2023-01-10T15:40:13,208 Created temporary directory: /tmp/pip-ephem-wheel-cache-68ny_ubf 2023-01-10T15:40:13,213 Created temporary directory: /tmp/pip-build-tracker-do6330gh 2023-01-10T15:40:13,213 Initialized build tracking at /tmp/pip-build-tracker-do6330gh 2023-01-10T15:40:13,214 Created build tracker: /tmp/pip-build-tracker-do6330gh 2023-01-10T15:40:13,214 Entered build tracker: /tmp/pip-build-tracker-do6330gh 2023-01-10T15:40:13,215 Created temporary directory: /tmp/pip-wheel-h6f273lf 2023-01-10T15:40:13,223 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-10T15:40:13,228 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ayvwwn3 2023-01-10T15:40:13,279 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-10T15:40:13,287 2 location(s) to search for versions of scaffoldgraphnew: 2023-01-10T15:40:13,287 * https://pypi.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,287 * https://www.piwheels.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,288 Fetching project page and analyzing links: https://pypi.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,289 Getting page https://pypi.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,292 Found index url https://pypi.org/simple 2023-01-10T15:40:13,706 Fetched page https://pypi.org/simple/scaffoldgraphnew/ as application/vnd.pypi.simple.v1+json 2023-01-10T15:40:13,711 Found link https://files.pythonhosted.org/packages/73/e9/8b1885de9752f3e31a9eab360b95faf1e87e0732dacb6700c4e79cc90103/ScaffoldGraphNew-1.1.2.tar.gz (from https://pypi.org/simple/scaffoldgraphnew/) (requires-python:>=3.6), version: 1.1.2 2023-01-10T15:40:13,712 Found link https://files.pythonhosted.org/packages/18/49/1f9767c8132abbfd7735a72ddfc11cb3562a1d28dfb52dc798a50dabd466/ScaffoldGraphNew-1.1.3.tar.gz (from https://pypi.org/simple/scaffoldgraphnew/) (requires-python:>=3.6), version: 1.1.3 2023-01-10T15:40:13,714 Found link https://files.pythonhosted.org/packages/12/02/aef430431b13db6ce49ea7c569a19ed9d3a2147c382f7a5eac9866687da8/ScaffoldGraphNew-1.1.4.tar.gz (from https://pypi.org/simple/scaffoldgraphnew/) (requires-python:>=3.6), version: 1.1.4 2023-01-10T15:40:13,715 Found link https://files.pythonhosted.org/packages/21/95/270bca8d3adca96850272d05aa78ab17fcb8ebf18f47a4e9a9fa88fba8cc/ScaffoldGraphNew-1.1.5.tar.gz (from https://pypi.org/simple/scaffoldgraphnew/) (requires-python:>=3.6), version: 1.1.5 2023-01-10T15:40:13,716 Fetching project page and analyzing links: https://www.piwheels.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,716 Getting page https://www.piwheels.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,719 Found index url https://www.piwheels.org/simple 2023-01-10T15:40:13,947 Fetched page https://www.piwheels.org/simple/scaffoldgraphnew/ as text/html 2023-01-10T15:40:13,952 Skipping link: No binaries permitted for scaffoldgraphnew: https://www.piwheels.org/simple/scaffoldgraphnew/ScaffoldGraphNew-1.1.4-py3-none-any.whl#sha256=9ee343200d563923aa69646b8eb2f2fcb86913b544aaa9704a6369f6695bc11a (from https://www.piwheels.org/simple/scaffoldgraphnew/) (requires-python:>=3.6) 2023-01-10T15:40:13,953 Skipping link: No binaries permitted for scaffoldgraphnew: https://www.piwheels.org/simple/scaffoldgraphnew/ScaffoldGraphNew-1.1.3-py3-none-any.whl#sha256=66b56c3357972c3275b0d0407079b1a78d5d34b119bd5c006224af9e05e7cec1 (from https://www.piwheels.org/simple/scaffoldgraphnew/) (requires-python:>=3.6) 2023-01-10T15:40:13,953 Skipping link: No binaries permitted for scaffoldgraphnew: https://www.piwheels.org/simple/scaffoldgraphnew/ScaffoldGraphNew-1.1.2-py3-none-any.whl#sha256=86198b57703761cd8a2ef04f2ae346c634ac1f13572d590a8bfb1869519d3d12 (from https://www.piwheels.org/simple/scaffoldgraphnew/) (requires-python:>=3.6) 2023-01-10T15:40:13,954 Skipping link: not a file: https://www.piwheels.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,955 Skipping link: not a file: https://pypi.org/simple/scaffoldgraphnew/ 2023-01-10T15:40:13,991 Given no hashes to check 1 links for project 'scaffoldgraphnew': discarding no candidates 2023-01-10T15:40:14,025 Collecting scaffoldgraphnew==1.1.5 2023-01-10T15:40:14,029 Created temporary directory: /tmp/pip-unpack-tz19ttu4 2023-01-10T15:40:14,289 Downloading ScaffoldGraphNew-1.1.5.tar.gz (135 kB) 2023-01-10T15:40:14,891 Added scaffoldgraphnew==1.1.5 from https://files.pythonhosted.org/packages/21/95/270bca8d3adca96850272d05aa78ab17fcb8ebf18f47a4e9a9fa88fba8cc/ScaffoldGraphNew-1.