2023-01-12T13:25:50,506 Created temporary directory: /tmp/pip-ephem-wheel-cache-su3yg4u6
2023-01-12T13:25:50,508 Created temporary directory: /tmp/pip-build-tracker-4cj4ylnx
2023-01-12T13:25:50,509 Initialized build tracking at /tmp/pip-build-tracker-4cj4ylnx
2023-01-12T13:25:50,509 Created build tracker: /tmp/pip-build-tracker-4cj4ylnx
2023-01-12T13:25:50,509 Entered build tracker: /tmp/pip-build-tracker-4cj4ylnx
2023-01-12T13:25:50,509 Created temporary directory: /tmp/pip-wheel-8weeh0uu
2023-01-12T13:25:50,513 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-12T13:25:50,515 Created temporary directory: /tmp/pip-ephem-wheel-cache-joxuo3ac
2023-01-12T13:25:50,541 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-12T13:25:50,545 2 location(s) to search for versions of patato:
2023-01-12T13:25:50,545 * https://pypi.org/simple/patato/
2023-01-12T13:25:50,545 * https://www.piwheels.org/simple/patato/
2023-01-12T13:25:50,545 Fetching project page and analyzing links: https://pypi.org/simple/patato/
2023-01-12T13:25:50,545 Getting page https://pypi.org/simple/patato/
2023-01-12T13:25:50,547 Found index url https://pypi.org/simple
2023-01-12T13:25:50,600 Fetched page https://pypi.org/simple/patato/ as application/vnd.pypi.simple.v1+json
2023-01-12T13:25:50,605   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/56/32/fbbf69741eaecb3596f97c1c8ab58b861254d672b489095bebbeb90436fe/patato-0.0.2-cp310-cp310-macosx_10_9_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,606   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/92/f9/2d2fe2bb953f84d2d3f1dde82063001aa46c408525b3c53966184396b7bb/patato-0.0.2-cp310-cp310-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,606   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/1d/69/d52f2a889fdb05edd6d4b22e2090ffa2f1a4fad59c78eaaf98d0aa29e74c/patato-0.0.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,606   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/05/08/e093ed1e51f6d2e70da4e6e4d3f1c060261e38a41d17a03a806e7cda56f7/patato-0.0.2-cp310-cp310-musllinux_1_1_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,606   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/97/a7/590e263df0727b9c6f8af1e88d1bd9e6cabba9030696a31fcc5b0bdd7453/patato-0.0.2-cp310-cp310-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,607   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/42/35/f61faedc7eb2c07be89af123761a3b4af75c3c3597c40ab95809169bb792/patato-0.0.2-cp310-cp310-win32.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,607   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/01/ca/e687065084a026cd22897bd10fc960c1a4081b5f06ab23f3e241d43ad85f/patato-0.0.2-cp310-cp310-win_amd64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,607   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/31/cd/5ec0e6ea1bf661ccadc9462a8f648531700977e27e6addc97385276c2781/patato-0.0.2-cp311-cp311-macosx_10_9_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,607   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/14/ce/28b2991d8514cbe006b5543c6462862ccb16ff9e34db6b2da17d84d93017/patato-0.0.2-cp311-cp311-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,607   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/dd/55/45bccb482d82b1dbd1ec7c8820787fc70bc2efe11e54cb7accdd50c6cb17/patato-0.0.2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,608   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/cf/91/08523881292f16983a7d998b29e327f0985d7a00ff246d4942c25a95d71b/patato-0.0.2-cp311-cp311-musllinux_1_1_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,608   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/91/44/9d1d8084a1960a3f130885796fd4ea6084c8fc284e9d15bebd47eaa78aca/patato-0.0.2-cp311-cp311-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,608   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/ac/61/b4e475a39b121361c72f0bce33f527ad53d17237f5657dad2dfc177fe60b/patato-0.0.2-cp311-cp311-win32.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,608   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/32/fb/6e0db93d5e3cb698bdc657155bc44205bcb63f5864b58fad4053b1fd6dc9/patato-0.0.2-cp311-cp311-win_amd64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,608   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/6a/ab/93af48195151ae2e7186095c01f4da18de74b2aa8aac478500371604120e/patato-0.0.2-cp39-cp39-macosx_10_9_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,609   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/2c/ec/91dc976f979b2ca42c7d7354e1eccdfbd8b22fc2e86b90db5e9b170374ff/patato-0.0.2-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,609   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/b3/8a/b252d1bd2786257a4779402176168b8e7d46b70e87266be936dede26cacc/patato-0.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,609   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/90/25/80a9e8937a5e5abf299e2260b47e70e0dce4a60e437827243d56325bcf8b/patato-0.0.2-cp39-cp39-musllinux_1_1_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,609   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/ad/b4/3d9f93e731485d2708bd49705e339f4841ee1513bc09b494bf9ac851185d/patato-0.0.2-cp39-cp39-musllinux_1_1_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,609   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/86/be/df8fae62fd23f6fcd24dbb9731abf35c088378cdfc3ddeba87bef65669f1/patato-0.0.2-cp39-cp39-win32.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,610   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/4b/3c/f82ff153d56ab27aa9c6f8b74482154f71b7a32011f59a7f4cd658b143d3/patato-0.0.2-cp39-cp39-win_amd64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,610   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/60/90/ae3a53143fe7c25ef1ee82a3e2edcfe4bf52e21e21223d37df1acff2dd70/patato-0.0.2-pp39-pypy39_pp73-macosx_10_9_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,610   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/4c/47/c70bcfa3bf1fea48a18a0013bf9131a9f2821b5bc7c1628786d211cb95e7/patato-0.0.2-pp39-pypy39_pp73-manylinux_2_17_i686.manylinux2014_i686.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,610   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/6a/ff/33468579474d354433d6e0974d368d353c073ad8c7457d066afb05ca7897/patato-0.0.2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,610   Skipping link: No binaries permitted for patato: https://files.pythonhosted.org/packages/ff/0a/42fa9aff007cd8578214f9eb548ab46f25c2a222c06301c27e748c7d4b34/patato-0.0.2-pp39-pypy39_pp73-win_amd64.whl (from https://pypi.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,611   Found link https://files.pythonhosted.org/packages/31/58/cc703b71efadc9f3bed27b062ef6e88750fe27903a8d77232a2bfe0e8c1c/patato-0.0.2.tar.gz (from https://pypi.org/simple/patato/) (requires-python:>=3.9), version: 0.0.2
2023-01-12T13:25:50,612 Fetching project page and analyzing links: https://www.piwheels.org/simple/patato/
2023-01-12T13:25:50,612 Getting page https://www.piwheels.org/simple/patato/
2023-01-12T13:25:50,613 Found index url https://www.piwheels.org/simple
2023-01-12T13:25:50,787 Fetched page https://www.piwheels.org/simple/patato/ as text/html
2023-01-12T13:25:50,789   Skipping link: No binaries permitted for patato: https://www.piwheels.org/simple/patato/patato-0.0.1-cp39-cp39-linux_armv7l.whl#sha256=afd6059446303b0dca43d2662b7615190ae416a88587059b59bd5ec9496bc137 (from https://www.piwheels.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,789   Skipping link: No binaries permitted for patato: https://www.piwheels.org/simple/patato/patato-0.0.1-cp39-cp39-linux_armv6l.whl#sha256=afd6059446303b0dca43d2662b7615190ae416a88587059b59bd5ec9496bc137 (from https://www.piwheels.org/simple/patato/) (requires-python:>=3.9)
2023-01-12T13:25:50,789 Skipping link: not a file: https://www.piwheels.org/simple/patato/
2023-01-12T13:25:50,790 Skipping link: not a file: https://pypi.org/simple/patato/
2023-01-12T13:25:50,808 Given no hashes to check 1 links for project 'patato': discarding no candidates
