2022-12-22T15:58:29,878 Created temporary directory: /tmp/pip-ephem-wheel-cache-z48124k4
2022-12-22T15:58:29,880 Created temporary directory: /tmp/pip-build-tracker-c2e2zehu
2022-12-22T15:58:29,880 Initialized build tracking at /tmp/pip-build-tracker-c2e2zehu
2022-12-22T15:58:29,881 Created build tracker: /tmp/pip-build-tracker-c2e2zehu
2022-12-22T15:58:29,881 Entered build tracker: /tmp/pip-build-tracker-c2e2zehu
2022-12-22T15:58:29,881 Created temporary directory: /tmp/pip-wheel-ph54lly6
2022-12-22T15:58:29,885 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-22T15:58:29,887 Created temporary directory: /tmp/pip-ephem-wheel-cache-63yfunmw
2022-12-22T15:58:29,910 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-22T15:58:29,913 2 location(s) to search for versions of moleculekit:
2022-12-22T15:58:29,913 * https://pypi.org/simple/moleculekit/
2022-12-22T15:58:29,913 * https://www.piwheels.org/simple/moleculekit/
2022-12-22T15:58:29,914 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2022-12-22T15:58:29,914 Getting page https://pypi.org/simple/moleculekit/
2022-12-22T15:58:29,915 Found index url https://pypi.org/simple
2022-12-22T15:58:29,968 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2022-12-22T15:58:30,001   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,002   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2022-12-22T15:58:30,002   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,002   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2022-12-22T15:58:30,002   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,003   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2022-12-22T15:58:30,003   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,003   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2022-12-22T15:58:30,003   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,004   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2022-12-22T15:58:30,004   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,004   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2022-12-22T15:58:30,004   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-22T15:58:30,005   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-22T15:58:30,005   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-22T15:58:30,006   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,006   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2022-12-22T15:58:30,006   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,007   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2022-12-22T15:58:30,007   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,007   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2022-12-22T15:58:30,007   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,008   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2022-12-22T15:58:30,008   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,008   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2022-12-22T15:58:30,008   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,009   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2022-12-22T15:58:30,009   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,009   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2022-12-22T15:58:30,009   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,010   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2022-12-22T15:58:30,010   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,010   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2022-12-22T15:58:30,010   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,010   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2022-12-22T15:58:30,011   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,011   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2022-12-22T15:58:30,011   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,011   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2022-12-22T15:58:30,012   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,012   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2022-12-22T15:58:30,012   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,012   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2022-12-22T15:58:30,013   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,013   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2022-12-22T15:58:30,013   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,013   Found link https://files.pythonhosted.org/packages/ce/2a/e4f0ea22c4e3be055409fbe8cda7802bd2cd1095926f62f2c78b7f447b46/moleculekit-0.2.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.2
2022-12-22T15:58:30,014   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,014   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2022-12-22T15:58:30,014   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,014   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2022-12-22T15:58:30,015   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2022-12-22T15:58:30,015   Found link https://files.pythonhosted.org/packages/dd/7a/f6d8ac771d9e4c9117ab098a281231e6c4c3fadbbeafce69ac5b8370f2bd/moleculekit-0.2.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.5
2022-12-22T15:58:30,015   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-22T15:58:30,016   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2022-12-22T15:58:30,035   Found link https://files.pythonhosted.org/packages/c7/e6/72a4be7c3db86704ca264e68de620327a6c292f01b2fb9a9a186e0909622/moleculekit-0.9.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.9.6
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2022-12-22T15:58:30,037   Found link https://files.pythonhosted.org/packages/19/73/98bfd38e7d5823dc1d21ca3557d9f599b09926d252b22e215688677fe1eb/moleculekit-1.0.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.0
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2022-12-22T15:58:30,039   Found link https://files.pythonhosted.org/packages/61/45/acbe2272378c87f0796b1ebcba0673a13acc5ed87eb0d29fa16e1bfe54cf/moleculekit-1.0.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.0.8
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2022-12-22T15:58:30,040   Found link https://files.pythonhosted.org/packages/3c/b6/64b6ae76e4b562d453b31fd28678232838949d56f1dafabd12531362de23/moleculekit-1.1.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.1
2022-12-22T15:58:30,041   Found link https://files.pythonhosted.org/packages/15/f8/fb94ef622b57eea44916cbed8a838efcbbd62c9732879ec4864c3abaf3d0/moleculekit-1.1.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.2
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2022-12-22T15:58:30,042   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2022-12-22T15:58:30,042   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2022-12-22T15:58:30,043   Found link https://files.pythonhosted.org/packages/39/b3/50e46e2780075c4adf93bba603ad047457f3d9cd70a77f4909776ec446b3/moleculekit-1.2.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.7
2022-12-22T15:58:30,044   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
2022-12-22T15:58:30,044   Found link https://files.pythonhosted.org/packages/47/55/207179562e46a3cba4a1cb813c1754be6c5a1664a11d1dcffe89b51c1ca4/moleculekit-1.2.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.9
2022-12-22T15:58:30,044   Found link https://files.pythonhosted.org/packages/2e/1c/a07b4d5f471fc90ba12e88e44675ddbf0ba4b0a658c2fc014491a7a27092/moleculekit-1.3.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.0
2022-12-22T15:58:30,045   Found link https://files.pythonhosted.org/packages/80/9b/d0375ea58246506494224acf560e8d2da623d1635047089316a01ab146a0/moleculekit-1.3.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.1
2022-12-22T15:58:30,045   Found link https://files.pythonhosted.org/packages/f9/f6/5808fddfaeeb3c021514c45f1b896329245c2e1c6218a86b9bc9f1904d7d/moleculekit-1.3.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.3
2022-12-22T15:58:30,045   Found link https://files.pythonhosted.org/packages/0f/87/45be2661273532639b9aef46f7335ef962ac0f4d5a022cad9fae46b3ed76/moleculekit-1.3.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.4
2022-12-22T15:58:30,045   Found link https://files.pythonhosted.org/packages/0b/c2/d5b36c664c2d4f8736b5dbf06b05d9efeeacd4d488125c8feb0e4efb3594/moleculekit-1.3.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.5
2022-12-22T15:58:30,046   Found link https://files.pythonhosted.org/packages/30/3d/7f0577f2f4fd87df9160c6c80c49fe7d025f40b9f25c6b6d9ed0bcd2341f/moleculekit-1.3.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.7
2022-12-22T15:58:30,046   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2022-12-22T15:58:30,046   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2022-12-22T15:58:30,047   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2022-12-22T15:58:30,047   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2022-12-22T15:58:30,047   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2022-12-22T15:58:30,047   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
2022-12-22T15:58:30,048   Found link https://files.pythonhosted.org/packages/a1/9c/61a877e38393372a16746096dc836e3a24d0fe31240644258396f6ec1dd5/moleculekit-1.4.5-1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.5-1
2022-12-22T15:58:30,048   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2022-12-22T15:58:30,049   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2022-12-22T15:58:30,049   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2022-12-22T15:58:30,050   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2022-12-22T15:58:30,051   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2022-12-22T15:58:30,051   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2022-12-22T15:58:30,052   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2022-12-22T15:58:30,052   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2022-12-22T15:58:30,053   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2022-12-22T15:58:30,053   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2022-12-22T15:58:30,054 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2022-12-22T15:58:30,054 Getting page https://www.piwheels.org/simple/moleculekit/
2022-12-22T15:58:30,055 Found index url https://www.piwheels.org/simple
2022-12-22T15:58:30,245 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2022-12-22T15:58:30,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.4-cp39-cp39-linux_armv7l.whl#sha256=1fc4c6ec32c23ebee660588de417f646cbfb358d0999778e2b3c0aa53708a6db (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.4-cp39-cp39-linux_armv6l.whl#sha256=1fc4c6ec32c23ebee660588de417f646cbfb358d0999778e2b3c0aa53708a6db (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,290   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.3-cp39-cp39-linux_armv7l.whl#sha256=a58a8161291ef6053c2da61de41173f39fae373796d435240cdb0916e437856b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.3-cp39-cp39-linux_armv6l.whl#sha256=a58a8161291ef6053c2da61de41173f39fae373796d435240cdb0916e437856b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.2-cp39-cp39-linux_armv7l.whl#sha256=8b358f2e4238d3d23612200b0ffd6a1ab6df72929d6e06022996ee2b0bc7c3cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.2-cp39-cp39-linux_armv6l.whl#sha256=8b358f2e4238d3d23612200b0ffd6a1ab6df72929d6e06022996ee2b0bc7c3cd (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.1-cp39-cp39-linux_armv7l.whl#sha256=d1155b4bc9b95abfc6141b655eeab895c018b6bc3898d086c1e9aed690b555d7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,291   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.1-cp39-cp39-linux_armv6l.whl#sha256=d1155b4bc9b95abfc6141b655eeab895c018b6bc3898d086c1e9aed690b555d7 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.0-cp39-cp39-linux_armv7l.whl#sha256=2335de6704a494b118481ac750c91de9befd1a0e12629fd0d7b20ca020ab582f (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2022-12-22T15:58:30,292   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.0-cp39-cp39-linux_armv6l.whl#sha256=2335de6704a494b118481ac750c91de9befd1a0e12629fd0d7b20ca020ab582f (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2022-12-22T15:58:30,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.9-cp37-cp37m-linux_armv6l.whl#sha256=66dbff1fb6cecaa00851b6b78480b3d8eb3f5f5d9aae539ad9397ec3dc9b22d8 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,297   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.8-cp39-cp39-linux_armv6l.whl#sha256=72aada7099cf1c7fbed38107b64c08622659cb763f35e5f2b75052a08f5cb853 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv7l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv6l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,298   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv6l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,299   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,300   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,301   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv6l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,302   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,303   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,304   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,305   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,306   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,307   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,308   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,309   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,310   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,311   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,312   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,313   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,314   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv6l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv7l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp37-cp37m-linux_armv6l.whl#sha256=e6497cd1fa524aee3c9d431fc1556e29e1ff896a6c49eca8572fb6ffc399cd6c (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.4-py3-none-any.whl#sha256=9ea33917985ebf7bdfdbb276c83c4b2b1be17adbefb6062cc28c7ac037e3fab8 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.3-py3-none-any.whl#sha256=60b48ad38d8567be173c2a4a384dd7d742cf0b9f80eac5510c5987a9e1b668b6 (from https://www.piwheels.org/simple/moleculekit/)
2022-12-22T15:58:30,315   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.5.2-py3-none-any.whl#sha256=89c944d279cde5c1d1ea898c4495e8076b1a1c477f1594f024110adcb137070e (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,318   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.2.9-py3-none-any.whl#sha256=76a22c44b710351a9d3c94d7e7c1d96c61e90251004b2a34cdcc92280d423a09 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,321   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.24-py3-none-any.whl#sha256=13d00e3b7c8c41bc82131fa7f6df5c575b3ed0efc89b715f8ee35bb68dbe1b68 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,322   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2022-12-22T15:58:30,324 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2022-12-22T15:58:30,324 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2022-12-22T15:58:30,361 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2022-12-22T15:58:30,378 Collecting moleculekit==1.5.5
2022-12-22T15:58:30,381   Created temporary directory: /tmp/pip-unpack-wdkfyxv5
2022-12-22T15:58:31,062   Downloading moleculekit-1.5.5.tar.gz (5.8 MB)
2022-12-22T15:58:34,673   Added moleculekit==1.5.5 from https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz to build tracker '/tmp/pip-build-tracker-c2e2zehu'
2022-12-22T15:58:34,681   Created temporary directory: /tmp/pip-build-env-yzptql5j
2022-12-22T15:58:34,689   Installing build dependencies: started
2022-12-22T15:58:34,689   Running command pip subprocess to install build dependencies
2022-12-22T15:58:35,919   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-12-22T15:58:36,312   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-22T15:58:36,337   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-22T15:58:37,947   Collecting setuptools
2022-12-22T15:58:38,080     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB)
2022-12-22T15:58:39,318   Collecting numpy>=1.18.5
2022-12-22T15:58:40,482     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.0-cp39-cp39-linux_armv7l.whl (12.3 MB)
2022-12-22T15:58:42,180   Collecting Cython>=0.29.21
2022-12-22T15:58:42,676     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB)
2022-12-22T15:58:42,967   Collecting toml
2022-12-22T15:58:42,985     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2022-12-22T15:58:43,245   Collecting versioneer[toml]==0.26
2022-12-22T15:58:43,296     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.26-py3-none-any.whl (44 kB)
2022-12-22T15:58:43,419   Collecting tomli
2022-12-22T15:58:43,434     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2022-12-22T15:58:45,517   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2022-12-22T15:58:45,556     Creating /tmp/pip-build-env-yzptql5j/overlay/bin
2022-12-22T15:58:45,558     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/versioneer to 755
2022-12-22T15:58:56,904     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/f2py to 755
2022-12-22T15:58:56,906     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/f2py3 to 755
2022-12-22T15:58:56,908     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/f2py3.9 to 755
2022-12-22T15:58:59,792     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/cygdb to 755
2022-12-22T15:58:59,795     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/cython to 755
2022-12-22T15:58:59,797     changing mode of /tmp/pip-build-env-yzptql5j/overlay/bin/cythonize to 755
2022-12-22T15:58:59,825   Successfully installed Cython-0.29.32 numpy-1.24.0 setuptools-65.6.3 toml-0.10.2 tomli-2.0.1 versioneer-0.26

