2023-01-11T23:56:24,476 Created temporary directory: /tmp/pip-ephem-wheel-cache-y36ieu8i
2023-01-11T23:56:24,481 Created temporary directory: /tmp/pip-build-tracker-u5qts3wt
2023-01-11T23:56:24,482 Initialized build tracking at /tmp/pip-build-tracker-u5qts3wt
2023-01-11T23:56:24,482 Created build tracker: /tmp/pip-build-tracker-u5qts3wt
2023-01-11T23:56:24,483 Entered build tracker: /tmp/pip-build-tracker-u5qts3wt
2023-01-11T23:56:24,484 Created temporary directory: /tmp/pip-wheel-rj0w92jl
2023-01-11T23:56:24,491 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-11T23:56:24,497 Created temporary directory: /tmp/pip-ephem-wheel-cache-d9n3dmkk
2023-01-11T23:56:24,555 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-11T23:56:24,562 2 location(s) to search for versions of amptk:
2023-01-11T23:56:24,562 * https://pypi.org/simple/amptk/
2023-01-11T23:56:24,562 * https://www.piwheels.org/simple/amptk/
2023-01-11T23:56:24,563 Fetching project page and analyzing links: https://pypi.org/simple/amptk/
2023-01-11T23:56:24,564 Getting page https://pypi.org/simple/amptk/
2023-01-11T23:56:24,568 Found index url https://pypi.org/simple
2023-01-11T23:56:24,804 Fetched page https://pypi.org/simple/amptk/ as application/vnd.pypi.simple.v1+json
2023-01-11T23:56:24,816   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/6f/34/5ca4622b12ca9815635d87f325b9190fe542592142dc9f9c940ee797be1b/amptk-1.3.0-py2-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0)
2023-01-11T23:56:24,816   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/c8/87/34c1a064653f16cc2ef7d687a7f1c35ebc5bf25afe6f906fa5463e5c54fa/amptk-1.3.0-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0)
2023-01-11T23:56:24,818   Found link https://files.pythonhosted.org/packages/cf/56/2d5affae81bdf311d7d23faa4758ad387d5fd572ac503a5c90897b339796/amptk-1.3.0.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0), version: 1.3.0
2023-01-11T23:56:24,819   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/79/90/56fd4e5542392026e884ed2c47914fad850f7747e5632c1b6bbe4315e942/amptk-1.4.0-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:24,821   Found link https://files.pythonhosted.org/packages/d6/85/35dbea394dc7414c23e2eae6b05658b64705fe98e9126b311961108702c1/amptk-1.4.0.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.4.0
2023-01-11T23:56:24,822   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/03/51/4537d37e9f48889e17b7bc5e52dc369a785f2d97542c06ceafd808f76a1b/amptk-1.4.1-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:24,825   Found link https://files.pythonhosted.org/packages/57/06/2a7e9d73de4c33f1b3d2b09dc51b221da5c9efb77433c19c61b555040470/amptk-1.4.1.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.4.1
2023-01-11T23:56:24,825   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/91/79/4a6582435ef35f66de33becafaade0caef9af42be9bb241775b44a599c50/amptk-1.4.2-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:24,828   Found link https://files.pythonhosted.org/packages/d5/7b/b0e7232b8f180d83fc1f2d8e9c3639a43d7da52c84600a2bd70341ab1d7e/amptk-1.4.2.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.4.2
2023-01-11T23:56:24,829   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/cb/cc/bb79cd3ec020d571560a26b84975e414c2de200a3ba27dab9f1cf35990cc/amptk-1.5.0-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:24,832   Found link https://files.pythonhosted.org/packages/7a/de/454cf109ce14c3fd2435860231a87e157ccc2e59f237e052ae9869568880/amptk-1.5.0.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4), version: 1.5.0