2023-01-12T13:25:50,824 Collecting patato==0.0.2
2023-01-12T13:25:50,826   Created temporary directory: /tmp/pip-unpack-r5jrk9g6
2023-01-12T13:25:51,020   Downloading patato-0.0.2.tar.gz (111 kB)
2023-01-12T13:25:51,340   Added patato==0.0.2 from https://files.pythonhosted.org/packages/31/58/cc703b71efadc9f3bed27b062ef6e88750fe27903a8d77232a2bfe0e8c1c/patato-0.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-4cj4ylnx'
2023-01-12T13:25:51,347   Created temporary directory: /tmp/pip-build-env-5gop3g0_
2023-01-12T13:25:51,355   Installing build dependencies: started
2023-01-12T13:25:51,355   Running command pip subprocess to install build dependencies
2023-01-12T13:25:52,590   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-01-12T13:25:52,968   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-01-12T13:25:52,992   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-01-12T13:25:54,656   Collecting setuptools
2023-01-12T13:25:54,785     Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.7.0-py3-none-any.whl (1.2 MB)
2023-01-12T13:25:55,057   Collecting wheel
2023-01-12T13:25:55,075     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-01-12T13:25:55,255   Collecting pybind11
2023-01-12T13:25:55,291     Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.10.3-py3-none-any.whl (222 kB)
2023-01-12T13:25:57,177   Installing collected packages: wheel, setuptools, pybind11
2023-01-12T13:25:57,330     Creating /tmp/pip-build-env-5gop3g0_/overlay/bin
2023-01-12T13:25:57,332     changing mode of /tmp/pip-build-env-5gop3g0_/overlay/bin/wheel to 755
2023-01-12T13:26:00,033     changing mode of /tmp/pip-build-env-5gop3g0_/overlay/bin/pybind11-config to 755
2023-01-12T13:26:00,051   Successfully installed pybind11-2.10.3 setuptools-65.7.0 wheel-0.38.4

2023-01-12T13:26:00,065   [notice] A new release of pip available: 22.3 -> 22.3.1
2023-01-12T13:26:00,065   [notice] To update, run: python3 -m pip install --upgrade pip
2023-01-12T13:26:00,329   Installing build dependencies: finished with status 'done'
2023-01-12T13:26:00,334   Getting requirements to build wheel: started
2023-01-12T13:26:00,335   Running command Getting requirements to build wheel
2023-01-12T13:26:01,134   /tmp/pip-build-env-5gop3g0_/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-12T13:26:01,134     warnings.warn(msg, _BetaConfiguration)
2023-01-12T13:26:01,433   running egg_info
2023-01-12T13:26:01,440   writing patato.egg-info/PKG-INFO
2023-01-12T13:26:01,442   writing dependency_links to patato.egg-info/dependency_links.txt
2023-01-12T13:26:01,445   writing entry points to patato.egg-info/entry_points.txt
2023-01-12T13:26:01,447   writing requirements to patato.egg-info/requires.txt
2023-01-12T13:26:01,448   writing top-level names to patato.egg-info/top_level.txt
2023-01-12T13:26:01,535   reading manifest file 'patato.egg-info/SOURCES.txt'
2023-01-12T13:26:01,540   adding license file 'LICENSE.md'
2023-01-12T13:26:01,549   writing manifest file 'patato.egg-info/SOURCES.txt'
2023-01-12T13:26:01,690   Getting requirements to build wheel: finished with status 'done'
2023-01-12T13:26:01,699   Created temporary directory: /tmp/pip-modern-metadata-zy6eprcy
2023-01-12T13:26:01,702   Preparing metadata (pyproject.toml): started
2023-01-12T13:26:01,703   Running command Preparing metadata (pyproject.toml)
2023-01-12T13:26:02,468   /tmp/pip-build-env-5gop3g0_/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-12T13:26:02,468     warnings.warn(msg, _BetaConfiguration)
2023-01-12T13:26:02,757   running dist_info
2023-01-12T13:26:02,764   creating /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info
2023-01-12T13:26:02,769   writing /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/PKG-INFO
2023-01-12T13:26:02,771   writing dependency_links to /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/dependency_links.txt
2023-01-12T13:26:02,774   writing entry points to /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/entry_points.txt
2023-01-12T13:26:02,776   writing requirements to /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/requires.txt
2023-01-12T13:26:02,778   writing top-level names to /tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/top_level.txt
2023-01-12T13:26:02,779   writing manifest file '/tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/SOURCES.txt'
2023-01-12T13:26:02,854   reading manifest file '/tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/SOURCES.txt'
2023-01-12T13:26:02,857   adding license file 'LICENSE.md'
2023-01-12T13:26:02,863   writing manifest file '/tmp/pip-modern-metadata-zy6eprcy/patato.egg-info/SOURCES.txt'
2023-01-12T13:26:02,865   creating '/tmp/pip-modern-metadata-zy6eprcy/patato-0.0.2.dist-info'
2023-01-12T13:26:03,068   Preparing metadata (pyproject.toml): finished with status 'done'
2023-01-12T13:26:03,075   Source in /tmp/pip-wheel-8weeh0uu/patato_ef31a1f79a864ddca0ceb1d4768529ec has version 0.0.2, which satisfies requirement patato==0.0.2 from https://files.pythonhosted.org/packages/31/58/cc703b71efadc9f3bed27b062ef6e88750fe27903a8d77232a2bfe0e8c1c/patato-0.0.2.tar.gz
2023-01-12T13:26:03,076   Removed patato==0.0.2 from https://files.pythonhosted.org/packages/31/58/cc703b71efadc9f3bed27b062ef6e88750fe27903a8d77232a2bfe0e8c1c/patato-0.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-4cj4ylnx'
2023-01-12T13:26:03,082 Created temporary directory: /tmp/pip-unpack-my_4dz1s
2023-01-12T13:26:03,083 Building wheels for collected packages: patato
2023-01-12T13:26:03,087   Created temporary directory: /tmp/pip-wheel-zp59s0v7
2023-01-12T13:26:03,087   Destination directory: /tmp/pip-wheel-zp59s0v7
2023-01-12T13:26:03,090   Building wheel for patato (pyproject.toml): started
2023-01-12T13:26:03,091   Running command Building wheel for patato (pyproject.toml)
2023-01-12T13:26:03,870   /tmp/pip-build-env-5gop3g0_/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-01-12T13:26:03,871     warnings.warn(msg, _BetaConfiguration)
2023-01-12T13:26:04,153   running bdist_wheel
2023-01-12T13:26:04,171   running build
2023-01-12T13:26:04,171   running build_py
2023-01-12T13:26:04,176   creating build
2023-01-12T13:26:04,177   creating build/lib.linux-armv7l-cpython-39
2023-01-12T13:26:04,178   creating build/lib.linux-armv7l-cpython-39/patato
2023-01-12T13:26:04,179   copying patato/__init__.py -> build/lib.linux-armv7l-cpython-39/patato
2023-01-12T13:26:04,182   creating build/lib.linux-armv7l-cpython-39/patato/io
2023-01-12T13:26:04,183   copying patato/io/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io
2023-01-12T13:26:04,185   copying patato/io/attribute_tags.py -> build/lib.linux-armv7l-cpython-39/patato/io
2023-01-12T13:26:04,187   copying patato/io/hdf5_converter.py -> build/lib.linux-armv7l-cpython-39/patato/io
2023-01-12T13:26:04,189   copying patato/io/msot_data.py -> build/lib.linux-armv7l-cpython-39/patato/io
2023-01-12T13:26:04,193   creating build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,194   copying patato/convenience_scripts/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,196   copying patato/convenience_scripts/import_clinical_data.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,198   copying patato/convenience_scripts/copy_rois.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,201   copying patato/convenience_scripts/convert_binary_to_hdf5.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,203   copying patato/convenience_scripts/scan_status.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,205   copying patato/convenience_scripts/generate_core.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,207   copying patato/convenience_scripts/view.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,209   copying patato/convenience_scripts/generate_masks.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,211   copying patato/convenience_scripts/print_speeds.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,213   copying patato/convenience_scripts/unmix.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,215   copying patato/convenience_scripts/tune_speed_of_sound.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,218   copying patato/convenience_scripts/convert_simpa.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,220   copying patato/convenience_scripts/split_rois.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,222   copying patato/convenience_scripts/import_ithera_recons.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,224   copying patato/convenience_scripts/process_msot.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,226   copying patato/convenience_scripts/rename_scan.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,228   copying patato/convenience_scripts/draw_roi.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,231   creating build/lib.linux-armv7l-cpython-39/patato/bohndieklab_utilities
