2023-01-03T19:19:27,128 Created temporary directory: /tmp/pip-ephem-wheel-cache-uf3_itki 2023-01-03T19:19:27,131 Created temporary directory: /tmp/pip-build-tracker-4mv5c04j 2023-01-03T19:19:27,131 Initialized build tracking at /tmp/pip-build-tracker-4mv5c04j 2023-01-03T19:19:27,131 Created build tracker: /tmp/pip-build-tracker-4mv5c04j 2023-01-03T19:19:27,131 Entered build tracker: /tmp/pip-build-tracker-4mv5c04j 2023-01-03T19:19:27,132 Created temporary directory: /tmp/pip-wheel-zwl8g7mt 2023-01-03T19:19:27,135 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-03T19:19:27,137 Created temporary directory: /tmp/pip-ephem-wheel-cache-378st03p 2023-01-03T19:19:27,164 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-03T19:19:27,167 2 location(s) to search for versions of biom-format: 2023-01-03T19:19:27,167 * https://pypi.org/simple/biom-format/ 2023-01-03T19:19:27,167 * https://www.piwheels.org/simple/biom-format/ 2023-01-03T19:19:27,168 Fetching project page and analyzing links: https://pypi.org/simple/biom-format/ 2023-01-03T19:19:27,168 Getting page https://pypi.org/simple/biom-format/ 2023-01-03T19:19:27,170 Found index url https://pypi.org/simple 2023-01-03T19:19:27,221 Fetched page https://pypi.org/simple/biom-format/ as application/vnd.pypi.simple.v1+json 2023-01-03T19:19:27,225 Found link https://files.pythonhosted.org/packages/e8/a0/0b4947cd716f8923410be46d0473442e906e80fd605d1f900667224878a9/biom-format-1.2.0-dev.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.2.0-dev 2023-01-03T19:19:27,226 Found link https://files.pythonhosted.org/packages/5d/a6/50855b83db9932d78ff10721d90f79725729040db8117ce2c5a1e50c3a75/biom-format-1.3.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.0 2023-01-03T19:19:27,226 Found link https://files.pythonhosted.org/packages/98/3b/4e80a9a5c4a3c6764aa8c0c994973e7df71eee02fc6b8cc6e1d06a64ab7e/biom-format-1.3.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 1.3.1 2023-01-03T19:19:27,226 Found link https://files.pythonhosted.org/packages/ab/62/b44f747c549c2cb3408462905461ae8d0975163c927b4ac4452321368815/biom-format-2.0.0.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.0 2023-01-03T19:19:27,227 Found link https://files.pythonhosted.org/packages/26/14/46ce3a0c94b4e5f03473b029be7df19341c525c92d310443ca1bd935c4c1/biom-format-2.0.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.0.1 2023-01-03T19:19:27,227 Found link https://files.pythonhosted.org/packages/bc/8e/c937b6997062dfc70cd6fc6f53b70703dcec400e39af2d43542349f7ace6/biom-format-2.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1 2023-01-03T19:19:27,227 Found link https://files.pythonhosted.org/packages/40/45/a7a64146c75f00cf9889753d39a0371adf2982ee3f1eb31c28efbb5a3529/biom-format-2.1.1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.1 2023-01-03T19:19:27,227 Found link https://files.pythonhosted.org/packages/d9/de/65d8089e4aab975658f80c4975015fb5c761fe4c37868cc317733f33d0cd/biom-format-2.1.2.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.2 2023-01-03T19:19:27,228 Found link https://files.pythonhosted.org/packages/9d/ed/1ff2ee2d16aa3edd66e8f07f11321eb9b9cd478307d87674c633ba9b081a/biom-format-2.1.3.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.3 2023-01-03T19:19:27,228 Found link https://files.pythonhosted.org/packages/2e/8e/f8575e51764697c485f7e81dfc31ff72d8b2c4b50e88c23094be65814451/biom-format-2.1.4.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.4 2023-01-03T19:19:27,228 Found link https://files.pythonhosted.org/packages/e8/74/9b7e50c29ba548cd53eb97fb9cc1f05a2cf53aa179a64f36e93282b84f79/biom-format-2.1.5.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.5 2023-01-03T19:19:27,229 Found link https://files.pythonhosted.org/packages/46/a6/fccc2f5db587d7d896b52054aa5a9f0f7fd8fb6ad23ab9a02934d4cb1739/biom-format-2.1.6.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.6 2023-01-03T19:19:27,229 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/c2/10/ed278d6263ad222b5327f127f07afaadff7dc7ae8482592b9c05500e976d/biom_format-2.1.6-cp27-cp27m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2023-01-03T19:19:27,229 Found link https://files.pythonhosted.org/packages/25/92/ca4688a006b784bcc1f118c4a53e9aadc78d78abf8ff58ee11d29ac950a4/biom-format-2.1.7.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.7 2023-01-03T19:19:27,230 Skipping link: No binaries permitted for biom-format: https://files.pythonhosted.org/packages/d1/84/0521b9203bb525c2d6a06905be950f29ca98e60a12dca71dfd18bffe7d92/biom_format-2.1.7-cp36-cp36m-macosx_10_7_x86_64.whl (from https://pypi.org/simple/biom-format/) 2023-01-03T19:19:27,230 Found link https://files.pythonhosted.org/packages/c1/c6/3b4284680b390a6c0a39de2fddddfe19a28d1bdceb5951713c483c147f44/biom-format-2.1.8-1.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.8-1 2023-01-03T19:19:27,230 Found link https://files.pythonhosted.org/packages/4b/50/65e535736597ce91e82a8e3e83cf1e88735368b58f99585f600b854f0bc9/biom-format-2.1.9.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.9 2023-01-03T19:19:27,230 Found link https://files.pythonhosted.org/packages/2b/8f/ef865d43a06dd3d1b09808fbd129074e64127fa8db0b93b5e0cf1d1a50de/biom-format-2.1.10.tar.gz (from https://pypi.org/simple/biom-format/), version: 2.1.10 2023-01-03T19:19:27,231 Found link https://files.pythonhosted.org/packages/fc/3f/7eb762b52f490b810b1686fd41cd6f3f7f33c0dab29c4273c96e9a1641a2/biom-format-2.1.12.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.12 2023-01-03T19:19:27,232 Found link https://files.pythonhosted.org/packages/90/57/0a326e17005b25e56f6e25b8b1e3eae299b7f6d53af06b11c4830d631612/biom-format-2.1.13.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.13 2023-01-03T19:19:27,232 Found link https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz (from https://pypi.org/simple/biom-format/) (requires-python:>=3.6), version: 2.1.14 2023-01-03T19:19:27,233 Fetching project page and analyzing links: https://www.piwheels.org/simple/biom-format/ 2023-01-03T19:19:27,233 Getting page https://www.piwheels.org/simple/biom-format/ 2023-01-03T19:19:27,234 Found index url https://www.piwheels.org/simple 2023-01-03T19:19:27,403 Fetched page https://www.piwheels.org/simple/biom-format/ as text/html 2023-01-03T19:19:27,428 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv7l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-01-03T19:19:27,428 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.14-cp37-cp37m-linux_armv6l.whl#sha256=45dd2e44b2b46efdafb7678246b670cff402736187481b12f037d7f0c4d8f8e1 (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-01-03T19:19:27,428 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp39-cp39-linux_armv7l.whl#sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-01-03T19:19:27,429 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp39-cp39-linux_armv6l.whl#sha256=80b341578111894f67221800901df758240597ef524df0db82477061329f821a (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-01-03T19:19:27,429 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.13-cp37-cp37m-linux_armv7l.whl#sha256=497b24d7afb924a1d676e19148c410da9bcf85cd8edb8a94151b5e550426311b (from https://www.piwheels.org/simple/biom-format/) (requires-python:>=3.6) 2023-01-03T19:19:27,429 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-2.1.10-cp35-cp35m-linux_armv7l.whl#sha256=080adf26e50f59c16f18e79215ed57caf57ad5802a0c712b1495c038ff150a08 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,431 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.10-cp35-cp35m-linux_armv6l.whl#sha256=080adf26e50f59c16f18e79215ed57caf57ad5802a0c712b1495c038ff150a08 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,431 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.1.9-cp39-cp39-linux_armv7l.whl#sha256=641ee241e0ead8290929acb06fdb0566b903d9df28a2e24a2e96cbe71ba5a839 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,432 Skipping link: No binaries permitted for biom-format: 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https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv6l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,446 