2023-01-11T23:56:24,832   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/c8/b3/b1839528e3602062043ba88c91b6eb8a7f8713a3d1e80699677d90c38baa/amptk-1.5.1-py2.py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8)
2023-01-11T23:56:24,835   Found link https://files.pythonhosted.org/packages/8d/cc/5b4adb595d64c5dfb6093e98a233a9dd9486ac0c9661dfd47e9f74c089e9/amptk-1.5.1.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8), version: 1.5.1
2023-01-11T23:56:24,836   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/f5/e0/a138b50ea63c83718fa62f51a5710fb03aea5fac478121d4fcb56c7660b7/amptk-1.5.2-py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8)
2023-01-11T23:56:24,838   Found link https://files.pythonhosted.org/packages/64/32/bc98a54a9d75211351c1ccdf62d8b827866a43c6340ee921d5716ffbd572/amptk-1.5.2.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8), version: 1.5.2
2023-01-11T23:56:24,839   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/ea/00/d81c9bee0879366f5b3b47266608893062da2956cb48480985d1ff7ae522/amptk-1.5.3-py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*)
2023-01-11T23:56:24,841   Found link https://files.pythonhosted.org/packages/71/61/907c876d48777630aee0fa84ddab34a024fd59355c10f8a99cfab0c0e1dd/amptk-1.5.3.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*), version: 1.5.3
2023-01-11T23:56:24,842   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/86/78/6d81364da40abd0a3e3c8d05b7926d725bb11f66a9a1fa85e253125e18fa/amptk-1.5.4-py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*)
2023-01-11T23:56:24,844   Found link https://files.pythonhosted.org/packages/57/ea/be2bde6a861e1fc7557b509e44ecae291f7bef60d72a26fe4e724161c584/amptk-1.5.4.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*), version: 1.5.4
2023-01-11T23:56:24,845   Skipping link: No binaries permitted for amptk: https://files.pythonhosted.org/packages/05/cf/e22a910d9dc0182b83b71a00e7b67f8a6b3d2f1cdda63c06fbcc3c190dea/amptk-1.5.5-py3-none-any.whl (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*)
2023-01-11T23:56:24,847   Found link https://files.pythonhosted.org/packages/35/c5/71fcf47afecda9dbb55c02d2753f26f43aca1d1fa3fe34eec2b3a55911a4/amptk-1.5.5.tar.gz (from https://pypi.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*), version: 1.5.5
2023-01-11T23:56:24,848 Fetching project page and analyzing links: https://www.piwheels.org/simple/amptk/
2023-01-11T23:56:24,849 Getting page https://www.piwheels.org/simple/amptk/
2023-01-11T23:56:24,851 Found index url https://www.piwheels.org/simple
2023-01-11T23:56:25,207 Fetched page https://www.piwheels.org/simple/amptk/ as text/html
2023-01-11T23:56:25,216   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.5.4-py3-none-any.whl#sha256=30dea724e9e77667c7f0b80f3312f92af219a0090ab4035ddb839658abb897a4 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*)
2023-01-11T23:56:25,217   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.5.3-py3-none-any.whl#sha256=c0ceab7c24b276ab3d24602c264b0e6821cdbb5501152543d914f4b6f19cffeb (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*)
