2023-01-09T11:35:33,267 Created temporary directory: /tmp/pip-ephem-wheel-cache-4k80s_rg 2023-01-09T11:35:33,272 Created temporary directory: /tmp/pip-build-tracker-3mbc1c15 2023-01-09T11:35:33,272 Initialized build tracking at /tmp/pip-build-tracker-3mbc1c15 2023-01-09T11:35:33,273 Created build tracker: /tmp/pip-build-tracker-3mbc1c15 2023-01-09T11:35:33,273 Entered build tracker: /tmp/pip-build-tracker-3mbc1c15 2023-01-09T11:35:33,274 Created temporary directory: /tmp/pip-wheel-szrh1vvq 2023-01-09T11:35:33,283 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-09T11:35:33,288 Created temporary directory: /tmp/pip-ephem-wheel-cache-je098kcz 2023-01-09T11:35:33,338 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-09T11:35:33,346 2 location(s) to search for versions of biobb-structure-checking: 2023-01-09T11:35:33,346 * https://pypi.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,346 * https://www.piwheels.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,347 Fetching project page and analyzing links: https://pypi.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,348 Getting page https://pypi.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,351 Found index url https://pypi.org/simple 2023-01-09T11:35:33,588 Fetched page https://pypi.org/simple/biobb-structure-checking/ as application/vnd.pypi.simple.v1+json 2023-01-09T11:35:33,616 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/97/7b/73931348800918852f48d1e0b88da75673429f805267bcfa6e136b0896f7/biobb_structure_checking-0.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,618 Link requires a different Python (3.7.3 not in: '==3.6.*'): https://files.pythonhosted.org/packages/87/64/3b82ebc4f6bb74fcce720b885c8ad2c194c6e25cb1c9ae1d9aac7100e5c4/biobb_structure_checking-0.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,619 Skipping link: 0.0.1 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/87/64/3b82ebc4f6bb74fcce720b885c8ad2c194c6e25cb1c9ae1d9aac7100e5c4/biobb_structure_checking-0.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,619 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/39/6b/55e1c27621bfce13456eda9ee174a696da84ab5085b892fef791f217fbf3/biobb_structure_checking-1.0.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,620 Link requires a different Python (3.7.3 not in: '==3.6.*'): https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,621 Skipping link: 1.0.5 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/2f/18/132f1dfff6687115bc639ff77bdd1da0734bb2dccffa540eaaccb2c7f2ce/biobb_structure_checking-1.0.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,621 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1b/a0/4705f90f309c23f5df51bdc877610f22bc8be4c656df9bbb1555f2c94ac2/biobb_structure_checking-1.0.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,623 Link requires a different Python (3.7.3 not in: '==3.6.*'): https://files.pythonhosted.org/packages/bc/12/399938f0fdbc9442ba8b6a8c51aeaf6f273da2a0ca7fa79c4af0f2ff98b0/biobb_structure_checking-1.0.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,623 Skipping link: 1.0.6 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/bc/12/399938f0fdbc9442ba8b6a8c51aeaf6f273da2a0ca7fa79c4af0f2ff98b0/biobb_structure_checking-1.0.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,624 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/15/27/1f57bfd3399f4dad1ed0cdd688572ae523a0a418818dceeeb6cc03a042d2/biobb_structure_checking-1.0.7-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,625 Link requires a different Python (3.7.3 not in: '==3.6.*'): https://files.pythonhosted.org/packages/5d/45/753c15432088a137cfe7418e29f7d28d9e81843965916475c4daf0a7a843/biobb_structure_checking-1.0.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,625 Skipping link: 1.0.7 Requires-Python ==3.6.*: https://files.pythonhosted.org/packages/5d/45/753c15432088a137cfe7418e29f7d28d9e81843965916475c4daf0a7a843/biobb_structure_checking-1.0.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.6.*) 2023-01-09T11:35:33,626 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/17/c3/9ec35a7ecd376c6af5dcd73601487b011794c8932a9ca2fbe86acf3124dc/biobb_structure_checking-3.0.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,627 Found link https://files.pythonhosted.org/packages/fa/26/32d892050a7c7816a541d626bb5c0102af13ec6624a5a528baedaffeabfb/biobb_structure_checking-3.0.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.0.0 2023-01-09T11:35:33,628 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/63/11/c5d62e6959509d4f3d461a92c251c1b5fafd57e399b6c73fa88b0e26c0a2/biobb_structure_checking-3.0.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,629 Found link https://files.pythonhosted.org/packages/42/1a/077671581def975fdb717292dbac47a72ad20e292f88eece4cafebce2e9a/biobb_structure_checking-3.0.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.0.1 2023-01-09T11:35:33,630 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/93/15/a14cc7a8f7d40b1ba69721609481028dd6594726aebad8a6d6c94232929e/biobb_structure_checking-3.0.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,631 Found link https://files.pythonhosted.org/packages/df/39/28b3506ff5c71675d5709f21f08032aa5cbd3348d1d77a9699c9e3d940c9/biobb_structure_checking-3.0.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.0.2 2023-01-09T11:35:33,632 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/e7/18/408d43c8e46e84b65c744e7efe600090336ba5257d2ec4f6bc98b9dad680/biobb_structure_checking-3.5.