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-do6330gh' 2023-01-10T15:40:14,894 Running setup.py (path:/tmp/pip-wheel-h6f273lf/scaffoldgraphnew_1795607fae58473593ff2cde3ae24332/setup.py) egg_info for package scaffoldgraphnew 2023-01-10T15:40:14,896 Created temporary directory: /tmp/pip-pip-egg-info-qqc2_9sl 2023-01-10T15:40:14,896 Preparing metadata (setup.py): started 2023-01-10T15:40:14,898 Running command python setup.py egg_info 2023-01-10T15:40:22,753 running egg_info 2023-01-10T15:40:22,757 creating /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info 2023-01-10T15:40:22,823 writing /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/PKG-INFO 2023-01-10T15:40:22,829 writing dependency_links to /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/dependency_links.txt 2023-01-10T15:40:22,832 writing entry points to /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/entry_points.txt 2023-01-10T15:40:22,835 writing requirements to /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/requires.txt 2023-01-10T15:40:22,837 writing top-level names to /tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/top_level.txt 2023-01-10T15:40:22,840 writing manifest file '/tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/SOURCES.txt' 2023-01-10T15:40:23,094 reading manifest file '/tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/SOURCES.txt' 2023-01-10T15:40:23,097 reading manifest template 'MANIFEST.in' 2023-01-10T15:40:23,139 adding license file 'LICENSE' 2023-01-10T15:40:23,155 writing manifest file '/tmp/pip-pip-egg-info-qqc2_9sl/ScaffoldGraphNew.egg-info/SOURCES.txt' 2023-01-10T15:40:23,157 /usr/local/lib/python3.7/dist-packages/setuptools/version.py:1: UserWarning: Module io was already imported from /usr/lib/python3.7/io.py, but /tmp/pip-wheel-h6f273lf/scaffoldgraphnew_1795607fae58473593ff2cde3ae24332 is being added to sys.path 2023-01-10T15:40:23,158 import pkg_resources 2023-01-10T15:40:23,158 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-01-10T15:40:23,159 % (opt, underscore_opt) 2023-01-10T15:40:23,159 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2023-01-10T15:40:23,160 SetuptoolsDeprecationWarning, 2023-01-10T15:40:23,366 Preparing metadata (setup.py): finished with status 'done' 2023-01-10T15:40:23,383 Source in /tmp/pip-wheel-h6f273lf/scaffoldgraphnew_1795607fae58473593ff2cde3ae24332 has version 1.1.5, which satisfies requirement scaffoldgraphnew==1.1.5 from https://files.pythonhosted.org/packages/21/95/270bca8d3adca96850272d05aa78ab17fcb8ebf18f47a4e9a9fa88fba8cc/ScaffoldGraphNew-1.1.5.tar.gz 2023-01-10T15:40:23,384 Removed scaffoldgraphnew==1.1.5 from https://files.pythonhosted.org/packages/21/95/270bca8d3adca96850272d05aa78ab17fcb8ebf18f47a4e9a9fa88fba8cc/ScaffoldGraphNew-1.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-do6330gh' 2023-01-10T15:40:23,403 Created temporary directory: /tmp/pip-unpack-706gqp4_ 2023-01-10T15:40:23,404 Building wheels for collected packages: scaffoldgraphnew 2023-01-10T15:40:23,413 Created temporary directory: /tmp/pip-wheel-kuh__nvn 2023-01-10T15:40:23,414 Building wheel for scaffoldgraphnew (setup.py): started 2023-01-10T15:40:23,416 Destination directory: /tmp/pip-wheel-kuh__nvn 2023-01-10T15:40:23,416 Running command python setup.py bdist_wheel 2023-01-10T15:40:24,680 /usr/local/lib/python3.7/dist-packages/setuptools/version.py:1: UserWarning: Module io was already imported from /usr/lib/python3.7/io.py, but /tmp/pip-wheel-h6f273lf/scaffoldgraphnew_1795607fae58473593ff2cde3ae24332 is being added to sys.path 2023-01-10T15:40:24,681 import pkg_resources 2023-01-10T15:40:25,537 /usr/local/lib/python3.7/dist-packages/setuptools/dist.py:774: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead 2023-01-10T15:40:25,538 % (opt, underscore_opt) 2023-01-10T15:40:25,840 /usr/local/lib/python3.7/dist-packages/setuptools/installer.py:30: SetuptoolsDeprecationWarning: setuptools.installer is deprecated. Requirements should be satisfied by a PEP 517 installer. 