2022-12-22T15:58:59,840   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-12-22T15:58:59,841   [notice] To update, run: python3 -m pip install --upgrade pip
2022-12-22T15:59:00,209   Installing build dependencies: finished with status 'done'
2022-12-22T15:59:00,215   Getting requirements to build wheel: started
2022-12-22T15:59:00,216   Running command Getting requirements to build wheel
2022-12-22T15:59:43,516   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,517   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,518   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,519   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2022-12-22T15:59:43,519   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2022-12-22T15:59:43,519   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
2022-12-22T15:59:43,519   [ 2/11] Cythonizing moleculekit/bondguesser_utils/bondguesser_utils.pyx
2022-12-22T15:59:43,519   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2022-12-22T15:59:43,519   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2022-12-22T15:59:43,519   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2022-12-22T15:59:43,519   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2022-12-22T15:59:43,520   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2022-12-22T15:59:43,520   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2022-12-22T15:59:43,520   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2022-12-22T15:59:43,520   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
2022-12-22T15:59:43,520   [11/11] Cythonizing moleculekit/xtc_utils/xtc.pyx
2022-12-22T15:59:43,606   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-22T15:59:43,606     warnings.warn(msg, _BetaConfiguration)
2022-12-22T15:59:43,762   running egg_info
2022-12-22T15:59:43,769   writing moleculekit.egg-info/PKG-INFO
2022-12-22T15:59:43,772   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-12-22T15:59:43,774   writing requirements to moleculekit.egg-info/requires.txt
2022-12-22T15:59:43,776   writing top-level names to moleculekit.egg-info/top_level.txt
2022-12-22T15:59:43,806   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:43,846   reading manifest template 'MANIFEST.in'
2022-12-22T15:59:44,125   warning: no files found matching '*.c' under directory 'moleculekit/xtc_utils/src'
2022-12-22T15:59:44,126   no previously-included directories found matching 'moleculekit/test-data'
2022-12-22T15:59:44,127   no previously-included directories found matching 'moleculekit/tests'
2022-12-22T15:59:44,128   no previously-included directories found matching 'package'
2022-12-22T15:59:44,128   adding license file 'LICENSE'
2022-12-22T15:59:44,146   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:45,033   Getting requirements to build wheel: finished with status 'done'
2022-12-22T15:59:45,051   Installing backend dependencies: started
2022-12-22T15:59:45,052   Running command pip subprocess to install backend dependencies
2022-12-22T15:59:46,399   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2022-12-22T15:59:46,827   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-22T15:59:46,858   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-22T15:59:47,344   Collecting wheel
2022-12-22T15:59:47,365     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2022-12-22T15:59:49,019   Installing collected packages: wheel
2022-12-22T15:59:49,172     Creating /tmp/pip-build-env-yzptql5j/normal/bin
2022-12-22T15:59:49,174     changing mode of /tmp/pip-build-env-yzptql5j/normal/bin/wheel to 755
2022-12-22T15:59:49,188   Successfully installed wheel-0.38.4