2023-01-12T13:26:04,232   copying patato/bohndieklab_utilities/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/bohndieklab_utilities
2023-01-12T13:26:04,236   creating build/lib.linux-armv7l-cpython-39/patato/core
2023-01-12T13:26:04,236   copying patato/core/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/core
2023-01-12T13:26:04,239   copying patato/core/data_array.py -> build/lib.linux-armv7l-cpython-39/patato/core
2023-01-12T13:26:04,242   creating build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,243   copying patato/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,245   copying patato/utils/run_pipeline.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,247   copying patato/utils/time_series_analysis.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,250   copying patato/utils/mask_operations.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,252   copying patato/utils/roi_operations.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,254   copying patato/utils/plotting.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,256   copying patato/utils/process_study.py -> build/lib.linux-armv7l-cpython-39/patato/utils
2023-01-12T13:26:04,259   creating build/lib.linux-armv7l-cpython-39/patato/unmixing
2023-01-12T13:26:04,259   copying patato/unmixing/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/unmixing
2023-01-12T13:26:04,262   copying patato/unmixing/unmixer.py -> build/lib.linux-armv7l-cpython-39/patato/unmixing
2023-01-12T13:26:04,265   creating build/lib.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,266   copying patato/recon/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,268   copying patato/recon/backprojection_reference.py -> build/lib.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,270   copying patato/recon/reconstruction_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,272   copying patato/recon/backprojection_opencl.py -> build/lib.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,275   creating build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,276   copying patato/processing/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,278   copying patato/processing/preprocessing_types.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,281   copying patato/processing/jax_preprocessing_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,283   copying patato/processing/preprocessing_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,286   copying patato/processing/gpu_preprocessing_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,288   copying patato/processing/processing_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/processing
2023-01-12T13:26:04,291   creating build/lib.linux-armv7l-cpython-39/patato/data
2023-01-12T13:26:04,292   copying patato/data/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/data
2023-01-12T13:26:04,295   creating build/lib.linux-armv7l-cpython-39/patato/io/ithera
2023-01-12T13:26:04,296   copying patato/io/ithera/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/ithera
2023-01-12T13:26:04,299   copying patato/io/ithera/read_ithera.py -> build/lib.linux-armv7l-cpython-39/patato/io/ithera
2023-01-12T13:26:04,303   creating build/lib.linux-armv7l-cpython-39/patato/io/tests
2023-01-12T13:26:04,304   copying patato/io/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/tests
2023-01-12T13:26:04,306   copying patato/io/tests/test_msot_data.py -> build/lib.linux-armv7l-cpython-39/patato/io/tests
2023-01-12T13:26:04,309   creating build/lib.linux-armv7l-cpython-39/patato/io/ipasc
2023-01-12T13:26:04,310   copying patato/io/ipasc/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/ipasc
2023-01-12T13:26:04,312   copying patato/io/ipasc/ipasc_export.py -> build/lib.linux-armv7l-cpython-39/patato/io/ipasc
2023-01-12T13:26:04,315   creating build/lib.linux-armv7l-cpython-39/patato/io/json
2023-01-12T13:26:04,316   copying patato/io/json/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/json
2023-01-12T13:26:04,318   copying patato/io/json/json_reading.py -> build/lib.linux-armv7l-cpython-39/patato/io/json
2023-01-12T13:26:04,321   creating build/lib.linux-armv7l-cpython-39/patato/io/simpa
2023-01-12T13:26:04,322   copying patato/io/simpa/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/simpa
2023-01-12T13:26:04,325   copying patato/io/simpa/read_simpa.py -> build/lib.linux-armv7l-cpython-39/patato/io/simpa
2023-01-12T13:26:04,328   creating build/lib.linux-armv7l-cpython-39/patato/io/hdf
2023-01-12T13:26:04,328   copying patato/io/hdf/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/hdf
2023-01-12T13:26:04,331   copying patato/io/hdf/fileimporter.py -> build/lib.linux-armv7l-cpython-39/patato/io/hdf
2023-01-12T13:26:04,334   copying patato/io/hdf/hdf5_interface.py -> build/lib.linux-armv7l-cpython-39/patato/io/hdf
2023-01-12T13:26:04,337   creating build/lib.linux-armv7l-cpython-39/patato/io/ithera/tests
2023-01-12T13:26:04,338   copying patato/io/ithera/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/ithera/tests
2023-01-12T13:26:04,340   copying patato/io/ithera/tests/ithera_tests.py -> build/lib.linux-armv7l-cpython-39/patato/io/ithera/tests
2023-01-12T13:26:04,343   creating build/lib.linux-armv7l-cpython-39/patato/io/json/tests
2023-01-12T13:26:04,344   copying patato/io/json/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/json/tests
2023-01-12T13:26:04,346   copying patato/io/json/tests/test_reconstruction_reading.py -> build/lib.linux-armv7l-cpython-39/patato/io/json/tests
2023-01-12T13:26:04,348   creating build/lib.linux-armv7l-cpython-39/patato/io/hdf/tests
2023-01-12T13:26:04,349   copying patato/io/hdf/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/io/hdf/tests
2023-01-12T13:26:04,351   copying patato/io/hdf/tests/test_ithera_import_clinical_new.py -> build/lib.linux-armv7l-cpython-39/patato/io/hdf/tests
2023-01-12T13:26:04,354   creating build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,355   copying patato/convenience_scripts/data_analysis/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,357   copying patato/convenience_scripts/data_analysis/analyse_gas_challenge.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,359   copying patato/convenience_scripts/data_analysis/analyse_dce.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,361   copying patato/convenience_scripts/data_analysis/analyse_dce_old.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,363   copying patato/convenience_scripts/data_analysis/functional_analysis.py -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis
