2022-12-23T10:55:36,481 Created temporary directory: /tmp/pip-ephem-wheel-cache-nivnlk64
2022-12-23T10:55:36,484 Created temporary directory: /tmp/pip-build-tracker-mm3fw4b1
2022-12-23T10:55:36,484 Initialized build tracking at /tmp/pip-build-tracker-mm3fw4b1
2022-12-23T10:55:36,484 Created build tracker: /tmp/pip-build-tracker-mm3fw4b1
2022-12-23T10:55:36,484 Entered build tracker: /tmp/pip-build-tracker-mm3fw4b1
2022-12-23T10:55:36,485 Created temporary directory: /tmp/pip-wheel-7aysm1in
2022-12-23T10:55:36,488 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2022-12-23T10:55:36,490 Created temporary directory: /tmp/pip-ephem-wheel-cache-04ryl3e7
2022-12-23T10:55:36,517 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2022-12-23T10:55:36,521 2 location(s) to search for versions of capice:
2022-12-23T10:55:36,521 * https://pypi.org/simple/capice/
2022-12-23T10:55:36,521 * https://www.piwheels.org/simple/capice/
2022-12-23T10:55:36,521 Fetching project page and analyzing links: https://pypi.org/simple/capice/
2022-12-23T10:55:36,521 Getting page https://pypi.org/simple/capice/
2022-12-23T10:55:36,523 Found index url https://pypi.org/simple
2022-12-23T10:55:36,575 Fetched page https://pypi.org/simple/capice/ as application/vnd.pypi.simple.v1+json
2022-12-23T10:55:36,579   Found link https://files.pythonhosted.org/packages/2b/cf/eeb11d53ea46d9463d108113249f8a5b8c3023b3822835fd2579c3351924/capice-3.0.0rc0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.7), version: 3.0.0rc0
2022-12-23T10:55:36,580   Found link https://files.pythonhosted.org/packages/c9/09/fdf73572fc6b25f60b4a5b2729454b1560abff6dd9f7907f45d86bd0ec88/capice-3.0.0rc1.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc1
2022-12-23T10:55:36,580   Found link https://files.pythonhosted.org/packages/93/94/a86e20a50a6ae585d21896e5348b2ee157c3a7f49a22e53a014884d069d1/capice-3.0.0rc2.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc2
2022-12-23T10:55:36,581   Found link https://files.pythonhosted.org/packages/09/dc/8e44c3e88c1ee6402c17fb3c06b4e56d7580e55dd384f3c6f5c0c9f539ef/capice-3.0.0rc3.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc3
2022-12-23T10:55:36,582   Found link https://files.pythonhosted.org/packages/d4/f2/05c3cdda4c711aaddea306235e5b860009d706ba41652ce147ab893aded6/capice-3.0.0rc4.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0rc4
2022-12-23T10:55:36,582   Found link https://files.pythonhosted.org/packages/7a/9f/ef01e39c2096b2cb591e626e9f2631a1226675292da6dd00f805fc832caa/capice-3.0.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.0.0
2022-12-23T10:55:36,583   Found link https://files.pythonhosted.org/packages/d4/b4/16c7d979e9bbc625d3914a08da81d0ad0b7960e87b555bb193f5aa3e3d6a/capice-3.1.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.0
2022-12-23T10:55:36,583   Found link https://files.pythonhosted.org/packages/64/e1/52f85026c4aa93f4a09f2dc8b517abb86d471a8e6b202533c63780fa70e1/capice-3.1.1.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.1
2022-12-23T10:55:36,584   Found link https://files.pythonhosted.org/packages/1d/b1/69553bd909b8e972ebf1912f60e71d4ccfa44b221b4ec7d1ae1d5b5c8165/capice-3.1.2.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.1.2
2022-12-23T10:55:36,584   Found link https://files.pythonhosted.org/packages/6b/2e/1bae984c4c990f95db34a0d12b327083437649d05d93606618d6030b8cfb/capice-3.2.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.2.0
2022-12-23T10:55:36,585   Found link https://files.pythonhosted.org/packages/f2/46/3fed1bfa6a7e413dda2dcacc72ebcba5cd27e81a300314e8c6b440ba0652/capice-3.2.1.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.2.1
2022-12-23T10:55:36,585   Found link https://files.pythonhosted.org/packages/8e/ec/a0d20fce261cadb53b7674ce6d83f21587812c3d7ed4552c2876e32401b2/capice-3.3.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 3.3.0
2022-12-23T10:55:36,586   Found link https://files.pythonhosted.org/packages/e4/39/4c67eadadb4e9ee8b008065c117d11eed66c173c8f03ac1a66c0c80230b0/capice-4.0.0rc1.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0rc1
2022-12-23T10:55:36,587   Found link https://files.pythonhosted.org/packages/c8/d4/0b8b9a2459e3bf9ac9ee9fbbfcef0cf633423cd1164d247ef5b35e6bcc1d/capice-4.0.0rc2.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0rc2
