2023-01-02T17:16:01,667 Created temporary directory: /tmp/pip-ephem-wheel-cache-0p1swu0c 2023-01-02T17:16:01,670 Created temporary directory: /tmp/pip-build-tracker-vmzjexge 2023-01-02T17:16:01,670 Initialized build tracking at /tmp/pip-build-tracker-vmzjexge 2023-01-02T17:16:01,671 Created build tracker: /tmp/pip-build-tracker-vmzjexge 2023-01-02T17:16:01,671 Entered build tracker: /tmp/pip-build-tracker-vmzjexge 2023-01-02T17:16:01,672 Created temporary directory: /tmp/pip-wheel-ovinsax2 2023-01-02T17:16:01,676 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-02T17:16:01,680 Created temporary directory: /tmp/pip-ephem-wheel-cache-wr7asqg2 2023-01-02T17:16:01,719 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-02T17:16:01,723 2 location(s) to search for versions of glycopeptidepy: 2023-01-02T17:16:01,723 * https://pypi.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,723 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,724 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,724 Getting page https://pypi.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,726 Found index url https://pypi.org/simple 2023-01-02T17:16:01,789 Fetched page https://pypi.org/simple/glycopeptidepy/ as application/vnd.pypi.simple.v1+json 2023-01-02T17:16:01,820 Skipping link: unsupported archive format: .egg: 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https://pypi.org/simple/glycopeptidepy/), version: 0.0.20 2023-01-02T17:16:01,860 Fetching project page and analyzing links: https://www.piwheels.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,861 Getting page https://www.piwheels.org/simple/glycopeptidepy/ 2023-01-02T17:16:01,862 Found index url https://www.piwheels.org/simple 2023-01-02T17:16:02,031 Fetched page https://www.piwheels.org/simple/glycopeptidepy/ as text/html 2023-01-02T17:16:02,051 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.20-cp37-cp37m-linux_armv7l.whl#sha256=ba5bf3ee5b4bdf1d248d8bdcd53f11d9fcadab22e5192e285081a74c031d7c51 (from https://www.piwheels.org/simple/glycopeptidepy/) 2023-01-02T17:16:02,052 Skipping link: No binaries permitted for glycopeptidepy: https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.20-cp37-cp37m-linux_armv6l.whl#sha256=ba5bf3ee5b4bdf1d248d8bdcd53f11d9fcadab22e5192e285081a74c031d7c51 (from 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https://pypi.org/simple/glycopeptidepy/ 2023-01-02T17:16:02,113 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-01-02T17:16:02,137 Collecting glycopeptidepy==0.0.20 2023-01-02T17:16:02,140 Created temporary directory: /tmp/pip-unpack-md8n6imz 2023-01-02T17:16:02,201 Downloading glycopeptidepy-0.0.20.tar.gz (1.4 MB) 2023-01-02T17:16:03,365 Added glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz to build tracker '/tmp/pip-build-tracker-vmzjexge' 2023-01-02T17:16:03,372 Created temporary directory: /tmp/pip-build-env-sxe5_c_4 2023-01-02T17:16:03,382 Installing build dependencies: started 2023-01-02T17:16:03,383 Running command pip subprocess to install build dependencies 2023-01-02T17:16:05,160 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-01-02T17:16:05,778 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-02T17:16:05,813 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-02T17:16:09,383 Collecting setuptools 2023-01-02T17:16:09,545 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2023-01-02T17:16:09,957 Collecting wheel 2023-01-02T17:16:09,986 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-01-02T17:16:12,213 Collecting Cython 2023-01-02T17:16:12,929 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-01-02T17:16:13,410 Collecting glypy 2023-01-02T17:16:13,476 Downloading https://www.piwheels.org/simple/glypy/glypy-1.0.7-cp39-cp39-linux_armv7l.whl (1.5 MB) 2023-01-02T17:16:13,786 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 5.0 MB/s eta 0:00:00 2023-01-02T17:16:14,319 Collecting hjson 2023-01-02T17:16:14,364 Downloading https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-01-02T17:16:14,390 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 54.0/54.0 kB 2.9 MB/s eta 0:00:00 2023-01-02T17:16:14,587 Collecting six 2023-01-02T17:16:14,628 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-01-02T17:16:17,608 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-01-02T17:16:18,002 Creating /tmp/pip-build-env-sxe5_c_4/overlay/bin 2023-01-02T17:16:18,006 changing mode of /tmp/pip-build-env-sxe5_c_4/overlay/bin/hjson to 755 2023-01-02T17:16:18,230 changing mode of /tmp/pip-build-env-sxe5_c_4/overlay/bin/wheel to 755 2023-01-02T17:16:25,827 changing mode of /tmp/pip-build-env-sxe5_c_4/overlay/bin/cygdb to 755 2023-01-02T17:16:25,831 changing mode of /tmp/pip-build-env-sxe5_c_4/overlay/bin/cython to 755 2023-01-02T17:16:25,835 changing mode of /tmp/pip-build-env-sxe5_c_4/overlay/bin/cythonize to 755 2023-01-02T17:16:27,759 Successfully installed Cython-0.29.32 glypy-1.0.7 hjson-3.1.0 setuptools-65.6.3 six-1.16.0 wheel-0.38.4 2023-01-02T17:16:27,779 [notice] A new release of pip available: 22.3 -> 22.3.1 2023-01-02T17:16:27,779 [notice] To update, run: python3 -m pip install --upgrade pip 2023-01-02T17:16:28,301 Installing build dependencies: finished with status 'done' 2023-01-02T17:16:28,318 Getting requirements to build wheel: started 2023-01-02T17:16:28,320 Running command Getting requirements to build wheel 2023-01-02T17:16:32,594 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/base.pxd 2023-01-02T17:16:32,595 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:34,200 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/fragment.pxd 2023-01-02T17:16:34,200 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:37,965 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-01-02T17:16:37,966 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:39,544 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-01-02T17:16:39,544 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:43,354 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-01-02T17:16:43,355 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:50,377 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/glycan.pxd 2023-01-02T17:16:50,378 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:52,030 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/modification/rule.pxd 2023-01-02T17:16:52,031 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:52,879 