2023-01-12T13:26:04,367   creating build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,368   copying patato/core/image_structures/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,370   copying patato/core/image_structures/single_parameter_data.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,372   copying patato/core/image_structures/unmixed_image.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,374   copying patato/core/image_structures/image_sequence.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,377   copying patato/core/image_structures/reconstruction_image.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,379   copying patato/core/image_structures/pa_fourier_data.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,381   copying patato/core/image_structures/image_structure_types.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,383   copying patato/core/image_structures/pa_raw_data.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,385   copying patato/core/image_structures/pa_time_data.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,387   copying patato/core/image_structures/single_image.py -> build/lib.linux-armv7l-cpython-39/patato/core/image_structures
2023-01-12T13:26:04,389   creating build/lib.linux-armv7l-cpython-39/patato/utils/tests
2023-01-12T13:26:04,390   copying patato/utils/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/utils/tests
2023-01-12T13:26:04,393   copying patato/utils/tests/pipline_tests.py -> build/lib.linux-armv7l-cpython-39/patato/utils/tests
2023-01-12T13:26:04,395   creating build/lib.linux-armv7l-cpython-39/patato/utils/rois
2023-01-12T13:26:04,396   copying patato/utils/rois/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/utils/rois
2023-01-12T13:26:04,398   copying patato/utils/rois/roi_type.py -> build/lib.linux-armv7l-cpython-39/patato/utils/rois
2023-01-12T13:26:04,401   creating build/lib.linux-armv7l-cpython-39/patato/unmixing/tests
2023-01-12T13:26:04,402   copying patato/unmixing/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/unmixing/tests
2023-01-12T13:26:04,404   copying patato/unmixing/tests/unmixing_test.py -> build/lib.linux-armv7l-cpython-39/patato/unmixing/tests
2023-01-12T13:26:04,406   creating build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra
2023-01-12T13:26:04,407   copying patato/unmixing/spectra/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra
2023-01-12T13:26:04,411   creating build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,412   copying patato/recon/model_based/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,414   copying patato/recon/model_based/cuda_implementation.py -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,416   copying patato/recon/model_based/model_based.py -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,418   copying patato/recon/model_based/numpy_implementation.py -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,420   copying patato/recon/model_based/cuda_implementation_refraction.py -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,423   creating build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_implementation
2023-01-12T13:26:04,424   copying patato/recon/backprojection_implementation/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_implementation
2023-01-12T13:26:04,426   copying patato/recon/backprojection_implementation/jax_implementation.py -> build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_implementation
2023-01-12T13:26:04,428   creating build/lib.linux-armv7l-cpython-39/patato/recon/tests
2023-01-12T13:26:04,429   copying patato/recon/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/recon/tests
2023-01-12T13:26:04,432   copying patato/recon/tests/backprojection_test.py -> build/lib.linux-armv7l-cpython-39/patato/recon/tests
2023-01-12T13:26:04,434   copying patato/recon/tests/model_based_test.py -> build/lib.linux-armv7l-cpython-39/patato/recon/tests
2023-01-12T13:26:04,437   creating build/lib.linux-armv7l-cpython-39/patato/processing/tests
2023-01-12T13:26:04,438   copying patato/processing/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/patato/processing/tests
2023-01-12T13:26:04,440   copying patato/processing/tests/preprocessing_algorithm.py -> build/lib.linux-armv7l-cpython-39/patato/processing/tests
2023-01-12T13:26:04,442   running egg_info
2023-01-12T13:26:04,452   writing patato.egg-info/PKG-INFO
2023-01-12T13:26:04,454   writing dependency_links to patato.egg-info/dependency_links.txt
2023-01-12T13:26:04,457   writing entry points to patato.egg-info/entry_points.txt
2023-01-12T13:26:04,458   writing requirements to patato.egg-info/requires.txt
2023-01-12T13:26:04,460   writing top-level names to patato.egg-info/top_level.txt
2023-01-12T13:26:04,521   reading manifest file 'patato.egg-info/SOURCES.txt'
2023-01-12T13:26:04,526   adding license file 'LICENSE.md'
2023-01-12T13:26:04,534   writing manifest file 'patato.egg-info/SOURCES.txt'
2023-01-12T13:26:04,545   copying patato/convenience_scripts/run_loads.txt -> build/lib.linux-armv7l-cpython-39/patato/convenience_scripts
2023-01-12T13:26:04,548   creating build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,549   copying patato/unmixing/spectra/spectra_files/ICG.csv -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,552   copying patato/unmixing/spectra/spectra_files/Melanin.csv -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,555   copying patato/unmixing/spectra/spectra_files/lipids.txt -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,557   copying patato/unmixing/spectra/spectra_files/prahl.txt -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,560   copying patato/unmixing/spectra/spectra_files/water.txt -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,563   copying patato/unmixing/spectra/spectra_files/water_long.txt -> build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:04,565   copying patato/recon/model_based/generate_model.cpp -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,568   copying patato/recon/model_based/generate_model_refraction.cpp -> build/lib.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,571   creating build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,572   copying patato/recon/recon_presets/backproject_clinical.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,574   copying patato/recon/recon_presets/backproject_clinical_xy.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,577   copying patato/recon/recon_presets/backproject_clinical_xz.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,579   copying patato/recon/recon_presets/backproject_clinical_yz.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,581   copying patato/recon/recon_presets/backproject_janek.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,583   copying patato/recon/recon_presets/backproject_janek_sos.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,586   copying patato/recon/recon_presets/backproject_noirf.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,588   copying patato/recon/recon_presets/backproject_standard.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,590   copying patato/recon/recon_presets/backproject_standard_sos.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,592   copying patato/recon/recon_presets/backproject_standard_water_correction.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,595   copying patato/recon/recon_presets/backproject_standard_water_correction_new_ithera.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,597   copying patato/recon/recon_presets/backproject_standard_xy.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,599   copying patato/recon/recon_presets/backproject_standard_xz.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,601   copying patato/recon/recon_presets/backproject_standard_yz.json -> build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets
2023-01-12T13:26:04,619   running build_ext
2023-01-12T13:26:04,624   building 'patato.recon.model_based.generate_model_refraction' extension
2023-01-12T13:26:04,625   creating build/temp.linux-armv7l-cpython-39
2023-01-12T13:26:04,626   creating build/temp.linux-armv7l-cpython-39/patato
2023-01-12T13:26:04,626   creating build/temp.linux-armv7l-cpython-39/patato/recon
2023-01-12T13:26:04,627   creating build/temp.linux-armv7l-cpython-39/patato/recon/model_based
2023-01-12T13:26:04,629   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-5gop3g0_/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c patato/recon/model_based/generate_model_refraction.cpp -o build/temp.linux-armv7l-cpython-39/patato/recon/model_based/generate_model_refraction.o -std=c++11
