2022-12-27T10:49:07,330 Created temporary directory: /tmp/pip-ephem-wheel-cache-8eodxwey 2022-12-27T10:49:07,335 Created temporary directory: /tmp/pip-build-tracker-tc_ozzlp 2022-12-27T10:49:07,336 Initialized build tracking at /tmp/pip-build-tracker-tc_ozzlp 2022-12-27T10:49:07,336 Created build tracker: /tmp/pip-build-tracker-tc_ozzlp 2022-12-27T10:49:07,336 Entered build tracker: /tmp/pip-build-tracker-tc_ozzlp 2022-12-27T10:49:07,337 Created temporary directory: /tmp/pip-wheel-3gxn32po 2022-12-27T10:49:07,345 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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2022-12-27T10:49:07,890 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.8.0-py3-none-any.whl#sha256=918b8354fb66b65f80e96fd1f992b9a817ebbb726aacd6226d84375986fb4461 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:>=3.7) 2022-12-27T10:49:07,891 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.7.0-py3-none-any.whl#sha256=308f53d55dc7b763c246bcd8577248022c300597bda1388b013b7c7f051d72d9 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,891 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.6.0-py3-none-any.whl#sha256=50e9c93fd353baa2129bdf776a6c46b4426a182940202dc721a0493cf18bbfa1 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,892 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.5.0-py3-none-any.whl#sha256=b65b946cf89102fb4485b5e71188fc4f0c1cb9e416bb16097c158a8469cf1b6f (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,892 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.2-py3-none-any.whl#sha256=37a884b1bca128bb8d932f564a473d44a9691a6d53cdc78eba34eebe11aace56 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,893 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.1-py3-none-any.whl#sha256=767260e022723e03bf21f94c4f18f5ecd4a26a3085083a989a0e4b20e8b3e466 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,893 Skipping link: No binaries permitted for biobb-chemistry: https://www.piwheels.org/simple/biobb-chemistry/biobb_chemistry-3.0.0-py3-none-any.whl#sha256=7db835bd7488c6ec03a180caf8b8a656aa159529607303414c8d80eecae659e9 (from https://www.piwheels.org/simple/biobb-chemistry/) (requires-python:==3.7.*) 2022-12-27T10:49:07,894 Skipping link: not a file: https://www.piwheels.org/simple/biobb-chemistry/ 2022-12-27T10:49:07,894 Skipping link: not a file: https://pypi.org/simple/biobb-chemistry/ 2022-12-27T10:49:07,930 Given no hashes to check 1 links for project 'biobb-chemistry': discarding no candidates 2022-12-27T10:49:07,960 Collecting biobb-chemistry==3.9.0 2022-12-27T10:49:07,965 Created temporary directory: /tmp/pip-unpack-hmjbw7rr 2022-12-27T10:49:08,204 Downloading biobb_chemistry-3.9.0.tar.gz (20 kB) 2022-12-27T10:49:08,348 Added biobb-chemistry==3.9.0 from https://files.pythonhosted.org/packages/c7/42/4b842f9178688adb384cd631b3fe43856b18ee565e66f1af64d85c93e9eb/biobb_chemistry-3.9.0.tar.gz to build tracker '/tmp/pip-build-tracker-tc_ozzlp' 2022-12-27T10:49:08,352 Running setup.py (path:/tmp/pip-wheel-3gxn32po/biobb-chemistry_92c910c27bc4492f83709f753d6c6e73/setup.py) egg_info for package biobb-chemistry 2022-12-27T10:49:08,353 Created temporary directory: /tmp/pip-pip-egg-info-rtu7442g 2022-12-27T10:49:08,353 Preparing metadata (setup.py): started 2022-12-27T10:49:08,355 Running command python setup.py egg_info 2022-12-27T10:49:10,913 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-27T10:49:11,256 running egg_info 2022-12-27T10:49:11,262 creating /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info 2022-12-27T10:49:11,356 writing /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/PKG-INFO 2022-12-27T10:49:11,361 