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-01-02T17:16:52,880 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:55,722 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/algorithm.pyx 2023-01-02T17:16:55,722 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:57,015 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/collectiontools.pxd 2023-01-02T17:16:57,015 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:16:58,612 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/count_table.pxd 2023-01-02T17:16:58,612 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:17:01,544 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/parser.pxd 2023-01-02T17:17:01,545 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:17:03,324 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-01-02T17:17:03,692 /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52/src/glycopeptidepy/_c/structure/modification/source.pxd 2023-01-02T17:17:03,693 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-02T17:17:04,377 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-01-02T17:17:04,377 Compiling src/glycopeptidepy/_c/count_table.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-01-02T17:17:04,378 Compiling src/glycopeptidepy/_c/parser.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-01-02T17:17:04,379 Compiling src/glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,380 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,380 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-01-02T17:17:04,381 Compiling src/glycopeptidepy/_c/algorithm.pyx because it depends on /tmp/pip-build-env-sxe5_c_4/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-01-02T17:17:04,382 [ 1/13] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2023-01-02T17:17:04,382 [ 2/13] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2023-01-02T17:17:04,382 [ 3/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-01-02T17:17:04,382 [ 4/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-01-02T17:17:04,382 [ 5/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-01-02T17:17:04,382 [ 6/13] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2023-01-02T17:17:04,382 [ 7/13] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2023-01-02T17:17:04,383 [ 8/13] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2023-01-02T17:17:04,383 [ 9/13] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2023-01-02T17:17:04,383 [10/13] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2023-01-02T17:17:04,383 [11/13] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2023-01-02T17:17:04,383 [12/13] Cythonizing src/glycopeptidepy/_c/parser.pyx 2023-01-02T17:17:04,383 [13/13] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2023-01-02T17:17:04,552 running egg_info 2023-01-02T17:17:04,562 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-01-02T17:17:04,565 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-01-02T17:17:04,572 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-01-02T17:17:04,574 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-01-02T17:17:04,658 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:04,665 reading manifest template 'MANIFEST.in' 2023-01-02T17:17:05,149 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:06,229 Getting requirements to build wheel: finished with status 'done' 2023-01-02T17:17:06,249 Created temporary directory: /tmp/pip-modern-metadata-2gra8o0s 2023-01-02T17:17:06,255 Preparing metadata (pyproject.toml): started 2023-01-02T17:17:06,257 Running command Preparing metadata (pyproject.toml) 2023-01-02T17:17:09,274 running dist_info 2023-01-02T17:17:09,316 creating /tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info 2023-01-02T17:17:09,327 writing /tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/PKG-INFO 2023-01-02T17:17:09,333 writing dependency_links to /tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/dependency_links.txt 2023-01-02T17:17:09,338 writing requirements to /tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/requires.txt 2023-01-02T17:17:09,341 writing top-level names to /tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/top_level.txt 2023-01-02T17:17:09,345 writing manifest file '/tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:09,421 reading manifest file '/tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:09,426 reading manifest template 'MANIFEST.in' 2023-01-02T17:17:09,798 writing manifest file '/tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:09,801 creating '/tmp/pip-modern-metadata-2gra8o0s/glycopeptidepy-0.0.20.dist-info' 2023-01-02T17:17:10,257 Preparing metadata (pyproject.toml): finished with status 'done' 2023-01-02T17:17:10,268 Source in /tmp/pip-wheel-ovinsax2/glycopeptidepy_15363034cb2644439a5c4941ed2ccd52 has version 0.0.20, which satisfies requirement glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz 2023-01-02T17:17:10,269 Removed glycopeptidepy==0.0.20 from https://files.pythonhosted.org/packages/34/d1/f331cbfa9258f696e4bd0d0f39317e31a7ac179da6e39848e7fc1f0b3863/glycopeptidepy-0.0.20.tar.gz from build tracker '/tmp/pip-build-tracker-vmzjexge' 2023-01-02T17:17:10,279 Created temporary directory: /tmp/pip-unpack-2lkh185q 2023-01-02T17:17:10,280 Building wheels for collected packages: glycopeptidepy 2023-01-02T17:17:10,286 Created temporary directory: /tmp/pip-wheel-s8t2_ekm 2023-01-02T17:17:10,287 Destination directory: /tmp/pip-wheel-s8t2_ekm 2023-01-02T17:17:10,290 Building wheel for glycopeptidepy (pyproject.toml): started 2023-01-02T17:17:10,292 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-01-02T17:17:13,183 running bdist_wheel 2023-01-02T17:17:13,217 running build 2023-01-02T17:17:13,217 running build_py 2023-01-02T17:17:13,232 creating build 2023-01-02T17:17:13,234 creating build/lib.linux-armv7l-cpython-39 2023-01-02T17:17:13,236 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-01-02T17:17:13,239 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-01-02T17:17:13,254 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-01-02T17:17:13,259 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-01-02T17:17:13,263 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-01-02T17:17:13,267 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:13,268 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:13,271 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:13,274 