2023-01-12T13:26:09,002   patato/recon/model_based/generate_model_refraction.cpp: In function ‘double get_refraction_point(double, double, double, double, double)’:
2023-01-12T13:26:09,002   patato/recon/model_based/generate_model_refraction.cpp:26:9: warning: variable ‘diverging’ set but not used [-Wunused-but-set-variable]
2023-01-12T13:26:09,002      26 |     int diverging = 0;
2023-01-12T13:26:09,002         |         ^~~~~~~~~
2023-01-12T13:26:28,354   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/patato/recon/model_based/generate_model_refraction.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model_refraction.cpython-39-arm-linux-gnueabihf.so
2023-01-12T13:26:28,818   building 'patato.recon.model_based.generate_model' extension
2023-01-12T13:26:28,819   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-5gop3g0_/overlay/lib/python3.9/site-packages/pybind11/include -I/usr/include/python3.9 -c patato/recon/model_based/generate_model.cpp -o build/temp.linux-armv7l-cpython-39/patato/recon/model_based/generate_model.o -std=c++11
2023-01-12T13:26:52,076   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/patato/recon/model_based/generate_model.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model.cpython-39-arm-linux-gnueabihf.so
2023-01-12T13:26:52,540   installing to build/bdist.linux-armv7l/wheel
2023-01-12T13:26:52,540   running install
2023-01-12T13:26:52,566   running install_lib
2023-01-12T13:26:52,571   creating build/bdist.linux-armv7l
2023-01-12T13:26:52,571   creating build/bdist.linux-armv7l/wheel
2023-01-12T13:26:52,573   creating build/bdist.linux-armv7l/wheel/patato
2023-01-12T13:26:52,574   copying build/lib.linux-armv7l-cpython-39/patato/__init__.py -> build/bdist.linux-armv7l/wheel/patato
2023-01-12T13:26:52,577   creating build/bdist.linux-armv7l/wheel/patato/io
2023-01-12T13:26:52,578   copying build/lib.linux-armv7l-cpython-39/patato/io/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io
2023-01-12T13:26:52,581   creating build/bdist.linux-armv7l/wheel/patato/io/ithera
2023-01-12T13:26:52,582   copying build/lib.linux-armv7l-cpython-39/patato/io/ithera/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/ithera
2023-01-12T13:26:52,585   creating build/bdist.linux-armv7l/wheel/patato/io/ithera/tests
2023-01-12T13:26:52,586   copying build/lib.linux-armv7l-cpython-39/patato/io/ithera/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/ithera/tests
2023-01-12T13:26:52,588   copying build/lib.linux-armv7l-cpython-39/patato/io/ithera/tests/ithera_tests.py -> build/bdist.linux-armv7l/wheel/patato/io/ithera/tests
2023-01-12T13:26:52,590   copying build/lib.linux-armv7l-cpython-39/patato/io/ithera/read_ithera.py -> build/bdist.linux-armv7l/wheel/patato/io/ithera
2023-01-12T13:26:52,593   creating build/bdist.linux-armv7l/wheel/patato/io/tests
2023-01-12T13:26:52,594   copying build/lib.linux-armv7l-cpython-39/patato/io/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/tests
2023-01-12T13:26:52,596   copying build/lib.linux-armv7l-cpython-39/patato/io/tests/test_msot_data.py -> build/bdist.linux-armv7l/wheel/patato/io/tests
2023-01-12T13:26:52,599   creating build/bdist.linux-armv7l/wheel/patato/io/ipasc
2023-01-12T13:26:52,600   copying build/lib.linux-armv7l-cpython-39/patato/io/ipasc/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/ipasc
2023-01-12T13:26:52,602   copying build/lib.linux-armv7l-cpython-39/patato/io/ipasc/ipasc_export.py -> build/bdist.linux-armv7l/wheel/patato/io/ipasc
2023-01-12T13:26:52,605   creating build/bdist.linux-armv7l/wheel/patato/io/json
2023-01-12T13:26:52,606   copying build/lib.linux-armv7l-cpython-39/patato/io/json/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/json
2023-01-12T13:26:52,608   copying build/lib.linux-armv7l-cpython-39/patato/io/json/json_reading.py -> build/bdist.linux-armv7l/wheel/patato/io/json
2023-01-12T13:26:52,611   creating build/bdist.linux-armv7l/wheel/patato/io/json/tests
2023-01-12T13:26:52,612   copying build/lib.linux-armv7l-cpython-39/patato/io/json/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/json/tests
2023-01-12T13:26:52,614   copying build/lib.linux-armv7l-cpython-39/patato/io/json/tests/test_reconstruction_reading.py -> build/bdist.linux-armv7l/wheel/patato/io/json/tests
2023-01-12T13:26:52,616   copying build/lib.linux-armv7l-cpython-39/patato/io/attribute_tags.py -> build/bdist.linux-armv7l/wheel/patato/io
2023-01-12T13:26:52,618   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf5_converter.py -> build/bdist.linux-armv7l/wheel/patato/io
2023-01-12T13:26:52,620   copying build/lib.linux-armv7l-cpython-39/patato/io/msot_data.py -> build/bdist.linux-armv7l/wheel/patato/io
2023-01-12T13:26:52,624   creating build/bdist.linux-armv7l/wheel/patato/io/simpa
2023-01-12T13:26:52,625   copying build/lib.linux-armv7l-cpython-39/patato/io/simpa/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/simpa
2023-01-12T13:26:52,627   copying build/lib.linux-armv7l-cpython-39/patato/io/simpa/read_simpa.py -> build/bdist.linux-armv7l/wheel/patato/io/simpa
2023-01-12T13:26:52,630   creating build/bdist.linux-armv7l/wheel/patato/io/hdf
2023-01-12T13:26:52,631   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/hdf
2023-01-12T13:26:52,633   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf/fileimporter.py -> build/bdist.linux-armv7l/wheel/patato/io/hdf
2023-01-12T13:26:52,636   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf/hdf5_interface.py -> build/bdist.linux-armv7l/wheel/patato/io/hdf
2023-01-12T13:26:52,639   creating build/bdist.linux-armv7l/wheel/patato/io/hdf/tests
2023-01-12T13:26:52,640   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/io/hdf/tests
2023-01-12T13:26:52,642   copying build/lib.linux-armv7l-cpython-39/patato/io/hdf/tests/test_ithera_import_clinical_new.py -> build/bdist.linux-armv7l/wheel/patato/io/hdf/tests
2023-01-12T13:26:52,645   creating build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,646   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/__init__.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,648   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/import_clinical_data.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,650   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/copy_rois.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,654   creating build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,655   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis/__init__.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,657   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis/analyse_gas_challenge.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,659   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis/analyse_dce.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,661   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis/analyse_dce_old.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,663   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/data_analysis/functional_analysis.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts/data_analysis