2022-12-22T15:59:49,203   [notice] A new release of pip available: 22.3 -> 22.3.1
2022-12-22T15:59:49,203   [notice] To update, run: python3 -m pip install --upgrade pip
2022-12-22T15:59:49,414   Installing backend dependencies: finished with status 'done'
2022-12-22T15:59:49,417   Created temporary directory: /tmp/pip-modern-metadata-g7_evzxd
2022-12-22T15:59:49,420   Preparing metadata (pyproject.toml): started
2022-12-22T15:59:49,421   Running command Preparing metadata (pyproject.toml)
2022-12-22T15:59:51,482   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-22T15:59:51,483     warnings.warn(msg, _BetaConfiguration)
2022-12-22T15:59:51,652   running dist_info
2022-12-22T15:59:51,656   creating /tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info
2022-12-22T15:59:51,662   writing /tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/PKG-INFO
2022-12-22T15:59:51,665   writing dependency_links to /tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/dependency_links.txt
2022-12-22T15:59:51,667   writing requirements to /tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/requires.txt
2022-12-22T15:59:51,669   writing top-level names to /tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/top_level.txt
2022-12-22T15:59:51,670   writing manifest file '/tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:51,706   reading manifest file '/tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:51,710   reading manifest template 'MANIFEST.in'
2022-12-22T15:59:51,986   warning: no files found matching '*.c' under directory 'moleculekit/xtc_utils/src'
2022-12-22T15:59:51,987   no previously-included directories found matching 'moleculekit/test-data'
2022-12-22T15:59:51,988   no previously-included directories found matching 'moleculekit/tests'
2022-12-22T15:59:51,989   no previously-included directories found matching 'package'
2022-12-22T15:59:51,989   adding license file 'LICENSE'
2022-12-22T15:59:52,001   writing manifest file '/tmp/pip-modern-metadata-g7_evzxd/moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:52,012   creating '/tmp/pip-modern-metadata-g7_evzxd/moleculekit-1.5.5.dist-info'
2022-12-22T15:59:52,276   Preparing metadata (pyproject.toml): finished with status 'done'
2022-12-22T15:59:52,284   Source in /tmp/pip-wheel-ph54lly6/moleculekit_e85e83136bdf47cdaecef23186af2f0e has version 1.5.5, which satisfies requirement moleculekit==1.5.5 from https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz
2022-12-22T15:59:52,285   Removed moleculekit==1.5.5 from https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz from build tracker '/tmp/pip-build-tracker-c2e2zehu'
2022-12-22T15:59:52,292 Created temporary directory: /tmp/pip-unpack-gpynv8rr
2022-12-22T15:59:52,293 Building wheels for collected packages: moleculekit
2022-12-22T15:59:52,297   Created temporary directory: /tmp/pip-wheel-hvljm7uh
2022-12-22T15:59:52,298   Destination directory: /tmp/pip-wheel-hvljm7uh
2022-12-22T15:59:52,300   Building wheel for moleculekit (pyproject.toml): started
2022-12-22T15:59:52,301   Running command Building wheel for moleculekit (pyproject.toml)
2022-12-22T15:59:54,494   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2022-12-22T15:59:54,495     warnings.warn(msg, _BetaConfiguration)
2022-12-22T15:59:54,652   running bdist_wheel
2022-12-22T15:59:54,669   running build
2022-12-22T15:59:54,669   running build_py
2022-12-22T15:59:54,679   creating build
2022-12-22T15:59:54,679   creating build/lib.linux-armv7l-cpython-39
2022-12-22T15:59:54,680   creating build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,681   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,684   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,686   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,688   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,689   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,692   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,694   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,697   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,700   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,702   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,705   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,707   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,709   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,713   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,716   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,718   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,720   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,723   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,726   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,728   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:54,733   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-22T15:59:54,734   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-22T15:59:54,736   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-22T15:59:54,740   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-22T15:59:54,741   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-22T15:59:54,743   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-22T15:59:54,745   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-22T15:59:54,747   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2022-12-22T15:59:54,751   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,752   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,754   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,757   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,759   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,761   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,764   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,767   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,770   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,772   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,775   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,777   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,780   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,782   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,785   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,787   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2022-12-22T15:59:54,791   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-22T15:59:54,792   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-22T15:59:54,796   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-22T15:59:54,798   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2022-12-22T15:59:54,802   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-12-22T15:59:54,803   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2022-12-22T15:59:54,805   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,806   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,809   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,812   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,814   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,816   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,819   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2022-12-22T15:59:54,822   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,823   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,826   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,829   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,832   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,834   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,836   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,839   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,841   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,845   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,848   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,850   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,852   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,855   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2022-12-22T15:59:54,858   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-22T15:59:54,859   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-22T15:59:54,862   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-22T15:59:54,863   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-22T15:59:54,866   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2022-12-22T15:59:54,869   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-22T15:59:54,870   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-22T15:59:54,873   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-22T15:59:54,875   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-22T15:59:54,878   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2022-12-22T15:59:54,881   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-22T15:59:54,882   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-22T15:59:54,884   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2022-12-22T15:59:54,887   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-22T15:59:54,888   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-22T15:59:54,891   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-22T15:59:54,893   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-22T15:59:54,895   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2022-12-22T15:59:54,898   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-22T15:59:54,899   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-22T15:59:54,901   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2022-12-22T15:59:54,903   running egg_info
2022-12-22T15:59:54,911   writing moleculekit.egg-info/PKG-INFO
2022-12-22T15:59:54,914   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2022-12-22T15:59:54,915   writing requirements to moleculekit.egg-info/requires.txt
2022-12-22T15:59:54,917   writing top-level names to moleculekit.egg-info/top_level.txt
2022-12-22T15:59:54,937   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:54,946   reading manifest template 'MANIFEST.in'
2022-12-22T15:59:55,211   warning: no files found matching '*.c' under directory 'moleculekit/xtc_utils/src'
2022-12-22T15:59:55,212   no previously-included directories found matching 'moleculekit/test-data'
2022-12-22T15:59:55,213   no previously-included directories found matching 'moleculekit/tests'
2022-12-22T15:59:55,214   no previously-included directories found matching 'package'
2022-12-22T15:59:55,215   adding license file 'LICENSE'
2022-12-22T15:59:55,231   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2022-12-22T15:59:55,243   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,243       !!


2022-12-22T15:59:55,243       ############################
2022-12-22T15:59:55,243       # Package would be ignored #
2022-12-22T15:59:55,243       ############################
2022-12-22T15:59:55,244       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2022-12-22T15:59:55,244       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,244       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2022-12-22T15:59:55,244       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,244       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,244       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2022-12-22T15:59:55,245       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,245       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,245       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,245       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,245       documentation page.


2022-12-22T15:59:55,245   !!

2022-12-22T15:59:55,246     check.warn(importable)
2022-12-22T15:59:55,246   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,246       !!


2022-12-22T15:59:55,246       ############################
2022-12-22T15:59:55,247       # Package would be ignored #
2022-12-22T15:59:55,247       ############################
2022-12-22T15:59:55,247       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2022-12-22T15:59:55,247       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,247       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2022-12-22T15:59:55,247       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,247       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,248       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2022-12-22T15:59:55,248       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,248       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,248       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,248       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,248       documentation page.


2022-12-22T15:59:55,249   !!

2022-12-22T15:59:55,249     check.warn(importable)
2022-12-22T15:59:55,249   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,249       !!


2022-12-22T15:59:55,249       ############################
2022-12-22T15:59:55,249       # Package would be ignored #
2022-12-22T15:59:55,250       ############################
2022-12-22T15:59:55,250       Python recognizes 'moleculekit.distance_utils' as an importable package,
2022-12-22T15:59:55,250       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,250       'moleculekit.distance_utils' has been automatically added to the distribution only
2022-12-22T15:59:55,250       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,250       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,250       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2022-12-22T15:59:55,251       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,251       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,251       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,251       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,251       documentation page.


2022-12-22T15:59:55,251   !!

2022-12-22T15:59:55,252     check.warn(importable)
2022-12-22T15:59:55,252   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,252       !!


2022-12-22T15:59:55,252       ############################
2022-12-22T15:59:55,252       # Package would be ignored #
2022-12-22T15:59:55,252       ############################
2022-12-22T15:59:55,252       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2022-12-22T15:59:55,253       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,253       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2022-12-22T15:59:55,253       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,253       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,253       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2022-12-22T15:59:55,253       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,253       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,254       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,254       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,254       documentation page.


2022-12-22T15:59:55,254   !!

2022-12-22T15:59:55,255     check.warn(importable)
2022-12-22T15:59:55,255   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,255       !!


2022-12-22T15:59:55,255       ############################
2022-12-22T15:59:55,255       # Package would be ignored #
2022-12-22T15:59:55,255       ############################
2022-12-22T15:59:55,255       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2022-12-22T15:59:55,256       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,256       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2022-12-22T15:59:55,256       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,256       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,256       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2022-12-22T15:59:55,256       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,256       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,257       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,257       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,257       documentation page.


2022-12-22T15:59:55,257   !!

2022-12-22T15:59:55,257     check.warn(importable)
2022-12-22T15:59:55,258   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,258       !!


2022-12-22T15:59:55,258       ############################
2022-12-22T15:59:55,258       # Package would be ignored #
2022-12-22T15:59:55,258       ############################
2022-12-22T15:59:55,258       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2022-12-22T15:59:55,258       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,259       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2022-12-22T15:59:55,259       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,259       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,259       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2022-12-22T15:59:55,259       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,259       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,259       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,260       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,260       documentation page.


2022-12-22T15:59:55,260   !!

2022-12-22T15:59:55,260     check.warn(importable)
2022-12-22T15:59:55,260   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,260       !!


2022-12-22T15:59:55,261       ############################
2022-12-22T15:59:55,261       # Package would be ignored #
2022-12-22T15:59:55,261       ############################
2022-12-22T15:59:55,261       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2022-12-22T15:59:55,261       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,261       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2022-12-22T15:59:55,262       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,262       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,262       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2022-12-22T15:59:55,262       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,262       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,262       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,262       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,263       documentation page.


2022-12-22T15:59:55,263   !!

2022-12-22T15:59:55,263     check.warn(importable)
2022-12-22T15:59:55,263   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,263       !!


2022-12-22T15:59:55,264       ############################
2022-12-22T15:59:55,264       # Package would be ignored #
2022-12-22T15:59:55,264       ############################
2022-12-22T15:59:55,264       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2022-12-22T15:59:55,264       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,264       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2022-12-22T15:59:55,265       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,265       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,265       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2022-12-22T15:59:55,265       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,265       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,265       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,265       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,266       documentation page.


2022-12-22T15:59:55,266   !!

2022-12-22T15:59:55,266     check.warn(importable)
2022-12-22T15:59:55,266   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,266       !!


2022-12-22T15:59:55,267       ############################
2022-12-22T15:59:55,267       # Package would be ignored #
2022-12-22T15:59:55,267       ############################
2022-12-22T15:59:55,267       Python recognizes 'moleculekit.share' as an importable package,
2022-12-22T15:59:55,267       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,267       'moleculekit.share' has been automatically added to the distribution only
2022-12-22T15:59:55,268       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,268       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,268       Please make sure that 'moleculekit.share' is included as a package by using
2022-12-22T15:59:55,268       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,268       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,268       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,268       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,269       documentation page.


2022-12-22T15:59:55,269   !!

2022-12-22T15:59:55,269     check.warn(importable)
2022-12-22T15:59:55,269   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.atomselect' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,269       !!


2022-12-22T15:59:55,270       ############################
2022-12-22T15:59:55,270       # Package would be ignored #
2022-12-22T15:59:55,270       ############################
2022-12-22T15:59:55,270       Python recognizes 'moleculekit.share.atomselect' as an importable package,
2022-12-22T15:59:55,270       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,270       'moleculekit.share.atomselect' has been automatically added to the distribution only
2022-12-22T15:59:55,270       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,271       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,271       Please make sure that 'moleculekit.share.atomselect' is included as a package by using
2022-12-22T15:59:55,271       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,271       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,271       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,271       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,271       documentation page.


2022-12-22T15:59:55,272   !!

2022-12-22T15:59:55,272     check.warn(importable)
2022-12-22T15:59:55,272   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.pdb2pqr.residues' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,272       !!