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,276 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,279 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,282 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,286 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,290 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,293 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-01-02T17:17:13,297 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,299 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,303 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,306 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,310 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,313 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,317 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,320 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,323 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,328 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,333 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-01-02T17:17:13,338 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-01-02T17:17:13,339 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-01-02T17:17:13,343 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-01-02T17:17:13,346 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,348 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,351 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,355 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,366 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,369 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,371 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,375 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-01-02T17:17:13,380 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:13,382 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:13,385 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:13,386 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:13,390 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:13,392 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:13,396 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:17:13,398 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:17:13,402 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:17:13,405 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:17:13,411 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:17:13,415 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,417 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,421 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,425 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,428 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,434 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,438 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,441 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,445 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-01-02T17:17:13,450 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,451 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,456 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,461 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,464 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,469 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-01-02T17:17:13,476 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:13,477 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:13,482 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:13,485 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:13,489 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-01-02T17:17:13,490 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-01-02T17:17:13,494 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-01-02T17:17:13,497 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-01-02T17:17:13,501 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-01-02T17:17:13,504 running egg_info 2023-01-02T17:17:13,545 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-01-02T17:17:13,551 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-01-02T17:17:13,553 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-01-02T17:17:13,555 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-01-02T17:17:13,587 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:13,593 reading manifest template 'MANIFEST.in' 2023-01-02T17:17:14,012 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-01-02T17:17:14,024 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,047 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,055 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,069 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,072 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,076 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,080 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,083 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,106 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,110 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,115 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,130 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,134 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-01-02T17:17:14,140 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,162 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,166 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,170 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,180 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,184 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,188 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,228 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,231 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,236 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,260 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,265 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,269 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,292 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,295 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-01-02T17:17:14,299 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,313 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,317 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,321 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,370 