writing dependency_links to /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/dependency_links.txt 2022-12-27T10:49:11,365 writing entry points to /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/entry_points.txt 2022-12-27T10:49:11,368 writing requirements to /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/requires.txt 2022-12-27T10:49:11,370 writing top-level names to /tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/top_level.txt 2022-12-27T10:49:11,373 writing manifest file '/tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/SOURCES.txt' 2022-12-27T10:49:11,667 reading manifest file '/tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/SOURCES.txt' 2022-12-27T10:49:11,671 adding license file 'LICENSE' 2022-12-27T10:49:11,677 writing manifest file '/tmp/pip-pip-egg-info-rtu7442g/biobb_chemistry.egg-info/SOURCES.txt' 2022-12-27T10:49:11,880 Preparing metadata (setup.py): finished with status 'done' 2022-12-27T10:49:11,894 Source in /tmp/pip-wheel-3gxn32po/biobb-chemistry_92c910c27bc4492f83709f753d6c6e73 has version 3.9.0, which satisfies requirement biobb-chemistry==3.9.0 from https://files.pythonhosted.org/packages/c7/42/4b842f9178688adb384cd631b3fe43856b18ee565e66f1af64d85c93e9eb/biobb_chemistry-3.9.0.tar.gz 2022-12-27T10:49:11,896 Removed biobb-chemistry==3.9.0 from https://files.pythonhosted.org/packages/c7/42/4b842f9178688adb384cd631b3fe43856b18ee565e66f1af64d85c93e9eb/biobb_chemistry-3.9.0.tar.gz from build tracker '/tmp/pip-build-tracker-tc_ozzlp' 2022-12-27T10:49:11,912 Created temporary directory: /tmp/pip-unpack-4qdd7zja 2022-12-27T10:49:11,913 Building wheels for collected packages: biobb-chemistry 2022-12-27T10:49:11,923 Created temporary directory: /tmp/pip-wheel-f_6wxzdv 2022-12-27T10:49:11,924 Building wheel for biobb-chemistry (setup.py): started 2022-12-27T10:49:11,926 Destination directory: /tmp/pip-wheel-f_6wxzdv 2022-12-27T10:49:11,926 Running command python setup.py bdist_wheel 2022-12-27T10:49:14,434 Warning: 'classifiers' should be a list, got type 'tuple' 2022-12-27T10:49:14,836 running bdist_wheel 2022-12-27T10:49:15,706 running build 2022-12-27T10:49:15,707 running build_py 2022-12-27T10:49:15,807 creating build 2022-12-27T10:49:15,808 creating build/lib 2022-12-27T10:49:15,809 creating build/lib/biobb_chemistry 2022-12-27T10:49:15,811 copying biobb_chemistry/__init__.py -> build/lib/biobb_chemistry 2022-12-27T10:49:15,816 creating build/lib/biobb_chemistry/test 2022-12-27T10:49:15,818 copying biobb_chemistry/test/__init__.py -> build/lib/biobb_chemistry/test 2022-12-27T10:49:15,822 creating build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,824 copying biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,829 copying biobb_chemistry/acpype/acpype_params_gmx.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,833 copying biobb_chemistry/acpype/acpype_params_cns.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,837 copying biobb_chemistry/acpype/__init__.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,841 copying biobb_chemistry/acpype/common.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,846 copying biobb_chemistry/acpype/acpype_params_ac.py -> build/lib/biobb_chemistry/acpype 2022-12-27T10:49:15,851 creating build/lib/biobb_chemistry/ambertools 2022-12-27T10:49:15,853 copying biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/lib/biobb_chemistry/ambertools 2022-12-27T10:49:15,858 copying biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/lib/biobb_chemistry/ambertools 2022-12-27T10:49:15,862 copying biobb_chemistry/ambertools/__init__.py -> build/lib/biobb_chemistry/ambertools 2022-12-27T10:49:15,866 copying biobb_chemistry/ambertools/common.py -> build/lib/biobb_chemistry/ambertools 2022-12-27T10:49:15,871 creating build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,873 copying biobb_chemistry/babelm/babel_convert.