2023-01-12T17:30:24,355 Created temporary directory: /tmp/pip-ephem-wheel-cache-q26uwcp6 2023-01-12T17:30:24,358 Created temporary directory: /tmp/pip-build-tracker-i7sum__f 2023-01-12T17:30:24,358 Initialized build tracking at /tmp/pip-build-tracker-i7sum__f 2023-01-12T17:30:24,358 Created build tracker: /tmp/pip-build-tracker-i7sum__f 2023-01-12T17:30:24,358 Entered build tracker: /tmp/pip-build-tracker-i7sum__f 2023-01-12T17:30:24,359 Created temporary directory: /tmp/pip-wheel-h7_ikdaw 2023-01-12T17:30:24,362 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-12T17:30:24,364 Created temporary directory: /tmp/pip-ephem-wheel-cache-k_jz2g2b 2023-01-12T17:30:24,392 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-12T17:30:24,395 2 location(s) to search for versions of tiledbsoma: 2023-01-12T17:30:24,395 * https://pypi.org/simple/tiledbsoma/ 2023-01-12T17:30:24,395 * https://www.piwheels.org/simple/tiledbsoma/ 2023-01-12T17:30:24,395 Fetching project page and analyzing links: https://pypi.org/simple/tiledbsoma/ 2023-01-12T17:30:24,396 Getting page https://pypi.org/simple/tiledbsoma/ 2023-01-12T17:30:24,397 Found index url https://pypi.org/simple 2023-01-12T17:30:24,452 Fetched page https://pypi.org/simple/tiledbsoma/ as application/vnd.pypi.simple.v1+json 2023-01-12T17:30:24,461 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/17/cd/e72c1a9b453d3e8824e231034dca141507ee3381f3fd291ac4c0f6a61cf9/tiledbsoma-0.1.12-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,461 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/67/5a/59636a176cd73385bddf33289aa093ce041cf5b53f875f07264d133f1865/tiledbsoma-0.1.13-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,461 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/d5/3d/b9f7b26e5f7932815f90fd9b7b57d54f7944794923e68aa94c215cd43ab1/tiledbsoma-0.1.14-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,461 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/8d/9d/36dee86dd82dd3fdcef6af00540afcf829778883362f82f395068d21a5a9/tiledbsoma-0.1.15-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,462 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/c7/41/9cd1b3fac9983dc7bf6af48105ba492dcdb0842f7df229f48401326fa226/tiledbsoma-0.1.16-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,462 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/2b/4c/ffe74edf6c1925d282d5455929a58b16de4f289703993c551745f3cfc752/tiledbsoma-0.1.17-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,462 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/71/9f/fb0d9235d74c17a1551d3bfc5beec42aab76d4702e30ac6327567ccaf936/tiledbsoma-0.1.18-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,462 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/54/6b/56bebb746742cccd31ff05bfb0bf54e5994d70810571ede3b359a73f6e74/tiledbsoma-0.1.19-py3-none-any.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,463 Found link https://files.pythonhosted.org/packages/dd/10/3e5508d90c7c2534013effc73b255a6231db0dac2acf704e82fc928086fa/tiledbsoma-0.1.20.tar.gz (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7), version: 0.1.20 2023-01-12T17:30:24,463 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/b0/b8/0a822f609a9f9f83ee987f1b8e86b7a7c4a7d2d126f28918420d654ebd4d/tiledbsoma-0.5.0a2-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,463 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/99/df/6607eba60987b86371c88d672a605f005d98b59fb46dd8ef4472e0e0b9c4/tiledbsoma-0.5.0a2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,464 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/b9/23/1048f09c6d14b35e8d0162a55752943c52bb5c5dcec7bf2fa21be8a6c431/tiledbsoma-0.5.0a2-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,464 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/39/87/bcc4c046c2bfc5c64f4bcc2b708ea24e810f4e433f4fedd0e9831164308f/tiledbsoma-0.5.0a2-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,464 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/4c/3d/4d8c084ad7e02302d683509fc23a9dc5dde3d0bf1a82dacef2431c2ab28f/tiledbsoma-0.5.0a2-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,464 