13:53:10,398 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:10,398 configuration. 2022-12-22T13:53:10,399 !! 2022-12-22T13:53:10,400 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:10,400 warning: no files found matching 'freeze.txt' 2022-12-22T13:53:10,401 warning: no files found matching 'profile.json' 2022-12-22T13:53:10,401 adding license file 'LICENSE' 2022-12-22T13:53:10,402 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:10,606 Getting requirements to build wheel: finished with status 'done' 2022-12-22T13:53:10,626 Created temporary directory: /tmp/pip-modern-metadata-gdscil0_ 2022-12-22T13:53:10,632 Preparing metadata (pyproject.toml): started 2022-12-22T13:53:10,634 Running command Preparing metadata (pyproject.toml) 2022-12-22T13:53:12,930 running dist_info 2022-12-22T13:53:12,944 creating /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info 2022-12-22T13:53:12,953 writing /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/PKG-INFO 2022-12-22T13:53:12,959 writing dependency_links to /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/dependency_links.txt 2022-12-22T13:53:12,964 writing entry points to /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/entry_points.txt 2022-12-22T13:53:12,968 writing requirements to /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/requires.txt 2022-12-22T13:53:12,971 writing top-level names to /tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/top_level.txt 2022-12-22T13:53:12,974 writing manifest file '/tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:13,015 reading manifest file '/tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:13,023 reading manifest template 'MANIFEST.in' 2022-12-22T13:53:13,026 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:13,026 !! 2022-12-22T13:53:13,027 ########################################################################## 2022-12-22T13:53:13,028 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:13,028 ########################################################################## 2022-12-22T13:53:13,028 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:13,029 `requires-python = '>=3.6'` 2022-12-22T13:53:13,030 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:13,030 consider this value unless 'requires-python' is listed as `dynamic`. 2022-12-22T13:53:13,031 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:13,031 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:13,031 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:13,032 follow strictly the standard. 2022-12-22T13:53:13,032 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-12-22T13:53:13,033 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:13,033 configuration. 2022-12-22T13:53:13,034 !! 2022-12-22T13:53:13,035 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:13,035 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:13,035 !! 2022-12-22T13:53:13,036 ########################################################################## 2022-12-22T13:53:13,037 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:13,037 ########################################################################## 2022-12-22T13:53:13,038 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:13,038 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-12-22T13:53:13,039 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:13,039 consider this value unless 'classifiers' is listed as `dynamic`. 2022-12-22T13:53:13,040 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:13,040 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:13,041 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:13,041 follow strictly the standard. 2022-12-22T13:53:13,042 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-12-22T13:53:13,042 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:13,042 configuration. 2022-12-22T13:53:13,044 !! 2022-12-22T13:53:13,044 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:13,044 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:13,045 !! 2022-12-22T13:53:13,046 ########################################################################## 2022-12-22T13:53:13,046 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:13,046 ########################################################################## 2022-12-22T13:53:13,047 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:13,048 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-12-22T13:53:13,048 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:13,048 consider this value unless 'urls' is listed as `dynamic`. 