2023-01-11T23:56:25,217   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.5.2-py3-none-any.whl#sha256=dbe2da7f1d918a5205c2d629da87d69c2e2dd59f8da1c02f0f1a81953617a910 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8)
2023-01-11T23:56:25,218   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.5.1-py2.py3-none-any.whl#sha256=3b78af6b110512d4aee660433a3abf41c5edfed2df26458dddba9684e1262e51 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <3.8)
2023-01-11T23:56:25,218   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.5.0-py2.py3-none-any.whl#sha256=3de21ef89f2b5ef3820b3a60e623177ccf1e6d2036a0097245a6d58de4ce6f77 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:25,219   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.4.2-py2.py3-none-any.whl#sha256=6269e5d4c32d93d0f99446afab777ded0ae4b4ce2a1eef628acb16b36e237209 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:25,219   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.4.1-py2.py3-none-any.whl#sha256=1205d11db04015915cefe912d7f4caf0c0a62c30628c9864ac56ffb6335717f5 (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:25,219   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.4.0-py2.py3-none-any.whl#sha256=8266c953d249d11e5c2623795bc2b90e1326dabe5710673aadd421b8a0c047eb (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0, !=3.0.*, !=3.1.*, !=3.2.*, <4)
2023-01-11T23:56:25,220   Skipping link: No binaries permitted for amptk: https://www.piwheels.org/simple/amptk/amptk-1.3.0-py3-none-any.whl#sha256=d4b626c7af06d0dfdb92e6f0ea0f04f31eb30e7268adaa467cb50de59415a6cd (from https://www.piwheels.org/simple/amptk/) (requires-python:>=2.7.0)
2023-01-11T23:56:25,220 Skipping link: not a file: https://www.piwheels.org/simple/amptk/
2023-01-11T23:56:25,221 Skipping link: not a file: https://pypi.org/simple/amptk/
2023-01-11T23:56:25,257 Given no hashes to check 1 links for project 'amptk': discarding no candidates
2023-01-11T23:56:25,287 Collecting amptk==1.5.5
2023-01-11T23:56:25,291   Created temporary directory: /tmp/pip-unpack-paqc58qa
2023-01-11T23:56:25,539   Downloading amptk-1.5.5.tar.gz (2.1 MB)
2023-01-11T23:56:27,431   Added amptk==1.5.5 from https://files.pythonhosted.org/packages/35/c5/71fcf47afecda9dbb55c02d2753f26f43aca1d1fa3fe34eec2b3a55911a4/amptk-1.5.5.tar.gz to build tracker '/tmp/pip-build-tracker-u5qts3wt'
2023-01-11T23:56:27,435   Running setup.py (path:/tmp/pip-wheel-rj0w92jl/amptk_6310cbca60014103b244e7c7c7681ac6/setup.py) egg_info for package amptk
2023-01-11T23:56:27,436   Created temporary directory: /tmp/pip-pip-egg-info-paxuvzg5
2023-01-11T23:56:27,437   Preparing metadata (setup.py): started
2023-01-11T23:56:27,439   Running command python setup.py egg_info
2023-01-11T23:56:30,356   running egg_info
2023-01-11T23:56:30,361   creating /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info
2023-01-11T23:56:30,453   writing /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/PKG-INFO
2023-01-11T23:56:30,457   writing dependency_links to /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/dependency_links.txt
2023-01-11T23:56:30,461   writing entry points to /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/entry_points.txt
2023-01-11T23:56:30,463   writing requirements to /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/requires.txt
2023-01-11T23:56:30,465   writing top-level names to /tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/top_level.txt