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/87/7b/ab2c60c71c92dc4a4967590b8337f38f6856409cac88e86d0fdf0d34e861/tiledbsoma-0.5.0a2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,465 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/0d/07/329c17709ba964c0e4c51d293143c335a2032f841a47790ec6aa9041df75/tiledbsoma-0.5.0a2-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,465 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/9a/ff/35ce5960a6905620767e0ed7ff3204fb309b8cffb9892cccded082b35876/tiledbsoma-0.5.0a2-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,465 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/01/35/70bd42b6f36635fd5aba9458a070003d2abca3af2a7ba0287ed5c2af8afd/tiledbsoma-0.5.0a2-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,465 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/f8/e9/4788b8a08887dcda92bf33ee0617070f7694e8740fa3d40282ebb0b72159/tiledbsoma-0.5.0a2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,465 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/97/61/e35b8fef92aac79d5f2cbcce546ff0ce6dbbb8dd4efacc3753355d2bb5d3/tiledbsoma-0.5.0a2-pp37-pypy37_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,466 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/b3/37/201c241d3a86db01f18b7e7f5ce36d5531b9a50af28bd41f09c8d0573fd6/tiledbsoma-0.5.0a2-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,466 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/7b/b7/2638f5e76ef7c88aead7edf88973b58cf565436a87064d05cdf88ed84288/tiledbsoma-0.5.0a2-pp38-pypy38_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,466 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/a2/0d/f8fc5a91143bd8b91cc192ac4cbeee07841c2bc0c543c26ae2b8d2ed4fed/tiledbsoma-0.5.0a2-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,466 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/1d/ec/b40e176da8a82e2cf9cc455a8414a9d44587a10c3de9ec96fc10be55f1d6/tiledbsoma-0.5.0a2-pp39-pypy39_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,467 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/24/4f/ec4da920b1abfd2bb19496f3e56a53b1c54b345293db0673439f253534aa/tiledbsoma-0.5.0a2-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,467 Found link https://files.pythonhosted.org/packages/7b/97/597b842d43b41c3ff31efc6fd0b6df3e26e3e37ffac9ac906f7152be4874/tiledbsoma-0.5.0a2.tar.gz (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7), version: 0.5.0a2 2023-01-12T17:30:24,467 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/93/ca/06f53d2b27ed971ec42c9e3e1fa81b9dc9a442b2e27dc44dd9969db19afd/tiledbsoma-0.5.0a3-cp310-cp310-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,468 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/21/8c/8d4681c3bf4fe3338189eef0988544972e89a4666d5c1152acad298385cd/tiledbsoma-0.5.0a3-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,468 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/a8/8d/684715bd35dffc5ee564899dcda410b5384f97ef7e60161333ee46c7b862/tiledbsoma-0.5.0a3-cp311-cp311-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,468 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/a8/7f/a6939858039db7f03232c790d229e9782648b49cbdb80230693c899fc1b8/tiledbsoma-0.5.0a3-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,468 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/e5/ab/a2c0b08766f934d84386f8805eb5d0f47560882988505093e9521ebe3c6a/tiledbsoma-0.5.0a3-cp37-cp37m-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,468 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/ad/f0/8bce75641a9af296dc86f5c994090046b923235b878df3b15807b7788281/tiledbsoma-0.5.0a3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,469 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/88/bf/dec8b3beef3d02416e76bf2c4dd0cc37156ed56da35ad20975c480f48505/tiledbsoma-0.5.0a3-cp38-cp38-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,469 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/45/59/f98a8e3efef09285cad8e247be7ce31e9f8a0ad0032976b4ffbe11676027/tiledbsoma-0.5.0a3-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,469 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/83/14/0fa0c12ac3cbae4801911700efd42b7ae29f401548948a496cfe34e046f5/tiledbsoma-0.5.0a3-cp39-cp39-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,469 