2023-01-05T15:04:35,784 Created temporary directory: /tmp/pip-ephem-wheel-cache-j_kmznuq 2023-01-05T15:04:35,787 Created temporary directory: /tmp/pip-build-tracker-0wk7c1pd 2023-01-05T15:04:35,787 Initialized build tracking at /tmp/pip-build-tracker-0wk7c1pd 2023-01-05T15:04:35,787 Created build tracker: /tmp/pip-build-tracker-0wk7c1pd 2023-01-05T15:04:35,787 Entered build tracker: /tmp/pip-build-tracker-0wk7c1pd 2023-01-05T15:04:35,788 Created temporary directory: /tmp/pip-wheel-_bc82m4o 2023-01-05T15:04:35,791 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-05T15:04:35,794 Created temporary directory: /tmp/pip-ephem-wheel-cache-q72hshxa 2023-01-05T15:04:35,821 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-05T15:04:35,824 2 location(s) to search for versions of cool-seq-tool: 2023-01-05T15:04:35,824 * https://pypi.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,824 * https://www.piwheels.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,824 Fetching project page and analyzing links: https://pypi.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,825 Getting page https://pypi.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,826 Found index url https://pypi.org/simple 2023-01-05T15:04:35,883 Fetched page https://pypi.org/simple/cool-seq-tool/ as application/vnd.pypi.simple.v1+json 2023-01-05T15:04:35,884 Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/fa/06/a3365ef2f3aa1e7370d16a48e8f058ba6f924d314e1f1e84d8fda49c0085/cool_seq_tool-0.1.4-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2023-01-05T15:04:35,885 Found link https://files.pythonhosted.org/packages/c0/ca/6a1e8e05147b03a4ddfcecfeee10e744bb25afe636633e5d1749189760bd/cool_seq_tool-0.1.4.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.4 2023-01-05T15:04:35,885 Skipping link: No binaries permitted for cool-seq-tool: https://files.pythonhosted.org/packages/02/21/8d61ea0ffb7c583c3348e7ef0bc98ac57fc386410c2488bfbb3b770133d2/cool_seq_tool-0.1.5-py3-none-any.whl (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2023-01-05T15:04:35,886 Found link https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz (from https://pypi.org/simple/cool-seq-tool/) (requires-python:>=3.8), version: 0.1.5 2023-01-05T15:04:35,886 Fetching project page and analyzing links: https://www.piwheels.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,886 Getting page https://www.piwheels.org/simple/cool-seq-tool/ 2023-01-05T15:04:35,887 Found index url https://www.piwheels.org/simple 2023-01-05T15:04:36,062 Fetched page https://www.piwheels.org/simple/cool-seq-tool/ as text/html 2023-01-05T15:04:36,063 Skipping link: No binaries permitted for cool-seq-tool: https://www.piwheels.org/simple/cool-seq-tool/cool_seq_tool-0.1.4-py3-none-any.whl#sha256=99837ef6073c54c2795f87af602a31fb916f37a7c1b365962a9e13f9049b0c3d (from https://www.piwheels.org/simple/cool-seq-tool/) (requires-python:>=3.8) 2023-01-05T15:04:36,063 Skipping link: not a file: https://www.piwheels.org/simple/cool-seq-tool/ 2023-01-05T15:04:36,063 Skipping link: not a file: https://pypi.org/simple/cool-seq-tool/ 2023-01-05T15:04:36,082 Given no hashes to check 1 links for project 'cool-seq-tool': discarding no candidates 2023-01-05T15:04:36,098 Collecting cool-seq-tool==0.1.5 2023-01-05T15:04:36,100 Created temporary directory: /tmp/pip-unpack-lihcsc2r 2023-01-05T15:04:36,548 Downloading cool_seq_tool-0.1.5.tar.gz (4.0 MB) 2023-01-05T15:04:38,212 Added cool-seq-tool==0.1.5 from https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-0wk7c1pd' 2023-01-05T15:04:38,214 Running setup.py (path:/tmp/pip-wheel-_bc82m4o/cool-seq-tool_697a2cf4974148deab7a1793f23ccac3/setup.py) egg_info for package cool-seq-tool 2023-01-05T15:04:38,214 Created temporary directory: /tmp/pip-pip-egg-info-xwul57cz 2023-01-05T15:04:38,215 Preparing metadata (setup.py): started 2023-01-05T15:04:38,216 Running command python setup.py egg_info 2023-01-05T15:04:39,337 running egg_info 2023-01-05T15:04:39,340 creating /tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info 2023-01-05T15:04:39,362 writing /tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/PKG-INFO 2023-01-05T15:04:39,365 writing dependency_links to /tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/dependency_links.txt 2023-01-05T15:04:39,368 writing requirements to /tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/requires.txt 2023-01-05T15:04:39,369 writing top-level names to /tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/top_level.txt 2023-01-05T15:04:39,370 writing manifest