2022-12-23T10:55:36,587   Found link https://files.pythonhosted.org/packages/ab/ea/b25218d9cbed242679b75aaec27f079eb7271c1338a215fba25f82757b69/capice-4.0.0rc3.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0rc3
2022-12-23T10:55:36,588   Found link https://files.pythonhosted.org/packages/44/b9/874d875171dacc166a20b55344da900e3b48b2fac242aaa4e3de80cb542c/capice-4.0.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 4.0.0
2022-12-23T10:55:36,588   Found link https://files.pythonhosted.org/packages/4e/78/45d9b78adf34a83e1d0868b8da615a315a94d4ca9c3765ec201787a4df43/capice-5.0.0.tar.gz (from https://pypi.org/simple/capice/) (requires-python:>=3.8), version: 5.0.0
2022-12-23T10:55:36,589 Fetching project page and analyzing links: https://www.piwheels.org/simple/capice/
2022-12-23T10:55:36,589 Getting page https://www.piwheels.org/simple/capice/
2022-12-23T10:55:36,590 Found index url https://www.piwheels.org/simple
2022-12-23T10:55:36,812 Fetched page https://www.piwheels.org/simple/capice/ as text/html
2022-12-23T10:55:36,817   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-4.0.0-py3-none-any.whl#sha256=ce4003f7b2d92c69f5096e472af55dff5d10864006ef1fbef028b5ab884bd7d4 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,817   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-4.0.0rc3-py3-none-any.whl#sha256=65ae05d21fe56f15b779ccd358ade7c4d0485aa382fdf139afeddb23204df0aa (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,818   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-4.0.0rc2-py3-none-any.whl#sha256=9edddaa9ec8bdd22de63608d73b375f392d24b4b24a3140e339b90f4526b336f (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,818   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-4.0.0rc1-py3-none-any.whl#sha256=2ffdc4d32ff14ea03e7417e65ac6f49c3fb84ebc8a2b0e904801a4762469b21c (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,818   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.3.0-py3-none-any.whl#sha256=b9a9a3cdfdb1ab474a6183c643babd3470fa84e8c5e3b2c8099a9ffee1c41956 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,818   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.2.1-py3-none-any.whl#sha256=caad9b489f7b29a386b2dce7cb3e01d94d301d2b01ba16e3e094c7aa91435063 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,818   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.2.0-py3-none-any.whl#sha256=b6968da8c90315bcb78449563ad20ff306de8792c485fb03fe2eed8cf19d9f8f (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,819   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.1.1-py3-none-any.whl#sha256=4a76c336e6de10af5b82b9e4beb6bb7c2c8eaf792b1b9ab51e6aa14e45068559 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,819   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.1.0-py3-none-any.whl#sha256=ca32fea76a4d432bfaf9ba50b17860b5e1859f71b8ee95ccc9cee625690e6217 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,819   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0-py3-none-any.whl#sha256=822a9c4b54c3814a1879371edfcd207b4c59c26e284a85b4367d4f9c0e070a8b (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,819   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc4-py3-none-any.whl#sha256=b8174ee252046b7075aa5b0bff762c95a39bef20b98a032f842c74b1e7bf9a29 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,820   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc3-py3-none-any.whl#sha256=4ee7f781a7a6edacfb38af661fab250bdb707a6f63b57c56612ff132ceb55c74 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,820   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc2-py3-none-any.whl#sha256=f67afcd30fc1b242beb1b3631528be28745036179d8f8ff75fdd07d13c163206 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,820   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc1-py3-none-any.whl#sha256=1f1a3830a436ef9f9f34370a93dea81e04b8e4761fd8ecae8ce10955c1dddac2 (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.8)
2022-12-23T10:55:36,820   Skipping link: No binaries permitted for capice: https://www.piwheels.org/simple/capice/capice-3.0.0rc0-py3-none-any.whl#sha256=db7e870e65a264aa8b90e67c7ad2b62ed2662d850fac021fe20eafa759ccd21a (from https://www.piwheels.org/simple/capice/) (requires-python:>=3.7)
2022-12-23T10:55:36,820 Skipping link: not a file: https://www.piwheels.org/simple/capice/
2022-12-23T10:55:36,821 Skipping link: not a file: https://pypi.org/simple/capice/