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/45/e9/a47d22252642d4a2410699f9b1f2d27bb9ee25b457dcb81ea0aa93abb81c/tiledbsoma-0.5.0a3-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,470 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/8b/cd/26aa2fb8872dc1373ed8ac738af6d0cc4ff77c76538a53c4c3b2d1cc342e/tiledbsoma-0.5.0a3-pp37-pypy37_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,470 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/4b/ca/da72e40da936a6b602ed795492a5c6a4851e821afd0f363f8adac6fd25fb/tiledbsoma-0.5.0a3-pp37-pypy37_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,470 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/cf/42/1a4c83cba9878fc3d6534bbf4905c9378e4e3b5939a11df574eea7dfec65/tiledbsoma-0.5.0a3-pp38-pypy38_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,470 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/92/9e/9fb8d3cb9e40b688f0e987e0b7fe28074e4114ac431e866b15e94e0dd056/tiledbsoma-0.5.0a3-pp38-pypy38_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,470 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/7c/46/4d75bf04d8ef991c62ea8976a8df99d0d78584b9fc486cd83a15ac702dda/tiledbsoma-0.5.0a3-pp39-pypy39_pp73-macosx_10_14_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,471 Skipping link: No binaries permitted for tiledbsoma: https://files.pythonhosted.org/packages/b7/b7/755720daddf4376e81d31b7bfc6c96eadfc2c6ec8f7083745007158f7ece/tiledbsoma-0.5.0a3-pp39-pypy39_pp73-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,471 Found link https://files.pythonhosted.org/packages/e7/dd/2003c32f6ae591af460300d9336093f824c8e4d9f96bb5dca541fd6def48/tiledbsoma-0.5.0a3.tar.gz (from https://pypi.org/simple/tiledbsoma/) (requires-python:>=3.7), version: 0.5.0a3 2023-01-12T17:30:24,472 Fetching project page and analyzing links: https://www.piwheels.org/simple/tiledbsoma/ 2023-01-12T17:30:24,472 Getting page https://www.piwheels.org/simple/tiledbsoma/ 2023-01-12T17:30:24,473 Found index url https://www.piwheels.org/simple 2023-01-12T17:30:24,646 Fetched page https://www.piwheels.org/simple/tiledbsoma/ as text/html 2023-01-12T17:30:24,648 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.5.0a3-cp39-cp39-linux_armv7l.whl#sha256=d1e5c90a87382cf0540ceced45e5f35b3b8a0fd6b8626ec6f55171353196e09a (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,649 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.5.0a3-cp39-cp39-linux_armv6l.whl#sha256=d1e5c90a87382cf0540ceced45e5f35b3b8a0fd6b8626ec6f55171353196e09a (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,649 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.5.0a3-cp37-cp37m-linux_armv7l.whl#sha256=af2d45873f1ce150a72f53fe610c924ded62cf6ebc96d0fa9cac4836114c6985 (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,649 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.5.0a3-cp37-cp37m-linux_armv6l.whl#sha256=af2d45873f1ce150a72f53fe610c924ded62cf6ebc96d0fa9cac4836114c6985 (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,649 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.1.20-cp37-cp37m-linux_armv7l.whl#sha256=861a89c82999e59d37f333aed2f8384ce4f7481121f2de6e4bfbde1ed741f04d (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,650 Skipping link: No binaries permitted for tiledbsoma: https://www.piwheels.org/simple/tiledbsoma/tiledbsoma-0.1.20-cp37-cp37m-linux_armv6l.whl#sha256=861a89c82999e59d37f333aed2f8384ce4f7481121f2de6e4bfbde1ed741f04d (from https://www.piwheels.org/simple/tiledbsoma/) (requires-python:>=3.7) 2023-01-12T17:30:24,650 Skipping link: not a file: https://www.piwheels.org/simple/tiledbsoma/ 2023-01-12T17:30:24,650 Skipping link: not a file: https://pypi.org/simple/tiledbsoma/ 2023-01-12T17:30:24,668 Given no hashes to check 1 links for project 'tiledbsoma': discarding no candidates 2023-01-12T17:30:24,685 Collecting tiledbsoma==0.1.20 2023-01-12T17:30:24,687 Created temporary directory: /tmp/pip-unpack-gholzmwh 2023-01-12T17:30:24,735 Downloading tiledbsoma-0.1.20.tar.gz (28.2 MB) 2023-01-12T17:30:29,340 Added tiledbsoma==0.1.20 from https://files.pythonhosted.org/packages/dd/10/3e5508d90c7c2534013effc73b255a6231db0dac2acf704e82fc928086fa/tiledbsoma-0.1.20.tar.gz