2023-01-12T13:26:52,666   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/convert_binary_to_hdf5.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,668   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/scan_status.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,670   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/generate_core.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,672   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/view.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,674   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/generate_masks.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,676   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/print_speeds.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,678   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/unmix.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,680   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/tune_speed_of_sound.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,683   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/convert_simpa.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,685   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/run_loads.txt -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,686   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/split_rois.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,688   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/import_ithera_recons.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,691   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/process_msot.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,693   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/rename_scan.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,695   copying build/lib.linux-armv7l-cpython-39/patato/convenience_scripts/draw_roi.py -> build/bdist.linux-armv7l/wheel/patato/convenience_scripts
2023-01-12T13:26:52,698   creating build/bdist.linux-armv7l/wheel/patato/bohndieklab_utilities
2023-01-12T13:26:52,699   copying build/lib.linux-armv7l-cpython-39/patato/bohndieklab_utilities/__init__.py -> build/bdist.linux-armv7l/wheel/patato/bohndieklab_utilities
2023-01-12T13:26:52,702   creating build/bdist.linux-armv7l/wheel/patato/core
2023-01-12T13:26:52,703   copying build/lib.linux-armv7l-cpython-39/patato/core/__init__.py -> build/bdist.linux-armv7l/wheel/patato/core
2023-01-12T13:26:52,705   copying build/lib.linux-armv7l-cpython-39/patato/core/data_array.py -> build/bdist.linux-armv7l/wheel/patato/core
2023-01-12T13:26:52,707   creating build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,708   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/__init__.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,710   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/single_parameter_data.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,712   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/unmixed_image.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,714   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/image_sequence.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,716   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/reconstruction_image.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,718   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/pa_fourier_data.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,720   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/image_structure_types.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,722   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/pa_raw_data.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,724   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/pa_time_data.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,726   copying build/lib.linux-armv7l-cpython-39/patato/core/image_structures/single_image.py -> build/bdist.linux-armv7l/wheel/patato/core/image_structures
2023-01-12T13:26:52,729   creating build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,730   copying build/lib.linux-armv7l-cpython-39/patato/utils/__init__.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,732   copying build/lib.linux-armv7l-cpython-39/patato/utils/run_pipeline.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,734   copying build/lib.linux-armv7l-cpython-39/patato/utils/time_series_analysis.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,736   creating build/bdist.linux-armv7l/wheel/patato/utils/tests
2023-01-12T13:26:52,737   copying build/lib.linux-armv7l-cpython-39/patato/utils/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/utils/tests
2023-01-12T13:26:52,739   copying build/lib.linux-armv7l-cpython-39/patato/utils/tests/pipline_tests.py -> build/bdist.linux-armv7l/wheel/patato/utils/tests
2023-01-12T13:26:52,742   creating build/bdist.linux-armv7l/wheel/patato/utils/rois
2023-01-12T13:26:52,743   copying build/lib.linux-armv7l-cpython-39/patato/utils/rois/__init__.py -> build/bdist.linux-armv7l/wheel/patato/utils/rois
2023-01-12T13:26:52,745   copying build/lib.linux-armv7l-cpython-39/patato/utils/rois/roi_type.py -> build/bdist.linux-armv7l/wheel/patato/utils/rois
2023-01-12T13:26:52,747   copying build/lib.linux-armv7l-cpython-39/patato/utils/mask_operations.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,749   copying build/lib.linux-armv7l-cpython-39/patato/utils/roi_operations.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,751   copying build/lib.linux-armv7l-cpython-39/patato/utils/plotting.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,752   copying build/lib.linux-armv7l-cpython-39/patato/utils/process_study.py -> build/bdist.linux-armv7l/wheel/patato/utils
2023-01-12T13:26:52,755   creating build/bdist.linux-armv7l/wheel/patato/unmixing
2023-01-12T13:26:52,756   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/__init__.py -> build/bdist.linux-armv7l/wheel/patato/unmixing
2023-01-12T13:26:52,758   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/unmixer.py -> build/bdist.linux-armv7l/wheel/patato/unmixing
2023-01-12T13:26:52,761   creating build/bdist.linux-armv7l/wheel/patato/unmixing/tests
2023-01-12T13:26:52,762   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/unmixing/tests
2023-01-12T13:26:52,764   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/tests/unmixing_test.py -> build/bdist.linux-armv7l/wheel/patato/unmixing/tests
2023-01-12T13:26:52,766   creating build/bdist.linux-armv7l/wheel/patato/unmixing/spectra
2023-01-12T13:26:52,767   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/__init__.py -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra
2023-01-12T13:26:52,770   creating build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,771   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/water.txt -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,773   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/lipids.txt -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,775   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/ICG.csv -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,778   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/water_long.txt -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,780   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/Melanin.csv -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,783   copying build/lib.linux-armv7l-cpython-39/patato/unmixing/spectra/spectra_files/prahl.txt -> build/bdist.linux-armv7l/wheel/patato/unmixing/spectra/spectra_files
2023-01-12T13:26:52,786   creating build/bdist.linux-armv7l/wheel/patato/recon
2023-01-12T13:26:52,787   copying build/lib.linux-armv7l-cpython-39/patato/recon/__init__.py -> build/bdist.linux-armv7l/wheel/patato/recon
2023-01-12T13:26:52,789   creating build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,790   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/__init__.py -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,792   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,850   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model.cpp -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,852   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model_refraction.cpp -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,854   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/cuda_implementation.py -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,856   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/model_based.py -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,859   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/generate_model_refraction.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,916   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/numpy_implementation.py -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,918   copying build/lib.linux-armv7l-cpython-39/patato/recon/model_based/cuda_implementation_refraction.py -> build/bdist.linux-armv7l/wheel/patato/recon/model_based
