2023-01-09T12:53:07,717 Created temporary directory: /tmp/pip-ephem-wheel-cache-kz73u3kd
2023-01-09T12:53:07,719 Created temporary directory: /tmp/pip-build-tracker-b0ddpnc4
2023-01-09T12:53:07,719 Initialized build tracking at /tmp/pip-build-tracker-b0ddpnc4
2023-01-09T12:53:07,719 Created build tracker: /tmp/pip-build-tracker-b0ddpnc4
2023-01-09T12:53:07,720 Entered build tracker: /tmp/pip-build-tracker-b0ddpnc4
2023-01-09T12:53:07,720 Created temporary directory: /tmp/pip-wheel-jk6n_fuj
2023-01-09T12:53:07,723 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-09T12:53:07,726 Created temporary directory: /tmp/pip-ephem-wheel-cache-m0mlcrzi
2023-01-09T12:53:07,753 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-09T12:53:07,756 2 location(s) to search for versions of scipion-em-tomo3d:
2023-01-09T12:53:07,756 * https://pypi.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,756 * https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,757 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,757 Getting page https://pypi.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,758 Found index url https://pypi.org/simple
2023-01-09T12:53:07,811 Fetched page https://pypi.org/simple/scipion-em-tomo3d/ as application/vnd.pypi.simple.v1+json
2023-01-09T12:53:07,812   Found link https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz (from https://pypi.org/simple/scipion-em-tomo3d/), version: 3.1.0
2023-01-09T12:53:07,812   Skipping link: No binaries permitted for scipion-em-tomo3d: https://files.pythonhosted.org/packages/cb/5b/aac5f9a318fe6bbb63e6ca8afd02528b2982f008a87129feefed6409bc31/scipion_em_tomo3d-3.1.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em-tomo3d/)
2023-01-09T12:53:07,813 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,813 Getting page https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,814 Found index url https://www.piwheels.org/simple
2023-01-09T12:53:07,976 Fetched page https://www.piwheels.org/simple/scipion-em-tomo3d/ as text/html
2023-01-09T12:53:07,977 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,977 Skipping link: not a file: https://pypi.org/simple/scipion-em-tomo3d/
2023-01-09T12:53:07,995 Given no hashes to check 1 links for project 'scipion-em-tomo3d': discarding no candidates
2023-01-09T12:53:08,012 Collecting scipion-em-tomo3d==3.1.0
2023-01-09T12:53:08,014   Created temporary directory: /tmp/pip-unpack-nrfl82g5
2023-01-09T12:53:08,061   Downloading scipion-em-tomo3d-3.1.0.tar.gz (27 kB)
2023-01-09T12:53:08,138   Added scipion-em-tomo3d==3.1.0 from https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-b0ddpnc4'
2023-01-09T12:53:08,140   Running setup.py (path:/tmp/pip-wheel-jk6n_fuj/scipion-em-tomo3d_0410a0b5bf1c4b78a74f2b0cf6b9a1ed/setup.py) egg_info for package scipion-em-tomo3d
2023-01-09T12:53:08,141   Created temporary directory: /tmp/pip-pip-egg-info-nrv49i2x
2023-01-09T12:53:08,141   Preparing metadata (setup.py): started
2023-01-09T12:53:08,142   Running command python setup.py egg_info
2023-01-09T12:53:09,072   Traceback (most recent call last):
2023-01-09T12:53:09,072     File "<string>", line 2, in <module>
2023-01-09T12:53:09,073     File "<pip-setuptools-caller>", line 34, in <module>
2023-01-09T12:53:09,073     File "/tmp/pip-wheel-jk6n_fuj/scipion-em-tomo3d_0410a0b5bf1c4b78a74f2b0cf6b9a1ed/setup.py", line 13, in <module>
2023-01-09T12:53:09,073       from tomo3d import __version__
2023-01-09T12:53:09,073     File "/tmp/pip-wheel-jk6n_fuj/scipion-em-tomo3d_0410a0b5bf1c4b78a74f2b0cf6b9a1ed/tomo3d/__init__.py", line 31, in <module>
2023-01-09T12:53:09,073       import pwem
2023-01-09T12:53:09,074   ModuleNotFoundError: No module named 'pwem'
2023-01-09T12:53:09,157   ERROR: [present-rich] python setup.py egg_info exited with 1
2023-01-09T12:53:09,174   [bold magenta]full command[/]: [blue]/usr/bin/python3 -c '
2023-01-09T12:53:09,174   exec(compile('"'"''"'"''"'"'
2023-01-09T12:53:09,174   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2023-01-09T12:53:09,174   #
2023-01-09T12:53:09,174   # - It imports setuptools before invoking setup.py, to enable projects that directly
2023-01-09T12:53:09,174   #   import from `distutils.core` to work with newer packaging standards.
2023-01-09T12:53:09,174   # - It provides a clear error message when setuptools is not installed.