2023-01-10T15:40:25,841 SetuptoolsDeprecationWarning, 2023-01-10T15:40:26,539 running bdist_wheel 2023-01-10T15:40:27,356 running build 2023-01-10T15:40:27,357 running build_py 2023-01-10T15:40:27,429 creating build 2023-01-10T15:40:27,430 creating build/lib 2023-01-10T15:40:27,431 creating build/lib/scaffoldgraphnew 2023-01-10T15:40:27,433 copying scaffoldgraphnew/__init__.py -> build/lib/scaffoldgraphnew 2023-01-10T15:40:27,437 copying scaffoldgraphnew/network.py -> build/lib/scaffoldgraphnew 2023-01-10T15:40:27,440 copying scaffoldgraphnew/tree.py -> build/lib/scaffoldgraphnew 2023-01-10T15:40:27,446 creating build/lib/utils 2023-01-10T15:40:27,447 copying utils/misc.py -> build/lib/utils 2023-01-10T15:40:27,451 copying utils/__init__.py -> build/lib/utils 2023-01-10T15:40:27,454 copying utils/cache.py -> build/lib/utils 2023-01-10T15:40:27,457 copying utils/bipartite.py -> build/lib/utils 2023-01-10T15:40:27,460 copying utils/logging.py -> build/lib/utils 2023-01-10T15:40:27,463 copying utils/aggregate.py -> build/lib/utils 2023-01-10T15:40:27,468 creating build/lib/analysis 2023-01-10T15:40:27,469 copying analysis/enrichment.py -> build/lib/analysis 2023-01-10T15:40:27,474 copying analysis/__init__.py -> build/lib/analysis 2023-01-10T15:40:27,477 copying analysis/representation.py -> build/lib/analysis 2023-01-10T15:40:27,481 copying analysis/general.py -> build/lib/analysis 2023-01-10T15:40:27,484 copying analysis/diversity.py -> build/lib/analysis 2023-01-10T15:40:27,489 creating build/lib/scripts 2023-01-10T15:40:27,490 copying scripts/misc.py -> build/lib/scripts 2023-01-10T15:40:27,494 copying scripts/__init__.py -> build/lib/scripts 2023-01-10T15:40:27,497 copying scripts/generate.py -> build/lib/scripts 2023-01-10T15:40:27,500 copying scripts/run.py -> build/lib/scripts 2023-01-10T15:40:27,504 copying scripts/operations.py -> build/lib/scripts 2023-01-10T15:40:27,509 creating build/lib/prioritization 2023-01-10T15:40:27,510 copying prioritization/original_rules.py -> build/lib/prioritization 2023-01-10T15:40:27,515 copying prioritization/__init__.py -> build/lib/prioritization 2023-01-10T15:40:27,518 copying prioritization/generic_rules.py -> build/lib/prioritization 2023-01-10T15:40:27,522 copying prioritization/prioritization_ruleset.py -> build/lib/prioritization 2023-01-10T15:40:27,526 copying prioritization/rule_io.py -> build/lib/prioritization 2023-01-10T15:40:27,529 copying prioritization/prioritization_rules.py -> build/lib/prioritization 2023-01-10T15:40:27,534 creating build/lib/core 2023-01-10T15:40:27,536 copying core/__init__.py -> build/lib/core 2023-01-10T15:40:27,539 copying core/scaffold.py -> build/lib/core 2023-01-10T15:40:27,544 copying core/graph.py -> build/lib/core 2023-01-10T15:40:27,550 copying core/fragment.py -> build/lib/core 2023-01-10T15:40:27,557 creating build/lib/vis 2023-01-10T15:40:27,558 copying vis/__init__.py -> build/lib/vis 2023-01-10T15:40:27,561 copying vis/base.py -> build/lib/vis 2023-01-10T15:40:27,564 copying vis/utils.py -> build/lib/vis 2023-01-10T15:40:27,570 creating build/lib/io 2023-01-10T15:40:27,571 copying io/__init__.py -> build/lib/io 2023-01-10T15:40:27,574 copying io/sdf.py -> build/lib/io 2023-01-10T15:40:27,577 copying io/tsv.py -> build/lib/io 2023-01-10T15:40:27,580 copying io/dataframe.py -> build/lib/io 2023-01-10T15:40:27,583 copying io/supplier.py -> build/lib/io 2023-01-10T15:40:27,586 copying io/smiles.py -> build/lib/io 2023-01-10T15:40:27,591 creating build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,592 copying scaffoldgraphnew/utils/misc.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,596 copying scaffoldgraphnew/utils/__init__.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,598 copying scaffoldgraphnew/utils/cache.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,601 copying scaffoldgraphnew/utils/bipartite.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,604 copying scaffoldgraphnew/utils/logging.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,607 copying scaffoldgraphnew/utils/aggregate.py -> build/lib/scaffoldgraphnew/utils 2023-01-10T15:40:27,612 creating build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,614 copying scaffoldgraphnew/analysis/enrichment.py -> build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,618 copying scaffoldgraphnew/analysis/__init__.py -> build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,621 copying scaffoldgraphnew/analysis/representation.py -> build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,625 copying scaffoldgraphnew/analysis/general.py -> build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,628 copying scaffoldgraphnew/analysis/diversity.py -> build/lib/scaffoldgraphnew/analysis 2023-01-10T15:40:27,632 creating build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,634 copying scaffoldgraphnew/scripts/misc.py -> build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,637 copying scaffoldgraphnew/scripts/__init__.py -> build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,640 copying scaffoldgraphnew/scripts/generate.py -> build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,643 copying scaffoldgraphnew/scripts/run.py -> build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,647 copying scaffoldgraphnew/scripts/operations.py -> build/lib/scaffoldgraphnew/scripts 2023-01-10T15:40:27,652 creating build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,653 copying scaffoldgraphnew/prioritization/original_rules.