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp35-cp35m-linux_armv7l.whl#sha256=117a559c6cc285a8c0e94138f1585e93ccef7862532d78e61d3f14d96ab4120f (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,446 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv7l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,446 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-2.0.0-cp34-cp34m-linux_armv6l.whl#sha256=65a3ba75376f8e5cacf4f89448fcc9ca10489d5a7203a89b71e8d9c71919fe33 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,446 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.3.1-py3-none-any.whl#sha256=f0b5649cb13509667e6ca75c84e68a1ff1de6716848e8d4f9a3ca8f8ca74b8df (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,447 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.3.0-py3-none-any.whl#sha256=ee9d81bea91a7c7da55697863c1b003aca4d14b7f7416fcb8c22e169e54aabe6 (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,447 Skipping link: No binaries permitted for biom-format: https://www.piwheels.org/simple/biom-format/biom_format-1.2.0.dev0-py3-none-any.whl#sha256=1c6e81249da6f3e19dd7594733329820632b1b6b0355abe79af180116c3b8aba (from https://www.piwheels.org/simple/biom-format/) 2023-01-03T19:19:27,447 Skipping link: not a file: https://www.piwheels.org/simple/biom-format/ 2023-01-03T19:19:27,447 Skipping link: not a file: https://pypi.org/simple/biom-format/ 2023-01-03T19:19:27,468 Given no hashes to check 1 links for project 'biom-format': discarding no candidates 2023-01-03T19:19:27,485 Collecting biom-format==2.1.14 2023-01-03T19:19:27,487 Created temporary directory: /tmp/pip-unpack-3nckweg7 2023-01-03T19:19:27,538 Downloading biom-format-2.1.14.tar.gz (11.7 MB) 2023-01-03T19:19:30,618 Added biom-format==2.1.14 from https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz to build tracker '/tmp/pip-build-tracker-4mv5c04j' 2023-01-03T19:19:30,624 Created temporary directory: /tmp/pip-build-env-3etqtca2 2023-01-03T19:19:30,632 Installing build dependencies: started 2023-01-03T19:19:30,633 Running command pip subprocess to install build dependencies 2023-01-03T19:19:31,852 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-01-03T19:19:32,255 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-03T19:19:32,280 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-03T19:19:34,244 Collecting setuptools 2023-01-03T19:19:34,438 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.6.3-py3-none-any.whl (1.2 MB) 2023-01-03T19:19:34,775 Collecting wheel 2023-01-03T19:19:34,822 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-01-03T19:19:36,079 Collecting numpy 2023-01-03T19:19:37,349 Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.1-cp39-cp39-linux_armv7l.whl (12.3 MB) 2023-01-03T19:19:39,069 Collecting cython 2023-01-03T19:19:40,211 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.32-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-01-03T19:19:42,410 Installing collected packages: wheel, setuptools, numpy, cython 2023-01-03T19:19:42,557 Creating /tmp/pip-build-env-3etqtca2/overlay/bin 2023-01-03T19:19:42,560 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/wheel to 755 2023-01-03T19:19:53,885 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/f2py to 755 2023-01-03T19:19:53,887 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/f2py3 to 755 2023-01-03T19:19:53,889 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/f2py3.9 to 755 2023-01-03T19:19:56,745 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/cygdb to 755 2023-01-03T19:19:56,748 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/cython to 755 2023-01-03T19:19:56,751 changing mode of /tmp/pip-build-env-3etqtca2/overlay/bin/cythonize to 755 2023-01-03T19:19:56,776 Successfully installed cython-0.29.32 numpy-1.24.1 setuptools-65.6.3 wheel-0.38.4 2023-01-03T19:19:56,791 [notice] A new release of pip available: 22.3 -> 22.3.1 2023-01-03T19:19:56,792 [notice] To update, run: python3 -m pip install --upgrade pip 2023-01-03T19:19:57,169 Installing build dependencies: finished with status 'done' 2023-01-03T19:19:57,182 Getting requirements to build wheel: started 2023-01-03T19:19:57,183 Running command Getting requirements to build wheel 2023-01-03T19:19:59,269 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zwl8g7mt/biom-format_13e423a2b26745fd9602dd034ce5d10b/biom/_filter.pyx 2023-01-03T19:19:59,270 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-03T19:20:00,122 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zwl8g7mt/biom-format_13e423a2b26745fd9602dd034ce5d10b/biom/_subsample.pyx 2023-01-03T19:20:00,122 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-03T19:20:00,858 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-zwl8g7mt/biom-format_13e423a2b26745fd9602dd034ce5d10b/biom/_transform.pyx 2023-01-03T19:20:00,858 tree = Parsing.p_module(s, pxd, full_module_name) 2023-01-03T19:20:01,467 Compiling biom/_filter.pyx because it changed. 2023-01-03T19:20:01,467 Compiling biom/_transform.pyx because it changed. 2023-01-03T19:20:01,468 Compiling biom/_subsample.pyx because it changed. 2023-01-03T19:20:01,468 [1/3] Cythonizing biom/_filter.pyx 2023-01-03T19:20:01,468 [2/3] Cythonizing biom/_subsample.pyx 2023-01-03T19:20:01,468 [3/3] Cythonizing biom/_transform.pyx 2023-01-03T19:20:01,603 running egg_info 2023-01-03T19:20:01,610 writing biom_format.egg-info/PKG-INFO 2023-01-03T19:20:01,613 writing dependency_links to biom_format.egg-info/dependency_links.txt 2023-01-03T19:20:01,615 writing entry points to biom_format.egg-info/entry_points.txt 2023-01-03T19:20:01,616 writing requirements to biom_format.egg-info/requires.txt 2023-01-03T19:20:01,617 writing top-level names to biom_format.egg-info/top_level.txt 2023-01-03T19:20:01,651 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:01,680 reading manifest template 'MANIFEST.in' 2023-01-03T19:20:01,692 warning: no directories found matching 'support_files' 2023-01-03T19:20:01,701 warning: no directories found matching 'tests/test_data' 2023-01-03T19:20:01,702 no previously-included directories found matching 'docs/_build' 2023-01-03T19:20:01,704 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-01-03T19:20:01,705 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-01-03T19:20:01,706 warning: no previously-included files matching '.git' found anywhere in distribution 2023-01-03T19:20:01,709 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-01-03T19:20:01,710 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2023-01-03T19:20:01,711 adding license file 'COPYING.txt' 2023-01-03T19:20:01,723 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:02,051 Getting requirements to build wheel: finished with status 'done' 2023-01-03T19:20:02,061 Created temporary directory: /tmp/pip-modern-metadata-51z2dfdg 2023-01-03T19:20:02,063 Preparing metadata (pyproject.toml): started 2023-01-03T19:20:02,064 Running command Preparing metadata (pyproject.toml) 2023-01-03T19:20:03,936 running dist_info 2023-01-03T19:20:03,960 creating /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info 2023-01-03T19:20:03,965 writing /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/PKG-INFO 2023-01-03T19:20:03,968 writing dependency_links to /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/dependency_links.txt 2023-01-03T19:20:03,970 writing entry points to /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/entry_points.txt 2023-01-03T19:20:03,971 writing requirements to /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/requires.txt 2023-01-03T19:20:03,972 writing top-level names to /tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/top_level.txt 2023-01-03T19:20:03,974 writing manifest file '/tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:04,005 reading manifest file '/tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:04,008 reading manifest template 'MANIFEST.in' 2023-01-03T19:20:04,018 warning: no directories found matching 'support_files' 2023-01-03T19:20:04,024 warning: no directories found matching 'tests/test_data' 2023-01-03T19:20:04,024 no previously-included directories found matching 'docs/_build' 2023-01-03T19:20:04,025 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-01-03T19:20:04,026 