2023-01-04T21:18:23,673 Created temporary directory: /tmp/pip-ephem-wheel-cache-xu218ci9 2023-01-04T21:18:23,678 Created temporary directory: /tmp/pip-build-tracker-yfvn85fe 2023-01-04T21:18:23,678 Initialized build tracking at /tmp/pip-build-tracker-yfvn85fe 2023-01-04T21:18:23,679 Created build tracker: /tmp/pip-build-tracker-yfvn85fe 2023-01-04T21:18:23,679 Entered build tracker: /tmp/pip-build-tracker-yfvn85fe 2023-01-04T21:18:23,680 Created temporary directory: /tmp/pip-wheel-uu4mgd5r 2023-01-04T21:18:23,688 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-04T21:18:23,693 Created temporary directory: /tmp/pip-ephem-wheel-cache-69sm3z08 2023-01-04T21:18:23,744 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-04T21:18:23,752 2 location(s) to search for versions of sigprofilerassignment: 2023-01-04T21:18:23,752 * https://pypi.org/simple/sigprofilerassignment/ 2023-01-04T21:18:23,752 * https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-04T21:18:23,753 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2023-01-04T21:18:23,754 Getting page https://pypi.org/simple/sigprofilerassignment/ 2023-01-04T21:18:23,757 Found index url https://pypi.org/simple 2023-01-04T21:18:23,986 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2023-01-04T21:18:24,009 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,010 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2023-01-04T21:18:24,011 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,011 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2023-01-04T21:18:24,012 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,013 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2023-01-04T21:18:24,013 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,014 Found link 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https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,016 Found link https://files.pythonhosted.org/packages/50/e5/0606e29d66a591712f8e43b9d2550f9d3c8a7c23b2720149f80424219418/SigProfilerAssignment-0.0.7.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.7 2023-01-04T21:18:24,017 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/b5/e6/bf7281f0f954a6108054031ca43038d77c11074c97615710dfe0d6153edb/SigProfilerAssignment-0.0.8-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,018 Found link https://files.pythonhosted.org/packages/dd/2f/b1f51b32baa819c71f8f872cf621fa6a3b60c7bb151f19b2afee6acf89a2/SigProfilerAssignment-0.0.8.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.8 2023-01-04T21:18:24,018 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-01-04T21:18:24,021 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/98/65/b438b8c59fd28a2b6fe3a8650439d5e4dd12c376f0edddf22f20552920e5/SigProfilerAssignment-0.0.11-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,021 Found link https://files.pythonhosted.org/packages/ad/66/15131e6cc8d00269785242b03348f6b514425db74595f95906dad17abd9c/SigProfilerAssignment-0.0.11.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.11 2023-01-04T21:18:24,022 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,023 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,025 Found link https://files.pythonhosted.org/packages/7d/14/76a03a916457f58fc7af023152a5ebab12e9c5c196e7a431a8dff5fd5713/SigProfilerAssignment-0.0.14.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.14 2023-01-04T21:18:24,026 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/58/11/55f11d7b91ceed9ef2f195917f4d6523936f2cc801b9acc87022e1c53a3c/SigProfilerAssignment-0.0.15-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,026 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2023-01-04T21:18:24,027 Skipping link: No binaries permitted for sigprofilerassignment: 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https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2023-01-04T21:18:24,032 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,032 Found link https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.20 2023-01-04T21:18:24,033 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/4c/fb/d48bbe1457334e1bbca02b03f29e82abe686ad751812f8dbd10ef5ea1de9/SigProfilerAssignment-0.0.21-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,034 Found link https://files.pythonhosted.org/packages/fc/16/c115990c96ef0a4707ef4beb2e4e42da6b40b47d5dde5ea20afaaf28c0e7/SigProfilerAssignment-0.0.21.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.21 2023-01-04T21:18:24,034 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/22/d7/f92b2deff403ceccb880d18574e271b6c16fc8e9b0e5d6e16680c61e8329/SigProfilerAssignment-0.0.22-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,035 Found link https://files.pythonhosted.org/packages/22/ab/8c5ef4325bc74b85006c590c76b3a315ece43ade098fab738ef785e8f2c7/SigProfilerAssignment-0.0.22.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.22 2023-01-04T21:18:24,036 Skipping link: No binaries permitted for sigprofilerassignment: 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2023-01-04T21:18:24,038 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-04T21:18:24,039 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-04T21:18:24,041 Found index url https://www.piwheels.org/simple 2023-01-04T21:18:24,289 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2023-01-04T21:18:24,310 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.23-py3-none-any.whl#sha256=af9289f6299e77006cf2748e637567cd57a4e31ba772f840d05eaa4182439a27 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,311 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.22-py3-none-any.whl#sha256=4d7ecd9f0675cbdea0fa05a5170e3701dea486cb642c5e774810db1421f8897c (from 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https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,318 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.9-py3-none-any.whl#sha256=03dd4968c3c9217d18cb33408e92f87305ef617bbb4887f8524dd596c943dec4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,319 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.8-py3-none-any.whl#sha256=3f5230a1c23cb6df61406f2401c9d4fea5d655bb7f5799b37bb02288aab2e6d5 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,320 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.7-py3-none-any.whl#sha256=6db83fcf7669f563330e9c8b69ef89320b6bee775bb5b7c13f6fa480b75c6c6e (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,320 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,321 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,321 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,322 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,322 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-04T21:18:24,323 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-04T21:18:24,323 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2023-01-04T21:18:24,364 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2023-01-04T21:18:24,394 Collecting sigprofilerassignment==0.0.24 2023-01-04T21:18:24,398 Created temporary directory: /tmp/pip-unpack-ghi7_bbg 2023-01-04T21:18:25,050 Downloading SigProfilerAssignment-0.0.24.tar.gz (4.6 MB) 2023-01-04T21:18:29,256 Added sigprofilerassignment==0.0.24 from https://files.pythonhosted.org/packages/47/28/d7b19bc69544fd452aba4eae8b067f6bf60b4ed316002e14580bc439ae63/SigProfilerAssignment-0.0.24.tar.gz to build tracker '/tmp/pip-build-tracker-yfvn85fe' 2023-01-04T21:18:29,259 Running setup.py (path:/tmp/pip-wheel-uu4mgd5r/sigprofilerassignment_d9fd5ff7f60543b2aa810f4915662734/setup.py) egg_info for package sigprofilerassignment 2023-01-04T21:18:29,260 Created temporary directory: /tmp/pip-pip-egg-info-zhl7qu_o 2023-01-04T21:18:29,261 Preparing metadata (setup.py): started 2023-01-04T21:18:29,263 Running command python setup.py egg_info 2023-01-04T21:18:31,827 running egg_info 2023-01-04T21:18:31,831 creating /tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info 2023-01-04T21:18:31,893 