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,657 copying scaffoldgraphnew/prioritization/__init__.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,660 copying scaffoldgraphnew/prioritization/generic_rules.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,665 copying scaffoldgraphnew/prioritization/prioritization_ruleset.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,669 copying scaffoldgraphnew/prioritization/rule_io.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,672 copying scaffoldgraphnew/prioritization/prioritization_rules.py -> build/lib/scaffoldgraphnew/prioritization 2023-01-10T15:40:27,677 creating build/lib/scaffoldgraphnew/core 2023-01-10T15:40:27,678 copying scaffoldgraphnew/core/__init__.py -> build/lib/scaffoldgraphnew/core 2023-01-10T15:40:27,681 copying scaffoldgraphnew/core/scaffold.py -> build/lib/scaffoldgraphnew/core 2023-01-10T15:40:27,686 copying scaffoldgraphnew/core/graph.py -> build/lib/scaffoldgraphnew/core 2023-01-10T15:40:27,691 copying scaffoldgraphnew/core/fragment.py -> build/lib/scaffoldgraphnew/core 2023-01-10T15:40:27,698 creating build/lib/scaffoldgraphnew/vis 2023-01-10T15:40:27,699 copying scaffoldgraphnew/vis/__init__.py -> build/lib/scaffoldgraphnew/vis 2023-01-10T15:40:27,702 copying scaffoldgraphnew/vis/base.py -> build/lib/scaffoldgraphnew/vis 2023-01-10T15:40:27,705 copying scaffoldgraphnew/vis/utils.py -> build/lib/scaffoldgraphnew/vis 2023-01-10T15:40:27,710 creating build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,712 copying scaffoldgraphnew/io/__init__.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,715 copying scaffoldgraphnew/io/sdf.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,718 copying scaffoldgraphnew/io/tsv.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,721 copying scaffoldgraphnew/io/dataframe.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,724 copying scaffoldgraphnew/io/supplier.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,727 copying scaffoldgraphnew/io/smiles.py -> build/lib/scaffoldgraphnew/io 2023-01-10T15:40:27,732 creating build/lib/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:27,733 copying scaffoldgraphnew/vis/notebook/cytoscape.py -> build/lib/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:27,737 copying scaffoldgraphnew/vis/notebook/__init__.py -> build/lib/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:27,741 creating build/lib/vis/notebook 2023-01-10T15:40:27,742 copying vis/notebook/cytoscape.py -> build/lib/vis/notebook 2023-01-10T15:40:27,746 copying vis/notebook/__init__.py -> build/lib/vis/notebook 2023-01-10T15:40:27,749 running egg_info 2023-01-10T15:40:27,884 writing ScaffoldGraphNew.egg-info/PKG-INFO 2023-01-10T15:40:27,889 writing dependency_links to ScaffoldGraphNew.egg-info/dependency_links.txt 2023-01-10T15:40:27,893 writing entry points to ScaffoldGraphNew.egg-info/entry_points.txt 2023-01-10T15:40:27,895 writing requirements to ScaffoldGraphNew.egg-info/requires.txt 2023-01-10T15:40:27,897 writing top-level names to ScaffoldGraphNew.egg-info/top_level.txt 2023-01-10T15:40:27,992 reading manifest file 'ScaffoldGraphNew.egg-info/SOURCES.txt' 2023-01-10T15:40:28,002 reading manifest template 'MANIFEST.in' 2023-01-10T15:40:28,040 adding license file 'LICENSE' 2023-01-10T15:40:28,060 writing manifest file 'ScaffoldGraphNew.egg-info/SOURCES.txt' 2023-01-10T15:40:28,068 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'scaffoldgraphnew.vis.notebook.resources' as data is deprecated, please list it in `packages`. 2023-01-10T15:40:28,068 !! 2023-01-10T15:40:28,069 ############################ 2023-01-10T15:40:28,070 # Package would be ignored # 2023-01-10T15:40:28,070 ############################ 2023-01-10T15:40:28,070 Python recognizes 'scaffoldgraphnew.vis.notebook.resources' as an importable package, 2023-01-10T15:40:28,070 but it is not listed in the `packages` configuration of setuptools. 