2023-01-12T13:26:52,921   creating build/bdist.linux-armv7l/wheel/patato/recon/backprojection_implementation
2023-01-12T13:26:52,922   copying build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_implementation/__init__.py -> build/bdist.linux-armv7l/wheel/patato/recon/backprojection_implementation
2023-01-12T13:26:52,924   copying build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_implementation/jax_implementation.py -> build/bdist.linux-armv7l/wheel/patato/recon/backprojection_implementation
2023-01-12T13:26:52,926   creating build/bdist.linux-armv7l/wheel/patato/recon/tests
2023-01-12T13:26:52,927   copying build/lib.linux-armv7l-cpython-39/patato/recon/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/recon/tests
2023-01-12T13:26:52,929   copying build/lib.linux-armv7l-cpython-39/patato/recon/tests/backprojection_test.py -> build/bdist.linux-armv7l/wheel/patato/recon/tests
2023-01-12T13:26:52,931   copying build/lib.linux-armv7l-cpython-39/patato/recon/tests/model_based_test.py -> build/bdist.linux-armv7l/wheel/patato/recon/tests
2023-01-12T13:26:52,933   creating build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,934   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_clinical_yz.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,936   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_clinical_xy.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,938   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_xy.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,940   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,942   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_clinical.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,944   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_sos.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,946   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_xz.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,948   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_water_correction_new_ithera.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,950   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_noirf.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,952   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_yz.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,954   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_janek.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,956   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_clinical_xz.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,958   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_standard_water_correction.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,960   copying build/lib.linux-armv7l-cpython-39/patato/recon/recon_presets/backproject_janek_sos.json -> build/bdist.linux-armv7l/wheel/patato/recon/recon_presets
2023-01-12T13:26:52,962   copying build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_reference.py -> build/bdist.linux-armv7l/wheel/patato/recon
2023-01-12T13:26:52,964   copying build/lib.linux-armv7l-cpython-39/patato/recon/reconstruction_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/recon
2023-01-12T13:26:52,966   copying build/lib.linux-armv7l-cpython-39/patato/recon/backprojection_opencl.py -> build/bdist.linux-armv7l/wheel/patato/recon
2023-01-12T13:26:52,969   creating build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,970   copying build/lib.linux-armv7l-cpython-39/patato/processing/__init__.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,973   creating build/bdist.linux-armv7l/wheel/patato/processing/tests
2023-01-12T13:26:52,974   copying build/lib.linux-armv7l-cpython-39/patato/processing/tests/__init__.py -> build/bdist.linux-armv7l/wheel/patato/processing/tests
2023-01-12T13:26:52,976   copying build/lib.linux-armv7l-cpython-39/patato/processing/tests/preprocessing_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/processing/tests
2023-01-12T13:26:52,978   copying build/lib.linux-armv7l-cpython-39/patato/processing/preprocessing_types.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,980   copying build/lib.linux-armv7l-cpython-39/patato/processing/jax_preprocessing_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,982   copying build/lib.linux-armv7l-cpython-39/patato/processing/preprocessing_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,985   copying build/lib.linux-armv7l-cpython-39/patato/processing/gpu_preprocessing_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,987   copying build/lib.linux-armv7l-cpython-39/patato/processing/processing_algorithm.py -> build/bdist.linux-armv7l/wheel/patato/processing
2023-01-12T13:26:52,990   creating build/bdist.linux-armv7l/wheel/patato/data
2023-01-12T13:26:52,990   copying build/lib.linux-armv7l-cpython-39/patato/data/__init__.py -> build/bdist.linux-armv7l/wheel/patato/data
2023-01-12T13:26:52,992   running install_egg_info
2023-01-12T13:26:52,998   Copying patato.egg-info to build/bdist.linux-armv7l/wheel/patato-0.0.2-py3.9.egg-info
2023-01-12T13:26:53,012   running install_scripts
2023-01-12T13:26:53,079   creating build/bdist.linux-armv7l/wheel/patato-0.0.2.dist-info/WHEEL
2023-01-12T13:26:53,083   creating '/tmp/pip-wheel-zp59s0v7/.tmp-zlitmi25/patato-0.0.2-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-01-12T13:26:53,085   adding 'patato/__init__.py'
2023-01-12T13:26:53,088   adding 'patato/bohndieklab_utilities/__init__.py'
2023-01-12T13:26:53,090   adding 'patato/convenience_scripts/__init__.py'
2023-01-12T13:26:53,091   adding 'patato/convenience_scripts/convert_binary_to_hdf5.py'
2023-01-12T13:26:53,093   adding 'patato/convenience_scripts/convert_simpa.py'
2023-01-12T13:26:53,094   adding 'patato/convenience_scripts/copy_rois.py'
2023-01-12T13:26:53,097   adding 'patato/convenience_scripts/draw_roi.py'
2023-01-12T13:26:53,099   adding 'patato/convenience_scripts/generate_core.py'
2023-01-12T13:26:53,100   adding 'patato/convenience_scripts/generate_masks.py'
2023-01-12T13:26:53,102   adding 'patato/convenience_scripts/import_clinical_data.py'
2023-01-12T13:26:53,103   adding 'patato/convenience_scripts/import_ithera_recons.py'
2023-01-12T13:26:53,104   adding 'patato/convenience_scripts/print_speeds.py'
2023-01-12T13:26:53,106   adding 'patato/convenience_scripts/process_msot.py'
2023-01-12T13:26:53,107   adding 'patato/convenience_scripts/rename_scan.py'
2023-01-12T13:26:53,108   adding 'patato/convenience_scripts/run_loads.txt'
2023-01-12T13:26:53,110   adding 'patato/convenience_scripts/scan_status.py'
2023-01-12T13:26:53,111   adding 'patato/convenience_scripts/split_rois.py'
2023-01-12T13:26:53,113   adding 'patato/convenience_scripts/tune_speed_of_sound.py'
2023-01-12T13:26:53,115   adding 'patato/convenience_scripts/unmix.py'
2023-01-12T13:26:53,116   adding 'patato/convenience_scripts/view.py'
2023-01-12T13:26:53,118   adding 'patato/convenience_scripts/data_analysis/__init__.py'
2023-01-12T13:26:53,119   adding 'patato/convenience_scripts/data_analysis/analyse_dce.py'
2023-01-12T13:26:53,121   adding 'patato/convenience_scripts/data_analysis/analyse_dce_old.py'
2023-01-12T13:26:53,123   adding 'patato/convenience_scripts/data_analysis/analyse_gas_challenge.py'
2023-01-12T13:26:53,125   adding 'patato/convenience_scripts/data_analysis/functional_analysis.py'
2023-01-12T13:26:53,127   adding 'patato/core/__init__.py'
2023-01-12T13:26:53,128   adding 'patato/core/data_array.py'
2023-01-12T13:26:53,130   adding 'patato/core/image_structures/__init__.py'
2023-01-12T13:26:53,132   adding 'patato/core/image_structures/image_sequence.py'
2023-01-12T13:26:53,134   adding 'patato/core/image_structures/image_structure_types.py'
2023-01-12T13:26:53,135   adding 'patato/core/image_structures/pa_fourier_data.py'
2023-01-12T13:26:53,136   adding 'patato/core/image_structures/pa_raw_data.py'