to build tracker '/tmp/pip-build-tracker-i7sum__f' 2023-01-12T17:30:29,349 Created temporary directory: /tmp/pip-build-env-arlno9us 2023-01-12T17:30:29,357 Installing build dependencies: started 2023-01-12T17:30:29,358 Running command pip subprocess to install build dependencies 2023-01-12T17:30:30,583 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-01-12T17:30:31,039 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-12T17:30:31,064 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-12T17:30:31,509 Collecting pybind11[global]>=2.10.0 2023-01-12T17:30:31,541 Using cached https://www.piwheels.org/simple/pybind11/pybind11-2.10.3-py3-none-any.whl (222 kB) 2023-01-12T17:30:32,906 Collecting setuptools>=65.5.1 2023-01-12T17:30:33,070 Using cached https://www.piwheels.org/simple/setuptools/setuptools-65.7.0-py3-none-any.whl (1.2 MB) 2023-01-12T17:30:33,333 Collecting wheel>=0.37.1 2023-01-12T17:30:33,350 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-01-12T17:30:34,069 Collecting cmake>=3.21 2023-01-12T17:30:35,613 Using cached https://www.piwheels.org/simple/cmake/cmake-3.25.0-cp39-cp39-linux_armv7l.whl (17.3 MB) 2023-01-12T17:30:37,402 Collecting pybind11-global==2.10.3 2023-01-12T17:30:37,415 Downloading https://www.piwheels.org/simple/pybind11-global/pybind11_global-2.10.3-py3-none-any.whl (401 kB) 2023-01-12T17:30:37,463 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 401.5/401.5 kB 10.6 MB/s eta 0:00:00 2023-01-12T17:30:40,002 Installing collected packages: cmake, wheel, setuptools, pybind11-global, pybind11 2023-01-12T17:30:46,582 Creating /tmp/pip-build-env-arlno9us/overlay/bin 2023-01-12T17:30:46,584 changing mode of /tmp/pip-build-env-arlno9us/overlay/bin/cmake to 755 2023-01-12T17:30:46,586 changing mode of /tmp/pip-build-env-arlno9us/overlay/bin/cpack to 755 2023-01-12T17:30:46,589 changing mode of /tmp/pip-build-env-arlno9us/overlay/bin/ctest to 755 2023-01-12T17:30:46,874 changing mode of /tmp/pip-build-env-arlno9us/overlay/bin/wheel to 755 2023-01-12T17:30:49,810 changing mode of /tmp/pip-build-env-arlno9us/overlay/bin/pybind11-config to 755 2023-01-12T17:30:49,829 Successfully installed cmake-3.25.0 pybind11-2.10.3 pybind11-global-2.10.3 setuptools-65.7.0 wheel-0.38.4 2023-01-12T17:30:49,846 [notice] A new release of pip available: 22.3 -> 22.3.1 2023-01-12T17:30:49,846 [notice] To update, run: python3 -m pip install --upgrade pip 2023-01-12T17:30:50,153 Installing build dependencies: finished with status 'done' 2023-01-12T17:30:50,159 Getting requirements to build wheel: started 2023-01-12T17:30:50,159 Running command Getting requirements to build wheel 2023-01-12T17:30:51,210 running egg_info 2023-01-12T17:30:51,217 writing src/tiledbsoma.egg-info/PKG-INFO 2023-01-12T17:30:51,219 writing dependency_links to src/tiledbsoma.egg-info/dependency_links.txt 2023-01-12T17:30:51,222 writing requirements to src/tiledbsoma.egg-info/requires.txt 2023-01-12T17:30:51,223 writing top-level names to src/tiledbsoma.egg-info/top_level.txt 2023-01-12T17:30:51,249 reading manifest file 'src/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:30:51,267 reading manifest template 'MANIFEST.in' 2023-01-12T17:30:51,281 no previously-included directories found matching 'dist_links/libtiledbsoma/test/__pycache__' 2023-01-12T17:30:51,288 writing manifest file 'src/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:30:51,419 Getting requirements to build wheel: finished with status 'done' 2023-01-12T17:30:51,430 Created temporary directory: /tmp/pip-modern-metadata-ztf4ynxh 2023-01-12T17:30:51,433 Preparing metadata (pyproject.toml): started 2023-01-12T17:30:51,434 Running command Preparing metadata (pyproject.toml) 2023-01-12T17:30:52,345 running dist_info 2023-01-12T17:30:52,368 creating /tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info 2023-01-12T17:30:52,373 writing /tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/PKG-INFO 2023-01-12T17:30:52,376 writing dependency_links to /tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/dependency_links.txt 2023-01-12T17:30:52,379 writing requirements to /tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/requires.txt 2023-01-12T17:30:52,380 