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,633 Found link https://files.pythonhosted.org/packages/22/00/8481dda804f911206b521a578bce5e91d0e50fc802bb9979b83527238d49/biobb_structure_checking-3.5.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.5.0 2023-01-09T11:35:33,634 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/98/70/39ff96ffb6b4fa3ba363c93af3119de2312c9ab94558ca54e1000fc8c07d/biobb_structure_checking-3.5.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,635 Found link https://files.pythonhosted.org/packages/9d/52/34f905209407f9a6e43c472919fb1ed241d2c500a8a4f1201bd8f45449da/biobb_structure_checking-3.5.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.5.2 2023-01-09T11:35:33,636 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a5/b8/c199ea26acefce9148b2f039228a6445bfd99cbf3baa5aac5d5de76d88d2/biobb_structure_checking-3.5.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,637 Found link https://files.pythonhosted.org/packages/0a/40/352e4eef5795daea5bac5a015dec9895ae437a2cba75aed4a45e3af0ce76/biobb_structure_checking-3.5.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.5.3 2023-01-09T11:35:33,638 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/c6/02/0a7502c333f7ef180777f062b86d3802bd1b7acc0800a5be0a44cb2e1bea/biobb_structure_checking-3.7.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.5) 2023-01-09T11:35:33,639 Found link https://files.pythonhosted.org/packages/01/d5/3a6a5b347332136fa77b4e048c5ea413968e7766541a08e788616e6cc884/biobb_structure_checking-3.7.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.5), version: 3.7.0 2023-01-09T11:35:33,640 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/04/20/62c497fbd09fea7e3e17d93fac41528fa00e20b86b2a785411daed8e0d8c/biobb_structure_checking-3.7.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,641 Found link https://files.pythonhosted.org/packages/e1/0c/d85d2e256e7334fc770afe5c3d1bbbe4bd894c238debb5475a488480a71f/biobb_structure_checking-3.7.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.1 2023-01-09T11:35:33,642 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/cb/e3/36d38b81e970b30abee8aeaa2aae2b1f071efb90d266de841a4897657df9/biobb_structure_checking-3.7.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,643 Found link https://files.pythonhosted.org/packages/73/1b/6e7ac71a64653cfca7ae3b5abe552196ae2f183612ccf1e09bd6c43dffa5/biobb_structure_checking-3.7.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.2 2023-01-09T11:35:33,644 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/14/13/b86da709765601df26fa02f5544618752a63b971aa84df4f09d0645329b4/biobb_structure_checking-3.7.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,645 Found link https://files.pythonhosted.org/packages/2f/3b/6c84094f4d47284252a2b36a24edd5020c6bffe7ad6882b4bd2ad1ddc1c7/biobb_structure_checking-3.7.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.7.3 2023-01-09T11:35:33,645 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/96/b0/27baedfeb1a59b91c5e956aff43c762db0352b90ba0ad05e7fef931e945c/biobb_structure_checking-3.8.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,647 Found link https://files.pythonhosted.org/packages/77/84/b4c70b2b7a8c93eb1898599d2b61f2b00222db03cd75ca4118b709cc2873/biobb_structure_checking-3.8.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.6), version: 3.8.5 2023-01-09T11:35:33,648 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1d/c7/612a643eb7abc559d85bf1750827088b8e2fe1fbeecf4cc646c7f8f2564f/biobb_structure_checking-3.9.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,649 Found link https://files.pythonhosted.org/packages/e6/38/21bb54396edf2cb7180eb211377481094b70d61b61c0d04756d5ac4fe6f7/biobb_structure_checking-3.9.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.1 2023-01-09T11:35:33,649 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/03/24/ebf324547ec33a1816e3bb1d671551b0257610211accacd51ea4fa1f9d41/biobb_structure_checking-3.9.2-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,650 Found link https://files.pythonhosted.org/packages/24/5a/04f79bea3fd6c477e3076e70c493f0277bb2fb2dde9575d2100a7ac0c721/biobb_structure_checking-3.9.2.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.2 2023-01-09T11:35:33,650 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/64/9e/5b91df4268be5674341a25631d5f446efbcb74984d325c4b2037f6646831/biobb_structure_checking-3.9.3-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,651 Found link https://files.pythonhosted.org/packages/fb/95/41ad51225ef4f66aa2b595b1ec4923e75b2199e9a31467d8b0b7a7cf1190/biobb_structure_checking-3.9.3.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.3 2023-01-09T11:35:33,652 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/4f/e2/a82501b69d348b016609c47216476450862c41d5679a730504b768f65129/biobb_structure_checking-3.9.4-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,652 Found link https://files.pythonhosted.org/packages/4f/0b/ab4df0c146e3f235b2f39f1f3954be6ee5cd7b08ef879b744df02b2fc6f9/biobb_structure_checking-3.9.4.tar.gz (from https://pypi.org/simple/biobb-structure-checking/), version: 3.9.4 2023-01-09T11:35:33,653 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/46/ea/7f62683b9cc07e88d6d045e346411e68b77169a6657134e1929dc6066d79/biobb_structure_checking-3.9.5-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,654 Found link https://files.pythonhosted.org/packages/c8/99/054ece2e95dc0263a7ee17203cb525ae71cb8724bb301becdd4e715baa52/biobb_structure_checking-3.9.5.