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,878 copying biobb_chemistry/babelm/babel_add_hydrogens.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,882 copying biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,887 copying biobb_chemistry/babelm/babel_minimize.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,891 copying biobb_chemistry/babelm/__init__.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:15,895 copying biobb_chemistry/babelm/common.py -> build/lib/biobb_chemistry/babelm 2022-12-27T10:49:16,008 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2022-12-27T10:49:16,008 setuptools.SetuptoolsDeprecationWarning, 2022-12-27T10:49:16,103 installing to build/bdist.linux-armv7l/wheel 2022-12-27T10:49:16,104 running install 2022-12-27T10:49:16,165 running install_lib 2022-12-27T10:49:16,264 creating build/bdist.linux-armv7l 2022-12-27T10:49:16,264 creating build/bdist.linux-armv7l/wheel 2022-12-27T10:49:16,268 creating build/bdist.linux-armv7l/wheel/biobb_chemistry 2022-12-27T10:49:16,271 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/test 2022-12-27T10:49:16,273 copying build/lib/biobb_chemistry/test/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/test 2022-12-27T10:49:16,276 copying build/lib/biobb_chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry 2022-12-27T10:49:16,281 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,283 copying build/lib/biobb_chemistry/acpype/acpype_params_gmx_opls.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,287 copying build/lib/biobb_chemistry/acpype/acpype_params_gmx.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,291 copying build/lib/biobb_chemistry/acpype/acpype_params_cns.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,296 copying build/lib/biobb_chemistry/acpype/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,299 copying build/lib/biobb_chemistry/acpype/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,303 copying build/lib/biobb_chemistry/acpype/acpype_params_ac.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/acpype 2022-12-27T10:49:16,309 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2022-12-27T10:49:16,310 copying build/lib/biobb_chemistry/ambertools/reduce_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2022-12-27T10:49:16,315 copying build/lib/biobb_chemistry/ambertools/reduce_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2022-12-27T10:49:16,318 copying build/lib/biobb_chemistry/ambertools/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2022-12-27T10:49:16,322 copying build/lib/biobb_chemistry/ambertools/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/ambertools 2022-12-27T10:49:16,326 creating build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,327 copying build/lib/biobb_chemistry/babelm/babel_convert.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,332 copying build/lib/biobb_chemistry/babelm/babel_add_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,336 copying build/lib/biobb_chemistry/babelm/babel_remove_hydrogens.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,340 copying build/lib/biobb_chemistry/babelm/babel_minimize.