writing top-level names to /tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/top_level.txt 2023-01-12T17:30:52,381 writing manifest file '/tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:30:52,404 reading manifest file '/tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:30:52,408 reading manifest template 'MANIFEST.in' 2023-01-12T17:30:52,416 no previously-included directories found matching 'dist_links/libtiledbsoma/test/__pycache__' 2023-01-12T17:30:52,421 writing manifest file '/tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:30:52,423 creating '/tmp/pip-modern-metadata-ztf4ynxh/tiledbsoma-0.1.20.dist-info' 2023-01-12T17:30:52,596 Preparing metadata (pyproject.toml): finished with status 'done' 2023-01-12T17:30:52,603 Source in /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0 has version 0.1.20, which satisfies requirement tiledbsoma==0.1.20 from https://files.pythonhosted.org/packages/dd/10/3e5508d90c7c2534013effc73b255a6231db0dac2acf704e82fc928086fa/tiledbsoma-0.1.20.tar.gz 2023-01-12T17:30:52,604 Removed tiledbsoma==0.1.20 from https://files.pythonhosted.org/packages/dd/10/3e5508d90c7c2534013effc73b255a6231db0dac2acf704e82fc928086fa/tiledbsoma-0.1.20.tar.gz from build tracker '/tmp/pip-build-tracker-i7sum__f' 2023-01-12T17:30:52,611 Created temporary directory: /tmp/pip-unpack-hgidv1sk 2023-01-12T17:30:52,611 Building wheels for collected packages: tiledbsoma 2023-01-12T17:30:52,616 Created temporary directory: /tmp/pip-wheel-9gcxsphb 2023-01-12T17:30:52,616 Destination directory: /tmp/pip-wheel-9gcxsphb 2023-01-12T17:30:52,619 Building wheel for tiledbsoma (pyproject.toml): started 2023-01-12T17:30:52,620 Running command Building wheel for tiledbsoma (pyproject.toml) 2023-01-12T17:30:53,525 running bdist_wheel 2023-01-12T17:30:53,617 Building Release build 2023-01-12T17:30:53,765 -- Using default install prefix /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF 2023-01-12T17:30:53,765 -- Install prefix is /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. 2023-01-12T17:30:54,045 -- The C compiler identification is GNU 10.2.1 2023-01-12T17:30:54,362 -- The CXX compiler identification is GNU 10.2.1 2023-01-12T17:30:54,417 -- Detecting C compiler ABI info 2023-01-12T17:30:54,796 -- Detecting C compiler ABI info - done 2023-01-12T17:30:54,837 -- Check for working C compiler: /usr/bin/cc - skipped 2023-01-12T17:30:54,839 -- Detecting C compile features 2023-01-12T17:30:54,841 -- Detecting C compile features - done 2023-01-12T17:30:54,862 -- Detecting CXX compiler ABI info 2023-01-12T17:30:55,230 -- Detecting CXX compiler ABI info - done 2023-01-12T17:30:55,276 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-01-12T17:30:55,278 -- Detecting CXX compile features 2023-01-12T17:30:55,280 -- Detecting CXX compile features - done 2023-01-12T17:30:55,287 -- Starting TileDB-SOMA superbuild. 2023-01-12T17:30:55,469 -- Could NOT find TileDB (missing: TileDB_DIR) 2023-01-12T17:30:55,469 -- Adding TileDB as an external project 2023-01-12T17:30:55,617 -- Could NOT find spdlog (missing: spdlog_DIR) 2023-01-12T17:30:55,617 -- Adding spdlog as an external project 2023-01-12T17:30:55,708 -- Not found clang-tidy 2023-01-12T17:30:55,710 -- Not found clang-format 2023-01-12T17:30:55,763 -- Configuring done 2023-01-12T17:30:55,862 -- Generating done 2023-01-12T17:30:55,879 -- Build files have been written to: /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build 2023-01-12T17:30:56,029 gmake: Warning: File 'Makefile' has modification time 0.83 s in the future 2023-01-12T17:30:56,075 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.81 s in the future 2023-01-12T17:30:56,083 gmake[2]: Warning: File 'CMakeFiles/ep_tiledb.dir/progress.make' has modification time 0.8 s in the future 2023-01-12T17:30:56,100 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:30:56,108 gmake[2]: Warning: File 'CMakeFiles/ep_tiledb.dir/progress.make' has modification time 0.77 s in the future 2023-01-12T17:30:56,125 [ 4%] Creating directories for 'ep_tiledb' 2023-01-12T17:30:56,169 [ 8%] Performing download step (download, verify and extract) for 'ep_tiledb' 2023-01-12T17:30:59,040 -- ep_tiledb download