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.5 2023-01-09T11:35:33,655 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/1c/bd/8302371439bb13682c5672fe1ad8536ad0f2a923bd404271c7afa910f7fb/biobb_structure_checking-3.9.6-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,656 Found link https://files.pythonhosted.org/packages/bb/fe/e236e81b19172eb7829f9ae29b839c41105040be653b72daaca487d6e68a/biobb_structure_checking-3.9.6.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.6 2023-01-09T11:35:33,657 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/64/d5/237d1124d415747be48aab373413ebcfa9b0b13b7ffae5ab9f841467ad0b/biobb_structure_checking-3.9.7-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,658 Found link https://files.pythonhosted.org/packages/4a/27/b2741f68dcf6751719d17c9fdfd1cddfa3b2113a6921e92c59386404a525/biobb_structure_checking-3.9.7.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.7 2023-01-09T11:35:33,659 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/66/70/5120b3e3701cbe3e8e65d66aef5f599557394fcb0e3f55d622105ebc18e9/biobb_structure_checking-3.9.8-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,660 Found link https://files.pythonhosted.org/packages/13/ea/4d959265413c7c1ff458688a842850b0ba3f48040a4cc1f70c5c74ad391f/biobb_structure_checking-3.9.8.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.8 2023-01-09T11:35:33,661 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/3d/2b/45b5ed3345d7075efef2fcde64fc19c836a56b0d60d234419fd04720a570/biobb_structure_checking-3.9.9-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,662 Found link https://files.pythonhosted.org/packages/61/37/9b0ff6d7f2fa5f2a7e5ca2a614ade65edf33e3351c42b2d974896bd59932/biobb_structure_checking-3.9.9.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.9 2023-01-09T11:35:33,663 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/a3/43/cd861c5cc8ecc3476d8ae3e474acb8f98ab0c9da99b812d19c5451d00ccf/biobb_structure_checking-3.9.10-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,664 Found link https://files.pythonhosted.org/packages/0d/31/19dc942015efa8dadb519d1a330054864eaa9178affd67cedaaa61160016/biobb_structure_checking-3.9.10.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.10 2023-01-09T11:35:33,664 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/9e/99/6a7991ad252d275113a51e1225df5e202f3b99b4ebd86940c26d86e382d3/biobb_structure_checking-3.9.11-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,666 Found link https://files.pythonhosted.org/packages/d0/ca/93e5d1f2d75b0f99a578bc7a0bb8519dc073e2905dec5a0a6e95d7e991a4/biobb_structure_checking-3.9.11.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:==3.7.*), version: 3.9.11 2023-01-09T11:35:33,666 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/dc/66/9aee0a636ffa94d89c495468d61607790162ec26a278ec4cabb82410c93a/biobb_structure_checking-3.10.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2023-01-09T11:35:33,668 Found link https://files.pythonhosted.org/packages/0c/ad/2a27428424df13356f63f38ad70411199857e08a2e2cb1aa6e1d98d58d56/biobb_structure_checking-3.10.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.0 2023-01-09T11:35:33,668 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/2f/89/ab802a1e0ae870998435b8136529c43ca8eea9a106eacd170d547c5ccc6f/biobb_structure_checking-3.10.1-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2023-01-09T11:35:33,670 Found link https://files.pythonhosted.org/packages/a8/33/9ede62a4f16048d2a24d4261cdb6489ad653385e3ef851c9cbf904346493/biobb_structure_checking-3.10.1.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.10.1 2023-01-09T11:35:33,670 Skipping link: No binaries permitted for biobb-structure-checking: https://files.pythonhosted.org/packages/80/97/11822214f8649f0cf944468fe32461f46dc219b9a80c804cd93e2841496b/biobb_structure_checking-3.12.0-py3-none-any.whl (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2023-01-09T11:35:33,672 Found link https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz (from https://pypi.org/simple/biobb-structure-checking/) (requires-python:>=3.7), version: 3.12.0 2023-01-09T11:35:33,673 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,673 Getting page https://www.piwheels.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,675 Found index url https://www.piwheels.org/simple 2023-01-09T11:35:33,916 Fetched page https://www.piwheels.org/simple/biobb-structure-checking/ as text/html 2023-01-09T11:35:33,935 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.1-py3-none-any.whl#sha256=8edd75d0ff29bb737e8c0eb8b0d3afaa0ce321452921e584a8f29ac11910e00a (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2023-01-09T11:35:33,936 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.10.0-py3-none-any.whl#sha256=da2a762d7c3087d3dcb50581ab75dbdef6f3b7920a674fd900f210fe66305c86 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.7) 2023-01-09T11:35:33,937 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.11-py3-none-any.whl#sha256=59a99c0fa789ccb8993b3aa8b7a39783e24f49556bdb1392ba274a12a8ae06ce (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,937 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.10-py3-none-any.whl#sha256=6229a9c090a560f835fa166f7557157dc0e21d797c8cc46d6ec94d7a23256d51 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,938 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.9-py3-none-any.whl#sha256=12ec8887f6f22b9f7b89820c514231cf98909862f4f84297fa6e6bc6a045cbad (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,938 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.8-py3-none-any.whl#sha256=71299169c8ae898cf6dc19ed8043ea82995a7f7f036411121073034b07925680 