2023-01-10T15:40:28,071 'scaffoldgraphnew.vis.notebook.resources' has been automatically added to the distribution only 2023-01-10T15:40:28,071 because it may contain data files, but this behavior is likely to change 2023-01-10T15:40:28,072 in future versions of setuptools (and therefore is considered deprecated). 2023-01-10T15:40:28,072 Please make sure that 'scaffoldgraphnew.vis.notebook.resources' is included as a package by using 2023-01-10T15:40:28,073 the `packages` configuration field or the proper discovery methods 2023-01-10T15:40:28,073 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-10T15:40:28,073 instead of `find_packages(...)`/`find:`). 2023-01-10T15:40:28,074 You can read more about "package discovery" and "data files" on setuptools 2023-01-10T15:40:28,074 documentation page. 2023-01-10T15:40:28,075 !! 2023-01-10T15:40:28,076 check.warn(importable) 2023-01-10T15:40:28,076 creating build/lib/scaffoldgraphnew/vis/notebook/resources 2023-01-10T15:40:28,077 copying scaffoldgraphnew/vis/notebook/resources/cytoscape.json -> build/lib/scaffoldgraphnew/vis/notebook/resources 2023-01-10T15:40:28,205 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-10T15:40:28,205 setuptools.SetuptoolsDeprecationWarning, 2023-01-10T15:40:28,273 installing to build/bdist.linux-armv7l/wheel 2023-01-10T15:40:28,273 running install 2023-01-10T15:40:28,335 running install_lib 2023-01-10T15:40:28,405 creating build/bdist.linux-armv7l 2023-01-10T15:40:28,405 creating build/bdist.linux-armv7l/wheel 2023-01-10T15:40:28,408 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew 2023-01-10T15:40:28,410 copying build/lib/scaffoldgraphnew/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew 2023-01-10T15:40:28,414 copying build/lib/scaffoldgraphnew/network.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew 2023-01-10T15:40:28,419 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,420 copying build/lib/scaffoldgraphnew/utils/misc.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,424 copying build/lib/scaffoldgraphnew/utils/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,428 copying build/lib/scaffoldgraphnew/utils/cache.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,431 copying build/lib/scaffoldgraphnew/utils/bipartite.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,434 copying build/lib/scaffoldgraphnew/utils/logging.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,438 copying build/lib/scaffoldgraphnew/utils/aggregate.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/utils 2023-01-10T15:40:28,442 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,443 copying build/lib/scaffoldgraphnew/analysis/enrichment.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,448 copying build/lib/scaffoldgraphnew/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,451 copying build/lib/scaffoldgraphnew/analysis/representation.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,455 copying build/lib/scaffoldgraphnew/analysis/general.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,458 copying build/lib/scaffoldgraphnew/analysis/diversity.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/analysis 2023-01-10T15:40:28,462 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,464 copying build/lib/scaffoldgraphnew/scripts/misc.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,467 copying build/lib/scaffoldgraphnew/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,470 copying build/lib/scaffoldgraphnew/scripts/generate.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,473 copying build/lib/scaffoldgraphnew/scripts/run.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,477 copying build/lib/scaffoldgraphnew/scripts/operations.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/scripts 2023-01-10T15:40:28,482 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,484 copying build/lib/scaffoldgraphnew/prioritization/original_rules.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,488 copying build/lib/scaffoldgraphnew/prioritization/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,492 copying build/lib/scaffoldgraphnew/prioritization/generic_rules.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,496 copying build/lib/scaffoldgraphnew/prioritization/prioritization_ruleset.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,500 copying build/lib/scaffoldgraphnew/prioritization/rule_io.