command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_tiledb-stamp/ep_tiledb-download-*.log 2023-01-12T17:30:59,071 [ 12%] No update step for 'ep_tiledb' 2023-01-12T17:30:59,119 [ 16%] No patch step for 'ep_tiledb' 2023-01-12T17:30:59,166 [ 20%] No configure step for 'ep_tiledb' 2023-01-12T17:30:59,213 [ 24%] No build step for 'ep_tiledb' 2023-01-12T17:30:59,258 [ 28%] Performing install step for 'ep_tiledb' 2023-01-12T17:31:00,855 [ 32%] No test step for 'ep_tiledb' 2023-01-12T17:31:00,904 [ 36%] Completed 'ep_tiledb' 2023-01-12T17:31:00,944 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:31:00,967 [ 36%] Built target ep_tiledb 2023-01-12T17:31:01,006 gmake[2]: Warning: File 'externals/src/ep_tiledb-stamp/ep_tiledb-done' has modification time 0.95 s in the future 2023-01-12T17:31:01,020 [ 40%] Creating directories for 'ep_spdlog' 2023-01-12T17:31:01,064 [ 44%] Performing download step (download, verify and extract) for 'ep_spdlog' 2023-01-12T17:31:02,171 -- ep_spdlog download command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log 2023-01-12T17:31:02,201 [ 48%] No update step for 'ep_spdlog' 2023-01-12T17:31:02,241 [ 52%] Performing patch step for 'ep_spdlog' 2023-01-12T17:31:02,274 patching file include/spdlog/logger-inl.h 2023-01-12T17:31:02,306 [ 56%] Performing configure step for 'ep_spdlog' 2023-01-12T17:31:04,669 -- ep_spdlog configure command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log 2023-01-12T17:31:04,702 [ 60%] Performing build step for 'ep_spdlog' 2023-01-12T17:31:55,293 -- ep_spdlog build command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log 2023-01-12T17:31:55,327 [ 64%] Performing install step for 'ep_spdlog' 2023-01-12T17:31:56,168 -- ep_spdlog install command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log 2023-01-12T17:31:56,202 [ 68%] Completed 'ep_spdlog' 2023-01-12T17:31:56,241 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:31:56,263 [ 68%] Built target ep_spdlog 2023-01-12T17:31:56,302 gmake[2]: Warning: File 'externals/src/ep_spdlog-stamp/ep_spdlog-done' has modification time 0.95 s in the future 2023-01-12T17:31:56,316 [ 72%] Creating directories for 'libtiledbsoma' 2023-01-12T17:31:56,361 [ 76%] No download step for 'libtiledbsoma' 2023-01-12T17:31:56,405 [ 80%] No update step for 'libtiledbsoma' 2023-01-12T17:31:56,447 [ 84%] No patch step for 'libtiledbsoma' 2023-01-12T17:31:56,488 [ 88%] Performing configure step for 'libtiledbsoma' 2023-01-12T17:31:56,510 -- Using default install prefix /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF 2023-01-12T17:31:56,510 -- Install prefix is /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. 2023-01-12T17:31:56,842 -- The C compiler identification is GNU 10.2.1 2023-01-12T17:31:57,152 -- The CXX compiler identification is GNU 10.2.1 2023-01-12T17:31:57,202 -- Detecting C compiler ABI info 2023-01-12T17:31:57,537 -- Detecting C compiler ABI info - done 2023-01-12T17:31:57,595 -- Check for working C compiler: /usr/bin/cc - skipped 2023-01-12T17:31:57,597 -- Detecting C compile features 2023-01-12T17:31:57,600 -- Detecting C compile features - done 2023-01-12T17:31:57,620 -- Detecting CXX compiler ABI info 2023-01-12T17:31:57,986 -- Detecting CXX compiler ABI info - done 2023-01-12T17:31:58,031 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-01-12T17:31:58,033 -- Detecting CXX compile features 2023-01-12T17:31:58,036 -- Detecting CXX compile features - done 2023-01-12T17:31:58,042 -- Starting TileDB-SOMA regular build. 2023-01-12T17:31:58,048 -- Performing Test HAVE_AVX2 2023-01-12T17:31:58,178 -- Performing Test HAVE_AVX2 - Failed 2023-01-12T17:31:58,186 -- Starting TileDB-SOMA build. 2023-01-12T17:31:58,218 CMake Warning at cmake/Modules/FindTileDB_EP.cmake:35 (find_package): 2023-01-12T17:31:58,218 Could not find a configuration file for package "TileDB" that is compatible 2023-01-12T17:31:58,218 with requested version "". 2023-01-12T17:31:58,219 The following configuration files were considered but not accepted: 2023-01-12T17:31:58,219 /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/install/lib/cmake/TileDB/TileDBConfig.cmake, version: 2.13.0 (64bit) 2023-01-12T17:31:58,219 Call Stack (most recent call first): 2023-01-12T17:31:58,219 src/CMakeLists.txt:9 (find_package) 2023-01-12T17:31:58,220 CMake Error at cmake/Modules/FindTileDB_EP.cmake:115 (message): 2023-01-12T17:31:58,220 Unable to find TileDB library. 