2023-01-12T13:26:53,138   adding 'patato/core/image_structures/pa_time_data.py'
2023-01-12T13:26:53,139   adding 'patato/core/image_structures/reconstruction_image.py'
2023-01-12T13:26:53,140   adding 'patato/core/image_structures/single_image.py'
2023-01-12T13:26:53,142   adding 'patato/core/image_structures/single_parameter_data.py'
2023-01-12T13:26:53,143   adding 'patato/core/image_structures/unmixed_image.py'
2023-01-12T13:26:53,145   adding 'patato/data/__init__.py'
2023-01-12T13:26:53,147   adding 'patato/io/__init__.py'
2023-01-12T13:26:53,148   adding 'patato/io/attribute_tags.py'
2023-01-12T13:26:53,150   adding 'patato/io/hdf5_converter.py'
2023-01-12T13:26:53,153   adding 'patato/io/msot_data.py'
2023-01-12T13:26:53,155   adding 'patato/io/hdf/__init__.py'
2023-01-12T13:26:53,157   adding 'patato/io/hdf/fileimporter.py'
2023-01-12T13:26:53,159   adding 'patato/io/hdf/hdf5_interface.py'
2023-01-12T13:26:53,161   adding 'patato/io/hdf/tests/__init__.py'
2023-01-12T13:26:53,163   adding 'patato/io/hdf/tests/test_ithera_import_clinical_new.py'
2023-01-12T13:26:53,164   adding 'patato/io/ipasc/__init__.py'
2023-01-12T13:26:53,166   adding 'patato/io/ipasc/ipasc_export.py'
2023-01-12T13:26:53,168   adding 'patato/io/ithera/__init__.py'
2023-01-12T13:26:53,170   adding 'patato/io/ithera/read_ithera.py'
2023-01-12T13:26:53,172   adding 'patato/io/ithera/tests/__init__.py'
2023-01-12T13:26:53,173   adding 'patato/io/ithera/tests/ithera_tests.py'
2023-01-12T13:26:53,175   adding 'patato/io/json/__init__.py'
2023-01-12T13:26:53,177   adding 'patato/io/json/json_reading.py'
2023-01-12T13:26:53,178   adding 'patato/io/json/tests/__init__.py'
2023-01-12T13:26:53,180   adding 'patato/io/json/tests/test_reconstruction_reading.py'
2023-01-12T13:26:53,182   adding 'patato/io/simpa/__init__.py'
2023-01-12T13:26:53,183   adding 'patato/io/simpa/read_simpa.py'
2023-01-12T13:26:53,185   adding 'patato/io/tests/__init__.py'
2023-01-12T13:26:53,186   adding 'patato/io/tests/test_msot_data.py'
2023-01-12T13:26:53,188   adding 'patato/processing/__init__.py'
2023-01-12T13:26:53,190   adding 'patato/processing/gpu_preprocessing_algorithm.py'
2023-01-12T13:26:53,192   adding 'patato/processing/jax_preprocessing_algorithm.py'
2023-01-12T13:26:53,194   adding 'patato/processing/preprocessing_algorithm.py'
2023-01-12T13:26:53,195   adding 'patato/processing/preprocessing_types.py'
2023-01-12T13:26:53,197   adding 'patato/processing/processing_algorithm.py'
2023-01-12T13:26:53,199   adding 'patato/processing/tests/__init__.py'
2023-01-12T13:26:53,200   adding 'patato/processing/tests/preprocessing_algorithm.py'
2023-01-12T13:26:53,202   adding 'patato/recon/__init__.py'
2023-01-12T13:26:53,204   adding 'patato/recon/backprojection_opencl.py'
2023-01-12T13:26:53,205   adding 'patato/recon/backprojection_reference.py'
2023-01-12T13:26:53,207   adding 'patato/recon/reconstruction_algorithm.py'
2023-01-12T13:26:53,209   adding 'patato/recon/backprojection_implementation/__init__.py'
2023-01-12T13:26:53,210   adding 'patato/recon/backprojection_implementation/jax_implementation.py'
2023-01-12T13:26:53,212   adding 'patato/recon/model_based/__init__.py'
2023-01-12T13:26:53,213   adding 'patato/recon/model_based/cuda_implementation.py'
2023-01-12T13:26:53,215   adding 'patato/recon/model_based/cuda_implementation_refraction.py'
2023-01-12T13:26:53,217   adding 'patato/recon/model_based/generate_model.cpp'
2023-01-12T13:26:53,615   adding 'patato/recon/model_based/generate_model.cpython-39-arm-linux-gnueabihf.so'
2023-01-12T13:26:53,632   adding 'patato/recon/model_based/generate_model_refraction.cpp'
2023-01-12T13:26:54,033   adding 'patato/recon/model_based/generate_model_refraction.cpython-39-arm-linux-gnueabihf.so'
2023-01-12T13:26:54,051   adding 'patato/recon/model_based/model_based.py'
2023-01-12T13:26:54,053   adding 'patato/recon/model_based/numpy_implementation.py'
2023-01-12T13:26:54,055   adding 'patato/recon/recon_presets/backproject_clinical.json'
2023-01-12T13:26:54,056   adding 'patato/recon/recon_presets/backproject_clinical_xy.json'
2023-01-12T13:26:54,058   adding 'patato/recon/recon_presets/backproject_clinical_xz.json'
2023-01-12T13:26:54,059   adding 'patato/recon/recon_presets/backproject_clinical_yz.json'
2023-01-12T13:26:54,060   adding 'patato/recon/recon_presets/backproject_janek.json'
2023-01-12T13:26:54,062   adding 'patato/recon/recon_presets/backproject_janek_sos.json'
2023-01-12T13:26:54,063   adding 'patato/recon/recon_presets/backproject_noirf.json'
2023-01-12T13:26:54,064   adding 'patato/recon/recon_presets/backproject_standard.json'
2023-01-12T13:26:54,066   adding 'patato/recon/recon_presets/backproject_standard_sos.json'
2023-01-12T13:26:54,067   adding 'patato/recon/recon_presets/backproject_standard_water_correction.json'
2023-01-12T13:26:54,068   adding 'patato/recon/recon_presets/backproject_standard_water_correction_new_ithera.json'
2023-01-12T13:26:54,070   adding 'patato/recon/recon_presets/backproject_standard_xy.json'
2023-01-12T13:26:54,071   adding 'patato/recon/recon_presets/backproject_standard_xz.json'
2023-01-12T13:26:54,072   adding 'patato/recon/recon_presets/backproject_standard_yz.json'
2023-01-12T13:26:54,074   adding 'patato/recon/tests/__init__.py'
2023-01-12T13:26:54,076   adding 'patato/recon/tests/backprojection_test.py'
2023-01-12T13:26:54,077   adding 'patato/recon/tests/model_based_test.py'
2023-01-12T13:26:54,079   adding 'patato/unmixing/__init__.py'
2023-01-12T13:26:54,081   adding 'patato/unmixing/unmixer.py'
2023-01-12T13:26:54,083   adding 'patato/unmixing/spectra/__init__.py'
2023-01-12T13:26:54,085   adding 'patato/unmixing/spectra/spectra_files/ICG.csv'
2023-01-12T13:26:54,089   adding 'patato/unmixing/spectra/spectra_files/Melanin.csv'
2023-01-12T13:26:54,092   adding 'patato/unmixing/spectra/spectra_files/lipids.txt'
2023-01-12T13:26:54,094   adding 'patato/unmixing/spectra/spectra_files/prahl.txt'
2023-01-12T13:26:54,095   adding 'patato/unmixing/spectra/spectra_files/water.txt'
2023-01-12T13:26:54,098   adding 'patato/unmixing/spectra/spectra_files/water_long.txt'
2023-01-12T13:26:54,100   adding 'patato/unmixing/tests/__init__.py'
2023-01-12T13:26:54,101   adding 'patato/unmixing/tests/unmixing_test.py'
2023-01-12T13:26:54,103   adding 'patato/utils/__init__.py'
2023-01-12T13:26:54,105   adding 'patato/utils/mask_operations.py'
2023-01-12T13:26:54,106   adding 'patato/utils/plotting.py'
2023-01-12T13:26:54,107   adding 'patato/utils/process_study.py'
2023-01-12T13:26:54,109   adding 'patato/utils/roi_operations.py'
2023-01-12T13:26:54,110   adding 'patato/utils/run_pipeline.py'
2023-01-12T13:26:54,112   adding 'patato/utils/time_series_analysis.py'
2023-01-12T13:26:54,114   adding 'patato/utils/rois/__init__.py'
2023-01-12T13:26:54,115   adding 'patato/utils/rois/roi_type.py'
2023-01-12T13:26:54,117   adding 'patato/utils/tests/__init__.py'
2023-01-12T13:26:54,118   adding 'patato/utils/tests/pipline_tests.py'
2023-01-12T13:26:54,121   adding 'patato-0.0.2.dist-info/LICENSE.md'
2023-01-12T13:26:54,122   adding 'patato-0.0.2.dist-info/METADATA'
2023-01-12T13:26:54,123   adding 'patato-0.0.2.dist-info/WHEEL'
2023-01-12T13:26:54,124   adding 'patato-0.0.2.dist-info/entry_points.txt'
2023-01-12T13:26:54,125   adding 'patato-0.0.2.dist-info/top_level.txt'
2023-01-12T13:26:54,128   adding 'patato-0.0.2.dist-info/RECORD'
2023-01-12T13:26:54,156   removing build/bdist.linux-armv7l/wheel
2023-01-12T13:26:54,363   Building wheel for patato (pyproject.toml): finished with status 'done'
2023-01-12T13:26:54,418   Created wheel for patato: filename=patato-0.0.2-cp39-cp39-linux_armv7l.whl size=1683383 sha256=84a8bc846f302b34f19cf89afe27eee9d634091534e7e87c46981c9ee5ec0348
2023-01-12T13:26:54,419   Stored in directory: /tmp/pip-ephem-wheel-cache-joxuo3ac/wheels/28/cc/d3/634ced86b5bf77ad6d3c71731f3da96d13eb298914448d0421
2023-01-12T13:26:54,436 Successfully built patato
2023-01-12T13:26:54,499 Removed build tracker: '/tmp/pip-build-tracker-4cj4ylnx'