2022-12-23T10:55:36,840 Given no hashes to check 1 links for project 'capice': discarding no candidates
2022-12-23T10:55:36,857 Collecting capice==5.0.0
2022-12-23T10:55:36,859   Created temporary directory: /tmp/pip-unpack-bfr14evg
2022-12-23T10:55:37,057   Downloading capice-5.0.0.tar.gz (38 kB)
2022-12-23T10:55:37,202   Added capice==5.0.0 from https://files.pythonhosted.org/packages/4e/78/45d9b78adf34a83e1d0868b8da615a315a94d4ca9c3765ec201787a4df43/capice-5.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-mm3fw4b1'
2022-12-23T10:55:37,203   Running setup.py (path:/tmp/pip-wheel-7aysm1in/capice_5b6abfe83b3e4333814d8cde74a582e3/setup.py) egg_info for package capice
2022-12-23T10:55:37,204   Created temporary directory: /tmp/pip-pip-egg-info-lc4yk0ss
2022-12-23T10:55:37,204   Preparing metadata (setup.py): started
2022-12-23T10:55:37,205   Running command python setup.py egg_info
2022-12-23T10:55:38,368   running egg_info
2022-12-23T10:55:38,370   creating /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info
2022-12-23T10:55:38,397   writing /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/PKG-INFO
2022-12-23T10:55:38,400   writing dependency_links to /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/dependency_links.txt
2022-12-23T10:55:38,402   writing entry points to /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/entry_points.txt
2022-12-23T10:55:38,404   writing requirements to /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/requires.txt
2022-12-23T10:55:38,405   writing top-level names to /tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/top_level.txt
2022-12-23T10:55:38,406   writing manifest file '/tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/SOURCES.txt'
2022-12-23T10:55:38,496   reading manifest file '/tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/SOURCES.txt'
2022-12-23T10:55:38,498   adding license file 'LICENSE'
2022-12-23T10:55:38,502   writing manifest file '/tmp/pip-pip-egg-info-lc4yk0ss/capice.egg-info/SOURCES.txt'
2022-12-23T10:55:38,619   Preparing metadata (setup.py): finished with status 'done'
2022-12-23T10:55:38,626   Source in /tmp/pip-wheel-7aysm1in/capice_5b6abfe83b3e4333814d8cde74a582e3 has version 5.0.0, which satisfies requirement capice==5.0.0 from https://files.pythonhosted.org/packages/4e/78/45d9b78adf34a83e1d0868b8da615a315a94d4ca9c3765ec201787a4df43/capice-5.0.0.tar.gz
2022-12-23T10:55:38,627   Removed capice==5.0.0 from https://files.pythonhosted.org/packages/4e/78/45d9b78adf34a83e1d0868b8da615a315a94d4ca9c3765ec201787a4df43/capice-5.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-mm3fw4b1'
2022-12-23T10:55:38,635 Created temporary directory: /tmp/pip-unpack-pow_7g0p
2022-12-23T10:55:38,636 Building wheels for collected packages: capice
2022-12-23T10:55:38,641   Created temporary directory: /tmp/pip-wheel-q9hbgve0
2022-12-23T10:55:38,641   Building wheel for capice (setup.py): started
2022-12-23T10:55:38,642   Destination directory: /tmp/pip-wheel-q9hbgve0
2022-12-23T10:55:38,642   Running command python setup.py bdist_wheel
2022-12-23T10:55:39,760   running bdist_wheel
2022-12-23T10:55:40,064   running build
2022-12-23T10:55:40,064   running build_py
2022-12-23T10:55:40,095   creating build
2022-12-23T10:55:40,095   creating build/lib
2022-12-23T10:55:40,096   creating build/lib/molgenis
2022-12-23T10:55:40,096   creating build/lib/molgenis/capice
2022-12-23T10:55:40,097   copying src/molgenis/capice/main_capice.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,100   copying src/molgenis/capice/main_predict.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,102   copying src/molgenis/capice/main_explain.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,104   copying src/molgenis/capice/main_train.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,106   copying src/molgenis/capice/capice.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,108   copying src/molgenis/capice/__init__.py -> build/lib/molgenis/capice
2022-12-23T10:55:40,110   creating build/lib/molgenis/capice/core
2022-12-23T10:55:40,111   copying src/molgenis/capice/core/args_handler.py -> build/lib/molgenis/capice/core
2022-12-23T10:55:40,113   copying src/molgenis/capice/core/capice_exporter.py -> build/lib/molgenis/capice/core