writing /tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/PKG-INFO 2023-01-04T21:18:31,900 writing dependency_links to /tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/dependency_links.txt 2023-01-04T21:18:31,904 writing requirements to /tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/requires.txt 2023-01-04T21:18:31,907 writing top-level names to /tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/top_level.txt 2023-01-04T21:18:31,910 writing manifest file '/tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-04T21:18:32,100 reading manifest file '/tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-04T21:18:32,103 reading manifest template 'MANIFEST.in' 2023-01-04T21:18:32,135 adding license file 'LICENSE.txt' 2023-01-04T21:18:32,154 writing manifest file '/tmp/pip-pip-egg-info-zhl7qu_o/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-04T21:18:32,360 Preparing metadata (setup.py): finished with status 'done' 2023-01-04T21:18:32,375 Source in /tmp/pip-wheel-uu4mgd5r/sigprofilerassignment_d9fd5ff7f60543b2aa810f4915662734 has version 0.0.24, which satisfies requirement sigprofilerassignment==0.0.24 from https://files.pythonhosted.org/packages/47/28/d7b19bc69544fd452aba4eae8b067f6bf60b4ed316002e14580bc439ae63/SigProfilerAssignment-0.0.24.tar.gz 2023-01-04T21:18:32,377 Removed sigprofilerassignment==0.0.24 from https://files.pythonhosted.org/packages/47/28/d7b19bc69544fd452aba4eae8b067f6bf60b4ed316002e14580bc439ae63/SigProfilerAssignment-0.0.24.tar.gz from build tracker '/tmp/pip-build-tracker-yfvn85fe' 2023-01-04T21:18:32,389 Created temporary directory: /tmp/pip-unpack-d1tbghpe 2023-01-04T21:18:32,391 Building wheels for collected packages: sigprofilerassignment 2023-01-04T21:18:32,400 Created temporary directory: /tmp/pip-wheel-lyy8nma9 2023-01-04T21:18:32,400 Building wheel for sigprofilerassignment (setup.py): started 2023-01-04T21:18:32,402 Destination directory: /tmp/pip-wheel-lyy8nma9 2023-01-04T21:18:32,403 Running command python setup.py bdist_wheel 2023-01-04T21:18:34,945 running bdist_wheel 2023-01-04T21:18:35,685 running build 2023-01-04T21:18:35,685 running build_py 2023-01-04T21:18:35,752 creating build 2023-01-04T21:18:35,753 creating build/lib 2023-01-04T21:18:35,754 creating build/lib/SigProfilerAssignment 2023-01-04T21:18:35,755 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,759 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,762 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,768 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,774 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,779 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2023-01-04T21:18:35,782 running egg_info 2023-01-04T21:18:35,974 writing SigProfilerAssignment.egg-info/PKG-INFO 2023-01-04T21:18:35,979 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2023-01-04T21:18:35,982 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2023-01-04T21:18:35,984 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2023-01-04T21:18:36,050 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-04T21:18:36,063 reading manifest template 'MANIFEST.in' 2023-01-04T21:18:36,087 adding license file 'LICENSE.txt' 2023-01-04T21:18:36,113 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-04T21:18:36,119 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,120 !! 2023-01-04T21:18:36,121 ############################ 2023-01-04T21:18:36,121 # Package would be ignored # 2023-01-04T21:18:36,121 ############################ 2023-01-04T21:18:36,122 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2023-01-04T21:18:36,122 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,122 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2023-01-04T21:18:36,123 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,123 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,124 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2023-01-04T21:18:36,124 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,124 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,125 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,125 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,125 documentation page. 2023-01-04T21:18:36,126 !! 2023-01-04T21:18:36,127 check.warn(importable) 2023-01-04T21:18:36,127 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,128 !! 2023-01-04T21:18:36,129 ############################ 2023-01-04T21:18:36,129 # Package would be ignored # 2023-01-04T21:18:36,129 ############################ 2023-01-04T21:18:36,130 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package, 2023-01-04T21:18:36,130 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,130 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' has been automatically added to the distribution only 2023-01-04T21:18:36,131 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,131 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,132 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is included as a package by using 2023-01-04T21:18:36,132 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,132 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,133 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,133 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,133 documentation page. 2023-01-04T21:18:36,134 !! 2023-01-04T21:18:36,135 check.warn(importable) 2023-01-04T21:18:36,135 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,135 !! 2023-01-04T21:18:36,136 ############################ 2023-01-04T21:18:36,137 # Package would be ignored # 2023-01-04T21:18:36,137 ############################ 2023-01-04T21:18:36,137 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package, 2023-01-04T21:18:36,137 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,138 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' has been automatically added to the distribution only 2023-01-04T21:18:36,138 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,139 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,139 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is included as a package by using 2023-01-04T21:18:36,140 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,140 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,141 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,141 documentation page. 2023-01-04T21:18:36,142 !! 2023-01-04T21:18:36,142 check.warn(importable) 2023-01-04T21:18:36,143 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,143 !! 2023-01-04T21:18:36,144 ############################ 2023-01-04T21:18:36,144 # Package would be ignored # 2023-01-04T21:18:36,144 ############################ 2023-01-04T21:18:36,145 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2023-01-04T21:18:36,145 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,146 'SigProfilerAssignment.data' has been automatically added to the distribution only 2023-01-04T21:18:36,146 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,146 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,147 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2023-01-04T21:18:36,147 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,147 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,148 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,148 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,149 documentation page. 2023-01-04T21:18:36,149 !! 2023-01-04T21:18:36,150 check.warn(importable) 2023-01-04T21:18:36,150 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,151 !! 