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,374 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,379 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,435 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,438 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:17:14,443 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,459 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,462 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,465 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,483 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,486 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,492 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,505 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,509 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,513 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-01-02T17:17:14,517 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:14,520 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-01-02T17:17:14,577 running build_ext 2023-01-02T17:17:14,584 building 'glycopeptidepy._c.collectiontools' extension 2023-01-02T17:17:14,585 creating build/temp.linux-armv7l-cpython-39 2023-01-02T17:17:14,586 creating build/temp.linux-armv7l-cpython-39/src 2023-01-02T17:17:14,587 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy 2023-01-02T17:17:14,588 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c 2023-01-02T17:17:14,590 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o 2023-01-02T17:17:20,828 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:17:21,046 building 'glycopeptidepy._c.count_table' extension 2023-01-02T17:17:21,047 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o 2023-01-02T17:17:22,420 src/glycopeptidepy/_c/count_table.c:2444:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-01-02T17:17:22,420 2444 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-01-02T17:17:22,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-01-02T17:17:22,421 src/glycopeptidepy/_c/count_table.c:2186:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-01-02T17:17:22,422 2186 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-01-02T17:17:22,422 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-01-02T17:17:22,422 src/glycopeptidepy/_c/count_table.c:1956:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-01-02T17:17:22,423 1956 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-01-02T17:17:22,423 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-01-02T17:17:34,695 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:17:34,934 building 'glycopeptidepy._c.parser' extension 2023-01-02T17:17:34,935 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o 2023-01-02T17:17:35,460 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-01-02T17:17:35,460 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-01-02T17:17:35,460 38 | #define PyInt_Check PyLong_Check 2023-01-02T17:17:35,461 | 2023-01-02T17:17:35,463 src/glycopeptidepy/_c/parser.c:670: note: this is the location of the previous definition 2023-01-02T17:17:35,464 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-01-02T17:17:35,464 | 2023-01-02T17:17:35,465 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-01-02T17:17:35,465 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-01-02T17:17:35,466 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-01-02T17:17:35,466 | 2023-01-02T17:17:35,467 src/glycopeptidepy/_c/parser.c:671: note: this is the location of the previous definition 2023-01-02T17:17:35,467 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-01-02T17:17:35,468 | 2023-01-02T17:17:35,483 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-01-02T17:17:35,484 src/glycopeptidepy/_c/parser.c:2004:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:17:35,484 2004 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-01-02T17:17:35,484 | ^ 2023-01-02T17:17:35,534 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2023-01-02T17:17:35,536 src/glycopeptidepy/_c/parser.c:4494:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-01-02T17:17:35,537 4494 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2023-01-02T17:17:35,537 | ^~ 2023-01-02T17:17:35,547 src/glycopeptidepy/_c/parser.c:4921:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-01-02T17:17:35,548 4921 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2023-01-02T17:17:35,548 | ^~ 2023-01-02T17:17:35,554 src/glycopeptidepy/_c/parser.c:5127:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-01-02T17:17:35,555 5127 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2023-01-02T17:17:35,555 | ^~ 2023-01-02T17:17:35,575 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-01-02T17:17:35,579 src/glycopeptidepy/_c/parser.c:5990:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:17:35,579 5990 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-01-02T17:17:35,579 | ^ 2023-01-02T17:17:43,110 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:17:43,282 building 'glycopeptidepy._c.structure.base' extension 2023-01-02T17:17:43,284 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure 2023-01-02T17:17:43,285 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o 2023-01-02T17:18:00,198 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:18:00,449 building 'glycopeptidepy._c.structure.fragment' extension 2023-01-02T17:18:00,450 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o 2023-01-02T17:18:00,931 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-01-02T17:18:00,932 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-01-02T17:18:00,933 38 | #define PyInt_Check PyLong_Check 2023-01-02T17:18:00,933 | 2023-01-02T17:18:00,942 src/glycopeptidepy/_c/structure/fragment.c:670: note: this is the location of the previous definition 2023-01-02T17:18:00,943 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-01-02T17:18:00,943 | 2023-01-02T17:18:00,943 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-01-02T17:18:00,943 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-01-02T17:18:00,944 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-01-02T17:18:00,944 | 2023-01-02T17:18:00,944 src/glycopeptidepy/_c/structure/fragment.c:671: note: this is the location of the previous definition 2023-01-02T17:18:00,944 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-01-02T17:18:00,944 | 2023-01-02T17:18:00,978 