2022-12-22T15:59:55,272       ############################
2022-12-22T15:59:55,273       # Package would be ignored #
2022-12-22T15:59:55,273       ############################
2022-12-22T15:59:55,273       Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package,
2022-12-22T15:59:55,273       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,273       'moleculekit.share.pdb2pqr.residues' has been automatically added to the distribution only
2022-12-22T15:59:55,273       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,273       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,274       Please make sure that 'moleculekit.share.pdb2pqr.residues' is included as a package by using
2022-12-22T15:59:55,274       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,274       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,274       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,274       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,274       documentation page.


2022-12-22T15:59:55,275   !!

2022-12-22T15:59:55,275     check.warn(importable)
2022-12-22T15:59:55,275   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,275       !!


2022-12-22T15:59:55,275       ############################
2022-12-22T15:59:55,275       # Package would be ignored #
2022-12-22T15:59:55,276       ############################
2022-12-22T15:59:55,276       Python recognizes 'moleculekit.tmalign' as an importable package,
2022-12-22T15:59:55,276       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,276       'moleculekit.tmalign' has been automatically added to the distribution only
2022-12-22T15:59:55,276       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,276       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,276       Please make sure that 'moleculekit.tmalign' is included as a package by using
2022-12-22T15:59:55,277       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,277       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,277       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,277       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,277       documentation page.


2022-12-22T15:59:55,277   !!

2022-12-22T15:59:55,278     check.warn(importable)
2022-12-22T15:59:55,278   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,278       !!


2022-12-22T15:59:55,278       ############################
2022-12-22T15:59:55,278       # Package would be ignored #
2022-12-22T15:59:55,278       ############################
2022-12-22T15:59:55,279       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2022-12-22T15:59:55,279       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,279       'moleculekit.tmalign.include' has been automatically added to the distribution only
2022-12-22T15:59:55,279       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,279       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,279       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2022-12-22T15:59:55,279       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,280       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,280       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,280       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,280       documentation page.


2022-12-22T15:59:55,280   !!

2022-12-22T15:59:55,280     check.warn(importable)
2022-12-22T15:59:55,281   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,281       !!


2022-12-22T15:59:55,281       ############################
2022-12-22T15:59:55,281       # Package would be ignored #
2022-12-22T15:59:55,281       ############################
2022-12-22T15:59:55,281       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2022-12-22T15:59:55,281       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,282       'moleculekit.tmalign.src' has been automatically added to the distribution only
2022-12-22T15:59:55,282       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,282       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,282       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2022-12-22T15:59:55,282       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,282       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,283       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,283       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,283       documentation page.


2022-12-22T15:59:55,283   !!

2022-12-22T15:59:55,284     check.warn(importable)
2022-12-22T15:59:55,284   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,284       !!


2022-12-22T15:59:55,284       ############################
2022-12-22T15:59:55,284       # Package would be ignored #
2022-12-22T15:59:55,285       ############################
2022-12-22T15:59:55,285       Python recognizes 'moleculekit.wrapping' as an importable package,
2022-12-22T15:59:55,285       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,285       'moleculekit.wrapping' has been automatically added to the distribution only
2022-12-22T15:59:55,285       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,285       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,286       Please make sure that 'moleculekit.wrapping' is included as a package by using
2022-12-22T15:59:55,286       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,286       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,286       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,286       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,286       documentation page.


2022-12-22T15:59:55,287   !!

2022-12-22T15:59:55,287     check.warn(importable)
2022-12-22T15:59:55,287   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,287       !!


2022-12-22T15:59:55,288       ############################
2022-12-22T15:59:55,288       # Package would be ignored #
2022-12-22T15:59:55,288       ############################
2022-12-22T15:59:55,288       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2022-12-22T15:59:55,288       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,288       'moleculekit.xtc_utils' has been automatically added to the distribution only
2022-12-22T15:59:55,288       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,289       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,289       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2022-12-22T15:59:55,289       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,289       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,289       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,289       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,290       documentation page.


2022-12-22T15:59:55,290   !!

2022-12-22T15:59:55,290     check.warn(importable)
2022-12-22T15:59:55,290   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,290       !!


2022-12-22T15:59:55,291       ############################
2022-12-22T15:59:55,291       # Package would be ignored #
2022-12-22T15:59:55,291       ############################
2022-12-22T15:59:55,291       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2022-12-22T15:59:55,291       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,291       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2022-12-22T15:59:55,291       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,292       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,292       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2022-12-22T15:59:55,292       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,292       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,292       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,292       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,292       documentation page.


2022-12-22T15:59:55,293   !!

2022-12-22T15:59:55,293     check.warn(importable)
2022-12-22T15:59:55,293   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2022-12-22T15:59:55,293       !!


2022-12-22T15:59:55,294       ############################
2022-12-22T15:59:55,294       # Package would be ignored #
2022-12-22T15:59:55,294       ############################
2022-12-22T15:59:55,294       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2022-12-22T15:59:55,294       but it is not listed in the `packages` configuration of setuptools.

2022-12-22T15:59:55,294       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2022-12-22T15:59:55,294       because it may contain data files, but this behavior is likely to change
2022-12-22T15:59:55,295       in future versions of setuptools (and therefore is considered deprecated).

2022-12-22T15:59:55,307       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2022-12-22T15:59:55,308       the `packages` configuration field or the proper discovery methods
2022-12-22T15:59:55,309       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2022-12-22T15:59:55,309       instead of `find_packages(...)`/`find:`).

2022-12-22T15:59:55,310       You can read more about "package discovery" and "data files" on setuptools
2022-12-22T15:59:55,310       documentation page.


2022-12-22T15:59:55,311   !!