2023-01-04T21:18:36,151 ############################ 2023-01-04T21:18:36,152 # Package would be ignored # 2023-01-04T21:18:36,152 ############################ 2023-01-04T21:18:36,152 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2023-01-04T21:18:36,153 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,153 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2023-01-04T21:18:36,153 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,154 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,154 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2023-01-04T21:18:36,155 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,155 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,155 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,156 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,156 documentation page. 2023-01-04T21:18:36,157 !! 2023-01-04T21:18:36,157 check.warn(importable) 2023-01-04T21:18:36,158 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,158 !! 2023-01-04T21:18:36,159 ############################ 2023-01-04T21:18:36,160 # Package would be ignored # 2023-01-04T21:18:36,160 ############################ 2023-01-04T21:18:36,160 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2023-01-04T21:18:36,160 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,161 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2023-01-04T21:18:36,161 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,162 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,162 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2023-01-04T21:18:36,162 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,163 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,163 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,163 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,164 documentation page. 2023-01-04T21:18:36,165 !! 2023-01-04T21:18:36,165 check.warn(importable) 2023-01-04T21:18:36,166 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,166 !! 2023-01-04T21:18:36,167 ############################ 2023-01-04T21:18:36,167 # Package would be ignored # 2023-01-04T21:18:36,167 ############################ 2023-01-04T21:18:36,167 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2023-01-04T21:18:36,168 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,168 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2023-01-04T21:18:36,169 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,169 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,169 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2023-01-04T21:18:36,170 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,170 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,171 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,171 documentation page. 2023-01-04T21:18:36,172 !! 2023-01-04T21:18:36,173 check.warn(importable) 2023-01-04T21:18:36,173 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,173 !! 2023-01-04T21:18:36,174 ############################ 2023-01-04T21:18:36,174 # Package would be ignored # 2023-01-04T21:18:36,174 ############################ 2023-01-04T21:18:36,175 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2023-01-04T21:18:36,175 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,176 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2023-01-04T21:18:36,176 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,176 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,177 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2023-01-04T21:18:36,177 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,177 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,178 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,178 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,178 documentation page. 2023-01-04T21:18:36,179 !! 2023-01-04T21:18:36,180 check.warn(importable) 2023-01-04T21:18:36,180 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,180 !! 2023-01-04T21:18:36,181 ############################ 2023-01-04T21:18:36,181 # Package would be ignored # 2023-01-04T21:18:36,182 ############################ 2023-01-04T21:18:36,182 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2023-01-04T21:18:36,182 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,183 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2023-01-04T21:18:36,183 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,183 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,184 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2023-01-04T21:18:36,185 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,185 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,185 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,186 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,187 documentation page. 2023-01-04T21:18:36,188 !! 2023-01-04T21:18:36,189 check.warn(importable) 2023-01-04T21:18:36,190 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,190 !! 2023-01-04T21:18:36,191 ############################ 2023-01-04T21:18:36,192 # Package would be ignored # 2023-01-04T21:18:36,192 ############################ 2023-01-04T21:18:36,193 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2023-01-04T21:18:36,193 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,195 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2023-01-04T21:18:36,195 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,195 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,196 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2023-01-04T21:18:36,197 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,197 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,198 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,199 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,199 documentation page. 2023-01-04T21:18:36,201 !! 2023-01-04T21:18:36,202 check.warn(importable) 2023-01-04T21:18:36,202 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,203 !! 2023-01-04T21:18:36,204 ############################ 2023-01-04T21:18:36,205 # Package would be ignored # 2023-01-04T21:18:36,205 ############################ 2023-01-04T21:18:36,206 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2023-01-04T21:18:36,206 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,207 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2023-01-04T21:18:36,208 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,208 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,209 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2023-01-04T21:18:36,210 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,211 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,211 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,212 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,213 documentation page. 2023-01-04T21:18:36,215 !! 2023-01-04T21:18:36,215 check.warn(importable) 2023-01-04T21:18:36,216 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2023-01-04T21:18:36,216 !! 2023-01-04T21:18:36,217 ############################ 2023-01-04T21:18:36,217 # Package would be ignored # 2023-01-04T21:18:36,218 ############################ 2023-01-04T21:18:36,218 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2023-01-04T21:18:36,219 but it is not listed in the `packages` configuration of setuptools. 2023-01-04T21:18:36,219 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2023-01-04T21:18:36,220 because it may contain data files, but this behavior is likely to change 2023-01-04T21:18:36,220 in future versions of setuptools (and therefore is considered deprecated). 2023-01-04T21:18:36,221 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2023-01-04T21:18:36,221 the `packages` configuration field or the proper discovery methods 2023-01-04T21:18:36,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-04T21:18:36,222 instead of `find_packages(...)`/`find:`). 2023-01-04T21:18:36,223 You can read more about "package discovery" and "data files" on setuptools 2023-01-04T21:18:36,223 documentation page. 2023-01-04T21:18:36,225 !! 