2022-12-22T13:53:13,049 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:13,050 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:13,050 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:13,050 follow strictly the standard. 2022-12-22T13:53:13,051 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-12-22T13:53:13,051 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:13,051 configuration. 2022-12-22T13:53:13,052 !! 2022-12-22T13:53:13,053 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:13,053 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:13,054 !! 2022-12-22T13:53:13,055 ########################################################################## 2022-12-22T13:53:13,055 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:13,055 ########################################################################## 2022-12-22T13:53:13,056 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:13,057 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-12-22T13:53:13,057 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:13,058 consider this value unless 'entry-points' is listed as `dynamic`. 2022-12-22T13:53:13,058 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:13,059 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:13,059 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:13,059 follow strictly the standard. 2022-12-22T13:53:13,060 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-12-22T13:53:13,060 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:13,061 configuration. 2022-12-22T13:53:13,061 !! 2022-12-22T13:53:13,062 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:13,062 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:13,063 !! 2022-12-22T13:53:13,064 ########################################################################## 2022-12-22T13:53:13,064 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:13,064 ########################################################################## 2022-12-22T13:53:13,065 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:13,065 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-12-22T13:53:13,066 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:13,066 consider this value unless 'dependencies' is listed as `dynamic`. 2022-12-22T13:53:13,067 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:13,068 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:13,068 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:13,068 follow strictly the standard. 2022-12-22T13:53:13,069 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-12-22T13:53:13,069 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:13,069 configuration. 2022-12-22T13:53:13,070 !! 2022-12-22T13:53:13,071 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:13,071 warning: no files found matching 'freeze.txt' 2022-12-22T13:53:13,072 warning: no files found matching 'profile.json' 2022-12-22T13:53:13,072 adding license file 'LICENSE' 2022-12-22T13:53:13,072 writing manifest file '/tmp/pip-modern-metadata-gdscil0_/NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:13,073 creating '/tmp/pip-modern-metadata-gdscil0_/NGPIris-4.2.0.dist-info' 2022-12-22T13:53:13,378 Preparing metadata (pyproject.toml): finished with status 'done' 2022-12-22T13:53:13,394 Source in /tmp/pip-wheel-4wn_fgu5/ngpiris_9b7e738df78c4279a19baa277f41f86a has version 4.2.0, which satisfies requirement ngpiris==4.2.0 from https://files.pythonhosted.org/packages/be/64/8d6d5163a5e6379f0975e8a7a5d7fea1b308329cf04defa87541a5144d40/NGPIris-4.2.0.tar.gz 2022-12-22T13:53:13,396 Removed ngpiris==4.2.0 from https://files.pythonhosted.org/packages/be/64/8d6d5163a5e6379f0975e8a7a5d7fea1b308329cf04defa87541a5144d40/NGPIris-4.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-f5s608_e' 2022-12-22T13:53:13,410 Created temporary directory: /tmp/pip-unpack-2n5sqmui 2022-12-22T13:53:13,411 Building wheels for collected packages: ngpiris 2022-12-22T13:53:13,420 Created temporary directory: /tmp/pip-wheel-ngmg19lp 2022-12-22T13:53:13,420 Destination directory: /tmp/pip-wheel-ngmg19lp 2022-12-22T13:53:13,425 Building wheel for ngpiris (pyproject.toml): started 2022-12-22T13:53:13,427 Running command Building wheel for ngpiris (pyproject.toml) 2022-12-22T13:53:15,637 running bdist_wheel 2022-12-22T13:53:15,668 running build 2022-12-22T13:53:15,668 running build_py 2022-12-22T13:53:15,680 creating build 2022-12-22T13:53:15,681 creating build/lib 2022-12-22T13:53:15,682 creating build/lib/NGPIris 2022-12-22T13:53:15,684 copying NGPIris/__init__.py -> build/lib/NGPIris 2022-12-22T13:53:15,689 creating build/lib/tests 2022-12-22T13:53:15,691 copying tests/__init__.py -> build/lib/tests 2022-12-22T13:53:15,694 copying tests/test_cmds.py -> build/lib/tests 2022-12-22T13:53:15,698 copying tests/test_hcp.py -> build/lib/tests 2022-12-22T13:53:15,703 creating build/lib/NGPIris/hcp 2022-12-22T13:53:15,705 copying NGPIris/hcp/__init__.