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,939 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.7-py3-none-any.whl#sha256=6fafc262b410a804dfc962bf5795fe8fc3e3f6c32b2dcdb962d43ff078ab64a0 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,939 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.6-py3-none-any.whl#sha256=06d44fa470872ecb6149b0ae2f31078e42b0f3945a75f1dfee91c88823c06597 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,940 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.5-py3-none-any.whl#sha256=582d529a2c847f6c8cfc0afd2f51699bbd60bc0f1fadbfcb277dfb363253caf7 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,940 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.4-py3-none-any.whl#sha256=59e51320caa1bdc56677fb8db25e9ce9ced398c5e4b0a026617be8844df1a6d3 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,941 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.3-py3-none-any.whl#sha256=bcd1ac36892c14f7cffef48805c07dedeace4f7d94add1a5c3d57b5fc064ceaa (from https://www.piwheels.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,941 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.2-py3-none-any.whl#sha256=333b156968b057501ca2b331c021dae957bffe4a63766de01b2c69f2f6715680 (from https://www.piwheels.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,942 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.9.1-py3-none-any.whl#sha256=3e9cc73943fd2fce1e5889acfd325e4405c80017d479b9276f422c04df745f1c (from https://www.piwheels.org/simple/biobb-structure-checking/) 2023-01-09T11:35:33,942 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.8.5-py3-none-any.whl#sha256=5db5ad249dcde45660778f6b2af7511367e5d712f21a2918d0a3ef878b1ad93e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,943 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.3-py3-none-any.whl#sha256=171c66ce739cf98c9e748a32426353cff168927e4955c9a89538d2c8781be485 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,944 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.2-py3-none-any.whl#sha256=0951c702b05d2f61693b25cab0cf3b9bd46c11381048f3ad7af6c58bb7403810 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,944 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.1-py3-none-any.whl#sha256=a837ba4af81fd98a21e85719e595845d693dfee2a2513c504d243809ea163825 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.6) 2023-01-09T11:35:33,945 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.7.0-py3-none-any.whl#sha256=7c51b36c5f52e0addd64f3b7ec0c3e3f6ce43d95ae8d24d452c135e2650b7242 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:>=3.5) 2023-01-09T11:35:33,945 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.3-py3-none-any.whl#sha256=8f9443b0614b6d0c9b895612d995e36ce8d4d35a52b9de45b0587cb6007ea104 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,946 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.2-py3-none-any.whl#sha256=27db7be134a0b373dd67dacc9ae5116f2f57709945749df6a2950ea91a9c83c9 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,946 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.5.0-py3-none-any.whl#sha256=9076b15d538fdac6ade33a2a1b514b8fd1d64851e84ca2941390851dc3d7372e (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,947 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.2-py3-none-any.whl#sha256=d9c71e4c12c116a92db4e5bfc2c869ac06b270f07d10c15f86c7db1bf0510125 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,947 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.1-py3-none-any.whl#sha256=4dfd2c0acabfa01f77c89c67040ff349d90f919c38e0300b3e1f1ef4bba07b97 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,948 Skipping link: No binaries permitted for biobb-structure-checking: https://www.piwheels.org/simple/biobb-structure-checking/biobb_structure_checking-3.0.0-py3-none-any.whl#sha256=4360463771a60a95ecbb4397df8c57f7b889dda78c87d50508629149b60726e0 (from https://www.piwheels.org/simple/biobb-structure-checking/) (requires-python:==3.7.*) 2023-01-09T11:35:33,948 Skipping link: not a file: https://www.piwheels.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,949 Skipping link: not a file: https://pypi.org/simple/biobb-structure-checking/ 2023-01-09T11:35:33,991 Given no hashes to check 1 links for project 'biobb-structure-checking': discarding no candidates 2023-01-09T11:35:34,021 Collecting biobb-structure-checking==3.12.0 2023-01-09T11:35:34,026 Created temporary directory: /tmp/pip-unpack-b_qk63u2 2023-01-09T11:35:34,311 Downloading biobb_structure_checking-3.12.0.tar.gz (105 kB) 2023-01-09T11:35:34,646 Added biobb-structure-checking==3.12.0 from https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz to build tracker '/tmp/pip-build-tracker-3mbc1c15' 2023-01-09T11:35:34,649 Running setup.py (path:/tmp/pip-wheel-szrh1vvq/biobb-structure-checking_8e8395383e444d9b89cc0456b0662d50/setup.py) egg_info for package biobb-structure-checking 2023-01-09T11:35:34,650 Created temporary directory: /tmp/pip-pip-egg-info-2nohcwds 2023-01-09T11:35:34,651 Preparing metadata (setup.py): started 2023-01-09T11:35:34,653 Running command python setup.py egg_info 2023-01-09T11:35:37,481 running egg_info 2023-01-09T11:35:37,487 creating /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info 2023-01-09T11:35:37,579 writing /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/PKG-INFO 2023-01-09T11:35:37,583 writing dependency_links to /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/dependency_links.txt 2023-01-09T11:35:37,586 