2022-12-22T15:59:55,311     check.warn(importable)
2022-12-22T15:59:55,311   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:55,311   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:55,311   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-22T15:59:55,311   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-22T15:59:55,314   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-22T15:59:55,317   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-22T15:59:55,318   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-22T15:59:55,340   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-22T15:59:55,343   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-22T15:59:55,344   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-22T15:59:55,365   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-22T15:59:55,368   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-22T15:59:55,369   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-22T15:59:55,389   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-22T15:59:55,392   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-22T15:59:55,392   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-22T15:59:55,395   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-22T15:59:55,398   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2022-12-22T15:59:55,680   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-12-22T15:59:55,682   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2022-12-22T15:59:55,684   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2022-12-22T15:59:55,685   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,687   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,690   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,693   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,695   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,698   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,700   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,703   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,705   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,708   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,710   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,713   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,716   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,718   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,721   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,723   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,727   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,729   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,732   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,735   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,738   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,741   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,743   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,746   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,749   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,751   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,754   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,756   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,759   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,761   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,764   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,766   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,769   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,772   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,774   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,777   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,780   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,782   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,785   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,787   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,790   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,792   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,795   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,798   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,800   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,803   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,806   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,808   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,810   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,813   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,816   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,818   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,821   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,823   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,826   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,828   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,831   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,833   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,836   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,839   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,842   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,844   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,847   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,850   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,852   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,855   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,858   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,860   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,863   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,865   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,868   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,871   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,873   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,876   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,878   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,881   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,883   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,886   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,888   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,891   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,893   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,895   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,898   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,900   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,903   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,905   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,908   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,910   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,913   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,916   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,918   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,921   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,923   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,926   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,928   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,931   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,933   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,936   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,939   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,941   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,944   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,946   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,949   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,951   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,954   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,956   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,959   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,961   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,964   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,966   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,968   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,971   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,973   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,975   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,977   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,979   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,982   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,984   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,986   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,988   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,991   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,993   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,995   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:55,998   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,000   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,002   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,004   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,006   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,009   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,011   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,013   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,015   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,017   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,019   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,022   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,024   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,026   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,028   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,030   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,032   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,034   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,037   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,039   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,041   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,043   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,045   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,047   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,049   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,052   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,054   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,056   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,059   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,061   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,063   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,065   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,067   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,070   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,072   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,075   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,077   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,080   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,082   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,084   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,086   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,088   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,090   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,092   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,094   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,097   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,099   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,101   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,103   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,105   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,107   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,109   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,111   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2022-12-22T15:59:56,114   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-22T15:59:56,115   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-22T15:59:56,136   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-22T15:59:56,138   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-22T15:59:56,140   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-12-22T15:59:56,141   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2022-12-22T15:59:56,144   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-22T15:59:56,145   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-22T15:59:56,152   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-22T15:59:56,153   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-22T15:59:56,174   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-22T15:59:56,176   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-22T15:59:56,177   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-22T15:59:56,198   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-22T15:59:56,201   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-22T15:59:56,203   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-22T15:59:56,203   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-22T15:59:56,207   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-22T15:59:56,209   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2022-12-22T15:59:56,211   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-22T15:59:56,212   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-22T15:59:56,216   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-22T15:59:56,226   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-22T15:59:56,229   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-22T15:59:56,230   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-22T15:59:56,251   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-22T15:59:56,254   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-22T15:59:56,255   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-22T15:59:56,513   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-22T15:59:56,516   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-22T15:59:56,516   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-22T15:59:56,539   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-22T15:59:56,541   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-22T15:59:56,542   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-22T15:59:56,564   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-22T15:59:56,577   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-12-22T15:59:56,578   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.5'
2022-12-22T15:59:56,578   running build_ext
2022-12-22T15:59:56,590   building 'moleculekit.interactions.hbonds' extension
2022-12-22T15:59:56,590   creating build/temp.linux-armv7l-cpython-39
2022-12-22T15:59:56,591   creating build/temp.linux-armv7l-cpython-39/moleculekit
2022-12-22T15:59:56,592   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2022-12-22T15:59:56,592   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2022-12-22T15:59:56,594   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2022-12-22T15:59:56,927   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T15:59:56,928                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T15:59:56,928                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T15:59:56,928                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2022-12-22T15:59:56,928   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T15:59:56,928      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T15:59:56,928         |  ^~~~~~~
2022-12-22T16:00:16,099   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:00:16,443   building 'moleculekit.interactions.pipi' extension
2022-12-22T16:00:16,444   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2022-12-22T16:00:16,444   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2022-12-22T16:00:16,722   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:00:16,722                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:00:16,722                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:00:16,722                    from moleculekit/interactions/pipi/pipi.cpp:786:
2022-12-22T16:00:16,722   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:00:16,722      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:00:16,722         |  ^~~~~~~
2022-12-22T16:00:38,049   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:00:38,614   building 'moleculekit.interactions.cationpi' extension
2022-12-22T16:00:38,615   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2022-12-22T16:00:38,616   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2022-12-22T16:00:38,907   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:00:38,908                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:00:38,908                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:00:38,908                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2022-12-22T16:00:38,908   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:00:38,908      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:00:38,908         |  ^~~~~~~
2022-12-22T16:01:00,061   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:01:00,408   building 'moleculekit.interactions.sigmahole' extension
2022-12-22T16:01:00,409   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2022-12-22T16:01:00,409   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2022-12-22T16:01:00,684   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:01:00,684                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:01:00,684                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:01:00,684                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2022-12-22T16:01:00,685   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:01:00,685      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:01:00,685         |  ^~~~~~~
2022-12-22T16:01:21,596   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:01:21,938   building 'moleculekit.wrapping' extension
2022-12-22T16:01:21,939   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2022-12-22T16:01:21,940   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2022-12-22T16:01:22,214   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:01:22,215                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:01:22,215                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:01:22,215                    from moleculekit/wrapping/wrapping.cpp:786:
2022-12-22T16:01:22,215   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:01:22,216      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:01:22,216         |  ^~~~~~~
2022-12-22T16:01:39,746   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:01:39,968   building 'moleculekit.bondguesser_utils' extension
2022-12-22T16:01:39,969   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2022-12-22T16:01:39,969   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2022-12-22T16:01:40,238   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:01:40,238                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:01:40,238                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:01:40,238                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2022-12-22T16:01:40,238   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:01:40,238      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:01:40,239         |  ^~~~~~~
2022-12-22T16:01:41,435   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2022-12-22T16:01:41,436   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-22T16:01:41,436    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2022-12-22T16:01:41,436         |                       ~~~~~~~~~~^~~~~~~~~~~
2022-12-22T16:01:41,436   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-22T16:01:41,436    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2022-12-22T16:01:41,437         |                         ~~~~~~~~~~^~~~~~~~~~~
2022-12-22T16:01:41,437   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2022-12-22T16:01:41,437    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2022-12-22T16:01:41,437         |                           ~~~~~~~~~~^~~~~~~~~~~