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,709 copying NGPIris/hcp/config.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,712 copying NGPIris/hcp/interactive.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,717 copying NGPIris/hcp/errors.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,720 copying NGPIris/hcp/helpers.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,724 copying NGPIris/hcp/hcp.py -> build/lib/NGPIris/hcp 2022-12-22T13:53:15,729 creating build/lib/NGPIris/hci 2022-12-22T13:53:15,731 copying NGPIris/hci/__init__.py -> build/lib/NGPIris/hci 2022-12-22T13:53:15,735 copying NGPIris/hci/hci.py -> build/lib/NGPIris/hci 2022-12-22T13:53:15,740 creating build/lib/NGPIris/preproc 2022-12-22T13:53:15,741 copying NGPIris/preproc/__init__.py -> build/lib/NGPIris/preproc 2022-12-22T13:53:15,744 copying NGPIris/preproc/preproc.py -> build/lib/NGPIris/preproc 2022-12-22T13:53:15,750 creating build/lib/NGPIris/cli 2022-12-22T13:53:15,751 copying NGPIris/cli/__init__.py -> build/lib/NGPIris/cli 2022-12-22T13:53:15,755 copying NGPIris/cli/base.py -> build/lib/NGPIris/cli 2022-12-22T13:53:15,758 copying NGPIris/cli/utils.py -> build/lib/NGPIris/cli 2022-12-22T13:53:15,762 copying NGPIris/cli/functions.py -> build/lib/NGPIris/cli 2022-12-22T13:53:15,765 running egg_info 2022-12-22T13:53:15,786 writing NGPIris.egg-info/PKG-INFO 2022-12-22T13:53:15,789 writing dependency_links to NGPIris.egg-info/dependency_links.txt 2022-12-22T13:53:15,792 writing entry points to NGPIris.egg-info/entry_points.txt 2022-12-22T13:53:15,794 writing requirements to NGPIris.egg-info/requires.txt 2022-12-22T13:53:15,796 writing top-level names to NGPIris.egg-info/top_level.txt 2022-12-22T13:53:15,819 reading manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:15,825 reading manifest template 'MANIFEST.in' 2022-12-22T13:53:15,827 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'requires-python' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:15,828 !! 2022-12-22T13:53:15,829 ########################################################################## 2022-12-22T13:53:15,829 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:15,829 ########################################################################## 2022-12-22T13:53:15,830 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:15,831 `requires-python = '>=3.6'` 2022-12-22T13:53:15,831 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:15,832 consider this value unless 'requires-python' is listed as `dynamic`. 2022-12-22T13:53:15,832 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:15,833 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:15,834 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:15,834 follow strictly the standard. 2022-12-22T13:53:15,835 To prevent this warning, you can list 'requires-python' under `dynamic` or alternatively 2022-12-22T13:53:15,835 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:15,835 configuration. 2022-12-22T13:53:15,836 !! 2022-12-22T13:53:15,837 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:15,837 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'classifiers' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:15,838 !! 2022-12-22T13:53:15,838 ########################################################################## 2022-12-22T13:53:15,839 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:15,839 ########################################################################## 2022-12-22T13:53:15,840 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:15,840 `classifiers = ['Programming Language :: Python :: 3', 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', 'Operating System :: OS Independent']` 2022-12-22T13:53:15,841 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:15,841 consider this value unless 'classifiers' is listed as `dynamic`. 2022-12-22T13:53:15,842 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:15,842 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:15,843 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:15,843 follow strictly the standard. 2022-12-22T13:53:15,844 To prevent this warning, you can list 'classifiers' under `dynamic` or alternatively 2022-12-22T13:53:15,844 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:15,844 configuration. 