2023-01-12T17:31:58,220 Call Stack (most recent call first): 2023-01-12T17:31:58,220 src/CMakeLists.txt:9 (find_package) 2023-01-12T17:31:58,222 -- Configuring incomplete, errors occurred! 2023-01-12T17:31:58,223 See also "/tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/libtiledbsoma/CMakeFiles/CMakeOutput.log". 2023-01-12T17:31:58,223 See also "/tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/libtiledbsoma/CMakeFiles/CMakeError.log". 2023-01-12T17:31:58,235 gmake[2]: *** [CMakeFiles/libtiledbsoma.dir/build.make:94: libtiledbsoma-prefix/src/libtiledbsoma-stamp/libtiledbsoma-configure] Error 1 2023-01-12T17:31:58,236 gmake[1]: *** [CMakeFiles/Makefile2:142: CMakeFiles/libtiledbsoma.dir/all] Error 2 2023-01-12T17:31:58,236 gmake: *** [Makefile:91: all] Error 2 2023-01-12T17:31:58,265 adding to package_data: [] 2023-01-12T17:31:58,265 running build 2023-01-12T17:31:58,265 running build_py 2023-01-12T17:31:58,277 creating build 2023-01-12T17:31:58,277 creating build/lib.linux-armv7l-cpython-39 2023-01-12T17:31:58,278 creating build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,279 copying src/tiledbsoma/metadata_mapping.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,282 copying src/tiledbsoma/io.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,287 copying src/tiledbsoma/general_utilities.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,290 copying src/tiledbsoma/util_iter.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,292 copying src/tiledbsoma/util.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,296 copying src/tiledbsoma/eta.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,299 copying src/tiledbsoma/experiment.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,301 copying src/tiledbsoma/util_arrow.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,305 copying src/tiledbsoma/exception.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,307 copying src/tiledbsoma/factory.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,310 copying src/tiledbsoma/dense_nd_array.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,314 copying src/tiledbsoma/sparse_nd_array.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,317 copying src/tiledbsoma/tiledb_array.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,320 copying src/tiledbsoma/collection.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,323 copying src/tiledbsoma/logging.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,326 copying src/tiledbsoma/_version.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,329 copying src/tiledbsoma/tiledb_object.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,332 copying src/tiledbsoma/util_tiledb.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,335 copying src/tiledbsoma/tiledb_platform_config.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,339 copying src/tiledbsoma/dataframe.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,342 copying src/tiledbsoma/util_scipy.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,344 copying src/tiledbsoma/__init__.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,347 copying src/tiledbsoma/util_ann.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,350 copying src/tiledbsoma/measurement.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,353 copying src/tiledbsoma/constants.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,355 copying src/tiledbsoma/query_condition.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,359 copying src/tiledbsoma/types.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma 2023-01-12T17:31:58,363 creating build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query 2023-01-12T17:31:58,365 copying src/tiledbsoma/experiment_query/query.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query 2023-01-12T17:31:58,369 copying src/tiledbsoma/experiment_query/util.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query 2023-01-12T17:31:58,371 copying src/tiledbsoma/experiment_query/axis.