2022-12-23T10:55:40,115   copying src/molgenis/capice/core/logger.py -> build/lib/molgenis/capice/core
2022-12-23T10:55:40,117   copying src/molgenis/capice/core/capice_manager.py -> build/lib/molgenis/capice/core
2022-12-23T10:55:40,119   copying src/molgenis/capice/core/__init__.py -> build/lib/molgenis/capice/core
2022-12-23T10:55:40,121   creating build/lib/molgenis/capice/validators
2022-12-23T10:55:40,122   copying src/molgenis/capice/validators/input_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,124   copying src/molgenis/capice/validators/post_file_parse_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,126   copying src/molgenis/capice/validators/model_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,128   copying src/molgenis/capice/validators/property_type_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,130   copying src/molgenis/capice/validators/version_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,131   copying src/molgenis/capice/validators/__init__.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,133   copying src/molgenis/capice/validators/post_vep_processing_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,134   copying src/molgenis/capice/validators/predict_validator.py -> build/lib/molgenis/capice/validators
2022-12-23T10:55:40,137   creating build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,138   copying src/molgenis/capice/utilities/load_file_postprocessor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,140   copying src/molgenis/capice/utilities/manual_vep_processor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,142   copying src/molgenis/capice/utilities/dynamic_loader.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,144   copying src/molgenis/capice/utilities/categorical_processor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,146   copying src/molgenis/capice/utilities/custom_logging_filter.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,148   copying src/molgenis/capice/utilities/column_utils.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,149   copying src/molgenis/capice/utilities/enums.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,151   copying src/molgenis/capice/utilities/class_suggestor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,153   copying src/molgenis/capice/utilities/__init__.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,155   copying src/molgenis/capice/utilities/predictor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,156   copying src/molgenis/capice/utilities/input_parser.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,158   copying src/molgenis/capice/utilities/input_processor.py -> build/lib/molgenis/capice/utilities
2022-12-23T10:55:40,161   creating build/lib/molgenis/capice/vep
2022-12-23T10:55:40,162   copying src/molgenis/capice/vep/amino_acids.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,164   copying src/molgenis/capice/vep/consequence.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,165   copying src/molgenis/capice/vep/cdna_position.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,167   copying src/molgenis/capice/vep/template_sift_polyphen.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,169   copying src/molgenis/capice/vep/poly_phen.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,170   copying src/molgenis/capice/vep/sift.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,172   copying src/molgenis/capice/vep/seq.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,174   copying src/molgenis/capice/vep/__init__.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,175   copying src/molgenis/capice/vep/cds_position.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,176   copying src/molgenis/capice/vep/length.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,178   copying src/molgenis/capice/vep/template.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,180   copying src/molgenis/capice/vep/protein_position.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,182   copying src/molgenis/capice/vep/type.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,183   copying src/molgenis/capice/vep/template_position.py -> build/lib/molgenis/capice/vep
2022-12-23T10:55:40,185   creating build/lib/molgenis/capice/cli
2022-12-23T10:55:40,186   copying src/molgenis/capice/cli/args_handler_train.py -> build/lib/molgenis/capice/cli