2023-01-11T23:56:30,468   writing manifest file '/tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/SOURCES.txt'
2023-01-11T23:56:30,859   reading manifest file '/tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/SOURCES.txt'
2023-01-11T23:56:30,862   reading manifest template 'MANIFEST.in'
2023-01-11T23:56:30,875   adding license file 'LICENSE.md'
2023-01-11T23:56:30,886   writing manifest file '/tmp/pip-pip-egg-info-paxuvzg5/amptk.egg-info/SOURCES.txt'
2023-01-11T23:56:31,091   Preparing metadata (setup.py): finished with status 'done'
2023-01-11T23:56:31,105   Source in /tmp/pip-wheel-rj0w92jl/amptk_6310cbca60014103b244e7c7c7681ac6 has version 1.5.5, which satisfies requirement amptk==1.5.5 from https://files.pythonhosted.org/packages/35/c5/71fcf47afecda9dbb55c02d2753f26f43aca1d1fa3fe34eec2b3a55911a4/amptk-1.5.5.tar.gz
2023-01-11T23:56:31,107   Removed amptk==1.5.5 from https://files.pythonhosted.org/packages/35/c5/71fcf47afecda9dbb55c02d2753f26f43aca1d1fa3fe34eec2b3a55911a4/amptk-1.5.5.tar.gz from build tracker '/tmp/pip-build-tracker-u5qts3wt'
2023-01-11T23:56:31,126 Created temporary directory: /tmp/pip-unpack-8_novrlu
2023-01-11T23:56:31,128 Building wheels for collected packages: amptk
2023-01-11T23:56:31,137   Created temporary directory: /tmp/pip-wheel-xd4q7vqd
2023-01-11T23:56:31,138   Building wheel for amptk (setup.py): started
2023-01-11T23:56:31,140   Destination directory: /tmp/pip-wheel-xd4q7vqd
2023-01-11T23:56:31,140   Running command python setup.py bdist_wheel
2023-01-11T23:56:34,265   running bdist_wheel
2023-01-11T23:56:35,141   running build
2023-01-11T23:56:35,141   running build_py
2023-01-11T23:56:35,247   creating build
2023-01-11T23:56:35,248   creating build/lib
2023-01-11T23:56:35,249   creating build/lib/amptk
2023-01-11T23:56:35,251   copying amptk/install.py -> build/lib/amptk
2023-01-11T23:56:35,255   copying amptk/stackedBarGraph.py -> build/lib/amptk
2023-01-11T23:56:35,260   copying amptk/collapse_taxonomy.py -> build/lib/amptk
2023-01-11T23:56:35,264   copying amptk/OTU_cluster_ref.py -> build/lib/amptk
2023-01-11T23:56:35,269   copying amptk/info.py -> build/lib/amptk
2023-01-11T23:56:35,273   copying amptk/amptk.py -> build/lib/amptk
2023-01-11T23:56:35,280   copying amptk/heatmap.py -> build/lib/amptk
2023-01-11T23:56:35,285   copying amptk/dada2_pacbio.py -> build/lib/amptk
2023-01-11T23:56:35,290   copying amptk/lulu.py -> build/lib/amptk
2023-01-11T23:56:35,294   copying amptk/OTU_cluster.py -> build/lib/amptk
2023-01-11T23:56:35,299   copying amptk/stats.py -> build/lib/amptk
2023-01-11T23:56:35,303   copying amptk/ont_cluster.py -> build/lib/amptk
2023-01-11T23:56:35,307   copying amptk/amptklib.py -> build/lib/amptk
2023-01-11T23:56:35,316   copying amptk/unoise3.py -> build/lib/amptk
2023-01-11T23:56:35,321   copying amptk/extract_region.py -> build/lib/amptk
2023-01-11T23:56:35,327   copying amptk/filter.py -> build/lib/amptk
2023-01-11T23:56:35,333   copying amptk/funguild.py -> build/lib/amptk
2023-01-11T23:56:35,338   copying amptk/assign_taxonomy.py -> build/lib/amptk
2023-01-11T23:56:35,344   copying amptk/drop.py -> build/lib/amptk
2023-01-11T23:56:35,349   copying amptk/keep_samples.py -> build/lib/amptk
2023-01-11T23:56:35,353   copying amptk/barcode_rarify.py -> build/lib/amptk
2023-01-11T23:56:35,357   copying amptk/fastq2sra.py -> build/lib/amptk