2023-01-04T21:18:36,226 check.warn(importable) 2023-01-04T21:18:36,226 creating build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,226 copying SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,226 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,227 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,227 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,227 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,228 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,228 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,229 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,229 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:36,240 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:36,242 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:36,247 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:36,251 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-04T21:18:36,252 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-04T21:18:36,315 creating build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,316 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,321 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,325 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,331 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,335 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,345 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,370 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,374 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,378 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,382 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,387 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2023-01-04T21:18:36,395 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2023-01-04T21:18:36,396 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,398 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,403 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,410 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,416 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,424 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,429 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,434 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,441 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,454 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,465 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,470 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,476 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,481 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,491 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,503 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,516 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,522 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,527 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,532 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,539 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,555 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,573 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,579 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,585 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,591 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,602 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:36,613 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,614 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,620 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,627 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,634 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,641 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,646 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,651 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,663 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,673 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,679 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,684 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,696 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,707 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,712 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,718 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,732 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,756 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,761 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,766 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,778 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:36,790 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,791 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,797 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,803 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,811 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,818 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,823 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,828 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,841 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,852 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,858 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,863 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,874 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,887 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,892 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,896 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,908 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,920 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,925 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,930 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,941 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:36,954 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,955 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,963 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,969 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,976 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,983 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,988 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:36,993 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,005 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,016 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,021 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,026 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,038 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,049 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,054 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,060 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,072 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,084 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,089 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,095 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,105 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:37,116 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,118 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,124 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,130 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,137 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,144 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,150 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,156 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,168 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,180 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,185 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,191 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,202 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,214 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,219 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,224 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,236 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,248 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,253 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,258 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,271 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,284 creating