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-01-03T19:20:04,027 warning: no previously-included files matching '.git' found anywhere in distribution 2023-01-03T19:20:04,029 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-01-03T19:20:04,030 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2023-01-03T19:20:04,031 adding license file 'COPYING.txt' 2023-01-03T19:20:04,040 writing manifest file '/tmp/pip-modern-metadata-51z2dfdg/biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:04,042 creating '/tmp/pip-modern-metadata-51z2dfdg/biom_format-2.1.14.dist-info' 2023-01-03T19:20:04,316 Preparing metadata (pyproject.toml): finished with status 'done' 2023-01-03T19:20:04,323 Source in /tmp/pip-wheel-zwl8g7mt/biom-format_13e423a2b26745fd9602dd034ce5d10b has version 2.1.14, which satisfies requirement biom-format==2.1.14 from https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz 2023-01-03T19:20:04,324 Removed biom-format==2.1.14 from https://files.pythonhosted.org/packages/8e/2c/132267e58172821fc15fa3856f53ed09b607837fe06e2bb60b230005951d/biom-format-2.1.14.tar.gz from build tracker '/tmp/pip-build-tracker-4mv5c04j' 2023-01-03T19:20:04,330 Created temporary directory: /tmp/pip-unpack-5ra3x9d9 2023-01-03T19:20:04,331 Building wheels for collected packages: biom-format 2023-01-03T19:20:04,339 Created temporary directory: /tmp/pip-wheel-3sb3hh7v 2023-01-03T19:20:04,339 Destination directory: /tmp/pip-wheel-3sb3hh7v 2023-01-03T19:20:04,342 Building wheel for biom-format (pyproject.toml): started 2023-01-03T19:20:04,342 Running command Building wheel for biom-format (pyproject.toml) 2023-01-03T19:20:06,233 running bdist_wheel 2023-01-03T19:20:06,258 running build 2023-01-03T19:20:06,258 running build_py 2023-01-03T19:20:06,268 creating build 2023-01-03T19:20:06,268 creating build/lib.linux-armv7l-cpython-39 2023-01-03T19:20:06,269 creating build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,270 copying biom/err.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,273 copying biom/parse.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,276 copying biom/__init__.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,278 copying biom/table.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,285 copying biom/exception.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,287 copying biom/util.py -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,291 creating build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,292 copying biom/cli/metadata_exporter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,294 copying biom/cli/table_subsetter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,296 copying biom/cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,298 copying biom/cli/table_validator.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,300 copying biom/cli/table_ids.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,302 copying biom/cli/table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,305 copying biom/cli/table_head.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,306 copying biom/cli/table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,308 copying biom/cli/metadata_adder.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,310 copying biom/cli/uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,312 copying biom/cli/util.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,314 copying biom/cli/installation_informer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,316 copying biom/cli/table_summarizer.py -> build/lib.linux-armv7l-cpython-39/biom/cli 2023-01-03T19:20:06,319 creating build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,320 copying biom/tests/test_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,326 copying biom/tests/test_parse.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,330 copying biom/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,331 copying biom/tests/test_err.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,334 copying biom/tests/test_util.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,336 copying biom/tests/long_lines.py -> build/lib.linux-armv7l-cpython-39/biom/tests 2023-01-03T19:20:06,339 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:06,340 copying biom/tests/test_data/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:06,342 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,343 copying biom/tests/test_cli/test_summarize_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,345 copying biom/tests/test_cli/test_uc_processor.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,347 copying biom/tests/test_cli/test_show_install_info.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,349 copying biom/tests/test_cli/__init__.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,351 copying biom/tests/test_cli/test_validate_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,354 copying biom/tests/test_cli/test_table_converter.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,356 copying biom/tests/test_cli/test_add_metadata.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,358 copying biom/tests/test_cli/test_subset_table.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,361 copying biom/tests/test_cli/test_table_normalizer.py -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli 2023-01-03T19:20:06,362 running egg_info 2023-01-03T19:20:06,385 writing biom_format.egg-info/PKG-INFO 2023-01-03T19:20:06,387 writing dependency_links to biom_format.egg-info/dependency_links.txt 2023-01-03T19:20:06,389 writing entry points to biom_format.egg-info/entry_points.txt 2023-01-03T19:20:06,391 writing requirements to biom_format.egg-info/requires.txt 2023-01-03T19:20:06,392 writing top-level names to biom_format.egg-info/top_level.txt 2023-01-03T19:20:06,405 reading manifest file 'biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:06,411 reading manifest template 'MANIFEST.in' 2023-01-03T19:20:06,421 warning: no directories found matching 'support_files' 2023-01-03T19:20:06,426 warning: no directories found matching 'tests/test_data' 2023-01-03T19:20:06,427 no previously-included directories found matching 'docs/_build' 2023-01-03T19:20:06,429 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2023-01-03T19:20:06,430 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2023-01-03T19:20:06,432 warning: no previously-included files matching '.git' found anywhere in distribution 2023-01-03T19:20:06,434 warning: no previously-included files matching '*.so' found anywhere in distribution 2023-01-03T19:20:06,436 warning: no previously-included files matching '.*.swp' found anywhere in distribution 2023-01-03T19:20:06,436 adding license file 'COPYING.txt' 2023-01-03T19:20:06,448 writing manifest file 'biom_format.egg-info/SOURCES.txt' 2023-01-03T19:20:06,451 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.assets' as data is deprecated, please list it in `packages`. 2023-01-03T19:20:06,451 !! 2023-01-03T19:20:06,452 ############################ 2023-01-03T19:20:06,452 # Package would be ignored # 2023-01-03T19:20:06,452 ############################ 2023-01-03T19:20:06,452 Python recognizes 'biom.assets' as an importable package, 2023-01-03T19:20:06,452 but it is not listed in the `packages` configuration of setuptools. 2023-01-03T19:20:06,452 'biom.assets' has been automatically added to the distribution only 2023-01-03T19:20:06,453 because it may contain data files, but this behavior is likely to change 2023-01-03T19:20:06,453 in future versions of setuptools (and therefore is considered deprecated). 2023-01-03T19:20:06,453 Please make sure that 'biom.assets' is included as a package by using 2023-01-03T19:20:06,453 the `packages` configuration field or the proper discovery methods 2023-01-03T19:20:06,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-03T19:20:06,453 instead of `find_packages(...)`/`find:`). 2023-01-03T19:20:06,453 You can read more about "package discovery" and "data files" on setuptools 2023-01-03T19:20:06,454 documentation page. 2023-01-03T19:20:06,454 !! 