2022-12-22T13:53:15,845 !! 2022-12-22T13:53:15,846 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:15,846 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'urls' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:15,846 !! 2022-12-22T13:53:15,847 ########################################################################## 2022-12-22T13:53:15,848 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:15,848 ########################################################################## 2022-12-22T13:53:15,849 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:15,849 `urls = {'Bug Tracker': 'https://github.com/genomic-medicine-sweden/NGPIris/issues'}` 2022-12-22T13:53:15,850 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:15,850 consider this value unless 'urls' is listed as `dynamic`. 2022-12-22T13:53:15,851 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:15,851 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:15,852 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:15,852 follow strictly the standard. 2022-12-22T13:53:15,852 To prevent this warning, you can list 'urls' under `dynamic` or alternatively 2022-12-22T13:53:15,853 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:15,853 configuration. 2022-12-22T13:53:15,854 !! 2022-12-22T13:53:15,855 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:15,855 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'entry-points' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:15,855 !! 2022-12-22T13:53:15,856 ########################################################################## 2022-12-22T13:53:15,857 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:15,857 ########################################################################## 2022-12-22T13:53:15,858 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:15,858 `entry-points = {'console_scripts': ['iris=NGPIris.cli.base:root']}` 2022-12-22T13:53:15,859 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:15,859 consider this value unless 'entry-points' is listed as `dynamic`. 2022-12-22T13:53:15,860 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:15,860 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:15,861 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:15,861 follow strictly the standard. 2022-12-22T13:53:15,862 To prevent this warning, you can list 'entry-points' under `dynamic` or alternatively 2022-12-22T13:53:15,862 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:15,862 configuration. 2022-12-22T13:53:15,863 !! 2022-12-22T13:53:15,864 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:15,864 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/config/_apply_pyprojecttoml.py:103: _WouldIgnoreField: 'dependencies' defined outside of `pyproject.toml` would be ignored. 2022-12-22T13:53:15,865 !! 2022-12-22T13:53:15,866 ########################################################################## 2022-12-22T13:53:15,867 # configuration would be ignored/result in error due to `pyproject.toml` # 2022-12-22T13:53:15,867 ########################################################################## 2022-12-22T13:53:15,868 The following seems to be defined outside of `pyproject.toml`: 2022-12-22T13:53:15,868 `dependencies = ['boto3>=1.12.34', 'click>=7.1.2', 'requests>=2.25.0']` 2022-12-22T13:53:15,869 According to the spec (see the link below), however, setuptools CANNOT 2022-12-22T13:53:15,869 consider this value unless 'dependencies' is listed as `dynamic`. 2022-12-22T13:53:15,870 https://packaging.python.org/en/latest/specifications/declaring-project-metadata/ 2022-12-22T13:53:15,870 For the time being, `setuptools` will still consider the given value (as a 2022-12-22T13:53:15,871 **transitional** measure), but please note that future releases of setuptools will 2022-12-22T13:53:15,871 follow strictly the standard. 2022-12-22T13:53:15,872 To prevent this warning, you can list 'dependencies' under `dynamic` or alternatively 2022-12-22T13:53:15,872 remove the `[project]` table from your file and rely entirely on other means of 2022-12-22T13:53:15,872 configuration. 2022-12-22T13:53:15,873 !! 