build/lib/SigProfilerAssignment/data/tests 2023-01-04T21:18:37,286 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-01-04T21:18:37,289 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-01-04T21:18:37,314 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,316 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,321 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,325 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,329 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,333 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,337 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:37,341 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,342 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,349 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,364 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,376 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,395 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:37,481 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-04T21:18:37,482 setuptools.SetuptoolsDeprecationWarning, 2023-01-04T21:18:37,546 installing to build/bdist.linux-armv7l/wheel 2023-01-04T21:18:37,546 running install 2023-01-04T21:18:37,610 running install_lib 2023-01-04T21:18:37,677 creating build/bdist.linux-armv7l 2023-01-04T21:18:37,678 creating build/bdist.linux-armv7l/wheel 2023-01-04T21:18:37,682 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:37,684 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:37,689 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,692 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,697 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,701 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,706 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,730 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,735 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,740 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:37,753 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2023-01-04T21:18:37,757 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,759 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,765 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,778 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,782 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,787 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,791 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,796 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,806 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,819 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,825 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,830 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,835 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,840 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,856 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,861 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,872 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,887 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,901 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,906 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,914 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,919 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,924 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,929 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,943 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,955 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-04T21:18:37,961 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,962 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,974 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,978 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,984 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,990 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:37,996 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,001 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,008 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,031 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,036 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,041 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,051 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,056 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,067 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,081 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,086 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,097 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,102 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,112 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,123 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-04T21:18:38,129 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,131 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,136 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,153 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,166 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,178 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,189 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,194 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,200 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,205 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,211 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,216 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,221 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,229 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,239 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,246 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,262 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,274 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,286 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,292 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,296 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-04T21:18:38,304 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,306 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,318 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,324 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,329 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,335 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,346 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,356 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,362 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,367 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,372 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,377 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,384 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,389 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,400 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,407 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,419 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,431 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,442 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,447 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,452 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-04T21:18:38,463 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,464 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,469 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,474 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,488 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,493 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,506 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,518 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,523 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,530 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,536 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,554 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,567 