2023-01-11T23:56:35,363   copying amptk/csv2heatmap.py -> build/lib/amptk
2023-01-11T23:56:35,367   copying amptk/summarize_taxonomy.py -> build/lib/amptk
2023-01-11T23:56:35,371   copying amptk/unoise2.py -> build/lib/amptk
2023-01-11T23:56:35,375   copying amptk/process_ont.py -> build/lib/amptk
2023-01-11T23:56:35,380   copying amptk/pybam.py -> build/lib/amptk
2023-01-11T23:56:35,386   copying amptk/process_pacbio.py -> build/lib/amptk
2023-01-11T23:56:35,390   copying amptk/dada2.py -> build/lib/amptk
2023-01-11T23:56:35,395   copying amptk/parse_adonis.py -> build/lib/amptk
2023-01-11T23:56:35,399   copying amptk/process_illumina_raw.py -> build/lib/amptk
2023-01-11T23:56:35,403   copying amptk/merge_metadata.py -> build/lib/amptk
2023-01-11T23:56:35,407   copying amptk/__init__.py -> build/lib/amptk
2023-01-11T23:56:35,410   copying amptk/process_illumina2.py -> build/lib/amptk
2023-01-11T23:56:35,415   copying amptk/process_ion.py -> build/lib/amptk
2023-01-11T23:56:35,420   copying amptk/get_barcode_counts.py -> build/lib/amptk
2023-01-11T23:56:35,424   copying amptk/__version__.py -> build/lib/amptk
2023-01-11T23:56:35,427   copying amptk/remove_samples.py -> build/lib/amptk
2023-01-11T23:56:35,431   copying amptk/process_illumina_folder.py -> build/lib/amptk
2023-01-11T23:56:35,435   running egg_info
2023-01-11T23:56:35,687   writing amptk.egg-info/PKG-INFO
2023-01-11T23:56:35,691   writing dependency_links to amptk.egg-info/dependency_links.txt
2023-01-11T23:56:35,694   writing entry points to amptk.egg-info/entry_points.txt
2023-01-11T23:56:35,697   writing requirements to amptk.egg-info/requires.txt
2023-01-11T23:56:35,699   writing top-level names to amptk.egg-info/top_level.txt
2023-01-11T23:56:35,803   reading manifest file 'amptk.egg-info/SOURCES.txt'
2023-01-11T23:56:35,813   reading manifest template 'MANIFEST.in'
2023-01-11T23:56:35,824   adding license file 'LICENSE.md'
2023-01-11T23:56:35,838   writing manifest file 'amptk.egg-info/SOURCES.txt'
2023-01-11T23:56:35,845   /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'amptk.DB' as data is deprecated, please list it in `packages`.
2023-01-11T23:56:35,845       !!


2023-01-11T23:56:35,846       ############################
2023-01-11T23:56:35,847       # Package would be ignored #
2023-01-11T23:56:35,847       ############################
2023-01-11T23:56:35,847       Python recognizes 'amptk.DB' as an importable package,
2023-01-11T23:56:35,848       but it is not listed in the `packages` configuration of setuptools.

2023-01-11T23:56:35,848       'amptk.DB' has been automatically added to the distribution only
2023-01-11T23:56:35,848       because it may contain data files, but this behavior is likely to change
2023-01-11T23:56:35,849       in future versions of setuptools (and therefore is considered deprecated).

2023-01-11T23:56:35,849       Please make sure that 'amptk.DB' is included as a package by using
2023-01-11T23:56:35,850       the `packages` configuration field or the proper discovery methods
2023-01-11T23:56:35,850       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-01-11T23:56:35,850       instead of `find_packages(...)`/`find:`).

2023-01-11T23:56:35,852       You can read more about "package discovery" and "data files" on setuptools
2023-01-11T23:56:35,852       documentation page.


2023-01-11T23:56:35,853   !!