2022-12-23T10:55:40,188   copying src/molgenis/capice/cli/args_handler_explain.py -> build/lib/molgenis/capice/cli
2022-12-23T10:55:40,190   copying src/molgenis/capice/cli/args_handler_parent.py -> build/lib/molgenis/capice/cli
2022-12-23T10:55:40,192   copying src/molgenis/capice/cli/__init__.py -> build/lib/molgenis/capice/cli
2022-12-23T10:55:40,194   copying src/molgenis/capice/cli/args_handler_predict.py -> build/lib/molgenis/capice/cli
2022-12-23T10:55:40,232   /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2022-12-23T10:55:40,232     warnings.warn(
2022-12-23T10:55:40,259   installing to build/bdist.linux-armv7l/wheel
2022-12-23T10:55:40,260   running install
2022-12-23T10:55:40,284   running install_lib
2022-12-23T10:55:40,313   creating build/bdist.linux-armv7l
2022-12-23T10:55:40,313   creating build/bdist.linux-armv7l/wheel
2022-12-23T10:55:40,314   creating build/bdist.linux-armv7l/wheel/molgenis
2022-12-23T10:55:40,316   creating build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,317   copying build/lib/molgenis/capice/main_capice.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,319   copying build/lib/molgenis/capice/main_predict.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,322   creating build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,323   copying build/lib/molgenis/capice/core/args_handler.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,325   copying build/lib/molgenis/capice/core/capice_exporter.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,326   copying build/lib/molgenis/capice/core/logger.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,329   copying build/lib/molgenis/capice/core/capice_manager.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,331   copying build/lib/molgenis/capice/core/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/core
2022-12-23T10:55:40,332   copying build/lib/molgenis/capice/main_explain.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,335   creating build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,336   copying build/lib/molgenis/capice/validators/input_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,338   copying build/lib/molgenis/capice/validators/post_file_parse_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,340   copying build/lib/molgenis/capice/validators/model_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,342   copying build/lib/molgenis/capice/validators/property_type_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,343   copying build/lib/molgenis/capice/validators/version_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,345   copying build/lib/molgenis/capice/validators/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,347   copying build/lib/molgenis/capice/validators/post_vep_processing_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,348   copying build/lib/molgenis/capice/validators/predict_validator.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/validators
2022-12-23T10:55:40,350   copying build/lib/molgenis/capice/main_train.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,353   creating build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,354   copying build/lib/molgenis/capice/utilities/load_file_postprocessor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,356   copying build/lib/molgenis/capice/utilities/manual_vep_processor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,358   copying build/lib/molgenis/capice/utilities/dynamic_loader.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,360   copying build/lib/molgenis/capice/utilities/categorical_processor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,362   copying build/lib/molgenis/capice/utilities/custom_logging_filter.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,364   copying build/lib/molgenis/capice/utilities/column_utils.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,366   copying build/lib/molgenis/capice/utilities/enums.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,368   copying build/lib/molgenis/capice/utilities/class_suggestor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,369   copying build/lib/molgenis/capice/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,371   copying build/lib/molgenis/capice/utilities/predictor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,373   copying build/lib/molgenis/capice/utilities/input_parser.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,375   copying build/lib/molgenis/capice/utilities/input_processor.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/utilities