writing entry points to /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/entry_points.txt 2023-01-09T11:35:37,589 writing requirements to /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/requires.txt 2023-01-09T11:35:37,591 writing top-level names to /tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/top_level.txt 2023-01-09T11:35:37,593 writing manifest file '/tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/SOURCES.txt' 2023-01-09T11:35:37,883 reading manifest file '/tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/SOURCES.txt' 2023-01-09T11:35:37,887 reading manifest template 'MANIFEST.in' 2023-01-09T11:35:37,906 adding license file 'LICENSE' 2023-01-09T11:35:37,915 writing manifest file '/tmp/pip-pip-egg-info-2nohcwds/biobb_structure_checking.egg-info/SOURCES.txt' 2023-01-09T11:35:38,121 Preparing metadata (setup.py): finished with status 'done' 2023-01-09T11:35:38,134 Source in /tmp/pip-wheel-szrh1vvq/biobb-structure-checking_8e8395383e444d9b89cc0456b0662d50 has version 3.12.0, which satisfies requirement biobb-structure-checking==3.12.0 from https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz 2023-01-09T11:35:38,136 Removed biobb-structure-checking==3.12.0 from https://files.pythonhosted.org/packages/f5/c1/8fe39123366ae2b1ff9806667185da01871878a3acc419d1f02fc0713aa0/biobb_structure_checking-3.12.0.tar.gz from build tracker '/tmp/pip-build-tracker-3mbc1c15' 2023-01-09T11:35:38,151 Created temporary directory: /tmp/pip-unpack-wun637fn 2023-01-09T11:35:38,152 Building wheels for collected packages: biobb-structure-checking 2023-01-09T11:35:38,162 Created temporary directory: /tmp/pip-wheel-r8liom1r 2023-01-09T11:35:38,163 Building wheel for biobb-structure-checking (setup.py): started 2023-01-09T11:35:38,165 Destination directory: /tmp/pip-wheel-r8liom1r 2023-01-09T11:35:38,165 Running command python setup.py bdist_wheel 2023-01-09T11:35:41,069 running bdist_wheel 2023-01-09T11:35:41,937 running build 2023-01-09T11:35:41,938 running build_py 2023-01-09T11:35:42,037 creating build 2023-01-09T11:35:42,037 creating build/lib 2023-01-09T11:35:42,038 creating build/lib/biobb_structure_checking 2023-01-09T11:35:42,041 copying biobb_structure_checking/check_structure.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,045 copying biobb_structure_checking/structure_manager.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,052 copying biobb_structure_checking/constants.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,057 copying biobb_structure_checking/modeller_manager.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,061 copying biobb_structure_checking/mutation_manager.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,065 copying biobb_structure_checking/structure_checking.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,071 copying biobb_structure_checking/__init__.py -> build/lib/biobb_structure_checking 2023-01-09T11:35:42,076 creating build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,078 copying biobb_structure_checking/commands/add_hydrogen.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,083 copying biobb_structure_checking/commands/inscodes.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,087 copying biobb_structure_checking/commands/mutateside.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,091 copying biobb_structure_checking/commands/rem_hydrogen.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,094 copying biobb_structure_checking/commands/sequences.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,098 copying biobb_structure_checking/commands/amide.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,102 copying biobb_structure_checking/commands/cistransbck.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,106 copying biobb_structure_checking/commands/altloc.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,109 copying biobb_structure_checking/commands/water.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,113 copying biobb_structure_checking/commands/chiral_bck.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,117 copying biobb_structure_checking/commands/backbone.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,122 copying biobb_structure_checking/commands/getss.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,125 copying biobb_structure_checking/commands/models.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,129 copying biobb_structure_checking/commands/chiral.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,132 copying biobb_structure_checking/commands/clashes.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,136 copying biobb_structure_checking/commands/chains.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,140 copying biobb_structure_checking/commands/__init__.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,143 copying biobb_structure_checking/commands/ligands.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,146 copying biobb_structure_checking/commands/metals.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,150 copying biobb_structure_checking/commands/fixside.py -> build/lib/biobb_structure_checking/commands 2023-01-09T11:35:42,155 creating build/lib/biobb_structure_checking/libs 2023-01-09T11:35:42,157 copying biobb_structure_checking/libs/residue_lib_manager.py -> build/lib/biobb_structure_checking/libs 2023-01-09T11:35:42,161 copying biobb_structure_checking/libs/data_lib_manager.py -> build/lib/biobb_structure_checking/libs 2023-01-09T11:35:42,165 copying biobb_structure_checking/libs/__init__.py -> build/lib/biobb_structure_checking/libs 2023-01-09T11:35:42,169 creating build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,171 copying biobb_structure_checking/io/bare_builder.