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-01-02T17:18:00,980 src/glycopeptidepy/_c/structure/fragment.c:3243:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:00,980 3243 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-01-02T17:18:00,980 | ^ 2023-01-02T17:18:00,983 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-01-02T17:18:00,984 src/glycopeptidepy/_c/structure/fragment.c:3472:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:00,985 3472 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-01-02T17:18:00,985 | ^ 2023-01-02T17:18:01,135 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-01-02T17:18:01,140 src/glycopeptidepy/_c/structure/fragment.c:10375:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:01,140 10375 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-01-02T17:18:01,141 | ^ 2023-01-02T17:18:01,152 src/glycopeptidepy/_c/structure/fragment.c:10690:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:01,152 10690 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-01-02T17:18:01,153 | ^ 2023-01-02T17:18:01,159 src/glycopeptidepy/_c/structure/fragment.c:10864:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:01,159 10864 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-01-02T17:18:01,159 | ^ 2023-01-02T17:18:01,165 src/glycopeptidepy/_c/structure/fragment.c:11043:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-01-02T17:18:01,166 11043 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-01-02T17:18:01,166 | ^ 2023-01-02T17:18:29,517 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:18:29,804 building 'glycopeptidepy._c.structure.constants' extension 2023-01-02T17:18:29,806 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o 2023-01-02T17:18:34,163 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:18:34,321 building 'glycopeptidepy._c.structure.glycan' extension 2023-01-02T17:18:34,322 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o 2023-01-02T17:18:34,811 src/glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2023-01-02T17:18:34,813 src/glycopeptidepy/_c/structure/glycan.c:2608:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-01-02T17:18:34,813 2608 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||(PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2023-01-02T17:18:34,813 | ^~ 2023-01-02T17:18:51,438 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:18:51,670 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-01-02T17:18:51,672 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o 2023-01-02T17:18:52,385 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-01-02T17:18:52,391 src/glycopeptidepy/_c/structure/sequence_methods.c:11799:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-01-02T17:18:52,391 11799 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2023-01-02T17:18:52,391 | ^~ 2023-01-02T17:19:10,465 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:19:10,749 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-01-02T17:19:10,751 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification 2023-01-02T17:19:10,752 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o 2023-01-02T17:19:22,939 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:19:23,148 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-01-02T17:19:23,150 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o 2023-01-02T17:19:29,674 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:19:29,848 building 'glycopeptidepy._c.structure.modification.source' extension 2023-01-02T17:19:29,849 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o 2023-01-02T17:19:36,683 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:19:36,879 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-01-02T17:19:36,881 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:19:36,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-01-02T17:19:42,658 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:19:42,828 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-01-02T17:19:42,829 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-01-02T17:20:21,235 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:20:21,521 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-01-02T17:20:21,522 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-01-02T17:20:22,250 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-01-02T17:20:22,257 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9538:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-01-02T17:20:22,258 9538 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-01-02T17:20:22,259 | ^ 2023-01-02T17:20:22,267 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9554:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-01-02T17:20:22,268 9554 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-01-02T17:20:22,270 | ^ 2023-01-02T17:20:22,412 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-01-02T17:20:22,421 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13646:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-01-02T17:20:22,422 13646 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-01-02T17:20:22,422 | ^ 2023-01-02T17:20:22,442 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-01-02T17:20:22,450 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14270:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-01-02T17:20:22,451 14270 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-01-02T17:20:22,451 | ^ 2023-01-02T17:20:22,468 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14028:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-01-02T17:20:22,469 14028 | int __pyx_t_15; 2023-01-02T17:20:22,469 | ^~~~~~~~~~ 2023-01-02T17:20:22,525 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-01-02T17:20:22,534 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16077:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-01-02T17:20:22,535 16077 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-01-02T17:20:22,535 | ^ 2023-01-02T17:20:22,551 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15835:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-01-02T17:20:22,551 15835 | int __pyx_t_15; 2023-01-02T17:20:22,551 | ^~~~~~~~~~ 2023-01-02T17:20:22,592 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-01-02T17:20:22,602 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17329:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-01-02T17:20:22,603 