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,572 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,583 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,590 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,594 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,598 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,608 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,613 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,624 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-04T21:18:38,629 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:38,633 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:38,639 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:38,643 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2023-01-04T21:18:38,645 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-01-04T21:18:38,647 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-01-04T21:18:38,672 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,673 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,677 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,681 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,684 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,688 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,691 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-04T21:18:38,696 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,698 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,709 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,720 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,737 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,749 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-04T21:18:38,755 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-04T21:18:38,758 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:38,761 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:38,768 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:38,774 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:38,781 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,782 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,787 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,792 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,796 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,800 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,804 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,808 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,821 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,825 copying build/lib/SigProfilerAssignment/DecompositionPlots/.DS_Store -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-04T21:18:38,831 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:38,833 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:38,839 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-04T21:18:38,841 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-04T21:18:38,883 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-04T21:18:38,886 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-04T21:18:38,889 running install_egg_info 2023-01-04T21:18:38,963 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.24-py3.7.egg-info 2023-01-04T21:18:38,988 running install_scripts 2023-01-04T21:18:39,179 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2023-01-04T21:18:39,188 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.24.dist-info/WHEEL 2023-01-04T21:18:39,192 creating '/tmp/pip-wheel-lyy8nma9/SigProfilerAssignment-0.0.24-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-04T21:18:39,197 adding 'SigProfilerAssignment/Analyzer.py' 2023-01-04T21:18:39,200 adding 'SigProfilerAssignment/__init__.py' 2023-01-04T21:18:39,212 adding 'SigProfilerAssignment/decompose_subroutines.py' 2023-01-04T21:18:39,221 adding 'SigProfilerAssignment/decomposition.py' 2023-01-04T21:18:39,231 adding 'SigProfilerAssignment/single_sample.py' 2023-01-04T21:18:39,233 adding 'SigProfilerAssignment/version.py' 2023-01-04T21:18:39,237 adding 'SigProfilerAssignment/DecompositionPlots/.DS_Store' 2023-01-04T21:18:39,243 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2023-01-04T21:18:39,248 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2023-01-04T21:18:39,252 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2023-01-04T21:18:39,256 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2023-01-04T21:18:39,261 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2023-01-04T21:18:39,265 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2023-01-04T21:18:39,270 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2023-01-04T21:18:39,295 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2023-01-04T21:18:39,304 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2023-01-04T21:18:39,307 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2023-01-04T21:18:39,581 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2023-01-04T21:18:39,600 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2023-01-04T21:18:39,602 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2023-01-04T21:18:39,610 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2023-01-04T21:18:39,612 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2023-01-04T21:18:39,648 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2023-01-04T21:18:39,754 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2023-01-04T21:18:39,767 adding 'SigProfilerAssignment/data/Samples.txt' 2023-01-04T21:18:39,770 adding 'SigProfilerAssignment/data/csvexample.csv' 2023-01-04T21:18:39,775 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2023-01-04T21:18:39,782 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2023-01-04T21:18:39,816 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2023-01-04T21:18:39,828 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2023-01-04T21:18:39,849 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2023-01-04T21:18:39,870 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2023-01-04T21:18:39,901 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2023-01-04T21:18:39,909 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2023-01-04T21:18:39,917 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2023-01-04T21:18:39,931 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2023-01-04T21:18:40,016 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2023-01-04T21:18:40,104 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2023-01-04T21:18:40,114 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2023-01-04T21:18:40,122 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2023-01-04T21:18:40,136 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2023-01-04T21:18:40,190 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2023-01-04T21:18:40,284 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2023-01-04T21:18:40,380 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2023-01-04T21:18:40,392 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2023-01-04T21:18:40,400 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2023-01-04T21:18:40,407 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2023-01-04T21:18:40,422 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2023-01-04T21:18:40,515 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2023-01-04T21:18:40,613 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2023-01-04T21:18:40,624 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2023-01-04T21:18:40,631 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2023-01-04T21:18:40,645 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2023-01-04T21:18:40,723 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2023-01-04T21:18:40,804 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2023-01-04T21:18:40,829 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2023-01-04T21:18:40,850 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2023-01-04T21:18:40,881 