2022-12-22T16:01:41,437   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,437    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,437         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,438    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-22T16:01:41,438         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,438    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,438         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,438   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,439    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,439         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,439   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,439    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-22T16:01:41,439         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,439   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,439    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,440         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,440   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,440    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,440         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,440   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,440    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-22T16:01:41,440         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,440   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,441    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,441         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,441    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,441         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,441   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,441    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,442         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,442   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,442    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,442         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,442   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,442    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,442         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,443    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-22T16:01:41,443         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,443   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,443    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,443         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,444    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2022-12-22T16:01:41,444         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,444    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,444         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,444   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,445    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2022-12-22T16:01:41,445         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,445   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,445    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,445         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,446   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2022-12-22T16:01:41,446    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2022-12-22T16:01:41,446         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,472   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2022-12-22T16:01:41,472   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-22T16:01:41,473    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2022-12-22T16:01:41,473         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2022-12-22T16:01:41,473   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-22T16:01:41,473    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2022-12-22T16:01:41,473         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-12-22T16:01:58,162   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:01:58,487   building 'moleculekit.atomselect_utils' extension
2022-12-22T16:01:58,488   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2022-12-22T16:01:58,489   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2022-12-22T16:01:58,764   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:01:58,765                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:01:58,765                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:01:58,765                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2022-12-22T16:01:58,765   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:01:58,765      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:01:58,765         |  ^~~~~~~
2022-12-22T16:02:00,115   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2022-12-22T16:02:00,116   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-22T16:02:00,116    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2022-12-22T16:02:00,116         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2022-12-22T16:02:00,120   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-12-22T16:02:00,121   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-22T16:02:00,121    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-12-22T16:02:00,121         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-22T16:02:00,126   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2022-12-22T16:02:00,126   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2022-12-22T16:02:00,126    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2022-12-22T16:02:00,126         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-22T16:02:23,220   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:02:23,579   building 'moleculekit.distance_utils' extension
2022-12-22T16:02:23,580   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2022-12-22T16:02:23,581   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2022-12-22T16:02:23,858   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:02:23,859                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:02:23,859                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:02:23,859                    from moleculekit/distance_utils/distance_utils.cpp:786:
2022-12-22T16:02:23,859   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:02:23,859      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:02:23,859         |  ^~~~~~~
2022-12-22T16:02:46,357   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:02:46,716   building 'moleculekit.occupancy_utils' extension
2022-12-22T16:02:46,717   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2022-12-22T16:02:46,718   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2022-12-22T16:02:46,980   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:02:46,980                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:02:46,980                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:02:46,980                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2022-12-22T16:02:46,980   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:02:46,980      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:02:46,981         |  ^~~~~~~
2022-12-22T16:03:03,740   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:03:03,969   building 'moleculekit.xtc' extension
2022-12-22T16:03:03,970   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2022-12-22T16:03:03,970   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2022-12-22T16:03:03,971   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2022-12-22T16:03:04,236   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,236      66 |  "OK",
2022-12-22T16:03:04,236         |  ^~~~
2022-12-22T16:03:04,236   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,237      67 |  "Header",
2022-12-22T16:03:04,237         |  ^~~~~~~~
2022-12-22T16:03:04,237   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,237      68 |  "String",
2022-12-22T16:03:04,237         |  ^~~~~~~~
2022-12-22T16:03:04,237   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,237      69 |  "Double",
2022-12-22T16:03:04,238         |  ^~~~~~~~
2022-12-22T16:03:04,238   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,238      70 |  "Integer",
2022-12-22T16:03:04,238         |  ^~~~~~~~~
2022-12-22T16:03:04,238   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,238      71 |  "Float",
2022-12-22T16:03:04,238         |  ^~~~~~~
2022-12-22T16:03:04,238   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,239      72 |  "Unsigned integer",
2022-12-22T16:03:04,239         |  ^~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,239   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,239      73 |  "Compressed 3D coordinate",
2022-12-22T16:03:04,239         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,239   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,239      74 |  "Closing file",
2022-12-22T16:03:04,240         |  ^~~~~~~~~~~~~~
2022-12-22T16:03:04,240   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,240      75 |  "Magic number",
2022-12-22T16:03:04,240         |  ^~~~~~~~~~~~~~
2022-12-22T16:03:04,240   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,240      76 |  "Not enough memory",
2022-12-22T16:03:04,240         |  ^~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,240   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,241      77 |  "End of file",
2022-12-22T16:03:04,241         |  ^~~~~~~~~~~~~
2022-12-22T16:03:04,241   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2022-12-22T16:03:04,241      78 |  "File not found"
2022-12-22T16:03:04,241         |  ^~~~~~~~~~~~~~~~
2022-12-22T16:03:04,245   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2022-12-22T16:03:04,245   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,246     459 |     while (size >= num && num_of_bits < 32)
2022-12-22T16:03:04,246         |            ~~~~~^~~~~~
2022-12-22T16:03:04,246   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2022-12-22T16:03:04,246   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,246     505 |     while (bytes[num_of_bytes] >= num)
2022-12-22T16:03:04,246         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2022-12-22T16:03:04,248   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2022-12-22T16:03:04,249   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,249     614 |     if (num_of_bits >= num_of_bytes * 8)
2022-12-22T16:03:04,249         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,249   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,249     616 |   for (i = 0; i < num_of_bytes; i++)
2022-12-22T16:03:04,249         |               ~~^~~~~~~~~~~~~~
2022-12-22T16:03:04,250   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,250     624 |   for (i = 0; i < num_of_bytes-1; i++)
2022-12-22T16:03:04,250         |               ~~^~~~~~~~~~~~~~~~
2022-12-22T16:03:04,250   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2022-12-22T16:03:04,250   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,250     664 |   if (lastbits < num_of_bits)
2022-12-22T16:03:04,250         |       ~~~~~~~~~^~~~~~~~~~~~~
2022-12-22T16:03:04,254   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2022-12-22T16:03:04,254   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,254     785 |  if(size3>xfp->buf1size)
2022-12-22T16:03:04,254         |     ~~~~~^~~~~~~~~~~~~~
2022-12-22T16:03:04,256   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,256     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-12-22T16:03:04,256         |                   ^
2022-12-22T16:03:04,258   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,258     932 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,259         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,259   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,259     935 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,259         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,259   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,259     938 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,259         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,260   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,260     945 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,260         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,260   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,260     948 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,260         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,260   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,260     951 |     if(countmjh >= size3 ) { return -1; }
2022-12-22T16:03:04,261         |        ~~~~~~~~~^~~~~~~~
2022-12-22T16:03:04,261   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,261     756 |  int smallidx,  minidx, maxidx;
2022-12-22T16:03:04,261         |                 ^~~~~~
2022-12-22T16:03:04,261   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,261     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-12-22T16:03:04,261         |                         ^~~~~~
2022-12-22T16:03:04,261   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-12-22T16:03:04,262     763 |  int errval=1;
2022-12-22T16:03:04,262         |      ^~~~~~
2022-12-22T16:03:04,263   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2022-12-22T16:03:04,263   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,263    1011 |  if(size3>xfp->buf1size)
2022-12-22T16:03:04,263         |     ~~~~~^~~~~~~~~~~~~~
2022-12-22T16:03:04,265   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,265    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2022-12-22T16:03:04,265         |                     ~~~~~~~~^~~~~~~
2022-12-22T16:03:04,265   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,266    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2022-12-22T16:03:04,266         |                    ~~~~~~~~^~~~~~~
2022-12-22T16:03:04,266   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,266    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2022-12-22T16:03:04,266         |                    ~~~~~~~~^~~~~~~
2022-12-22T16:03:04,268   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,268    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2022-12-22T16:03:04,268         |                  ^
2022-12-22T16:03:04,268   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,268    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-12-22T16:03:04,268         |                   ^
2022-12-22T16:03:04,272   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,272    1275 |  if(tmp==(unsigned int)buf2[0])
2022-12-22T16:03:04,272         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,272   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,273    1001 |  int errval;
2022-12-22T16:03:04,273         |      ^~~~~~
2022-12-22T16:03:04,275   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2022-12-22T16:03:04,275   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,276    1316 |  if(size3>xfp->buf1size)
2022-12-22T16:03:04,276         |     ~~~~~^~~~~~~~~~~~~~
2022-12-22T16:03:04,277   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,277    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-12-22T16:03:04,278         |                   ^
2022-12-22T16:03:04,280   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,280    1289 |  int smallidx,  maxidx, minidx;
2022-12-22T16:03:04,280         |                         ^~~~~~
2022-12-22T16:03:04,281   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,281    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2022-12-22T16:03:04,281         |                         ^~~~~~
2022-12-22T16:03:04,281   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2022-12-22T16:03:04,281    1297 |  int errval=1;
2022-12-22T16:03:04,281         |      ^~~~~~
2022-12-22T16:03:04,282   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2022-12-22T16:03:04,282   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,283    1513 |  if(size3>xfp->buf1size) {
2022-12-22T16:03:04,283         |     ~~~~~^~~~~~~~~~~~~~
2022-12-22T16:03:04,287   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,287    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2022-12-22T16:03:04,287         |                  ^
2022-12-22T16:03:04,287   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2022-12-22T16:03:04,287    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2022-12-22T16:03:04,287         |                   ^
2022-12-22T16:03:04,291   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2022-12-22T16:03:04,291    1743 |  if(tmp==(unsigned int)buf2[0])
2022-12-22T16:03:04,291         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:04,291   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2022-12-22T16:03:04,292    1504 |  int errval=1;
2022-12-22T16:03:04,292         |      ^~~~~~
2022-12-22T16:03:06,549   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2022-12-22T16:03:06,824   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2022-12-22T16:03:07,441   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2022-12-22T16:03:07,441   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-12-22T16:03:07,441     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2022-12-22T16:03:07,442         |      ^~~
2022-12-22T16:03:07,448   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2022-12-22T16:03:07,448   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2022-12-22T16:03:07,448     418 |  int nf3 = nframes * 3;
2022-12-22T16:03:07,448         |      ^~~
2022-12-22T16:03:07,453   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2022-12-22T16:03:07,453   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2022-12-22T16:03:07,453     491 |  int reading_index = 0;
2022-12-22T16:03:07,453         |      ^~~~~~~~~~~~~
2022-12-22T16:03:07,453   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2022-12-22T16:03:07,453     492 |  int writing_index = 0;
2022-12-22T16:03:07,454         |      ^~~~~~~~~~~~~
2022-12-22T16:03:08,038   moleculekit/xtc_utils/src/xtc.cpp:532:20: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2022-12-22T16:03:08,038     532 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2022-12-22T16:03:08,038         |            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2022-12-22T16:03:08,230   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2022-12-22T16:03:08,505   In file included from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2022-12-22T16:03:08,505                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2022-12-22T16:03:08,505                    from /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2022-12-22T16:03:08,506                    from moleculekit/xtc_utils/xtc.cpp:788:
2022-12-22T16:03:08,506   /tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2022-12-22T16:03:08,506      17 | #warning "Using deprecated NumPy API, disable it with " \
2022-12-22T16:03:08,506         |  ^~~~~~~
2022-12-22T16:03:23,440   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:03:23,780   building 'moleculekit.tmalign' extension
2022-12-22T16:03:23,781   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2022-12-22T16:03:23,782   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2022-12-22T16:03:23,783   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2022-12-22T16:03:53,469   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-yzptql5j/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2022-12-22T16:04:05,967   In file included from /usr/include/c++/10/vector:72,
2022-12-22T16:04:05,967                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-12-22T16:04:05,967   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2022-12-22T16:04:05,967   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2022-12-22T16:04:05,968     426 |       vector<_Tp, _Alloc>::
2022-12-22T16:04:05,968         |       ^~~~~~~~~~~~~~~~~~~
2022-12-22T16:04:06,463   In file included from /usr/include/c++/10/vector:67,
2022-12-22T16:04:06,463                    from moleculekit/tmalign/tmalign_util.cpp:802:
2022-12-22T16:04:06,463   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2022-12-22T16:04:06,463   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-12-22T16:04:06,463    1198 |    _M_realloc_insert(end(), __x);
2022-12-22T16:04:06,463         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-22T16:04:06,464   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-12-22T16:04:06,464    1198 |    _M_realloc_insert(end(), __x);
2022-12-22T16:04:06,464         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-22T16:04:06,466   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2022-12-22T16:04:06,466    1198 |    _M_realloc_insert(end(), __x);
2022-12-22T16:04:06,467         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2022-12-22T16:04:08,618   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2022-12-22T16:04:09,131   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2022-12-22T16:04:09,132   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.5'
2022-12-22T16:04:09,132   installing to build/bdist.linux-armv7l/wheel