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,344 copying build/lib/biobb_chemistry/babelm/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,347 copying build/lib/biobb_chemistry/babelm/common.py -> build/bdist.linux-armv7l/wheel/biobb_chemistry/babelm 2022-12-27T10:49:16,351 running install_egg_info 2022-12-27T10:49:16,619 running egg_info 2022-12-27T10:49:16,709 writing biobb_chemistry.egg-info/PKG-INFO 2022-12-27T10:49:16,720 writing dependency_links to biobb_chemistry.egg-info/dependency_links.txt 2022-12-27T10:49:16,724 writing entry points to biobb_chemistry.egg-info/entry_points.txt 2022-12-27T10:49:16,726 writing requirements to biobb_chemistry.egg-info/requires.txt 2022-12-27T10:49:16,728 writing top-level names to biobb_chemistry.egg-info/top_level.txt 2022-12-27T10:49:16,830 reading manifest file 'biobb_chemistry.egg-info/SOURCES.txt' 2022-12-27T10:49:16,834 adding license file 'LICENSE' 2022-12-27T10:49:16,841 writing manifest file 'biobb_chemistry.egg-info/SOURCES.txt' 2022-12-27T10:49:16,844 Copying biobb_chemistry.egg-info to build/bdist.linux-armv7l/wheel/biobb_chemistry-3.9.0-py3.7.egg-info 2022-12-27T10:49:16,866 running install_scripts 2022-12-27T10:49:17,009 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2022-12-27T10:49:17,018 creating build/bdist.linux-armv7l/wheel/biobb_chemistry-3.9.0.dist-info/WHEEL 2022-12-27T10:49:17,022 creating '/tmp/pip-wheel-f_6wxzdv/biobb_chemistry-3.9.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2022-12-27T10:49:17,027 adding 'biobb_chemistry/__init__.py' 2022-12-27T10:49:17,030 adding 'biobb_chemistry/acpype/__init__.py' 2022-12-27T10:49:17,034 adding 'biobb_chemistry/acpype/acpype_params_ac.py' 2022-12-27T10:49:17,038 adding 'biobb_chemistry/acpype/acpype_params_cns.py' 2022-12-27T10:49:17,042 adding 'biobb_chemistry/acpype/acpype_params_gmx.py' 2022-12-27T10:49:17,045 adding 'biobb_chemistry/acpype/acpype_params_gmx_opls.py' 2022-12-27T10:49:17,049 adding 'biobb_chemistry/acpype/common.py' 2022-12-27T10:49:17,052 adding 'biobb_chemistry/ambertools/__init__.py' 2022-12-27T10:49:17,054 adding 'biobb_chemistry/ambertools/common.py' 2022-12-27T10:49:17,058 adding 'biobb_chemistry/ambertools/reduce_add_hydrogens.py' 2022-12-27T10:49:17,061 adding 'biobb_chemistry/ambertools/reduce_remove_hydrogens.py' 2022-12-27T10:49:17,064 adding 'biobb_chemistry/babelm/__init__.py' 2022-12-27T10:49:17,068 adding 'biobb_chemistry/babelm/babel_add_hydrogens.py' 2022-12-27T10:49:17,072 adding 'biobb_chemistry/babelm/babel_convert.py' 2022-12-27T10:49:17,076 adding 'biobb_chemistry/babelm/babel_minimize.py' 2022-12-27T10:49:17,081 adding 'biobb_chemistry/babelm/babel_remove_hydrogens.py' 2022-12-27T10:49:17,084 adding 'biobb_chemistry/babelm/common.py' 2022-12-27T10:49:17,087 adding 'biobb_chemistry/test/__init__.py' 2022-12-27T10:49:17,094 adding 'biobb_chemistry-3.9.0.dist-info/LICENSE' 2022-12-27T10:49:17,096 adding 'biobb_chemistry-3.9.0.dist-info/METADATA' 2022-12-27T10:49:17,098 adding 'biobb_chemistry-3.9.0.dist-info/WHEEL' 2022-12-27T10:49:17,100 adding 'biobb_chemistry-3.9.0.dist-info/entry_points.txt' 2022-12-27T10:49:17,102 adding 'biobb_chemistry-3.9.0.dist-info/top_level.txt' 2022-12-27T10:49:17,104 adding 'biobb_chemistry-3.9.0.dist-info/RECORD' 2022-12-27T10:49:17,107 removing build/bdist.linux-armv7l/wheel 2022-12-27T10:49:17,369 Building wheel for biobb-chemistry (setup.py): finished with status 'done' 2022-12-27T10:49:17,378 Created wheel for biobb-chemistry: filename=biobb_chemistry-3.9.0-py3-none-any.whl size=43995 sha256=5e6024b35db52fb7367bddceb044a5a74570e9d5e23a316664f75dd46cb9ab3f 2022-12-27T10:49:17,380 Stored in directory: /tmp/pip-ephem-wheel-cache-quy0wujy/wheels/de/71/ec/474e69392ca36c5a367532d58eae8a4a2c7936cbc2acebf213 2022-12-27T10:49:17,409 Successfully built biobb-chemistry 2022-12-27T10:49:17,418 Removed build tracker: '/tmp/pip-build-tracker-tc_ozzlp'