2022-12-23T10:55:40,377   copying build/lib/molgenis/capice/capice.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,379   creating build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,380   copying build/lib/molgenis/capice/vep/amino_acids.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,382   copying build/lib/molgenis/capice/vep/consequence.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,384   copying build/lib/molgenis/capice/vep/cdna_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,385   copying build/lib/molgenis/capice/vep/template_sift_polyphen.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,387   copying build/lib/molgenis/capice/vep/poly_phen.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,389   copying build/lib/molgenis/capice/vep/sift.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,391   copying build/lib/molgenis/capice/vep/seq.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,392   copying build/lib/molgenis/capice/vep/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,394   copying build/lib/molgenis/capice/vep/cds_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,395   copying build/lib/molgenis/capice/vep/length.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,397   copying build/lib/molgenis/capice/vep/template.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,399   copying build/lib/molgenis/capice/vep/protein_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,401   copying build/lib/molgenis/capice/vep/type.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,402   copying build/lib/molgenis/capice/vep/template_position.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/vep
2022-12-23T10:55:40,404   creating build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,405   copying build/lib/molgenis/capice/cli/args_handler_train.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,407   copying build/lib/molgenis/capice/cli/args_handler_explain.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,409   copying build/lib/molgenis/capice/cli/args_handler_parent.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,411   copying build/lib/molgenis/capice/cli/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,413   copying build/lib/molgenis/capice/cli/args_handler_predict.py -> build/bdist.linux-armv7l/wheel/molgenis/capice/cli
2022-12-23T10:55:40,415   copying build/lib/molgenis/capice/__init__.py -> build/bdist.linux-armv7l/wheel/molgenis/capice
2022-12-23T10:55:40,416   running install_egg_info
2022-12-23T10:55:40,487   running egg_info
2022-12-23T10:55:40,514   writing src/capice.egg-info/PKG-INFO
2022-12-23T10:55:40,517   writing dependency_links to src/capice.egg-info/dependency_links.txt
2022-12-23T10:55:40,519   writing entry points to src/capice.egg-info/entry_points.txt
2022-12-23T10:55:40,520   writing requirements to src/capice.egg-info/requires.txt
2022-12-23T10:55:40,521   writing top-level names to src/capice.egg-info/top_level.txt
2022-12-23T10:55:40,556   reading manifest file 'src/capice.egg-info/SOURCES.txt'
2022-12-23T10:55:40,559   adding license file 'LICENSE'
2022-12-23T10:55:40,563   writing manifest file 'src/capice.egg-info/SOURCES.txt'
2022-12-23T10:55:40,565   Copying src/capice.egg-info to build/bdist.linux-armv7l/wheel/capice-5.0.0-py3.9.egg-info
2022-12-23T10:55:40,577   running install_scripts
2022-12-23T10:55:40,663   adding license file "LICENSE" (matched pattern "LICEN[CS]E*")
2022-12-23T10:55:40,668   creating build/bdist.linux-armv7l/wheel/capice-5.0.0.dist-info/WHEEL
2022-12-23T10:55:40,671   creating '/tmp/pip-wheel-q9hbgve0/capice-5.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2022-12-23T10:55:40,675   adding 'molgenis/capice/__init__.py'
2022-12-23T10:55:40,676   adding 'molgenis/capice/capice.py'
2022-12-23T10:55:40,678   adding 'molgenis/capice/main_capice.py'
2022-12-23T10:55:40,679   adding 'molgenis/capice/main_explain.py'
2022-12-23T10:55:40,680   adding 'molgenis/capice/main_predict.py'
2022-12-23T10:55:40,682   adding 'molgenis/capice/main_train.py'