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,503 copying build/lib/scaffoldgraphnew/prioritization/prioritization_rules.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/prioritization 2023-01-10T15:40:28,508 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/core 2023-01-10T15:40:28,509 copying build/lib/scaffoldgraphnew/core/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/core 2023-01-10T15:40:28,513 copying build/lib/scaffoldgraphnew/core/scaffold.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/core 2023-01-10T15:40:28,518 copying build/lib/scaffoldgraphnew/core/graph.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/core 2023-01-10T15:40:28,524 copying build/lib/scaffoldgraphnew/core/fragment.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/core 2023-01-10T15:40:28,531 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis 2023-01-10T15:40:28,534 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:28,535 copying build/lib/scaffoldgraphnew/vis/notebook/cytoscape.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:28,540 copying build/lib/scaffoldgraphnew/vis/notebook/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis/notebook 2023-01-10T15:40:28,544 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis/notebook/resources 2023-01-10T15:40:28,545 copying build/lib/scaffoldgraphnew/vis/notebook/resources/cytoscape.json -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis/notebook/resources 2023-01-10T15:40:28,549 copying build/lib/scaffoldgraphnew/vis/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis 2023-01-10T15:40:28,552 copying build/lib/scaffoldgraphnew/vis/base.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis 2023-01-10T15:40:28,555 copying build/lib/scaffoldgraphnew/vis/utils.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/vis 2023-01-10T15:40:28,559 copying build/lib/scaffoldgraphnew/tree.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew 2023-01-10T15:40:28,564 creating build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,565 copying build/lib/scaffoldgraphnew/io/__init__.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,568 copying build/lib/scaffoldgraphnew/io/sdf.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,571 copying build/lib/scaffoldgraphnew/io/tsv.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,575 copying build/lib/scaffoldgraphnew/io/dataframe.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,578 copying build/lib/scaffoldgraphnew/io/supplier.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,581 copying build/lib/scaffoldgraphnew/io/smiles.py -> build/bdist.linux-armv7l/wheel/scaffoldgraphnew/io 2023-01-10T15:40:28,585 creating build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,586 copying build/lib/utils/misc.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,590 copying build/lib/utils/__init__.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,593 copying build/lib/utils/cache.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,596 copying build/lib/utils/bipartite.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,599 copying build/lib/utils/logging.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,602 copying build/lib/utils/aggregate.py -> build/bdist.linux-armv7l/wheel/utils 2023-01-10T15:40:28,606 creating build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,607 copying build/lib/analysis/enrichment.py -> build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,611 copying build/lib/analysis/__init__.py -> build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,614 copying build/lib/analysis/representation.py -> build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,619 copying build/lib/analysis/general.py -> build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,622 copying build/lib/analysis/diversity.py -> build/bdist.linux-armv7l/wheel/analysis 2023-01-10T15:40:28,626 creating build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,628 copying build/lib/scripts/misc.py -> build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,631 copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,634 copying build/lib/scripts/generate.py -> build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,637 copying build/lib/scripts/run.py -> build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,641 copying build/lib/scripts/operations.py -> build/bdist.linux-armv7l/wheel/scripts 2023-01-10T15:40:28,646 creating build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,648 copying build/lib/prioritization/original_rules.