17329 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-01-02T17:20:22,603 | ^ 2023-01-02T17:20:22,614 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17387:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-01-02T17:20:22,615 17387 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-01-02T17:20:22,616 | ^ 2023-01-02T17:20:22,627 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17445:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-01-02T17:20:22,628 17445 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-01-02T17:20:22,628 | ^ 2023-01-02T17:20:50,940 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:20:51,179 building 'glycopeptidepy._c.algorithm' extension 2023-01-02T17:20:51,180 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o 2023-01-02T17:21:04,085 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2023-01-02T17:21:04,368 installing to build/bdist.linux-armv7l/wheel 2023-01-02T17:21:04,370 running install 2023-01-02T17:21:04,408 running install_lib 2023-01-02T17:21:04,449 creating build/bdist.linux-armv7l 2023-01-02T17:21:04,450 creating build/bdist.linux-armv7l/wheel 2023-01-02T17:21:04,454 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-01-02T17:21:04,458 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,460 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,465 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,469 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,474 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,493 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,498 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,502 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,507 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,522 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,526 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,530 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,536 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,539 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,558 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,584 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,614 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:04,632 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:04,633 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:04,646 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,648 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,660 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,666 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,673 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,676 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,690 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,693 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,696 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,699 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,742 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,792 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,838 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,842 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-01-02T17:21:04,877 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:04,882 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,884 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,888 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,891 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,894 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,906 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,923 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,926 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,930 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,933 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,945 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,948 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,967 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,970 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,981 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-01-02T17:21:04,991 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,022 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,025 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,049 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,053 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,057 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,078 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,104 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,118 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,123 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,135 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,138 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,140 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,143 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,172 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,196 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,200 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,227 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,232 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-01-02T17:21:05,271 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:05,283 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:05,307 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-01-02T17:21:05,310 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-01-02T17:21:05,316 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,318 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,322 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,326 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,329 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,333 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,337 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-01-02T17:21:05,341 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-01-02T17:21:05,344 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-01-02T17:21:05,348 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-01-02T17:21:05,353 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,355 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:21:05,357 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:21:05,362 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:21:05,365 