2023-01-03T19:20:06,454 check.warn(importable) 2023-01-03T19:20:06,454 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.bench_tables' as data is deprecated, please list it in `packages`. 2023-01-03T19:20:06,454 !! 2023-01-03T19:20:06,455 ############################ 2023-01-03T19:20:06,455 # Package would be ignored # 2023-01-03T19:20:06,455 ############################ 2023-01-03T19:20:06,455 Python recognizes 'biom.tests.bench_tables' as an importable package, 2023-01-03T19:20:06,455 but it is not listed in the `packages` configuration of setuptools. 2023-01-03T19:20:06,455 'biom.tests.bench_tables' has been automatically added to the distribution only 2023-01-03T19:20:06,456 because it may contain data files, but this behavior is likely to change 2023-01-03T19:20:06,456 in future versions of setuptools (and therefore is considered deprecated). 2023-01-03T19:20:06,456 Please make sure that 'biom.tests.bench_tables' is included as a package by using 2023-01-03T19:20:06,456 the `packages` configuration field or the proper discovery methods 2023-01-03T19:20:06,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-03T19:20:06,456 instead of `find_packages(...)`/`find:`). 2023-01-03T19:20:06,456 You can read more about "package discovery" and "data files" on setuptools 2023-01-03T19:20:06,457 documentation page. 2023-01-03T19:20:06,457 !! 2023-01-03T19:20:06,457 check.warn(importable) 2023-01-03T19:20:06,459 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biom.tests.test_cli.test_data' as data is deprecated, please list it in `packages`. 2023-01-03T19:20:06,459 !! 2023-01-03T19:20:06,459 ############################ 2023-01-03T19:20:06,459 # Package would be ignored # 2023-01-03T19:20:06,459 ############################ 2023-01-03T19:20:06,460 Python recognizes 'biom.tests.test_cli.test_data' as an importable package, 2023-01-03T19:20:06,460 but it is not listed in the `packages` configuration of setuptools. 2023-01-03T19:20:06,460 'biom.tests.test_cli.test_data' has been automatically added to the distribution only 2023-01-03T19:20:06,460 because it may contain data files, but this behavior is likely to change 2023-01-03T19:20:06,460 in future versions of setuptools (and therefore is considered deprecated). 2023-01-03T19:20:06,460 Please make sure that 'biom.tests.test_cli.test_data' is included as a package by using 2023-01-03T19:20:06,461 the `packages` configuration field or the proper discovery methods 2023-01-03T19:20:06,461 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-03T19:20:06,461 instead of `find_packages(...)`/`find:`). 2023-01-03T19:20:06,461 You can read more about "package discovery" and "data files" on setuptools 2023-01-03T19:20:06,461 documentation page. 2023-01-03T19:20:06,461 !! 2023-01-03T19:20:06,462 check.warn(importable) 2023-01-03T19:20:06,470 copying biom/_filter.pyx -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,473 copying biom/_subsample.pyx -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,475 copying biom/_transform.pyx -> build/lib.linux-armv7l-cpython-39/biom 2023-01-03T19:20:06,477 creating build/lib.linux-armv7l-cpython-39/biom/assets 2023-01-03T19:20:06,478 copying biom/assets/exercise_api.py -> build/lib.linux-armv7l-cpython-39/biom/assets 2023-01-03T19:20:06,480 copying biom/assets/exercise_cli.sh -> build/lib.linux-armv7l-cpython-39/biom/assets 2023-01-03T19:20:06,483 creating build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:06,483 copying biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:06,491 copying biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:06,507 copying biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:06,559 copying biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:06,577 copying biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,037 copying biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,134 copying biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,138 copying biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,147 copying biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,157 copying biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,170 copying biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,235 copying biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,280 copying biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,284 copying biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,293 copying biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,297 copying biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,307 copying biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,316 copying biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,328 copying biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,332 copying biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,341 copying biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,344 copying biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,354 copying biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,357 copying biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,367 copying biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,371 copying biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,382 copying biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,391 copying biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,404 copying biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,461 copying biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,517 copying biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,520 copying biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,525 copying biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,529 copying biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,534 copying biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,542 copying biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,547 copying biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,549 copying biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,554 copying biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,557 copying biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,561 copying biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,565 copying biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,570 copying biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,572 copying biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,577 copying biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,579 copying biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,583 copying biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,586 copying biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,591 copying biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,594 copying biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,604 copying biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,608 copying biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,618 copying biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,626 copying biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,640 copying biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,643 copying biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,647 copying biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,650 copying biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,654 copying biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,657 copying biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,662 copying biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,664 copying biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,668 copying biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,670 copying biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,674 copying biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,676 copying biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,680 copying biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,682 copying biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,685 copying biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,688 copying biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,691 copying biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,693 copying biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,697 copying biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,700 copying biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,714 copying biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,718 copying biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,732 copying biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,736 copying biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,746 copying biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,749 copying biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,753 copying biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,756 copying biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,760 copying biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,763 copying biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,768 copying biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,771 copying biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,775 copying biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,777 copying biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,781 copying biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,784 copying biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,788 copying biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,790 copying biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,794 copying biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,796 copying biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,800 copying biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,803 copying biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables 2023-01-03T19:20:07,807 copying biom/tests/test_data/bad_table.txt -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,809 copying biom/tests/test_data/bad_table.txt.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,812 copying biom/tests/test_data/empty.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,815 copying biom/tests/test_data/no-contents.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,817 copying biom/tests/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,821 copying biom/tests/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,824 copying biom/tests/test_data/test.json.gz -> build/lib.linux-armv7l-cpython-39/biom/tests/test_data 2023-01-03T19:20:07,827 creating build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2023-01-03T19:20:07,828 copying biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2023-01-03T19:20:07,831 copying biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2023-01-03T19:20:07,834 copying biom/tests/test_cli/test_data/test.biom -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2023-01-03T19:20:07,838 copying biom/tests/test_cli/test_data/test.json -> build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data 2023-01-03T19:20:07,844 running build_ext 2023-01-03T19:20:07,849 building 'biom._filter' extension 2023-01-03T19:20:07,851 creating build/temp.linux-armv7l-cpython-39 2023-01-03T19:20:07,851 creating build/temp.linux-armv7l-cpython-39/biom 2023-01-03T19:20:07,853 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_filter.c -o build/temp.linux-armv7l-cpython-39/biom/_filter.o 2023-01-03T19:20:08,250 In file included from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-01-03T19:20:08,250 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-01-03T19:20:08,250 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-01-03T19:20:08,251 from biom/_filter.c:768: 2023-01-03T19:20:08,251 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-01-03T19:20:08,251 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-01-03T19:20:08,251 | ^~~~~~~ 2023-01-03T19:20:14,736 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_filter.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so 2023-01-03T19:20:14,868 building 'biom._transform' extension 2023-01-03T19:20:14,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_transform.c -o build/temp.linux-armv7l-cpython-39/biom/_transform.o 2023-01-03T19:20:15,198 In file included from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-01-03T19:20:15,199 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-01-03T19:20:15,199 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-01-03T19:20:15,199 from biom/_transform.c:768: 2023-01-03T19:20:15,199 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-01-03T19:20:15,199 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-01-03T19:20:15,199 | ^~~~~~~ 2023-01-03T19:20:17,575 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_transform.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so 2023-01-03T19:20:17,696 building 'biom._subsample' extension 2023-01-03T19:20:17,697 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c biom/_subsample.c -o build/temp.linux-armv7l-cpython-39/biom/_subsample.o 2023-01-03T19:20:18,067 In file included from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940, 2023-01-03T19:20:18,067 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, 2023-01-03T19:20:18,067 from /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5, 2023-01-03T19:20:18,067 from biom/_subsample.c:768: 2023-01-03T19:20:18,068 /tmp/pip-build-env-3etqtca2/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 2023-01-03T19:20:18,068 17 | #warning "Using deprecated NumPy API, disable it with " \ 2023-01-03T19:20:18,068 | ^~~~~~~ 2023-01-03T19:20:22,601 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/biom/_subsample.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so 2023-01-03T19:20:22,750 installing to build/bdist.linux-armv7l/wheel 2023-01-03T19:20:22,750 running install 2023-01-03T19:20:22,775 running install_lib 2023-01-03T19:20:22,784 creating build/bdist.linux-armv7l 2023-01-03T19:20:22,785 creating build/bdist.linux-armv7l/wheel 2023-01-03T19:20:22,787 creating build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,788 copying build/lib.linux-armv7l-cpython-39/biom/err.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,791 copying build/lib.linux-armv7l-cpython-39/biom/parse.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,794 copying build/lib.linux-armv7l-cpython-39/biom/_transform.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,802 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.pyx -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,804 copying build/lib.linux-armv7l-cpython-39/biom/_transform.pyx -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,806 creating build/bdist.linux-armv7l/wheel/biom/assets 2023-01-03T19:20:22,807 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_cli.sh -> build/bdist.linux-armv7l/wheel/biom/assets 2023-01-03T19:20:22,809 copying build/lib.linux-armv7l-cpython-39/biom/assets/exercise_api.py -> build/bdist.linux-armv7l/wheel/biom/assets 2023-01-03T19:20:22,811 copying build/lib.linux-armv7l-cpython-39/biom/__init__.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,813 copying build/lib.linux-armv7l-cpython-39/biom/_subsample.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:22,825 creating build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,826 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_exporter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,828 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_subsetter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,830 copying build/lib.linux-armv7l-cpython-39/biom/cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,833 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_validator.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,836 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_ids.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,838 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_converter.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,840 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_head.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,842 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,845 copying build/lib.linux-armv7l-cpython-39/biom/cli/metadata_adder.