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,652 copying build/lib/prioritization/__init__.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,655 copying build/lib/prioritization/generic_rules.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,660 copying build/lib/prioritization/prioritization_ruleset.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,665 copying build/lib/prioritization/rule_io.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,668 copying build/lib/prioritization/prioritization_rules.py -> build/bdist.linux-armv7l/wheel/prioritization 2023-01-10T15:40:28,673 creating build/bdist.linux-armv7l/wheel/core 2023-01-10T15:40:28,674 copying build/lib/core/__init__.py -> build/bdist.linux-armv7l/wheel/core 2023-01-10T15:40:28,678 copying build/lib/core/scaffold.py -> build/bdist.linux-armv7l/wheel/core 2023-01-10T15:40:28,683 copying build/lib/core/graph.py -> build/bdist.linux-armv7l/wheel/core 2023-01-10T15:40:28,688 copying build/lib/core/fragment.py -> build/bdist.linux-armv7l/wheel/core 2023-01-10T15:40:28,695 creating build/bdist.linux-armv7l/wheel/vis 2023-01-10T15:40:28,697 creating build/bdist.linux-armv7l/wheel/vis/notebook 2023-01-10T15:40:28,699 copying build/lib/vis/notebook/cytoscape.py -> build/bdist.linux-armv7l/wheel/vis/notebook 2023-01-10T15:40:28,703 copying build/lib/vis/notebook/__init__.py -> build/bdist.linux-armv7l/wheel/vis/notebook 2023-01-10T15:40:28,706 copying build/lib/vis/__init__.py -> build/bdist.linux-armv7l/wheel/vis 2023-01-10T15:40:28,709 copying build/lib/vis/base.py -> build/bdist.linux-armv7l/wheel/vis 2023-01-10T15:40:28,713 copying build/lib/vis/utils.py -> build/bdist.linux-armv7l/wheel/vis 2023-01-10T15:40:28,718 creating build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,719 copying build/lib/io/__init__.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,723 copying build/lib/io/sdf.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,726 copying build/lib/io/tsv.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,729 copying build/lib/io/dataframe.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,732 copying build/lib/io/supplier.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,736 copying build/lib/io/smiles.py -> build/bdist.linux-armv7l/wheel/io 2023-01-10T15:40:28,738 running install_egg_info 2023-01-10T15:40:28,806 Copying ScaffoldGraphNew.egg-info to build/bdist.linux-armv7l/wheel/ScaffoldGraphNew-1.1.5-py3.7.egg-info 2023-01-10T15:40:28,829 running install_scripts 2023-01-10T15:40:29,003 adding license file "LICENSE" (matched pattern "LICENSE") 2023-01-10T15:40:29,009 creating build/bdist.linux-armv7l/wheel/ScaffoldGraphNew-1.1.5.dist-info/WHEEL 2023-01-10T15:40:29,014 creating '/tmp/pip-wheel-kuh__nvn/ScaffoldGraphNew-1.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-10T15:40:29,021 adding 'analysis/__init__.py' 2023-01-10T15:40:29,024 adding 'analysis/diversity.py' 2023-01-10T15:40:29,027 adding 'analysis/enrichment.py' 2023-01-10T15:40:29,030 adding 'analysis/general.py' 2023-01-10T15:40:29,034 adding 'analysis/representation.py' 2023-01-10T15:40:29,038 adding 'core/__init__.py' 2023-01-10T15:40:29,048 adding 'core/fragment.py' 2023-01-10T15:40:29,059 adding 'core/graph.py' 2023-01-10T15:40:29,066 adding 'core/scaffold.py' 2023-01-10T15:40:29,070 adding 'io/__init__.py' 2023-01-10T15:40:29,093 adding 'io/dataframe.py' 2023-01-10T15:40:29,096 adding 'io/sdf.py' 2023-01-10T15:40:29,098 adding 'io/smiles.py' 2023-01-10T15:40:29,101 adding 'io/supplier.py' 2023-01-10T15:40:29,103 adding 'io/tsv.py' 2023-01-10T15:40:29,107 adding 'prioritization/__init__.py' 2023-01-10T15:40:29,111 adding 'prioritization/generic_rules.py' 2023-01-10T15:40:29,115 adding 'prioritization/original_rules.py' 2023-01-10T15:40:29,118 adding 'prioritization/prioritization_rules.py' 2023-01-10T15:40:29,121 adding 'prioritization/prioritization_ruleset.py' 2023-01-10T15:40:29,124 adding 'prioritization/rule_io.py' 2023-01-10T15:40:29,127 adding 'scaffoldgraphnew/__init__.py' 2023-01-10T15:40:29,130 adding 'scaffoldgraphnew/network.py' 2023-01-10T15:40:29,133 adding 'scaffoldgraphnew/tree.py' 2023-01-10T15:40:29,137 adding 'scaffoldgraphnew/analysis/__init__.py' 2023-01-10T15:40:29,139 adding 'scaffoldgraphnew/analysis/diversity.py' 