2022-12-22T16:04:09,132   running install
2022-12-22T16:04:09,170   running install_lib
2022-12-22T16:04:09,178   creating build/bdist.linux-armv7l
2022-12-22T16:04:09,179   creating build/bdist.linux-armv7l/wheel
2022-12-22T16:04:09,181   creating build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:09,182   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:09,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:09,188   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,189   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-22T16:04:09,190   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-22T16:04:09,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2022-12-22T16:04:09,215   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-22T16:04:09,216   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-22T16:04:09,219   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2022-12-22T16:04:09,243   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-22T16:04:09,244   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-22T16:04:09,266   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2022-12-22T16:04:09,268   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,271   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-22T16:04:09,272   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-22T16:04:09,300   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2022-12-22T16:04:09,302   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,332   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,418   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2022-12-22T16:04:09,421   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-22T16:04:09,422   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-22T16:04:09,684   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-22T16:04:09,687   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-12-22T16:04:09,688   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2022-12-22T16:04:09,690   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2022-12-22T16:04:09,692   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2022-12-22T16:04:09,697   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,702   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,705   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,711   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,713   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,716   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,719   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,720   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,722   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,724   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,726   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,728   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,730   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,732   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,735   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,739   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ME0.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,741   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,744   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,749   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,755   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,759   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,766   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,768   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,770   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,774   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,778   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,780   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,782   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,784   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,786   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,789   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,791   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,796   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,798   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,800   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,808   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,813   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,821   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,823   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,825   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,827   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,829   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,831   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,833   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,835   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/1MH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,837   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,841   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,846   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,848   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,866   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,868   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,870   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,872   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,874   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,876   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,878   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,880   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,882   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,884   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/004.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,886   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,888   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,890   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,897   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,899   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,901   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,903   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,905   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,909   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,913   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,921   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,923   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,926   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,928   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,944   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,946   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,948   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,950   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,952   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,955   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,957   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,959   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,961   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,963   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,965   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,967   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,969   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,971   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,973   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,975   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,977   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,979   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,983   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,985   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,987   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,989   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,991   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,993   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,995   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,997   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:09,999   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,001   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2022-12-22T16:04:10,005   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,007   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,009   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,015   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,025   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,027   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,032   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,034   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,037   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,039   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,041   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,046   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,050   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,053   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,055   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2022-12-22T16:04:10,058   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-22T16:04:10,059   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-22T16:04:10,062   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-22T16:04:10,064   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-22T16:04:10,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2022-12-22T16:04:10,069   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,071   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,100   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,103   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,105   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,128   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,129   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,131   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,134   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,136   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,138   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,144   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,147   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,149   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,152   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,154   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,156   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,159   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2022-12-22T16:04:10,168   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-22T16:04:10,169   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-22T16:04:10,175   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-22T16:04:10,177   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2022-12-22T16:04:10,180   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,186   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,263   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,266   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-22T16:04:10,267   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-22T16:04:10,269   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2022-12-22T16:04:10,291   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,294   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,296   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,325   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-22T16:04:10,326   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-22T16:04:10,328   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-22T16:04:10,350   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-22T16:04:10,351   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-22T16:04:10,353   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-22T16:04:10,356   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2022-12-22T16:04:10,358   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-22T16:04:10,359   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-22T16:04:10,362   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-22T16:04:10,364   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2022-12-22T16:04:10,368   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2022-12-22T16:04:10,370   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-12-22T16:04:10,371   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-22T16:04:10,372   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-22T16:04:10,375   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-22T16:04:10,377   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-22T16:04:10,379   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2022-12-22T16:04:10,381   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2022-12-22T16:04:10,383   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-22T16:04:10,384   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-22T16:04:10,387   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-22T16:04:10,389   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-22T16:04:10,391   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2022-12-22T16:04:10,395   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-22T16:04:10,396   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-22T16:04:10,398   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2022-12-22T16:04:10,400   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,434   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,436   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-22T16:04:10,437   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-12-22T16:04:10,438   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2022-12-22T16:04:10,441   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-22T16:04:10,443   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-12-22T16:04:10,444   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2022-12-22T16:04:10,451   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-22T16:04:10,473   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2022-12-22T16:04:10,475   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,480   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,513   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,538   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,539   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,543   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,545   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,548   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,550   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,553   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-22T16:04:10,554   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-22T16:04:10,558   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-22T16:04:10,561   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-22T16:04:10,563   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2022-12-22T16:04:10,565   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2022-12-22T16:04:10,568   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-22T16:04:10,569   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-22T16:04:10,593   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2022-12-22T16:04:10,596   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,598   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,601   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-22T16:04:10,602   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-22T16:04:10,604   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2022-12-22T16:04:10,629   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,630   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,633   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,635   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,638   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,642   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,645   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,648   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,651   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,654   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,657   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,659   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-22T16:04:10,660   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-22T16:04:10,663   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2022-12-22T16:04:10,665   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,667   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2022-12-22T16:04:10,669   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,671   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,674   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-22T16:04:10,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-22T16:04:10,677   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2022-12-22T16:04:10,698   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,700   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,703   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,706   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,708   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-22T16:04:10,709   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-22T16:04:10,712   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2022-12-22T16:04:10,738   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2022-12-22T16:04:10,743   running install_egg_info
2022-12-22T16:04:10,749   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.5.5-py3.9.egg-info
2022-12-22T16:04:10,763   running install_scripts
2022-12-22T16:04:10,819   creating build/bdist.linux-armv7l/wheel/moleculekit-1.5.5.dist-info/WHEEL
2022-12-22T16:04:10,822   creating '/tmp/pip-wheel-hvljm7uh/.tmp-_pg5e52k/moleculekit-1.5.5-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-22T16:04:10,826   adding 'moleculekit/__init__.py'
2022-12-22T16:04:10,827   adding 'moleculekit/_version.py'
2022-12-22T16:04:10,829   adding 'moleculekit/align.py'
2022-12-22T16:04:11,125   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:11,137   adding 'moleculekit/bondguesser.py'
2022-12-22T16:04:11,354   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:11,362   adding 'moleculekit/config.py'
2022-12-22T16:04:11,363   adding 'moleculekit/dihedral.py'
2022-12-22T16:04:11,630   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:11,641   adding 'moleculekit/home.py'
2022-12-22T16:04:11,642   adding 'moleculekit/logging.ini'
2022-12-22T16:04:11,655   adding 'moleculekit/molecule.py'
2022-12-22T16:04:11,856   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:11,864   adding 'moleculekit/opm.py'
2022-12-22T16:04:11,866   adding 'moleculekit/periodictable.py'
2022-12-22T16:04:11,868   adding 'moleculekit/pymolgraphics.py'
2022-12-22T16:04:11,869   adding 'moleculekit/rcsb.py'
2022-12-22T16:04:11,870   adding 'moleculekit/rdkitintegration.py'
2022-12-22T16:04:11,882   adding 'moleculekit/readers.py'
2022-12-22T16:04:12,466   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:12,490   adding 'moleculekit/util.py'
2022-12-22T16:04:12,491   adding 'moleculekit/version.py'
2022-12-22T16:04:12,493   adding 'moleculekit/viewer.py'
2022-12-22T16:04:12,495   adding 'moleculekit/vmd_wrapper'
2022-12-22T16:04:12,496   adding 'moleculekit/vmdgraphics.py'
2022-12-22T16:04:12,499   adding 'moleculekit/vmdviewer.py'
2022-12-22T16:04:12,706   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:12,718   adding 'moleculekit/writers.py'
2022-12-22T16:04:12,957   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:12,966   adding 'moleculekit/atomselect/__init__.py'
2022-12-22T16:04:12,967   adding 'moleculekit/atomselect/analyze.py'
2022-12-22T16:04:12,970   adding 'moleculekit/atomselect/atomselect.py'
2022-12-22T16:04:12,972   adding 'moleculekit/atomselect/languageparser.py'
2022-12-22T16:04:13,056   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2022-12-22T16:04:13,066   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2022-12-22T16:04:13,139   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2022-12-22T16:04:13,146   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2022-12-22T16:04:13,222   adding 'moleculekit/distance_utils/distance_utils.cpp'
2022-12-22T16:04:13,230   adding 'moleculekit/distance_utils/distance_utils.pyx'
2022-12-22T16:04:13,232   adding 'moleculekit/interactions/__init__.py'
2022-12-22T16:04:13,485   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:13,725   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:13,736   adding 'moleculekit/interactions/interactions.py'