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,847 copying build/lib.linux-armv7l-cpython-39/biom/cli/uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,849 copying build/lib.linux-armv7l-cpython-39/biom/cli/util.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,851 copying build/lib.linux-armv7l-cpython-39/biom/cli/installation_informer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,853 copying build/lib.linux-armv7l-cpython-39/biom/cli/table_summarizer.py -> build/bdist.linux-armv7l/wheel/biom/cli 2023-01-03T19:20:22,856 creating build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,857 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_table.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,866 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_parse.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,871 creating build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,871 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,874 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,877 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/empty.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,880 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,882 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/no-contents.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,884 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,886 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/bad_table.txt.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,888 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_data/test.json.gz -> build/bdist.linux-armv7l/wheel/biom/tests/test_data 2023-01-03T19:20:22,890 copying build/lib.linux-armv7l-cpython-39/biom/tests/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,892 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_err.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,895 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,896 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_summarize_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,898 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_uc_processor.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,901 creating build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2023-01-03T19:20:22,902 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.json -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2023-01-03T19:20:22,904 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/test.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2023-01-03T19:20:22,908 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_obs_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2023-01-03T19:20:22,910 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_data/json_sample_collapsed.biom -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli/test_data 2023-01-03T19:20:22,912 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_show_install_info.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,914 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/__init__.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,916 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_validate_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,919 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_converter.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,922 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_add_metadata.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,924 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_subset_table.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,927 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_cli/test_table_normalizer.py -> build/bdist.linux-armv7l/wheel/biom/tests/test_cli 2023-01-03T19:20:22,929 copying build/lib.linux-armv7l-cpython-39/biom/tests/test_util.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,932 copying build/lib.linux-armv7l-cpython-39/biom/tests/long_lines.py -> build/bdist.linux-armv7l/wheel/biom/tests 2023-01-03T19:20:22,940 creating build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,941 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,951 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,960 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,964 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,984 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,988 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:22,997 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,000 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,007 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,060 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,068 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,078 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,088 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,090 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,092 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,095 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,103 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,107 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,111 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,113 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,115 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,117 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,121 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,125 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,129 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,131 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,147 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,160 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,162 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,165 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,167 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,171 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,230 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,240 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,243 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,246 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,248 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,252 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,257 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,260 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,265 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,269 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,360 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,364 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,377 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,387 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,390 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,394 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,397 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,402 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,406 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,410 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,420 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,884 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,887 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,889 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,929 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,931 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,933 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,937 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,940 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,950 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,953 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,957 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,961 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,964 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,974 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10000x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,977 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,993 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,995 