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2023-01-04T21:18:40,912 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2023-01-04T21:18:40,921 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2023-01-04T21:18:40,929 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2023-01-04T21:18:41,014 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2023-01-04T21:18:41,102 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2023-01-04T21:18:41,112 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2023-01-04T21:18:41,120 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2023-01-04T21:18:41,213 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2023-01-04T21:18:41,310 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2023-01-04T21:18:41,320 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2023-01-04T21:18:41,328 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2023-01-04T21:18:41,423 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2023-01-04T21:18:41,521 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2023-01-04T21:18:41,532 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2023-01-04T21:18:41,539 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2023-01-04T21:18:41,618 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2023-01-04T21:18:41,700 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2023-01-04T21:18:41,725 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2023-01-04T21:18:41,746 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2023-01-04T21:18:41,777 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2023-01-04T21:18:41,808 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2023-01-04T21:18:41,816 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2023-01-04T21:18:41,824 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2023-01-04T21:18:41,910 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2023-01-04T21:18:41,998 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2023-01-04T21:18:42,008 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2023-01-04T21:18:42,016 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2023-01-04T21:18:42,109 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2023-01-04T21:18:42,206 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2023-01-04T21:18:42,216 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2023-01-04T21:18:42,224 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2023-01-04T21:18:42,319 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2023-01-04T21:18:42,417 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2023-01-04T21:18:42,428 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2023-01-04T21:18:42,436 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2023-01-04T21:18:42,514 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2023-01-04T21:18:42,596 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2023-01-04T21:18:42,620 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2023-01-04T21:18:42,642 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2023-01-04T21:18:42,673 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2023-01-04T21:18:42,704 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2023-01-04T21:18:42,712 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2023-01-04T21:18:42,720 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2023-01-04T21:18:42,806 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2023-01-04T21:18:42,893 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2023-01-04T21:18:42,904 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2023-01-04T21:18:42,911 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2023-01-04T21:18:43,005 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2023-01-04T21:18:43,101 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2023-01-04T21:18:43,112 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2023-01-04T21:18:43,119 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2023-01-04T21:18:43,215 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2023-01-04T21:18:43,312 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2023-01-04T21:18:43,323 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2023-01-04T21:18:43,331 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2023-01-04T21:18:43,410 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2023-01-04T21:18:43,491 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2023-01-04T21:18:43,515 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2023-01-04T21:18:43,537 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2023-01-04T21:18:43,567 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2023-01-04T21:18:43,598 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2023-01-04T21:18:43,607 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2023-01-04T21:18:43,615 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2023-01-04T21:18:43,700 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2023-01-04T21:18:43,788 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2023-01-04T21:18:43,798 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2023-01-04T21:18:43,806 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2023-01-04T21:18:43,899 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2023-01-04T21:18:43,995 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2023-01-04T21:18:44,005 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2023-01-04T21:18:44,013 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2023-01-04T21:18:44,108 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2023-01-04T21:18:44,205 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2023-01-04T21:18:44,216 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2023-01-04T21:18:44,224 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2023-01-04T21:18:44,303 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2023-01-04T21:18:44,384 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2023-01-04T21:18:44,552 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2023-01-04T21:18:44,564 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2023-01-04T21:18:44,568 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2023-01-04T21:18:44,572 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2023-01-04T21:18:44,575 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2023-01-04T21:18:44,578 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2023-01-04T21:18:44,581 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2023-01-04T21:18:44,596 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2023-01-04T21:18:44,646 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2023-01-04T21:18:44,694 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2023-01-04T21:18:44,778 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2023-01-04T21:18:44,831 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2023-01-04T21:18:44,839 adding 'SigProfilerAssignment-0.0.24.dist-info/LICENSE.txt' 2023-01-04T21:18:44,843 adding 'SigProfilerAssignment-0.0.24.dist-info/METADATA' 2023-01-04T21:18:44,845 adding 'SigProfilerAssignment-0.0.24.dist-info/WHEEL' 2023-01-04T21:18:44,846 adding 'SigProfilerAssignment-0.0.24.dist-info/top_level.txt' 2023-01-04T21:18:44,853 adding 'SigProfilerAssignment-0.0.24.dist-info/RECORD' 2023-01-04T21:18:45,027 removing build/bdist.linux-armv7l/wheel 2023-01-04T21:18:45,356 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2023-01-04T21:18:45,500 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.24-py3-none-any.whl size=4676740 sha256=de5d2be87fef1f1f29c10ba1ecae46fcc3e1b3d114adbf582aa12fa77a26ecc6 2023-01-04T21:18:45,502 Stored in directory: /tmp/pip-ephem-wheel-cache-69sm3z08/wheels/77/ed/92/e1d7a530b7f69182730835eafa1449bab876c0f3d2cc70fe32 2023-01-04T21:18:45,549 Successfully built sigprofilerassignment 2023-01-04T21:18:45,915 Removed build tracker: '/tmp/pip-build-tracker-yfvn85fe'