file '/tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/SOURCES.txt' 2023-01-05T15:04:39,443 reading manifest file '/tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/SOURCES.txt' 2023-01-05T15:04:39,445 adding license file 'LICENSE' 2023-01-05T15:04:39,448 writing manifest file '/tmp/pip-pip-egg-info-xwul57cz/cool_seq_tool.egg-info/SOURCES.txt' 2023-01-05T15:04:39,563 Preparing metadata (setup.py): finished with status 'done' 2023-01-05T15:04:39,569 Source in /tmp/pip-wheel-_bc82m4o/cool-seq-tool_697a2cf4974148deab7a1793f23ccac3 has version 0.1.5, which satisfies requirement cool-seq-tool==0.1.5 from https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz 2023-01-05T15:04:39,570 Removed cool-seq-tool==0.1.5 from https://files.pythonhosted.org/packages/0a/bf/88f64dd3906c3ac1a79b3d72f11ca950ce3028bea0e114f526432cfdfb86/cool_seq_tool-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-0wk7c1pd' 2023-01-05T15:04:39,577 Created temporary directory: /tmp/pip-unpack-sahsdj3v 2023-01-05T15:04:39,577 Building wheels for collected packages: cool-seq-tool 2023-01-05T15:04:39,582 Created temporary directory: /tmp/pip-wheel-rkavum68 2023-01-05T15:04:39,583 Building wheel for cool-seq-tool (setup.py): started 2023-01-05T15:04:39,584 Destination directory: /tmp/pip-wheel-rkavum68 2023-01-05T15:04:39,584 Running command python setup.py bdist_wheel 2023-01-05T15:04:40,744 running bdist_wheel 2023-01-05T15:04:41,028 running build 2023-01-05T15:04:41,028 running build_py 2023-01-05T15:04:41,055 creating build 2023-01-05T15:04:41,055 creating build/lib 2023-01-05T15:04:41,056 creating build/lib/cool_seq_tool 2023-01-05T15:04:41,057 copying cool_seq_tool/schemas.py -> build/lib/cool_seq_tool 2023-01-05T15:04:41,060 copying cool_seq_tool/main.py -> build/lib/cool_seq_tool 2023-01-05T15:04:41,062 copying cool_seq_tool/cool_seq_tool.py -> build/lib/cool_seq_tool 2023-01-05T15:04:41,065 copying cool_seq_tool/__init__.py -> build/lib/cool_seq_tool 2023-01-05T15:04:41,067 copying cool_seq_tool/version.py -> build/lib/cool_seq_tool 2023-01-05T15:04:41,069 creating build/lib/cool_seq_tool/data 2023-01-05T15:04:41,070 copying cool_seq_tool/data/__init__.py -> build/lib/cool_seq_tool/data 2023-01-05T15:04:41,072 copying cool_seq_tool/data/data_downloads.py -> build/lib/cool_seq_tool/data 2023-01-05T15:04:41,074 creating build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,075 copying cool_seq_tool/data_sources/residue_mode.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,077 copying cool_seq_tool/data_sources/uta_database.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,080 copying cool_seq_tool/data_sources/mane_transcript.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,084 copying cool_seq_tool/data_sources/gene_normalizer.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,085 copying cool_seq_tool/data_sources/__init__.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,087 copying cool_seq_tool/data_sources/transcript_mappings.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,089 copying cool_seq_tool/data_sources/seqrepo_access.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,091 copying cool_seq_tool/data_sources/mane_transcript_mappings.py -> build/lib/cool_seq_tool/data_sources 2023-01-05T15:04:41,093 running egg_info 2023-01-05T15:04:41,150 writing cool_seq_tool.egg-info/PKG-INFO 2023-01-05T15:04:41,152 writing dependency_links to cool_seq_tool.egg-info/dependency_links.txt 2023-01-05T15:04:41,154 writing requirements to cool_seq_tool.egg-info/requires.txt 2023-01-05T15:04:41,156 writing top-level names to cool_seq_tool.egg-info/top_level.txt 2023-01-05T15:04:41,182 reading manifest file 'cool_seq_tool.egg-info/SOURCES.txt' 2023-01-05T15:04:41,184 adding license file 'LICENSE' 2023-01-05T15:04:41,187 writing manifest file 'cool_seq_tool.egg-info/SOURCES.txt' 2023-01-05T15:04:41,189 copying cool_seq_tool/data/transcript_mapping.tsv -> build/lib/cool_seq_tool/data 2023-01-05T15:04:41,661 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-05T15:04:41,662 warnings.warn( 2023-01-05T15:04:41,685 installing to build/bdist.linux-armv7l/wheel 2023-01-05T15:04:41,685 running install 2023-01-05T15:04:41,710 running install_lib 2023-01-05T15:04:41,737 creating build/bdist.linux-armv7l 2023-01-05T15:04:41,738 creating build/bdist.linux-armv7l/wheel 2023-01-05T15:04:41,740 creating build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:41,740 copying build/lib/cool_seq_tool/schemas.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:41,743 copying build/lib/cool_seq_tool/main.