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:23,997 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,010 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,019 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,023 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,025 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,030 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,034 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,043 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,055 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,058 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,062 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,113 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,121 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,125 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,136 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,192 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,194 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,197 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,200 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,204 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,207 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.001_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,209 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,212 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x10x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,214 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/10x100x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,216 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x1000x0.100_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,219 copying build/lib.linux-armv7l-cpython-39/biom/tests/bench_tables/100x10x0.010_bench.biom.gz -> build/bdist.linux-armv7l/wheel/biom/tests/bench_tables 2023-01-03T19:20:24,221 copying build/lib.linux-armv7l-cpython-39/biom/_filter.pyx -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:24,223 copying build/lib.linux-armv7l-cpython-39/biom/table.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:24,230 copying build/lib.linux-armv7l-cpython-39/biom/_filter.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:24,240 copying build/lib.linux-armv7l-cpython-39/biom/exception.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:24,242 copying build/lib.linux-armv7l-cpython-39/biom/util.py -> build/bdist.linux-armv7l/wheel/biom 2023-01-03T19:20:24,245 running install_egg_info 2023-01-03T19:20:24,259 Copying biom_format.egg-info to build/bdist.linux-armv7l/wheel/biom_format-2.1.14-py3.9.egg-info 2023-01-03T19:20:24,272 running install_scripts 2023-01-03T19:20:24,352 creating build/bdist.linux-armv7l/wheel/biom_format-2.1.14.dist-info/WHEEL 2023-01-03T19:20:24,355 creating '/tmp/pip-wheel-3sb3hh7v/.tmp-frlc3rto/biom_format-2.1.14-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-03T19:20:24,358 adding 'biom/__init__.py' 2023-01-03T19:20:24,445 adding 'biom/_filter.cpython-39-arm-linux-gnueabihf.so' 2023-01-03T19:20:24,449 adding 'biom/_filter.pyx' 2023-01-03T19:20:24,504 adding 'biom/_subsample.cpython-39-arm-linux-gnueabihf.so' 2023-01-03T19:20:24,508 adding 'biom/_subsample.pyx' 2023-01-03T19:20:24,543 adding 'biom/_transform.cpython-39-arm-linux-gnueabihf.so' 2023-01-03T19:20:24,545 adding 'biom/_transform.pyx' 2023-01-03T19:20:24,547 adding 'biom/err.py' 2023-01-03T19:20:24,549 adding 'biom/exception.py' 2023-01-03T19:20:24,552 adding 'biom/parse.py' 2023-01-03T19:20:24,574 adding 'biom/table.py' 2023-01-03T19:20:24,578 adding 'biom/util.py' 2023-01-03T19:20:24,580 adding 'biom/assets/exercise_api.py' 2023-01-03T19:20:24,582 adding 'biom/assets/exercise_cli.sh' 2023-01-03T19:20:24,584 adding 'biom/cli/__init__.py' 2023-01-03T19:20:24,585 adding 'biom/cli/installation_informer.py' 2023-01-03T19:20:24,587 adding 'biom/cli/metadata_adder.py' 2023-01-03T19:20:24,588 adding 'biom/cli/metadata_exporter.py' 2023-01-03T19:20:24,590 adding 'biom/cli/table_converter.py' 2023-01-03T19:20:24,592 adding 'biom/cli/table_head.py' 2023-01-03T19:20:24,593 adding 'biom/cli/table_ids.py' 2023-01-03T19:20:24,595 adding 'biom/cli/table_normalizer.py' 2023-01-03T19:20:24,596 adding 'biom/cli/table_subsetter.py' 2023-01-03T19:20:24,598 adding 'biom/cli/table_summarizer.py' 2023-01-03T19:20:24,600 adding 'biom/cli/table_validator.py' 2023-01-03T19:20:24,602 adding 'biom/cli/uc_processor.py' 2023-01-03T19:20:24,603 adding 'biom/cli/util.py' 2023-01-03T19:20:24,605 adding 'biom/tests/__init__.py' 2023-01-03T19:20:24,607 adding 'biom/tests/long_lines.py' 2023-01-03T19:20:24,608 adding 'biom/tests/test_err.py' 2023-01-03T19:20:24,613 adding 'biom/tests/test_parse.py' 2023-01-03T19:20:24,628 adding 'biom/tests/test_table.py' 2023-01-03T19:20:24,631 adding 'biom/tests/test_util.py' 2023-01-03T19:20:24,644 adding 'biom/tests/bench_tables/10000x10000x0.001_bench.biom.gz' 2023-01-03T19:20:24,749 adding 'biom/tests/bench_tables/10000x10000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:24,835 adding 'biom/tests/bench_tables/10000x10000x0.010_bench.biom.gz' 2023-01-03T19:20:24,971 adding 'biom/tests/bench_tables/10000x10000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:25,549 adding 'biom/tests/bench_tables/10000x10000x0.100_bench.biom.gz' 2023-01-03T19:20:26,042 adding 'biom/tests/bench_tables/10000x10000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:26,076 adding 'biom/tests/bench_tables/10000x1000x0.001_bench.biom.gz' 2023-01-03T19:20:26,134 adding 'biom/tests/bench_tables/10000x1000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:26,166 adding 'biom/tests/bench_tables/10000x1000x0.010_bench.biom.gz' 2023-01-03T19:20:26,242 adding 'biom/tests/bench_tables/10000x1000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:26,499 adding 'biom/tests/bench_tables/10000x1000x0.100_bench.biom.gz' 2023-01-03T19:20:26,769 adding 'biom/tests/bench_tables/10000x1000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:26,783 adding 'biom/tests/bench_tables/10000x100x0.001_bench.biom.gz' 2023-01-03T19:20:26,833 adding 'biom/tests/bench_tables/10000x100x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:26,840 adding 'biom/tests/bench_tables/10000x100x0.010_bench.biom.gz' 2023-01-03T19:20:26,892 adding 'biom/tests/bench_tables/10000x100x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:26,913 adding 'biom/tests/bench_tables/10000x100x0.100_bench.biom.gz' 2023-01-03T19:20:26,978 adding 'biom/tests/bench_tables/10000x100x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:26,983 adding 'biom/tests/bench_tables/10000x10x0.001_bench.biom.gz' 2023-01-03T19:20:27,032 adding 'biom/tests/bench_tables/10000x10x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:27,036 adding 'biom/tests/bench_tables/10000x10x0.010_bench.biom.gz' 2023-01-03T19:20:27,085 adding 'biom/tests/bench_tables/10000x10x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:27,091 adding 'biom/tests/bench_tables/10000x10x0.100_bench.biom.gz' 2023-01-03T19:20:27,142 adding 'biom/tests/bench_tables/10000x10x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:27,149 adding 'biom/tests/bench_tables/1000x10000x0.001_bench.biom.gz' 2023-01-03T19:20:27,205 adding 'biom/tests/bench_tables/1000x10000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:27,245 adding 'biom/tests/bench_tables/1000x10000x0.010_bench.biom.gz' 2023-01-03T19:20:27,325 adding 'biom/tests/bench_tables/1000x10000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:27,634 adding 'biom/tests/bench_tables/1000x10000x0.100_bench.biom.gz' 2023-01-03T19:20:27,981 adding 'biom/tests/bench_tables/1000x10000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:27,998 adding 'biom/tests/bench_tables/1000x1000x0.001_bench.biom.gz' 2023-01-03T19:20:28,008 adding 'biom/tests/bench_tables/1000x1000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,012 adding 'biom/tests/bench_tables/1000x1000x0.010_bench.biom.gz' 2023-01-03T19:20:28,022 adding 'biom/tests/bench_tables/1000x1000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,032 adding 'biom/tests/bench_tables/1000x1000x0.100_bench.biom.gz' 