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:21:05,370 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-01-02T17:21:05,374 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,381 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,383 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,387 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,391 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,395 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,400 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,404 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,407 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,412 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,414 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,417 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,465 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,471 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,477 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-01-02T17:21:05,482 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-01-02T17:21:05,486 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,490 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,498 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,506 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,511 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,512 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,517 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,523 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,528 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,533 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-01-02T17:21:05,539 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,542 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,545 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,548 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,552 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-01-02T17:21:05,556 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-01-02T17:21:05,558 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-01-02T17:21:05,562 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-01-02T17:21:05,565 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,567 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,571 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,576 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,580 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-01-02T17:21:05,582 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-01-02T17:21:05,586 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-01-02T17:21:05,589 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-01-02T17:21:05,593 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-01-02T17:21:05,596 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,599 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,602 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,606 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-01-02T17:21:05,610 running install_egg_info 2023-01-02T17:21:05,632 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.20-py3.9.egg-info 2023-01-02T17:21:05,663 running install_scripts 2023-01-02T17:21:05,817 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.20.dist-info/WHEEL 2023-01-02T17:21:05,822 creating '/tmp/pip-wheel-s8t2_ekm/.tmp-wl921mz_/glycopeptidepy-0.0.20-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-02T17:21:05,827 adding 'glycopeptidepy/__init__.py' 2023-01-02T17:21:05,830 adding 'glycopeptidepy/algorithm.py' 2023-01-02T17:21:05,834 adding 'glycopeptidepy/enzyme.py' 2023-01-02T17:21:05,836 adding 'glycopeptidepy/version.py' 2023-01-02T17:21:05,839 adding 'glycopeptidepy/_c/__init__.py' 2023-01-02T17:21:05,890 adding 'glycopeptidepy/_c/algorithm.c' 2023-01-02T17:21:06,055 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,062 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-01-02T17:21:06,094 adding 'glycopeptidepy/_c/collectiontools.c' 2023-01-02T17:21:06,167 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,171 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-01-02T17:21:06,174 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-01-02T17:21:06,177 adding 'glycopeptidepy/_c/compat.h' 2023-01-02T17:21:06,180 adding 'glycopeptidepy/_c/compat.pxd' 2023-01-02T17:21:06,243 adding 'glycopeptidepy/_c/count_table.c' 2023-01-02T17:21:06,403 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,410 adding 'glycopeptidepy/_c/count_table.pxd' 2023-01-02T17:21:06,415 adding 'glycopeptidepy/_c/count_table.pyx' 2023-01-02T17:21:06,418 adding 'glycopeptidepy/_c/cythonize.py' 2023-01-02T17:21:06,457 adding 'glycopeptidepy/_c/parser.c' 2023-01-02T17:21:06,548 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,552 adding 'glycopeptidepy/_c/parser.pxd' 2023-01-02T17:21:06,556 adding 'glycopeptidepy/_c/parser.pyx' 2023-01-02T17:21:06,560 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-01-02T17:21:06,630 adding 'glycopeptidepy/_c/structure/base.c' 2023-01-02T17:21:06,864 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,873 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-01-02T17:21:06,878 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-01-02T17:21:06,905 adding 'glycopeptidepy/_c/structure/constants.c' 2023-01-02T17:21:06,973 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:06,977 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-01-02T17:21:06,979 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-01-02T17:21:07,085 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-01-02T17:21:07,432 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:07,444 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-01-02T17:21:07,449 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-01-02T17:21:07,519 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-01-02T17:21:07,747 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:07,755 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-01-02T17:21:07,758 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-01-02T17:21:07,833 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-01-02T17:21:08,059 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:08,068 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-01-02T17:21:08,073 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-01-02T17:21:08,077 