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,175 copying biobb_structure_checking/io/json_writer.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,178 copying biobb_structure_checking/io/PDBIO_extended.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,182 copying biobb_structure_checking/io/mmb_server.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,185 copying biobb_structure_checking/io/__init__.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,188 copying biobb_structure_checking/io/param_input.py -> build/lib/biobb_structure_checking/io 2023-01-09T11:35:42,194 creating build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,195 copying biobb_structure_checking/modelling/residue_set.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,199 copying biobb_structure_checking/modelling/structuredata.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,208 copying biobb_structure_checking/modelling/utils.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,214 copying biobb_structure_checking/modelling/chainsdata.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,219 copying biobb_structure_checking/modelling/modelsdata.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,222 copying biobb_structure_checking/modelling/sequencedata.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,227 copying biobb_structure_checking/modelling/__init__.py -> build/lib/biobb_structure_checking/modelling 2023-01-09T11:35:42,229 running egg_info 2023-01-09T11:35:42,438 writing biobb_structure_checking.egg-info/PKG-INFO 2023-01-09T11:35:42,442 writing dependency_links to biobb_structure_checking.egg-info/dependency_links.txt 2023-01-09T11:35:42,445 writing entry points to biobb_structure_checking.egg-info/entry_points.txt 2023-01-09T11:35:42,448 writing requirements to biobb_structure_checking.egg-info/requires.txt 2023-01-09T11:35:42,450 writing top-level names to biobb_structure_checking.egg-info/top_level.txt 2023-01-09T11:35:42,561 reading manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2023-01-09T11:35:42,568 reading manifest template 'MANIFEST.in' 2023-01-09T11:35:42,585 adding license file 'LICENSE' 2023-01-09T11:35:42,597 writing manifest file 'biobb_structure_checking.egg-info/SOURCES.txt' 2023-01-09T11:35:42,602 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'biobb_structure_checking.dat' as data is deprecated, please list it in `packages`. 2023-01-09T11:35:42,603 !! 2023-01-09T11:35:42,604 ############################ 2023-01-09T11:35:42,604 # Package would be ignored # 2023-01-09T11:35:42,604 ############################ 2023-01-09T11:35:42,605 Python recognizes 'biobb_structure_checking.dat' as an importable package, 2023-01-09T11:35:42,605 but it is not listed in the `packages` configuration of setuptools. 2023-01-09T11:35:42,605 'biobb_structure_checking.dat' has been automatically added to the distribution only 2023-01-09T11:35:42,606 because it may contain data files, but this behavior is likely to change 2023-01-09T11:35:42,606 in future versions of setuptools (and therefore is considered deprecated). 2023-01-09T11:35:42,607 Please make sure that 'biobb_structure_checking.dat' is included as a package by using 2023-01-09T11:35:42,607 the `packages` configuration field or the proper discovery methods 2023-01-09T11:35:42,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-09T11:35:42,608 instead of `find_packages(...)`/`find:`). 2023-01-09T11:35:42,608 You can read more about "package discovery" and "data files" on setuptools 2023-01-09T11:35:42,608 documentation page. 2023-01-09T11:35:42,609 !! 2023-01-09T11:35:42,610 check.warn(importable) 2023-01-09T11:35:42,642 creating build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,644 copying biobb_structure_checking/dat/ADT_prm.json -> build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,648 copying biobb_structure_checking/dat/CMIP_prm.json -> build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,651 copying biobb_structure_checking/dat/all_residues.in -> build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,687 copying biobb_structure_checking/dat/commands.hlp -> build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,691 copying biobb_structure_checking/dat/data_lib.json -> build/lib/biobb_structure_checking/dat 2023-01-09T11:35:42,807 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-09T11:35:42,808 setuptools.SetuptoolsDeprecationWarning, 2023-01-09T11:35:42,947 installing to build/bdist.linux-armv7l/wheel 2023-01-09T11:35:42,947 running install 2023-01-09T11:35:43,010 running install_lib 2023-01-09T11:35:43,107 creating build/bdist.linux-armv7l 2023-01-09T11:35:43,108 creating build/bdist.linux-armv7l/wheel 2023-01-09T11:35:43,111 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,113 copying build/lib/biobb_structure_checking/check_structure.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,117 copying build/lib/biobb_structure_checking/structure_manager.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,125 copying build/lib/biobb_structure_checking/constants.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,130 copying build/lib/biobb_structure_checking/modeller_manager.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,134 copying build/lib/biobb_structure_checking/mutation_manager.