2023-01-09T12:53:09,174   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2023-01-09T12:53:09,174   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2023-01-09T12:53:09,174   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2023-01-09T12:53:09,174   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2023-01-09T12:53:09,174   import os, sys, tokenize
2023-01-09T12:53:09,174   
2023-01-09T12:53:09,174   try:
2023-01-09T12:53:09,174       import setuptools
2023-01-09T12:53:09,174   except ImportError as error:
2023-01-09T12:53:09,174       print(
2023-01-09T12:53:09,174           "ERROR: Can not execute `setup.py` since setuptools is not available in "
2023-01-09T12:53:09,174           "the build environment.",
2023-01-09T12:53:09,174           file=sys.stderr,
2023-01-09T12:53:09,174       )
2023-01-09T12:53:09,174       sys.exit(1)
2023-01-09T12:53:09,174   
2023-01-09T12:53:09,174   __file__ = %r
2023-01-09T12:53:09,174   sys.argv[0] = __file__
2023-01-09T12:53:09,174   
2023-01-09T12:53:09,174   if os.path.exists(__file__):
2023-01-09T12:53:09,174       filename = __file__
2023-01-09T12:53:09,174       with tokenize.open(__file__) as f:
2023-01-09T12:53:09,174           setup_py_code = f.read()
2023-01-09T12:53:09,174   else:
2023-01-09T12:53:09,174       filename = "<auto-generated setuptools caller>"
2023-01-09T12:53:09,174       setup_py_code = "from setuptools import setup; setup()"
2023-01-09T12:53:09,174   
2023-01-09T12:53:09,174   exec(compile(setup_py_code, filename, "exec"))
2023-01-09T12:53:09,174   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-jk6n_fuj/scipion-em-tomo3d_0410a0b5bf1c4b78a74f2b0cf6b9a1ed/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-nrv49i2x[/]
2023-01-09T12:53:09,175   [bold magenta]cwd[/]: /tmp/pip-wheel-jk6n_fuj/scipion-em-tomo3d_0410a0b5bf1c4b78a74f2b0cf6b9a1ed/
2023-01-09T12:53:09,175   Preparing metadata (setup.py): finished with status 'error'
2023-01-09T12:53:09,176 ERROR: [present-rich] metadata generation failed
2023-01-09T12:53:09,182 Exception information:
2023-01-09T12:53:09,182 Traceback (most recent call last):
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata
2023-01-09T12:53:09,182     call_subprocess(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess
2023-01-09T12:53:09,182     raise error
2023-01-09T12:53:09,182 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1
2023-01-09T12:53:09,182 
2023-01-09T12:53:09,182 The above exception was the direct cause of the following exception:
2023-01-09T12:53:09,182 
2023-01-09T12:53:09,182 Traceback (most recent call last):
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper
2023-01-09T12:53:09,182     status = run_func(*args)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper
2023-01-09T12:53:09,182     return func(self, options, args)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run
2023-01-09T12:53:09,182     requirement_set = resolver.resolve(reqs, check_supported_wheels=True)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve
2023-01-09T12:53:09,182     result = self._result = resolver.resolve(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve
2023-01-09T12:53:09,182     state = resolution.resolve(requirements, max_rounds=max_rounds)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve
2023-01-09T12:53:09,182     self._add_to_criteria(self.state.criteria, r, parent=None)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria
2023-01-09T12:53:09,182     if not criterion.candidates:
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__
2023-01-09T12:53:09,182     return bool(self._sequence)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__
2023-01-09T12:53:09,182     return any(self)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in <genexpr>
2023-01-09T12:53:09,182     return (c for c in iterator if id(c) not in self._incompatible_ids)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built
2023-01-09T12:53:09,182     candidate = func()
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link
2023-01-09T12:53:09,182     self._link_candidate_cache[link] = LinkCandidate(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__
2023-01-09T12:53:09,182     super().__init__(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__
2023-01-09T12:53:09,182     self.dist = self._prepare()
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare
2023-01-09T12:53:09,182     dist = self._prepare_distribution()
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution
2023-01-09T12:53:09,182     return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement
2023-01-09T12:53:09,182     return self._prepare_linked_requirement(req, parallel_builds)
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement
2023-01-09T12:53:09,182     dist = _get_prepared_distribution(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution
2023-01-09T12:53:09,182     abstract_dist.prepare_distribution_metadata(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata
2023-01-09T12:53:09,182     self.req.prepare_metadata()
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 541, in prepare_metadata
2023-01-09T12:53:09,182     self.metadata_directory = generate_metadata_legacy(
2023-01-09T12:53:09,182   File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata
2023-01-09T12:53:09,182     raise MetadataGenerationFailed(package_details=details) from error
2023-01-09T12:53:09,182 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed
2023-01-09T12:53:09,193 Removed scipion-em-tomo3d==3.1.0 from https://files.pythonhosted.org/packages/6e/7e/a68dc39919161191c35e9bcec3475f69740f49f8f8138499ccfddf0f5f0b/scipion-em-tomo3d-3.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-b0ddpnc4'
2023-01-09T12:53:09,193 Removed build tracker: '/tmp/pip-build-tracker-b0ddpnc4'