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-01-02T17:21:08,113 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-01-02T17:21:08,190 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:08,195 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-01-02T17:21:08,198 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-01-02T17:21:08,314 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-01-02T17:21:08,646 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:08,658 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-01-02T17:21:08,666 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-01-02T17:21:08,822 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-01-02T17:21:09,287 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:09,302 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-01-02T17:21:09,306 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-01-02T17:21:09,310 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-01-02T17:21:09,342 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-01-02T17:21:09,420 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:09,425 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-01-02T17:21:09,428 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-01-02T17:21:09,479 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-01-02T17:21:09,629 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:09,640 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-01-02T17:21:09,646 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-01-02T17:21:09,678 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-01-02T17:21:09,756 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2023-01-02T17:21:09,760 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-01-02T17:21:09,763 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-01-02T17:21:09,765 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-01-02T17:21:09,769 adding 'glycopeptidepy/io/__init__.py' 2023-01-02T17:21:09,772 adding 'glycopeptidepy/io/annotation.py' 2023-01-02T17:21:09,778 adding 'glycopeptidepy/io/fasta.py' 2023-01-02T17:21:09,782 adding 'glycopeptidepy/io/mzid.py' 2023-01-02T17:21:09,786 adding 'glycopeptidepy/io/nextprot.py' 2023-01-02T17:21:09,791 adding 'glycopeptidepy/io/uniprot.py' 2023-01-02T17:21:09,795 adding 'glycopeptidepy/io/utils.py' 2023-01-02T17:21:09,800 adding 'glycopeptidepy/io/cv/__init__.py' 2023-01-02T17:21:09,804 adding 'glycopeptidepy/io/cv/peff.py' 2023-01-02T17:21:09,808 adding 'glycopeptidepy/io/cv/term.py' 2023-01-02T17:21:09,812 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-01-02T17:21:09,818 adding 'glycopeptidepy/structure/__init__.py' 2023-01-02T17:21:09,825 adding 'glycopeptidepy/structure/base.py' 2023-01-02T17:21:09,832 adding 'glycopeptidepy/structure/composition.py' 2023-01-02T17:21:09,834 adding 'glycopeptidepy/structure/constants.py' 2023-01-02T17:21:09,842 adding 'glycopeptidepy/structure/fragment.py' 2023-01-02T17:21:09,848 adding 'glycopeptidepy/structure/glycan.py' 2023-01-02T17:21:09,854 adding 'glycopeptidepy/structure/parser.py' 2023-01-02T17:21:09,861 adding 'glycopeptidepy/structure/residue.py' 2023-01-02T17:21:09,866 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-01-02T17:21:09,869 adding 'glycopeptidepy/structure/terminal_group.py' 2023-01-02T17:21:09,872 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-01-02T17:21:09,876 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-01-02T17:21:09,881 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-01-02T17:21:09,886 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-01-02T17:21:09,890 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-01-02T17:21:09,892 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-01-02T17:21:09,897 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-01-02T17:21:09,900 adding 'glycopeptidepy/structure/modification/modification.py' 2023-01-02T17:21:09,906 adding 'glycopeptidepy/structure/modification/rule.py' 2023-01-02T17:21:09,910 adding 'glycopeptidepy/structure/modification/source.py' 2023-01-02T17:21:09,914 adding 'glycopeptidepy/structure/modification/target.py' 2023-01-02T17:21:09,917 adding 'glycopeptidepy/structure/modification/utils.py' 2023-01-02T17:21:09,921 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-01-02T17:21:09,924 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-01-02T17:21:09,927 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-01-02T17:21:10,008 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-01-02T17:21:10,025 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-01-02T17:21:10,030 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-01-02T17:21:10,035 adding 'glycopeptidepy/structure/sequence/base.py' 2023-01-02T17:21:10,039 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-01-02T17:21:10,044 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-01-02T17:21:10,048 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-01-02T17:21:10,052 adding 'glycopeptidepy/test/__init__.py' 2023-01-02T17:21:10,057 adding 'glycopeptidepy/test/sequence_test_suite.py' 2023-01-02T17:21:10,063 adding 'glycopeptidepy/utils/__init__.py' 2023-01-02T17:21:10,066 adding 'glycopeptidepy/utils/collectiontools.py' 2023-01-02T17:21:10,070 adding 'glycopeptidepy/utils/intervals.py' 2023-01-02T17:21:10,073 adding 'glycopeptidepy/utils/iterators.py' 2023-01-02T17:21:10,076 adding 'glycopeptidepy/utils/memoize.py' 2023-01-02T17:21:10,080 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-01-02T17:21:10,084 adding 'glycopeptidepy-0.0.20.dist-info/METADATA' 2023-01-02T17:21:10,087 adding 'glycopeptidepy-0.0.20.dist-info/WHEEL' 2023-01-02T17:21:10,089 adding 'glycopeptidepy-0.0.20.dist-info/top_level.txt' 2023-01-02T17:21:10,093 adding 'glycopeptidepy-0.0.20.dist-info/RECORD' 2023-01-02T17:21:10,191 removing build/bdist.linux-armv7l/wheel 2023-01-02T17:21:10,629 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-01-02T17:21:10,826 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.20-cp39-cp39-linux_armv7l.whl size=5391327 sha256=f94a32bc2266eb80b49b222fa1503cd38ff01332967849e1488b701523aa9e7c 2023-01-02T17:21:10,827 Stored in directory: /tmp/pip-ephem-wheel-cache-wr7asqg2/wheels/09/3b/e2/e1e963f156c9c442047cec40c2a9cfb8c96e113c77534e9be6 2023-01-02T17:21:10,852 Successfully built glycopeptidepy 2023-01-02T17:21:11,115 Removed build tracker: '/tmp/pip-build-tracker-vmzjexge'