2022-12-22T13:53:15,874 warnings.warn(msg, _WouldIgnoreField) 2022-12-22T13:53:15,874 warning: no files found matching 'freeze.txt' 2022-12-22T13:53:15,875 warning: no files found matching 'profile.json' 2022-12-22T13:53:15,875 adding license file 'LICENSE' 2022-12-22T13:53:15,875 writing manifest file 'NGPIris.egg-info/SOURCES.txt' 2022-12-22T13:53:15,876 creating build/lib/tests/data 2022-12-22T13:53:15,876 copying tests/data/test.json -> build/lib/tests/data 2022-12-22T13:53:15,876 copying tests/data/test_reads_R1.fasterq -> build/lib/tests/data 2022-12-22T13:53:15,877 copying tests/data/test_reads_R1.fastq.gz -> build/lib/tests/data 2022-12-22T13:53:15,877 copying NGPIris/hci/template_query.json -> build/lib/NGPIris/hci 2022-12-22T13:53:15,900 installing to build/bdist.linux-armv7l/wheel 2022-12-22T13:53:15,900 running install 2022-12-22T13:53:15,964 running install_lib 2022-12-22T13:53:15,974 creating build/bdist.linux-armv7l 2022-12-22T13:53:15,975 creating build/bdist.linux-armv7l/wheel 2022-12-22T13:53:15,978 creating build/bdist.linux-armv7l/wheel/NGPIris 2022-12-22T13:53:15,980 copying build/lib/NGPIris/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris 2022-12-22T13:53:15,985 creating build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:15,987 copying build/lib/NGPIris/hcp/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:15,991 copying build/lib/NGPIris/hcp/config.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:15,994 copying build/lib/NGPIris/hcp/interactive.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:15,998 copying build/lib/NGPIris/hcp/errors.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:16,002 copying build/lib/NGPIris/hcp/helpers.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:16,006 copying build/lib/NGPIris/hcp/hcp.py -> build/bdist.linux-armv7l/wheel/NGPIris/hcp 2022-12-22T13:53:16,012 creating build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-12-22T13:53:16,013 copying build/lib/NGPIris/hci/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-12-22T13:53:16,017 copying build/lib/NGPIris/hci/template_query.json -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-12-22T13:53:16,021 copying build/lib/NGPIris/hci/hci.py -> build/bdist.linux-armv7l/wheel/NGPIris/hci 2022-12-22T13:53:16,026 creating build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-12-22T13:53:16,028 copying build/lib/NGPIris/preproc/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-12-22T13:53:16,031 copying build/lib/NGPIris/preproc/preproc.py -> build/bdist.linux-armv7l/wheel/NGPIris/preproc 2022-12-22T13:53:16,036 creating build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-12-22T13:53:16,038 copying build/lib/NGPIris/cli/__init__.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-12-22T13:53:16,041 copying build/lib/NGPIris/cli/base.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-12-22T13:53:16,045 copying build/lib/NGPIris/cli/utils.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-12-22T13:53:16,048 copying build/lib/NGPIris/cli/functions.py -> build/bdist.linux-armv7l/wheel/NGPIris/cli 2022-12-22T13:53:16,054 creating build/bdist.linux-armv7l/wheel/tests 2022-12-22T13:53:16,055 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2022-12-22T13:53:16,059 copying build/lib/tests/test_cmds.py -> build/bdist.linux-armv7l/wheel/tests 2022-12-22T13:53:16,062 copying build/lib/tests/test_hcp.py -> build/bdist.linux-armv7l/wheel/tests 2022-12-22T13:53:16,067 creating build/bdist.linux-armv7l/wheel/tests/data 2022-12-22T13:53:16,069 copying build/lib/tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/tests/data 2022-12-22T13:53:16,072 copying build/lib/tests/data/test.json -> build/bdist.linux-armv7l/wheel/tests/data 2022-12-22T13:53:16,076 copying build/lib/tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/tests/data 2022-12-22T13:53:16,082 running install_data 2022-12-22T13:53:16,094 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data 2022-12-22T13:53:16,094 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data 2022-12-22T13:53:16,097 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/NGPIris 2022-12-22T13:53:16,099 copying config.ini -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/NGPIris 2022-12-22T13:53:16,103 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/reference 2022-12-22T13:53:16,104 copying reference/covidMetadataAllowedValues.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/reference 2022-12-22T13:53:16,108 copying reference/covidMetadataTemplate.csv -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/reference 2022-12-22T13:53:16,112 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/testdata 2022-12-22T13:53:16,113 copying tests/data/test_reads_R1.fasterq -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/testdata 2022-12-22T13:53:16,120 copying tests/data/test_reads_R1.fastq.gz -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/testdata 2022-12-22T13:53:16,124 copying tests/data/test.json -> build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.data/data/testdata 2022-12-22T13:53:16,126 running install_egg_info 2022-12-22T13:53:16,136 Copying NGPIris.egg-info to build/bdist.linux-armv7l/wheel/NGPIris-4.2.0-py3.7.egg-info 2022-12-22T13:53:16,163 running install_scripts 2022-12-22T13:53:16,208 creating build/bdist.linux-armv7l/wheel/NGPIris-4.2.0.dist-info/WHEEL 2022-12-22T13:53:16,214 creating '/tmp/pip-wheel-ngmg19lp/.tmp-hhpop6jw/NGPIris-4.