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,140 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,141 copying build/lib/biobb_structure_checking/commands/add_hydrogen.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,146 copying build/lib/biobb_structure_checking/commands/inscodes.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,150 copying build/lib/biobb_structure_checking/commands/mutateside.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,153 copying build/lib/biobb_structure_checking/commands/rem_hydrogen.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,156 copying build/lib/biobb_structure_checking/commands/sequences.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,160 copying build/lib/biobb_structure_checking/commands/amide.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,163 copying build/lib/biobb_structure_checking/commands/cistransbck.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,167 copying build/lib/biobb_structure_checking/commands/altloc.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,171 copying build/lib/biobb_structure_checking/commands/water.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,174 copying build/lib/biobb_structure_checking/commands/chiral_bck.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,178 copying build/lib/biobb_structure_checking/commands/backbone.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,182 copying build/lib/biobb_structure_checking/commands/getss.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,186 copying build/lib/biobb_structure_checking/commands/models.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,189 copying build/lib/biobb_structure_checking/commands/chiral.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,193 copying build/lib/biobb_structure_checking/commands/clashes.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,196 copying build/lib/biobb_structure_checking/commands/chains.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,200 copying build/lib/biobb_structure_checking/commands/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,203 copying build/lib/biobb_structure_checking/commands/ligands.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,207 copying build/lib/biobb_structure_checking/commands/metals.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,210 copying build/lib/biobb_structure_checking/commands/fixside.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/commands 2023-01-09T11:35:43,214 copying build/lib/biobb_structure_checking/structure_checking.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,221 copying build/lib/biobb_structure_checking/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking 2023-01-09T11:35:43,225 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,226 copying build/lib/biobb_structure_checking/dat/CMIP_prm.json -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,230 copying build/lib/biobb_structure_checking/dat/all_residues.in -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,251 copying build/lib/biobb_structure_checking/dat/commands.hlp -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,255 copying build/lib/biobb_structure_checking/dat/data_lib.json -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,264 copying build/lib/biobb_structure_checking/dat/ADT_prm.json -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/dat 2023-01-09T11:35:43,269 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2023-01-09T11:35:43,271 copying build/lib/biobb_structure_checking/libs/residue_lib_manager.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2023-01-09T11:35:43,275 copying build/lib/biobb_structure_checking/libs/data_lib_manager.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2023-01-09T11:35:43,280 copying build/lib/biobb_structure_checking/libs/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/libs 2023-01-09T11:35:43,285 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,287 copying build/lib/biobb_structure_checking/io/bare_builder.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,291 copying build/lib/biobb_structure_checking/io/json_writer.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,295 copying build/lib/biobb_structure_checking/io/PDBIO_extended.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,299 copying build/lib/biobb_structure_checking/io/mmb_server.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,303 copying build/lib/biobb_structure_checking/io/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,307 copying build/lib/biobb_structure_checking/io/param_input.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/io 2023-01-09T11:35:43,313 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,315 copying build/lib/biobb_structure_checking/modelling/residue_set.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,320 copying build/lib/biobb_structure_checking/modelling/structuredata.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,324 copying build/lib/biobb_structure_checking/modelling/utils.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,331 copying build/lib/biobb_structure_checking/modelling/chainsdata.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,336 copying build/lib/biobb_structure_checking/modelling/modelsdata.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,340 copying build/lib/biobb_structure_checking/modelling/sequencedata.