2023-01-10T15:40:29,142 adding 'scaffoldgraphnew/analysis/enrichment.py' 2023-01-10T15:40:29,145 adding 'scaffoldgraphnew/analysis/general.py' 2023-01-10T15:40:29,149 adding 'scaffoldgraphnew/analysis/representation.py' 2023-01-10T15:40:29,153 adding 'scaffoldgraphnew/core/__init__.py' 2023-01-10T15:40:29,164 adding 'scaffoldgraphnew/core/fragment.py' 2023-01-10T15:40:29,179 adding 'scaffoldgraphnew/core/graph.py' 2023-01-10T15:40:29,187 adding 'scaffoldgraphnew/core/scaffold.py' 2023-01-10T15:40:29,191 adding 'scaffoldgraphnew/io/__init__.py' 2023-01-10T15:40:29,194 adding 'scaffoldgraphnew/io/dataframe.py' 2023-01-10T15:40:29,198 adding 'scaffoldgraphnew/io/sdf.py' 2023-01-10T15:40:29,201 adding 'scaffoldgraphnew/io/smiles.py' 2023-01-10T15:40:29,204 adding 'scaffoldgraphnew/io/supplier.py' 2023-01-10T15:40:29,207 adding 'scaffoldgraphnew/io/tsv.py' 2023-01-10T15:40:29,211 adding 'scaffoldgraphnew/prioritization/__init__.py' 2023-01-10T15:40:29,216 adding 'scaffoldgraphnew/prioritization/generic_rules.py' 2023-01-10T15:40:29,220 adding 'scaffoldgraphnew/prioritization/original_rules.py' 2023-01-10T15:40:29,224 adding 'scaffoldgraphnew/prioritization/prioritization_rules.py' 2023-01-10T15:40:29,228 adding 'scaffoldgraphnew/prioritization/prioritization_ruleset.py' 2023-01-10T15:40:29,231 adding 'scaffoldgraphnew/prioritization/rule_io.py' 2023-01-10T15:40:29,235 adding 'scaffoldgraphnew/scripts/__init__.py' 2023-01-10T15:40:29,238 adding 'scaffoldgraphnew/scripts/generate.py' 2023-01-10T15:40:29,241 adding 'scaffoldgraphnew/scripts/misc.py' 2023-01-10T15:40:29,246 adding 'scaffoldgraphnew/scripts/operations.py' 2023-01-10T15:40:29,250 adding 'scaffoldgraphnew/scripts/run.py' 2023-01-10T15:40:29,254 adding 'scaffoldgraphnew/utils/__init__.py' 2023-01-10T15:40:29,257 adding 'scaffoldgraphnew/utils/aggregate.py' 2023-01-10T15:40:29,260 adding 'scaffoldgraphnew/utils/bipartite.py' 2023-01-10T15:40:29,263 adding 'scaffoldgraphnew/utils/cache.py' 2023-01-10T15:40:29,266 adding 'scaffoldgraphnew/utils/logging.py' 2023-01-10T15:40:29,269 adding 'scaffoldgraphnew/utils/misc.py' 2023-01-10T15:40:29,274 adding 'scaffoldgraphnew/vis/__init__.py' 2023-01-10T15:40:29,277 adding 'scaffoldgraphnew/vis/base.py' 2023-01-10T15:40:29,281 adding 'scaffoldgraphnew/vis/utils.py' 2023-01-10T15:40:29,285 adding 'scaffoldgraphnew/vis/notebook/__init__.py' 2023-01-10T15:40:29,289 adding 'scaffoldgraphnew/vis/notebook/cytoscape.py' 2023-01-10T15:40:29,293 adding 'scaffoldgraphnew/vis/notebook/resources/cytoscape.json' 2023-01-10T15:40:29,297 adding 'scripts/__init__.py' 2023-01-10T15:40:29,300 adding 'scripts/generate.py' 2023-01-10T15:40:29,303 adding 'scripts/misc.py' 2023-01-10T15:40:29,308 adding 'scripts/operations.py' 2023-01-10T15:40:29,311 adding 'scripts/run.py' 2023-01-10T15:40:29,316 adding 'utils/__init__.py' 2023-01-10T15:40:29,319 adding 'utils/aggregate.py' 2023-01-10T15:40:29,322 adding 'utils/bipartite.py' 2023-01-10T15:40:29,325 adding 'utils/cache.py' 2023-01-10T15:40:29,328 adding 'utils/logging.py' 2023-01-10T15:40:29,331 adding 'utils/misc.py' 2023-01-10T15:40:29,335 adding 'vis/__init__.py' 2023-01-10T15:40:29,339 adding 'vis/base.py' 2023-01-10T15:40:29,342 adding 'vis/utils.py' 2023-01-10T15:40:29,346 adding 'vis/notebook/__init__.py' 2023-01-10T15:40:29,349 adding 'vis/notebook/cytoscape.py' 2023-01-10T15:40:29,351 adding 'ScaffoldGraphNew-1.1.5.dist-info/LICENSE' 2023-01-10T15:40:29,357 adding 'ScaffoldGraphNew-1.1.5.dist-info/METADATA' 2023-01-10T15:40:29,359 adding 'ScaffoldGraphNew-1.1.5.dist-info/WHEEL' 2023-01-10T15:40:29,361 adding 'ScaffoldGraphNew-1.1.5.dist-info/entry_points.txt' 2023-01-10T15:40:29,362 adding 'ScaffoldGraphNew-1.1.5.dist-info/top_level.txt' 2023-01-10T15:40:29,366 adding 'ScaffoldGraphNew-1.1.5.dist-info/RECORD' 2023-01-10T15:40:29,375 removing build/bdist.linux-armv7l/wheel 2023-01-10T15:40:29,671 Building wheel for scaffoldgraphnew (setup.py): finished with status 'done' 2023-01-10T15:40:29,685 Created wheel for scaffoldgraphnew: filename=ScaffoldGraphNew-1.1.5-py3-none-any.whl size=144599 sha256=639f3e257f1f2447c067412e50d3c862db4dec04547dde0c070deb6739ab2760 2023-01-10T15:40:29,688 Stored in directory: /tmp/pip-ephem-wheel-cache-1ayvwwn3/wheels/39/4e/29/f2a21e30080315944d19b87c5b070af76177ff73b1a1ca5fa8 2023-01-10T15:40:29,729 Successfully built scaffoldgraphnew 2023-01-10T15:40:29,747 Removed build tracker: '/tmp/pip-build-tracker-do6330gh'