2023-01-03T19:20:28,045 adding 'biom/tests/bench_tables/1000x1000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,048 adding 'biom/tests/bench_tables/1000x100x0.001_bench.biom.gz' 2023-01-03T19:20:28,054 adding 'biom/tests/bench_tables/1000x100x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,056 adding 'biom/tests/bench_tables/1000x100x0.010_bench.biom.gz' 2023-01-03T19:20:28,063 adding 'biom/tests/bench_tables/1000x100x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,067 adding 'biom/tests/bench_tables/1000x100x0.100_bench.biom.gz' 2023-01-03T19:20:28,074 adding 'biom/tests/bench_tables/1000x100x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,077 adding 'biom/tests/bench_tables/1000x10x0.001_bench.biom.gz' 2023-01-03T19:20:28,083 adding 'biom/tests/bench_tables/1000x10x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,085 adding 'biom/tests/bench_tables/1000x10x0.010_bench.biom.gz' 2023-01-03T19:20:28,091 adding 'biom/tests/bench_tables/1000x10x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,093 adding 'biom/tests/bench_tables/1000x10x0.100_bench.biom.gz' 2023-01-03T19:20:28,099 adding 'biom/tests/bench_tables/1000x10x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,102 adding 'biom/tests/bench_tables/100x10000x0.001_bench.biom.gz' 2023-01-03T19:20:28,152 adding 'biom/tests/bench_tables/100x10000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,159 adding 'biom/tests/bench_tables/100x10000x0.010_bench.biom.gz' 2023-01-03T19:20:28,210 adding 'biom/tests/bench_tables/100x10000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,243 adding 'biom/tests/bench_tables/100x10000x0.100_bench.biom.gz' 2023-01-03T19:20:28,320 adding 'biom/tests/bench_tables/100x10000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,324 adding 'biom/tests/bench_tables/100x1000x0.001_bench.biom.gz' 2023-01-03T19:20:28,331 adding 'biom/tests/bench_tables/100x1000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,333 adding 'biom/tests/bench_tables/100x1000x0.010_bench.biom.gz' 2023-01-03T19:20:28,339 adding 'biom/tests/bench_tables/100x1000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,343 adding 'biom/tests/bench_tables/100x1000x0.100_bench.biom.gz' 2023-01-03T19:20:28,351 adding 'biom/tests/bench_tables/100x1000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,353 adding 'biom/tests/bench_tables/100x100x0.001_bench.biom.gz' 2023-01-03T19:20:28,356 adding 'biom/tests/bench_tables/100x100x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,358 adding 'biom/tests/bench_tables/100x100x0.010_bench.biom.gz' 2023-01-03T19:20:28,361 adding 'biom/tests/bench_tables/100x100x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,363 adding 'biom/tests/bench_tables/100x100x0.100_bench.biom.gz' 2023-01-03T19:20:28,365 adding 'biom/tests/bench_tables/100x100x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,367 adding 'biom/tests/bench_tables/100x10x0.001_bench.biom.gz' 2023-01-03T19:20:28,370 adding 'biom/tests/bench_tables/100x10x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,372 adding 'biom/tests/bench_tables/100x10x0.010_bench.biom.gz' 2023-01-03T19:20:28,374 adding 'biom/tests/bench_tables/100x10x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,376 adding 'biom/tests/bench_tables/100x10x0.100_bench.biom.gz' 2023-01-03T19:20:28,379 adding 'biom/tests/bench_tables/100x10x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,381 adding 'biom/tests/bench_tables/10x10000x0.001_bench.biom.gz' 2023-01-03T19:20:28,430 adding 'biom/tests/bench_tables/10x10000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,435 adding 'biom/tests/bench_tables/10x10000x0.010_bench.biom.gz' 2023-01-03T19:20:28,484 adding 'biom/tests/bench_tables/10x10000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,490 adding 'biom/tests/bench_tables/10x10000x0.100_bench.biom.gz' 2023-01-03T19:20:28,541 adding 'biom/tests/bench_tables/10x10000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,545 adding 'biom/tests/bench_tables/10x1000x0.001_bench.biom.gz' 2023-01-03T19:20:28,551 adding 'biom/tests/bench_tables/10x1000x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,553 adding 'biom/tests/bench_tables/10x1000x0.010_bench.biom.gz' 2023-01-03T19:20:28,559 adding 'biom/tests/bench_tables/10x1000x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,561 adding 'biom/tests/bench_tables/10x1000x0.100_bench.biom.gz' 2023-01-03T19:20:28,568 adding 'biom/tests/bench_tables/10x1000x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,570 adding 'biom/tests/bench_tables/10x100x0.001_bench.biom.gz' 2023-01-03T19:20:28,573 adding 'biom/tests/bench_tables/10x100x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,575 adding 'biom/tests/bench_tables/10x100x0.010_bench.biom.gz' 2023-01-03T19:20:28,577 adding 'biom/tests/bench_tables/10x100x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,579 adding 'biom/tests/bench_tables/10x100x0.100_bench.biom.gz' 2023-01-03T19:20:28,582 adding 'biom/tests/bench_tables/10x100x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,583 adding 'biom/tests/bench_tables/10x10x0.001_bench.biom.gz' 2023-01-03T19:20:28,586 adding 'biom/tests/bench_tables/10x10x0.001_bench_hdf5.biom.gz' 2023-01-03T19:20:28,587 adding 'biom/tests/bench_tables/10x10x0.010_bench.biom.gz' 2023-01-03T19:20:28,590 adding 'biom/tests/bench_tables/10x10x0.010_bench_hdf5.biom.gz' 2023-01-03T19:20:28,592 adding 'biom/tests/bench_tables/10x10x0.100_bench.biom.gz' 2023-01-03T19:20:28,594 adding 'biom/tests/bench_tables/10x10x0.100_bench_hdf5.biom.gz' 2023-01-03T19:20:28,596 adding 'biom/tests/test_cli/__init__.py' 2023-01-03T19:20:28,598 adding 'biom/tests/test_cli/test_add_metadata.py' 2023-01-03T19:20:28,600 adding 'biom/tests/test_cli/test_show_install_info.py' 2023-01-03T19:20:28,601 adding 'biom/tests/test_cli/test_subset_table.py' 2023-01-03T19:20:28,603 adding 'biom/tests/test_cli/test_summarize_table.py' 2023-01-03T19:20:28,605 adding 'biom/tests/test_cli/test_table_converter.py' 2023-01-03T19:20:28,606 adding 'biom/tests/test_cli/test_table_normalizer.py' 2023-01-03T19:20:28,608 adding 'biom/tests/test_cli/test_uc_processor.py' 2023-01-03T19:20:28,610 adding 'biom/tests/test_cli/test_validate_table.py' 2023-01-03T19:20:28,612 adding 'biom/tests/test_cli/test_data/json_obs_collapsed.biom' 2023-01-03T19:20:28,614 adding 'biom/tests/test_cli/test_data/json_sample_collapsed.biom' 2023-01-03T19:20:28,617 adding 'biom/tests/test_cli/test_data/test.biom' 2023-01-03T19:20:28,618 adding 'biom/tests/test_cli/test_data/test.json' 2023-01-03T19:20:28,621 adding 'biom/tests/test_data/__init__.py' 2023-01-03T19:20:28,622 adding 'biom/tests/test_data/bad_table.txt' 2023-01-03T19:20:28,623 adding 'biom/tests/test_data/bad_table.txt.gz' 2023-01-03T19:20:28,625 adding 'biom/tests/test_data/empty.biom' 2023-01-03T19:20:28,627 adding 'biom/tests/test_data/no-contents.biom' 2023-01-03T19:20:28,629 adding 'biom/tests/test_data/test.biom' 2023-01-03T19:20:28,631 adding 'biom/tests/test_data/test.json' 2023-01-03T19:20:28,633 adding 'biom/tests/test_data/test.json.gz' 2023-01-03T19:20:28,635 adding 'biom_format-2.1.14.dist-info/COPYING.txt' 2023-01-03T19:20:28,637 adding 'biom_format-2.1.14.dist-info/METADATA' 2023-01-03T19:20:28,638 adding 'biom_format-2.1.14.dist-info/WHEEL' 2023-01-03T19:20:28,639 adding 'biom_format-2.1.14.dist-info/entry_points.txt' 2023-01-03T19:20:28,640 adding 'biom_format-2.1.14.dist-info/top_level.txt' 2023-01-03T19:20:28,643 adding 'biom_format-2.1.14.dist-info/RECORD' 2023-01-03T19:20:28,806 removing build/bdist.linux-armv7l/wheel 2023-01-03T19:20:29,102 Building wheel for biom-format (pyproject.toml): finished with status 'done' 2023-01-03T19:20:29,331 Created wheel for biom-format: filename=biom_format-2.1.14-cp39-cp39-linux_armv7l.whl size=11993199 sha256=ca23d062853e5ba6f0c54ba8cb321444b60c337ff96c5d08f2f365fdf3e7afc0 2023-01-03T19:20:29,332 Stored in directory: /tmp/pip-ephem-wheel-cache-378st03p/wheels/f1/a3/d7/c981eccbcd86c8bafa719aaacacd6b08aebebfa6faab4bd2ef 2023-01-03T19:20:29,355 Successfully built biom-format 2023-01-03T19:20:29,689 Removed build tracker: '/tmp/pip-build-tracker-4mv5c04j'