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,344 copying build/lib/biobb_structure_checking/modelling/__init__.py -> build/bdist.linux-armv7l/wheel/biobb_structure_checking/modelling 2023-01-09T11:35:43,347 running install_egg_info 2023-01-09T11:35:43,452 Copying biobb_structure_checking.egg-info to build/bdist.linux-armv7l/wheel/biobb_structure_checking-3.12.0-py3.7.egg-info 2023-01-09T11:35:43,475 running install_scripts 2023-01-09T11:35:43,623 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-01-09T11:35:43,633 creating build/bdist.linux-armv7l/wheel/biobb_structure_checking-3.12.0.dist-info/WHEEL 2023-01-09T11:35:43,637 creating '/tmp/pip-wheel-r8liom1r/biobb_structure_checking-3.12.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-09T11:35:43,642 adding 'biobb_structure_checking/__init__.py' 2023-01-09T11:35:43,644 adding 'biobb_structure_checking/check_structure.py' 2023-01-09T11:35:43,650 adding 'biobb_structure_checking/constants.py' 2023-01-09T11:35:43,654 adding 'biobb_structure_checking/modeller_manager.py' 2023-01-09T11:35:43,657 adding 'biobb_structure_checking/mutation_manager.py' 2023-01-09T11:35:43,664 adding 'biobb_structure_checking/structure_checking.py' 2023-01-09T11:35:43,682 adding 'biobb_structure_checking/structure_manager.py' 2023-01-09T11:35:43,688 adding 'biobb_structure_checking/commands/__init__.py' 2023-01-09T11:35:43,691 adding 'biobb_structure_checking/commands/add_hydrogen.py' 2023-01-09T11:35:43,694 adding 'biobb_structure_checking/commands/altloc.py' 2023-01-09T11:35:43,697 adding 'biobb_structure_checking/commands/amide.py' 2023-01-09T11:35:43,701 adding 'biobb_structure_checking/commands/backbone.py' 2023-01-09T11:35:43,704 adding 'biobb_structure_checking/commands/chains.py' 2023-01-09T11:35:43,707 adding 'biobb_structure_checking/commands/chiral.py' 2023-01-09T11:35:43,709 adding 'biobb_structure_checking/commands/chiral_bck.py' 2023-01-09T11:35:43,712 adding 'biobb_structure_checking/commands/cistransbck.py' 2023-01-09T11:35:43,714 adding 'biobb_structure_checking/commands/clashes.py' 2023-01-09T11:35:43,716 adding 'biobb_structure_checking/commands/fixside.py' 2023-01-09T11:35:43,719 adding 'biobb_structure_checking/commands/getss.py' 2023-01-09T11:35:43,721 adding 'biobb_structure_checking/commands/inscodes.py' 2023-01-09T11:35:43,724 adding 'biobb_structure_checking/commands/ligands.py' 2023-01-09T11:35:43,727 adding 'biobb_structure_checking/commands/metals.py' 2023-01-09T11:35:43,729 adding 'biobb_structure_checking/commands/models.py' 2023-01-09T11:35:43,732 adding 'biobb_structure_checking/commands/mutateside.py' 2023-01-09T11:35:43,734 adding 'biobb_structure_checking/commands/rem_hydrogen.py' 2023-01-09T11:35:43,737 adding 'biobb_structure_checking/commands/sequences.py' 2023-01-09T11:35:43,739 adding 'biobb_structure_checking/commands/water.py' 2023-01-09T11:35:43,743 adding 'biobb_structure_checking/dat/ADT_prm.json' 2023-01-09T11:35:43,745 adding 'biobb_structure_checking/dat/CMIP_prm.json' 2023-01-09T11:35:43,791 adding 'biobb_structure_checking/dat/all_residues.in' 2023-01-09T11:35:43,798 adding 'biobb_structure_checking/dat/commands.hlp' 2023-01-09T11:35:43,810 adding 'biobb_structure_checking/dat/data_lib.json' 2023-01-09T11:35:43,816 adding 'biobb_structure_checking/io/PDBIO_extended.py' 2023-01-09T11:35:43,818 adding 'biobb_structure_checking/io/__init__.py' 2023-01-09T11:35:43,820 adding 'biobb_structure_checking/io/bare_builder.py' 2023-01-09T11:35:43,823 adding 'biobb_structure_checking/io/json_writer.py' 2023-01-09T11:35:43,826 adding 'biobb_structure_checking/io/mmb_server.py' 2023-01-09T11:35:43,829 adding 'biobb_structure_checking/io/param_input.py' 2023-01-09T11:35:43,833 adding 'biobb_structure_checking/libs/__init__.py' 2023-01-09T11:35:43,836 adding 'biobb_structure_checking/libs/data_lib_manager.py' 2023-01-09T11:35:43,838 adding 'biobb_structure_checking/libs/residue_lib_manager.py' 2023-01-09T11:35:43,842 adding 'biobb_structure_checking/modelling/__init__.py' 2023-01-09T11:35:43,846 adding 'biobb_structure_checking/modelling/chainsdata.py' 2023-01-09T11:35:43,849 adding 'biobb_structure_checking/modelling/modelsdata.py' 2023-01-09T11:35:43,852 adding 'biobb_structure_checking/modelling/residue_set.py' 2023-01-09T11:35:43,857 adding 'biobb_structure_checking/modelling/sequencedata.py' 2023-01-09T11:35:43,861 adding 'biobb_structure_checking/modelling/structuredata.py' 2023-01-09T11:35:43,871 adding 'biobb_structure_checking/modelling/utils.py' 2023-01-09T11:35:43,879 adding 'biobb_structure_checking-3.12.0.dist-info/LICENSE' 2023-01-09T11:35:43,881 adding 'biobb_structure_checking-3.12.0.dist-info/METADATA' 2023-01-09T11:35:43,883 adding 'biobb_structure_checking-3.12.0.dist-info/WHEEL' 2023-01-09T11:35:43,885 adding 'biobb_structure_checking-3.12.0.dist-info/entry_points.txt' 2023-01-09T11:35:43,887 adding 'biobb_structure_checking-3.12.0.dist-info/top_level.txt' 2023-01-09T11:35:43,889 adding 'biobb_structure_checking-3.12.0.dist-info/RECORD' 2023-01-09T11:35:43,897 removing build/bdist.linux-armv7l/wheel 2023-01-09T11:35:44,173 Building wheel for biobb-structure-checking (setup.py): finished with status 'done' 2023-01-09T11:35:44,185 Created wheel for biobb-structure-checking: filename=biobb_structure_checking-3.12.0-py3-none-any.whl size=125117 sha256=3205b198d75f26e80e2fb59bedcfb9f1edfabcc337b5ab16a9261107e6a25a9e 2023-01-09T11:35:44,187 Stored in directory: /tmp/pip-ephem-wheel-cache-je098kcz/wheels/ab/42/0d/cd1a689822a359412b1c31e2ffb4a200e252244e10ee847098 2023-01-09T11:35:44,218 Successfully built biobb-structure-checking 2023-01-09T11:35:44,235 Removed build tracker: '/tmp/pip-build-tracker-3mbc1c15'