2023-01-11T23:56:35,854     check.warn(importable)
2023-01-11T23:56:35,855   copying amptk/check_version.R -> build/lib/amptk
2023-01-11T23:56:35,855   copying amptk/dada2_pipeline_nofilt.R -> build/lib/amptk
2023-01-11T23:56:35,859   copying amptk/downloads.json -> build/lib/amptk
2023-01-11T23:56:35,863   copying amptk/phyloseq_nmds.R -> build/lib/amptk
2023-01-11T23:56:35,868   copying amptk/phyloseq_nmds_indicator.R -> build/lib/amptk
2023-01-11T23:56:35,873   copying amptk/primers.json -> build/lib/amptk
2023-01-11T23:56:35,878   copying amptk/runLULU.R -> build/lib/amptk
2023-01-11T23:56:35,882   creating build/lib/amptk/DB
2023-01-11T23:56:35,883   copying amptk/DB/amptk_mock1.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,888   copying amptk/DB/amptk_mock2.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,893   copying amptk/DB/amptk_mock3.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,899   copying amptk/DB/amptk_synmock.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,903   copying amptk/DB/ioncode_barcodes.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,908   copying amptk/DB/ionxpress_barcodes.fa -> build/lib/amptk/DB
2023-01-11T23:56:35,917   running build_scripts
2023-01-11T23:56:35,918   creating build/scripts-3.7
2023-01-11T23:56:35,919   copying and adjusting scripts/bold2utax.py -> build/scripts-3.7
2023-01-11T23:56:35,924   copying and adjusting scripts/amptk_synthetic_mock.py -> build/scripts-3.7
2023-01-11T23:56:35,927   changing mode of build/scripts-3.7/bold2utax.py from 644 to 755
2023-01-11T23:56:35,928   changing mode of build/scripts-3.7/amptk_synthetic_mock.py from 644 to 755
2023-01-11T23:56:36,028   /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
2023-01-11T23:56:36,029     setuptools.SetuptoolsDeprecationWarning,
2023-01-11T23:56:36,123   installing to build/bdist.linux-armv7l/wheel
2023-01-11T23:56:36,124   running install
2023-01-11T23:56:36,186   running install_lib
2023-01-11T23:56:36,283   creating build/bdist.linux-armv7l
2023-01-11T23:56:36,284   creating build/bdist.linux-armv7l/wheel
2023-01-11T23:56:36,288   creating build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,290   copying build/lib/amptk/install.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,293   copying build/lib/amptk/primers.json -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,297   copying build/lib/amptk/stackedBarGraph.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,301   copying build/lib/amptk/collapse_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,305   copying build/lib/amptk/OTU_cluster_ref.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,309   copying build/lib/amptk/info.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,313   copying build/lib/amptk/amptk.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,319   copying build/lib/amptk/phyloseq_nmds_indicator.R -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,324   copying build/lib/amptk/downloads.json -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,327   copying build/lib/amptk/heatmap.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,331   copying build/lib/amptk/dada2_pacbio.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,335   copying build/lib/amptk/lulu.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,340   copying build/lib/amptk/OTU_cluster.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,344   copying build/lib/amptk/stats.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,348   copying build/lib/amptk/ont_cluster.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,351   copying build/lib/amptk/amptklib.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,361   copying build/lib/amptk/unoise3.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,365   copying build/lib/amptk/runLULU.R -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,369   copying build/lib/amptk/extract_region.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,374   copying build/lib/amptk/filter.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,379   copying build/lib/amptk/funguild.