2022-12-23T10:55:40,684   adding 'molgenis/capice/cli/__init__.py'
2022-12-23T10:55:40,685   adding 'molgenis/capice/cli/args_handler_explain.py'
2022-12-23T10:55:40,687   adding 'molgenis/capice/cli/args_handler_parent.py'
2022-12-23T10:55:40,688   adding 'molgenis/capice/cli/args_handler_predict.py'
2022-12-23T10:55:40,689   adding 'molgenis/capice/cli/args_handler_train.py'
2022-12-23T10:55:40,691   adding 'molgenis/capice/core/__init__.py'
2022-12-23T10:55:40,692   adding 'molgenis/capice/core/args_handler.py'
2022-12-23T10:55:40,694   adding 'molgenis/capice/core/capice_exporter.py'
2022-12-23T10:55:40,695   adding 'molgenis/capice/core/capice_manager.py'
2022-12-23T10:55:40,696   adding 'molgenis/capice/core/logger.py'
2022-12-23T10:55:40,698   adding 'molgenis/capice/utilities/__init__.py'
2022-12-23T10:55:40,700   adding 'molgenis/capice/utilities/categorical_processor.py'
2022-12-23T10:55:40,701   adding 'molgenis/capice/utilities/class_suggestor.py'
2022-12-23T10:55:40,703   adding 'molgenis/capice/utilities/column_utils.py'
2022-12-23T10:55:40,704   adding 'molgenis/capice/utilities/custom_logging_filter.py'
2022-12-23T10:55:40,705   adding 'molgenis/capice/utilities/dynamic_loader.py'
2022-12-23T10:55:40,706   adding 'molgenis/capice/utilities/enums.py'
2022-12-23T10:55:40,707   adding 'molgenis/capice/utilities/input_parser.py'
2022-12-23T10:55:40,709   adding 'molgenis/capice/utilities/input_processor.py'
2022-12-23T10:55:40,710   adding 'molgenis/capice/utilities/load_file_postprocessor.py'
2022-12-23T10:55:40,711   adding 'molgenis/capice/utilities/manual_vep_processor.py'
2022-12-23T10:55:40,712   adding 'molgenis/capice/utilities/predictor.py'
2022-12-23T10:55:40,714   adding 'molgenis/capice/validators/__init__.py'
2022-12-23T10:55:40,715   adding 'molgenis/capice/validators/input_validator.py'
2022-12-23T10:55:40,716   adding 'molgenis/capice/validators/model_validator.py'
2022-12-23T10:55:40,718   adding 'molgenis/capice/validators/post_file_parse_validator.py'
2022-12-23T10:55:40,719   adding 'molgenis/capice/validators/post_vep_processing_validator.py'
2022-12-23T10:55:40,720   adding 'molgenis/capice/validators/predict_validator.py'
2022-12-23T10:55:40,721   adding 'molgenis/capice/validators/property_type_validator.py'
2022-12-23T10:55:40,722   adding 'molgenis/capice/validators/version_validator.py'
2022-12-23T10:55:40,724   adding 'molgenis/capice/vep/__init__.py'
2022-12-23T10:55:40,725   adding 'molgenis/capice/vep/amino_acids.py'
2022-12-23T10:55:40,726   adding 'molgenis/capice/vep/cdna_position.py'
2022-12-23T10:55:40,727   adding 'molgenis/capice/vep/cds_position.py'
2022-12-23T10:55:40,729   adding 'molgenis/capice/vep/consequence.py'
2022-12-23T10:55:40,730   adding 'molgenis/capice/vep/length.py'
2022-12-23T10:55:40,731   adding 'molgenis/capice/vep/poly_phen.py'
2022-12-23T10:55:40,732   adding 'molgenis/capice/vep/protein_position.py'
2022-12-23T10:55:40,733   adding 'molgenis/capice/vep/seq.py'
2022-12-23T10:55:40,734   adding 'molgenis/capice/vep/sift.py'
2022-12-23T10:55:40,735   adding 'molgenis/capice/vep/template.py'
2022-12-23T10:55:40,737   adding 'molgenis/capice/vep/template_position.py'
2022-12-23T10:55:40,738   adding 'molgenis/capice/vep/template_sift_polyphen.py'
2022-12-23T10:55:40,739   adding 'molgenis/capice/vep/type.py'
2022-12-23T10:55:40,741   adding 'capice-5.0.0.dist-info/LICENSE'
2022-12-23T10:55:40,743   adding 'capice-5.0.0.dist-info/METADATA'
2022-12-23T10:55:40,744   adding 'capice-5.0.0.dist-info/WHEEL'
2022-12-23T10:55:40,745   adding 'capice-5.0.0.dist-info/entry_points.txt'
2022-12-23T10:55:40,746   adding 'capice-5.0.0.dist-info/top_level.txt'
2022-12-23T10:55:40,747   adding 'capice-5.0.0.dist-info/RECORD'
2022-12-23T10:55:40,750   removing build/bdist.linux-armv7l/wheel
2022-12-23T10:55:40,910   Building wheel for capice (setup.py): finished with status 'done'
2022-12-23T10:55:40,914   Created wheel for capice: filename=capice-5.0.0-py3-none-any.whl size=55749 sha256=5585dc67c452f748016bb4583e4eda883d6c53186d400221a0646c17ae49017f
2022-12-23T10:55:40,915   Stored in directory: /tmp/pip-ephem-wheel-cache-04ryl3e7/wheels/49/d5/cc/73cf321490718d42ff8465dce9b3fbed3a65f0e36fbe1f1bfd
2022-12-23T10:55:40,931 Successfully built capice
2022-12-23T10:55:40,937 Removed build tracker: '/tmp/pip-build-tracker-mm3fw4b1'