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:41,746 copying build/lib/cool_seq_tool/cool_seq_tool.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:41,748 copying build/lib/cool_seq_tool/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:41,751 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/data 2023-01-05T15:04:41,751 copying build/lib/cool_seq_tool/data/transcript_mapping.tsv -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data 2023-01-05T15:04:42,245 copying build/lib/cool_seq_tool/data/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data 2023-01-05T15:04:42,246 copying build/lib/cool_seq_tool/data/data_downloads.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data 2023-01-05T15:04:42,248 copying build/lib/cool_seq_tool/version.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool 2023-01-05T15:04:42,250 creating build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,251 copying build/lib/cool_seq_tool/data_sources/residue_mode.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,253 copying build/lib/cool_seq_tool/data_sources/uta_database.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,256 copying build/lib/cool_seq_tool/data_sources/mane_transcript.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,259 copying build/lib/cool_seq_tool/data_sources/gene_normalizer.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,261 copying build/lib/cool_seq_tool/data_sources/__init__.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,263 copying build/lib/cool_seq_tool/data_sources/transcript_mappings.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,265 copying build/lib/cool_seq_tool/data_sources/seqrepo_access.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,267 copying build/lib/cool_seq_tool/data_sources/mane_transcript_mappings.py -> build/bdist.linux-armv7l/wheel/cool_seq_tool/data_sources 2023-01-05T15:04:42,269 running install_egg_info 2023-01-05T15:04:42,297 Copying cool_seq_tool.egg-info to build/bdist.linux-armv7l/wheel/cool_seq_tool-0.1.5-py3.9.egg-info 2023-01-05T15:04:42,309 running install_scripts 2023-01-05T15:04:42,391 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-01-05T15:04:42,395 creating build/bdist.linux-armv7l/wheel/cool_seq_tool-0.1.5.dist-info/WHEEL 2023-01-05T15:04:42,398 creating '/tmp/pip-wheel-rkavum68/cool_seq_tool-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-05T15:04:42,400 adding 'cool_seq_tool/__init__.py' 2023-01-05T15:04:42,404 adding 'cool_seq_tool/cool_seq_tool.py' 2023-01-05T15:04:42,406 adding 'cool_seq_tool/main.py' 2023-01-05T15:04:42,407 adding 'cool_seq_tool/schemas.py' 2023-01-05T15:04:42,409 adding 'cool_seq_tool/version.py' 2023-01-05T15:04:42,410 adding 'cool_seq_tool/data/__init__.py' 2023-01-05T15:04:42,411 adding 'cool_seq_tool/data/data_downloads.py' 2023-01-05T15:04:45,103 adding 'cool_seq_tool/data/transcript_mapping.tsv' 2023-01-05T15:04:45,254 adding 'cool_seq_tool/data_sources/__init__.py' 2023-01-05T15:04:45,256 adding 'cool_seq_tool/data_sources/gene_normalizer.py' 2023-01-05T15:04:45,260 adding 'cool_seq_tool/data_sources/mane_transcript.py' 2023-01-05T15:04:45,261 adding 'cool_seq_tool/data_sources/mane_transcript_mappings.py' 2023-01-05T15:04:45,263 adding 'cool_seq_tool/data_sources/residue_mode.py' 2023-01-05T15:04:45,264 adding 'cool_seq_tool/data_sources/seqrepo_access.py' 2023-01-05T15:04:45,266 adding 'cool_seq_tool/data_sources/transcript_mappings.py' 2023-01-05T15:04:45,270 adding 'cool_seq_tool/data_sources/uta_database.py' 2023-01-05T15:04:45,272 adding 'cool_seq_tool-0.1.5.dist-info/LICENSE' 2023-01-05T15:04:45,274 adding 'cool_seq_tool-0.1.5.dist-info/METADATA' 2023-01-05T15:04:45,275 adding 'cool_seq_tool-0.1.5.dist-info/WHEEL' 2023-01-05T15:04:45,276 adding 'cool_seq_tool-0.1.5.dist-info/top_level.txt' 2023-01-05T15:04:45,276 adding 'cool_seq_tool-0.1.5.dist-info/RECORD' 2023-01-05T15:04:45,339 removing build/bdist.linux-armv7l/wheel 2023-01-05T15:04:45,501 Building wheel for cool-seq-tool (setup.py): finished with status 'done' 2023-01-05T15:04:45,548 Created wheel for cool-seq-tool: filename=cool_seq_tool-0.1.5-py3-none-any.whl size=4031309 sha256=8c06d9425c581bc6b94bea9cf23a9ba058c0fa5d1999971d6c6b29797366163e 2023-01-05T15:04:45,549 Stored in directory: /tmp/pip-ephem-wheel-cache-q72hshxa/wheels/f7/7a/91/edfa2225b2ae42186d99d97e878f7ac39a861921a262a7d7f4 2023-01-05T15:04:45,564 Successfully built cool-seq-tool 2023-01-05T15:04:45,682 Removed build tracker: '/tmp/pip-build-tracker-0wk7c1pd'