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,383   copying build/lib/amptk/assign_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,389   copying build/lib/amptk/drop.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,392   copying build/lib/amptk/keep_samples.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,396   copying build/lib/amptk/barcode_rarify.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,399   copying build/lib/amptk/fastq2sra.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,404   copying build/lib/amptk/dada2_pipeline_nofilt.R -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,407   copying build/lib/amptk/csv2heatmap.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,411   copying build/lib/amptk/summarize_taxonomy.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,415   copying build/lib/amptk/unoise2.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,419   copying build/lib/amptk/process_ont.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,424   copying build/lib/amptk/pybam.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,430   copying build/lib/amptk/process_pacbio.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,435   copying build/lib/amptk/dada2.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,440   creating build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,442   copying build/lib/amptk/DB/amptk_synmock.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,446   copying build/lib/amptk/DB/amptk_mock3.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,451   copying build/lib/amptk/DB/ionxpress_barcodes.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,454   copying build/lib/amptk/DB/amptk_mock1.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,458   copying build/lib/amptk/DB/ioncode_barcodes.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,462   copying build/lib/amptk/DB/amptk_mock2.fa -> build/bdist.linux-armv7l/wheel/amptk/DB
2023-01-11T23:56:36,466   copying build/lib/amptk/parse_adonis.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,470   copying build/lib/amptk/process_illumina_raw.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,474   copying build/lib/amptk/merge_metadata.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,478   copying build/lib/amptk/__init__.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,481   copying build/lib/amptk/process_illumina2.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,485   copying build/lib/amptk/process_ion.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,490   copying build/lib/amptk/phyloseq_nmds.R -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,494   copying build/lib/amptk/get_barcode_counts.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,498   copying build/lib/amptk/__version__.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,502   copying build/lib/amptk/remove_samples.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,505   copying build/lib/amptk/process_illumina_folder.py -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,510   copying build/lib/amptk/check_version.R -> build/bdist.linux-armv7l/wheel/amptk
2023-01-11T23:56:36,512   running install_egg_info
2023-01-11T23:56:36,619   Copying amptk.egg-info to build/bdist.linux-armv7l/wheel/amptk-1.5.5-py3.7.egg-info
2023-01-11T23:56:36,641   running install_scripts
2023-01-11T23:56:36,752   creating build/bdist.linux-armv7l/wheel/amptk-1.5.5.data
2023-01-11T23:56:36,753   creating build/bdist.linux-armv7l/wheel/amptk-1.5.5.data/scripts
2023-01-11T23:56:36,755   copying build/scripts-3.7/bold2utax.py -> build/bdist.linux-armv7l/wheel/amptk-1.5.5.data/scripts
2023-01-11T23:56:36,760   copying build/scripts-3.7/amptk_synthetic_mock.py -> build/bdist.linux-armv7l/wheel/amptk-1.5.5.data/scripts
2023-01-11T23:56:36,763   changing mode of build/bdist.linux-armv7l/wheel/amptk-1.5.5.data/scripts/bold2utax.py to 755
2023-01-11T23:56:36,764   changing mode of build/bdist.linux-armv7l/wheel/amptk-1.5.5.data/scripts/amptk_synthetic_mock.py to 755
2023-01-11T23:56:36,825   adding license file "LICENSE.md" (matched pattern "LICEN[CS]E*")
2023-01-11T23:56:36,833   creating build/bdist.linux-armv7l/wheel/amptk-1.5.5.dist-info/WHEEL