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-22T13:53:16,219 adding 'NGPIris/__init__.py' 2022-12-22T13:53:16,223 adding 'NGPIris/cli/__init__.py' 2022-12-22T13:53:16,226 adding 'NGPIris/cli/base.py' 2022-12-22T13:53:16,229 adding 'NGPIris/cli/functions.py' 2022-12-22T13:53:16,232 adding 'NGPIris/cli/utils.py' 2022-12-22T13:53:16,235 adding 'NGPIris/hci/__init__.py' 2022-12-22T13:53:16,238 adding 'NGPIris/hci/hci.py' 2022-12-22T13:53:16,241 adding 'NGPIris/hci/template_query.json' 2022-12-22T13:53:16,244 adding 'NGPIris/hcp/__init__.py' 2022-12-22T13:53:16,247 adding 'NGPIris/hcp/config.py' 2022-12-22T13:53:16,249 adding 'NGPIris/hcp/errors.py' 2022-12-22T13:53:16,253 adding 'NGPIris/hcp/hcp.py' 2022-12-22T13:53:16,257 adding 'NGPIris/hcp/helpers.py' 2022-12-22T13:53:16,260 adding 'NGPIris/hcp/interactive.py' 2022-12-22T13:53:16,264 adding 'NGPIris/preproc/__init__.py' 2022-12-22T13:53:16,267 adding 'NGPIris/preproc/preproc.py' 2022-12-22T13:53:16,272 adding 'NGPIris-4.2.0.data/data/NGPIris/config.ini' 2022-12-22T13:53:16,276 adding 'NGPIris-4.2.0.data/data/reference/covidMetadataAllowedValues.csv' 2022-12-22T13:53:16,278 adding 'NGPIris-4.2.0.data/data/reference/covidMetadataTemplate.csv' 2022-12-22T13:53:16,282 adding 'NGPIris-4.2.0.data/data/testdata/test.json' 2022-12-22T13:53:16,295 adding 'NGPIris-4.2.0.data/data/testdata/test_reads_R1.fasterq' 2022-12-22T13:53:16,298 adding 'NGPIris-4.2.0.data/data/testdata/test_reads_R1.fastq.gz' 2022-12-22T13:53:16,305 adding 'tests/__init__.py' 2022-12-22T13:53:16,307 adding 'tests/test_cmds.py' 2022-12-22T13:53:16,310 adding 'tests/test_hcp.py' 2022-12-22T13:53:16,314 adding 'tests/data/test.json' 2022-12-22T13:53:16,327 adding 'tests/data/test_reads_R1.fasterq' 2022-12-22T13:53:16,330 adding 'tests/data/test_reads_R1.fastq.gz' 2022-12-22T13:53:16,337 adding 'NGPIris-4.2.0.dist-info/LICENSE' 2022-12-22T13:53:16,341 adding 'NGPIris-4.2.0.dist-info/METADATA' 2022-12-22T13:53:16,343 adding 'NGPIris-4.2.0.dist-info/WHEEL' 2022-12-22T13:53:16,345 adding 'NGPIris-4.2.0.dist-info/entry_points.txt' 2022-12-22T13:53:16,347 adding 'NGPIris-4.2.0.dist-info/top_level.txt' 2022-12-22T13:53:16,349 adding 'NGPIris-4.2.0.dist-info/RECORD' 2022-12-22T13:53:16,357 removing build/bdist.linux-armv7l/wheel 2022-12-22T13:53:16,388 /tmp/pip-build-env-am34xoos/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'tests.data' as data is deprecated, please list it in `packages`. 2022-12-22T13:53:16,388 !! 2022-12-22T13:53:16,389 ############################ 2022-12-22T13:53:16,390 # Package would be ignored # 2022-12-22T13:53:16,390 ############################ 2022-12-22T13:53:16,390 Python recognizes 'tests.data' as an importable package, 2022-12-22T13:53:16,391 but it is not listed in the `packages` configuration of setuptools. 2022-12-22T13:53:16,392 'tests.data' has been automatically added to the distribution only 2022-12-22T13:53:16,392 because it may contain data files, but this behavior is likely to change 2022-12-22T13:53:16,393 in future versions of setuptools (and therefore is considered deprecated). 2022-12-22T13:53:16,394 Please make sure that 'tests.data' is included as a package by using 2022-12-22T13:53:16,394 the `packages` configuration field or the proper discovery methods 2022-12-22T13:53:16,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2022-12-22T13:53:16,395 instead of `find_packages(...)`/`find:`). 2022-12-22T13:53:16,396 You can read more about "package discovery" and "data files" on setuptools 2022-12-22T13:53:16,396 documentation page. 2022-12-22T13:53:16,398 !! 2022-12-22T13:53:16,398 check.warn(importable) 2022-12-22T13:53:16,626 Building wheel for ngpiris (pyproject.toml): finished with status 'done' 2022-12-22T13:53:16,645 Created wheel for ngpiris: filename=NGPIris-4.2.0-py3-none-any.whl size=119922 sha256=996091bd85b7851e9cb4853f6666118085eb8336655c7c559dc0ae5024646a36 2022-12-22T13:53:16,647 Stored in directory: /tmp/pip-ephem-wheel-cache-uc3qzmod/wheels/0a/ee/fa/06f158b6f31ce33cbbfac54d9d4a42d4163d0bafba483a21d7 2022-12-22T13:53:16,677 Successfully built ngpiris 2022-12-22T13:53:16,695 Removed build tracker: '/tmp/pip-build-tracker-f5s608_e'