2022-12-22T16:04:13,988   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:14,247   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2022-12-22T16:04:14,328   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2022-12-22T16:04:14,335   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2022-12-22T16:04:14,408   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2022-12-22T16:04:14,415   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2022-12-22T16:04:14,488   adding 'moleculekit/interactions/pipi/pipi.cpp'
2022-12-22T16:04:14,496   adding 'moleculekit/interactions/pipi/pipi.pyx'
2022-12-22T16:04:14,568   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2022-12-22T16:04:14,576   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2022-12-22T16:04:14,644   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2022-12-22T16:04:14,651   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2022-12-22T16:04:14,653   adding 'moleculekit/pdbx/__init__.py'
2022-12-22T16:04:14,657   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2022-12-22T16:04:14,659   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2022-12-22T16:04:14,662   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2022-12-22T16:04:14,663   adding 'moleculekit/pdbx/reader/__init__.py'
2022-12-22T16:04:14,665   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2022-12-22T16:04:14,667   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2022-12-22T16:04:14,669   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2022-12-22T16:04:14,670   adding 'moleculekit/pdbx/tests/__init__.py'
2022-12-22T16:04:14,672   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2022-12-22T16:04:14,673   adding 'moleculekit/pdbx/writer/__init__.py'
2022-12-22T16:04:14,675   adding 'moleculekit/ply/__init__.py'
2022-12-22T16:04:14,679   adding 'moleculekit/ply/lex.py'
2022-12-22T16:04:14,691   adding 'moleculekit/ply/yacc.py'
2022-12-22T16:04:14,694   adding 'moleculekit/projections/__init__.py'
2022-12-22T16:04:14,696   adding 'moleculekit/projections/metriccoordinate.py'
2022-12-22T16:04:14,699   adding 'moleculekit/projections/metricdihedral.py'
2022-12-22T16:04:14,703   adding 'moleculekit/projections/metricdistance.py'
2022-12-22T16:04:14,705   adding 'moleculekit/projections/metricfluctuation.py'
2022-12-22T16:04:14,707   adding 'moleculekit/projections/metricgyration.py'
2022-12-22T16:04:14,711   adding 'moleculekit/projections/metricplumed2.py'
2022-12-22T16:04:14,713   adding 'moleculekit/projections/metricrmsd.py'
2022-12-22T16:04:14,715   adding 'moleculekit/projections/metricsasa.py'
2022-12-22T16:04:14,717   adding 'moleculekit/projections/metricsecondarystructure.py'
2022-12-22T16:04:14,719   adding 'moleculekit/projections/metricshell.py'
2022-12-22T16:04:14,721   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2022-12-22T16:04:14,722   adding 'moleculekit/projections/metrictmscore.py'
2022-12-22T16:04:14,724   adding 'moleculekit/projections/projection.py'
2022-12-22T16:04:14,726   adding 'moleculekit/projections/util.py'
2022-12-22T16:04:14,728   adding 'moleculekit/share/ALA.cif'
2022-12-22T16:04:14,729   adding 'moleculekit/share/backbone.cif'
2022-12-22T16:04:16,059   adding 'moleculekit/share/opm_sequences.json'
2022-12-22T16:04:16,146   adding 'moleculekit/share/atomselect/atomselect.json'
2022-12-22T16:04:16,152   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2022-12-22T16:04:16,153   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2022-12-22T16:04:16,154   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2022-12-22T16:04:16,155   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2022-12-22T16:04:16,157   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2022-12-22T16:04:16,158   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2022-12-22T16:04:16,159   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2022-12-22T16:04:16,160   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2022-12-22T16:04:16,162   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2022-12-22T16:04:16,163   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2022-12-22T16:04:16,164   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2022-12-22T16:04:16,166   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2022-12-22T16:04:16,167   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2022-12-22T16:04:16,168   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2022-12-22T16:04:16,169   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2022-12-22T16:04:16,171   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2022-12-22T16:04:16,172   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2022-12-22T16:04:16,173   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2022-12-22T16:04:16,175   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2022-12-22T16:04:16,176   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2022-12-22T16:04:16,178   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2022-12-22T16:04:16,179   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2022-12-22T16:04:16,180   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2022-12-22T16:04:16,181   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2022-12-22T16:04:16,183   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2022-12-22T16:04:16,184   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2022-12-22T16:04:16,185   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2022-12-22T16:04:16,187   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2022-12-22T16:04:16,188   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2022-12-22T16:04:16,189   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2022-12-22T16:04:16,191   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2022-12-22T16:04:16,192   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2022-12-22T16:04:16,193   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2022-12-22T16:04:16,195   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2022-12-22T16:04:16,196   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2022-12-22T16:04:16,197   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2022-12-22T16:04:16,199   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2022-12-22T16:04:16,200   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2022-12-22T16:04:16,201   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2022-12-22T16:04:16,203   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2022-12-22T16:04:16,204   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2022-12-22T16:04:16,205   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2022-12-22T16:04:16,207   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2022-12-22T16:04:16,208   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2022-12-22T16:04:16,209   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2022-12-22T16:04:16,210   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2022-12-22T16:04:16,212   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2022-12-22T16:04:16,213   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2022-12-22T16:04:16,215   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2022-12-22T16:04:16,216   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2022-12-22T16:04:16,218   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2022-12-22T16:04:16,219   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2022-12-22T16:04:16,220   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2022-12-22T16:04:16,222   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2022-12-22T16:04:16,223   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2022-12-22T16:04:16,224   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2022-12-22T16:04:16,225   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2022-12-22T16:04:16,227   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2022-12-22T16:04:16,228   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2022-12-22T16:04:16,229   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2022-12-22T16:04:16,231   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2022-12-22T16:04:16,232   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2022-12-22T16:04:16,233   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2022-12-22T16:04:16,235   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2022-12-22T16:04:16,236   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2022-12-22T16:04:16,237   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2022-12-22T16:04:16,239   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2022-12-22T16:04:16,240   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2022-12-22T16:04:16,241   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2022-12-22T16:04:16,242   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2022-12-22T16:04:16,244   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2022-12-22T16:04:16,245   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2022-12-22T16:04:16,246   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2022-12-22T16:04:16,248   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2022-12-22T16:04:16,249   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2022-12-22T16:04:16,250   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2022-12-22T16:04:16,251   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2022-12-22T16:04:16,253   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2022-12-22T16:04:16,254   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2022-12-22T16:04:16,255   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2022-12-22T16:04:16,257   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2022-12-22T16:04:16,258   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2022-12-22T16:04:16,259   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2022-12-22T16:04:16,261   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2022-12-22T16:04:16,262   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2022-12-22T16:04:16,263   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2022-12-22T16:04:16,265   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2022-12-22T16:04:16,266   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2022-12-22T16:04:16,267   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2022-12-22T16:04:16,269   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2022-12-22T16:04:16,270   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2022-12-22T16:04:16,271   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2022-12-22T16:04:16,272   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2022-12-22T16:04:16,274   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2022-12-22T16:04:16,275   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2022-12-22T16:04:16,276   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2022-12-22T16:04:16,278   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2022-12-22T16:04:16,279   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2022-12-22T16:04:16,280   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2022-12-22T16:04:16,282   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2022-12-22T16:04:16,283   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2022-12-22T16:04:16,284   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2022-12-22T16:04:16,286   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2022-12-22T16:04:16,287   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2022-12-22T16:04:16,288   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2022-12-22T16:04:16,290   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2022-12-22T16:04:16,291   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2022-12-22T16:04:16,292   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2022-12-22T16:04:16,293   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2022-12-22T16:04:16,295   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2022-12-22T16:04:16,296   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2022-12-22T16:04:16,297   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2022-12-22T16:04:16,299   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2022-12-22T16:04:16,300   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2022-12-22T16:04:16,301   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2022-12-22T16:04:16,303   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2022-12-22T16:04:16,304   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2022-12-22T16:04:16,305   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2022-12-22T16:04:16,307   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2022-12-22T16:04:16,308   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2022-12-22T16:04:16,309   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2022-12-22T16:04:16,331   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2022-12-22T16:04:16,332   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2022-12-22T16:04:16,333   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2022-12-22T16:04:16,335   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2022-12-22T16:04:16,336   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2022-12-22T16:04:16,338   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2022-12-22T16:04:16,339   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2022-12-22T16:04:16,340   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2022-12-22T16:04:16,342   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2022-12-22T16:04:16,343   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2022-12-22T16:04:16,344   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2022-12-22T16:04:16,346   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2022-12-22T16:04:16,350   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2022-12-22T16:04:16,352   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2022-12-22T16:04:16,353   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2022-12-22T16:04:16,354   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2022-12-22T16:04:16,356   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2022-12-22T16:04:16,357   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2022-12-22T16:04:16,358   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2022-12-22T16:04:16,360   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2022-12-22T16:04:16,361   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2022-12-22T16:04:16,362   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2022-12-22T16:04:16,363   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2022-12-22T16:04:16,365   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2022-12-22T16:04:16,408   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2022-12-22T16:04:16,410   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2022-12-22T16:04:16,411   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2022-12-22T16:04:16,412   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2022-12-22T16:04:16,413   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2022-12-22T16:04:16,415   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2022-12-22T16:04:16,416   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2022-12-22T16:04:16,418   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2022-12-22T16:04:16,419   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2022-12-22T16:04:16,420   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2022-12-22T16:04:16,422   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2022-12-22T16:04:16,423   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2022-12-22T16:04:16,425   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2022-12-22T16:04:16,426   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2022-12-22T16:04:16,427   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2022-12-22T16:04:16,429   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2022-12-22T16:04:16,430   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2022-12-22T16:04:16,431   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2022-12-22T16:04:16,433   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2022-12-22T16:04:16,434   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2022-12-22T16:04:16,435   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2022-12-22T16:04:16,436   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2022-12-22T16:04:16,438   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2022-12-22T16:04:16,439   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2022-12-22T16:04:16,440   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2022-12-22T16:04:16,442   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2022-12-22T16:04:16,443   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2022-12-22T16:04:16,444   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2022-12-22T16:04:16,446   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2022-12-22T16:04:16,447   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2022-12-22T16:04:16,449   adding 'moleculekit/smallmol/__init__.py'
2022-12-22T16:04:16,454   adding 'moleculekit/smallmol/smallmol.py'
2022-12-22T16:04:16,457   adding 'moleculekit/smallmol/smallmollib.py'
2022-12-22T16:04:16,459   adding 'moleculekit/smallmol/test_smallmol.py'
2022-12-22T16:04:16,460   adding 'moleculekit/smallmol/test_smallmollib.py'
2022-12-22T16:04:16,462   adding 'moleculekit/smallmol/util.py'
2022-12-22T16:04:16,464   adding 'moleculekit/smallmol/tools/__init__.py'
2022-12-22T16:04:16,466   adding 'moleculekit/smallmol/tools/clustering.py'
2022-12-22T16:04:16,468   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2022-12-22T16:04:16,469   adding 'moleculekit/smallmol/tools/test_tools.py'
2022-12-22T16:04:16,540   adding 'moleculekit/tmalign/tmalign_util.cpp'
2022-12-22T16:04:16,548   adding 'moleculekit/tmalign/tmalign_util.pyx'
2022-12-22T16:04:16,549   adding 'moleculekit/tmalign/tmalignlib.pxd'
2022-12-22T16:04:16,551   adding 'moleculekit/tmalign/include/TMAlign.h'
2022-12-22T16:04:16,569   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2022-12-22T16:04:16,572   adding 'moleculekit/tools/__init__.py'
2022-12-22T16:04:16,574   adding 'moleculekit/tools/atomtyper.py'
2022-12-22T16:04:16,576   adding 'moleculekit/tools/autosegment.py'
2022-12-22T16:04:16,578   adding 'moleculekit/tools/crystalpacking.py'
2022-12-22T16:04:16,581   adding 'moleculekit/tools/detect.py'
2022-12-22T16:04:16,583   adding 'moleculekit/tools/docking.py'
2022-12-22T16:04:16,585   adding 'moleculekit/tools/graphalignment.py'
2022-12-22T16:04:16,586   adding 'moleculekit/tools/hhblitsprofile.py'
2022-12-22T16:04:16,588   adding 'moleculekit/tools/moleculechecks.py'
2022-12-22T16:04:16,594   adding 'moleculekit/tools/preparation.py'
2022-12-22T16:04:16,597   adding 'moleculekit/tools/preparation_customres.py'
2022-12-22T16:04:16,599   adding 'moleculekit/tools/sequencestructuralalignment.py'
2022-12-22T16:04:16,602   adding 'moleculekit/tools/voxeldescriptors.py'
2022-12-22T16:04:16,604   adding 'moleculekit/tools/obabel_tools/__init__.py'
2022-12-22T16:04:16,605   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2022-12-22T16:04:16,675   adding 'moleculekit/wrapping/wrapping.cpp'
2022-12-22T16:04:16,682   adding 'moleculekit/wrapping/wrapping.pyx'
2022-12-22T16:04:16,753   adding 'moleculekit/xtc_utils/xtc.cpp'
2022-12-22T16:04:16,760   adding 'moleculekit/xtc_utils/xtc.pyx'
2022-12-22T16:04:16,761   adding 'moleculekit/xtc_utils/xtclib.pxd'
2022-12-22T16:04:16,765   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2022-12-22T16:04:16,766   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2022-12-22T16:04:16,768   adding 'moleculekit/xtc_utils/include/xtc.h'
2022-12-22T16:04:16,775   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2022-12-22T16:04:16,777   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2022-12-22T16:04:16,779   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2022-12-22T16:04:16,781   adding 'moleculekit-1.5.5.dist-info/LICENSE'
2022-12-22T16:04:16,783   adding 'moleculekit-1.5.5.dist-info/METADATA'
2022-12-22T16:04:16,784   adding 'moleculekit-1.5.5.dist-info/WHEEL'
2022-12-22T16:04:16,785   adding 'moleculekit-1.5.5.dist-info/top_level.txt'
2022-12-22T16:04:16,790   adding 'moleculekit-1.5.5.dist-info/RECORD'
2022-12-22T16:04:16,966   removing build/bdist.linux-armv7l/wheel
2022-12-22T16:04:17,310   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2022-12-22T16:04:17,580   Created wheel for moleculekit: filename=moleculekit-1.5.5-cp39-cp39-linux_armv7l.whl size=11483275 sha256=fcac9ef91095d0a7d660dd126ceb19282bfb11fa015d6e8cb3c9da09e65ffc21
2022-12-22T16:04:17,581   Stored in directory: /tmp/pip-ephem-wheel-cache-63yfunmw/wheels/95/9a/1a/f1386707b1370253208b823b92c2c57e0782eef1f2e0c08a22
2022-12-22T16:04:17,609 Successfully built moleculekit
2022-12-22T16:04:17,951 Removed build tracker: '/tmp/pip-build-tracker-c2e2zehu'