2023-01-11T23:56:36,838   creating '/tmp/pip-wheel-xd4q7vqd/amptk-1.5.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-01-11T23:56:36,845   adding 'amptk/OTU_cluster.py'
2023-01-11T23:56:36,851   adding 'amptk/OTU_cluster_ref.py'
2023-01-11T23:56:36,854   adding 'amptk/__init__.py'
2023-01-11T23:56:36,855   adding 'amptk/__version__.py'
2023-01-11T23:56:36,867   adding 'amptk/amptk.py'
2023-01-11T23:56:36,890   adding 'amptk/amptklib.py'
2023-01-11T23:56:36,900   adding 'amptk/assign_taxonomy.py'
2023-01-11T23:56:36,903   adding 'amptk/barcode_rarify.py'
2023-01-11T23:56:36,906   adding 'amptk/check_version.R'
2023-01-11T23:56:36,909   adding 'amptk/collapse_taxonomy.py'
2023-01-11T23:56:36,912   adding 'amptk/csv2heatmap.py'
2023-01-11T23:56:36,917   adding 'amptk/dada2.py'
2023-01-11T23:56:36,922   adding 'amptk/dada2_pacbio.py'
2023-01-11T23:56:36,925   adding 'amptk/dada2_pipeline_nofilt.R'
2023-01-11T23:56:36,927   adding 'amptk/downloads.json'
2023-01-11T23:56:36,930   adding 'amptk/drop.py'
2023-01-11T23:56:36,938   adding 'amptk/extract_region.py'
2023-01-11T23:56:36,945   adding 'amptk/fastq2sra.py'
2023-01-11T23:56:36,955   adding 'amptk/filter.py'
2023-01-11T23:56:36,958   adding 'amptk/funguild.py'
2023-01-11T23:56:36,962   adding 'amptk/get_barcode_counts.py'
2023-01-11T23:56:36,965   adding 'amptk/heatmap.py'
2023-01-11T23:56:36,968   adding 'amptk/info.py'
2023-01-11T23:56:36,971   adding 'amptk/install.py'
2023-01-11T23:56:36,973   adding 'amptk/keep_samples.py'
2023-01-11T23:56:36,977   adding 'amptk/lulu.py'
2023-01-11T23:56:36,980   adding 'amptk/merge_metadata.py'
2023-01-11T23:56:36,983   adding 'amptk/ont_cluster.py'
2023-01-11T23:56:36,985   adding 'amptk/parse_adonis.py'
2023-01-11T23:56:36,990   adding 'amptk/phyloseq_nmds.R'
2023-01-11T23:56:36,995   adding 'amptk/phyloseq_nmds_indicator.R'
2023-01-11T23:56:36,997   adding 'amptk/primers.json'
2023-01-11T23:56:37,003   adding 'amptk/process_illumina2.py'
2023-01-11T23:56:37,010   adding 'amptk/process_illumina_folder.py'
2023-01-11T23:56:37,015   adding 'amptk/process_illumina_raw.py'
2023-01-11T23:56:37,021   adding 'amptk/process_ion.py'
2023-01-11T23:56:37,027   adding 'amptk/process_ont.py'
2023-01-11T23:56:37,032   adding 'amptk/process_pacbio.py'
2023-01-11T23:56:37,045   adding 'amptk/pybam.py'
2023-01-11T23:56:37,049   adding 'amptk/remove_samples.py'
2023-01-11T23:56:37,051   adding 'amptk/runLULU.R'
2023-01-11T23:56:37,055   adding 'amptk/stackedBarGraph.py'
2023-01-11T23:56:37,058   adding 'amptk/stats.py'
2023-01-11T23:56:37,062   adding 'amptk/summarize_taxonomy.py'
2023-01-11T23:56:37,066   adding 'amptk/unoise2.py'
2023-01-11T23:56:37,071   adding 'amptk/unoise3.py'
2023-01-11T23:56:37,078   adding 'amptk/DB/amptk_mock1.fa'
2023-01-11T23:56:37,089   adding 'amptk/DB/amptk_mock2.fa'
2023-01-11T23:56:37,099   adding 'amptk/DB/amptk_mock3.fa'
2023-01-11T23:56:37,103   adding 'amptk/DB/amptk_synmock.fa'
2023-01-11T23:56:37,108   adding 'amptk/DB/ioncode_barcodes.fa'
2023-01-11T23:56:37,111   adding 'amptk/DB/ionxpress_barcodes.fa'
2023-01-11T23:56:37,116   adding 'amptk-1.5.5.data/scripts/amptk_synthetic_mock.py'
2023-01-11T23:56:37,120   adding 'amptk-1.5.5.data/scripts/bold2utax.py'
2023-01-11T23:56:37,125   adding 'amptk-1.5.5.dist-info/LICENSE.md'
2023-01-11T23:56:37,127   adding 'amptk-1.5.5.dist-info/METADATA'
2023-01-11T23:56:37,129   adding 'amptk-1.5.5.dist-info/WHEEL'
2023-01-11T23:56:37,130   adding 'amptk-1.5.5.dist-info/entry_points.txt'
2023-01-11T23:56:37,132   adding 'amptk-1.5.5.dist-info/top_level.txt'
2023-01-11T23:56:37,135   adding 'amptk-1.5.5.dist-info/RECORD'
2023-01-11T23:56:37,145   removing build/bdist.linux-armv7l/wheel
2023-01-11T23:56:37,425   Building wheel for amptk (setup.py): finished with status 'done'
2023-01-11T23:56:37,437   Created wheel for amptk: filename=amptk-1.5.5-py3-none-any.whl size=200397 sha256=b2c92138f1dc935fa86eeae466478e2e4d499bd596e9a07a91c8efe55aa9abe3
2023-01-11T23:56:37,440   Stored in directory: /tmp/pip-ephem-wheel-cache-d9n3dmkk/wheels/fb/e2/ae/78d8e4799a8a471d192d01220a5ce73ed6558485e466b53e2c
2023-01-11T23:56:37,471 Successfully built amptk
2023-01-11T23:56:37,494 Removed build tracker: '/tmp/pip-build-tracker-u5qts3wt'