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query 2023-01-12T17:31:58,374 copying src/tiledbsoma/experiment_query/__init__.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query 2023-01-12T17:31:58,378 creating build/lib.linux-armv7l-cpython-39/tiledbsoma/somacore 2023-01-12T17:31:58,380 copying src/tiledbsoma/somacore/data.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/somacore 2023-01-12T17:31:58,382 copying src/tiledbsoma/somacore/__init__.py -> build/lib.linux-armv7l-cpython-39/tiledbsoma/somacore 2023-01-12T17:31:58,387 running build_ext 2023-01-12T17:31:58,427 Building Release build 2023-01-12T17:31:58,860 -- Using default install prefix /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF 2023-01-12T17:31:58,860 -- Install prefix is /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. 2023-01-12T17:31:59,143 -- The C compiler identification is GNU 10.2.1 2023-01-12T17:31:59,529 -- The CXX compiler identification is GNU 10.2.1 2023-01-12T17:31:59,578 -- Detecting C compiler ABI info 2023-01-12T17:31:59,895 -- Detecting C compiler ABI info - done 2023-01-12T17:31:59,938 -- Check for working C compiler: /usr/bin/cc - skipped 2023-01-12T17:31:59,939 -- Detecting C compile features 2023-01-12T17:31:59,941 -- Detecting C compile features - done 2023-01-12T17:31:59,962 -- Detecting CXX compiler ABI info 2023-01-12T17:32:00,403 -- Detecting CXX compiler ABI info - done 2023-01-12T17:32:00,447 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-01-12T17:32:00,449 -- Detecting CXX compile features 2023-01-12T17:32:00,451 -- Detecting CXX compile features - done 2023-01-12T17:32:00,458 -- Starting TileDB-SOMA superbuild. 2023-01-12T17:32:00,502 -- Could NOT find TileDB (missing: TileDB_DIR) 2023-01-12T17:32:00,502 -- Adding TileDB as an external project 2023-01-12T17:32:00,602 -- Could NOT find spdlog (missing: spdlog_DIR) 2023-01-12T17:32:00,603 -- Adding spdlog as an external project 2023-01-12T17:32:00,672 -- Not found clang-tidy 2023-01-12T17:32:00,673 -- Not found clang-format 2023-01-12T17:32:00,726 -- Configuring done 2023-01-12T17:32:00,820 -- Generating done 2023-01-12T17:32:00,838 -- Build files have been written to: /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build 2023-01-12T17:32:00,985 gmake: Warning: File 'Makefile' has modification time 0.84 s in the future 2023-01-12T17:32:01,030 gmake[1]: Warning: File 'CMakeFiles/Makefile2' has modification time 0.81 s in the future 2023-01-12T17:32:01,039 gmake[2]: Warning: File 'CMakeFiles/ep_tiledb.dir/progress.make' has modification time 0.8 s in the future 2023-01-12T17:32:01,056 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:32:01,064 gmake[2]: Warning: File 'CMakeFiles/ep_tiledb.dir/progress.make' has modification time 0.77 s in the future 2023-01-12T17:32:01,082 [ 4%] Creating directories for 'ep_tiledb' 2023-01-12T17:32:01,125 [ 8%] Performing download step (download, verify and extract) for 'ep_tiledb' 2023-01-12T17:32:03,428 -- ep_tiledb download command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_tiledb-stamp/ep_tiledb-download-*.log 2023-01-12T17:32:03,460 [ 12%] No update step for 'ep_tiledb' 2023-01-12T17:32:03,506 [ 16%] No patch step for 'ep_tiledb' 2023-01-12T17:32:03,552 [ 20%] No configure step for 'ep_tiledb' 2023-01-12T17:32:03,600 [ 24%] No build step for 'ep_tiledb' 2023-01-12T17:32:03,647 [ 28%] Performing install step for 'ep_tiledb' 2023-01-12T17:32:05,075 [ 32%] No test step for 'ep_tiledb' 2023-01-12T17:32:05,121 [ 36%] Completed 'ep_tiledb' 2023-01-12T17:32:05,160 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:32:05,180 [ 36%] Built target ep_tiledb 2023-01-12T17:32:05,217 gmake[2]: Warning: File 'externals/src/ep_tiledb-stamp/ep_tiledb-done' has modification time 0.95 s in the future 2023-01-12T17:32:05,231 [ 40%] Creating directories for 'ep_spdlog' 2023-01-12T17:32:05,275 [ 44%] Performing download step (download, verify and extract) for 'ep_spdlog' 2023-01-12T17:32:06,110 -- ep_spdlog download command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-download-*.log 2023-01-12T17:32:06,156 [ 48%] No update step for 'ep_spdlog' 2023-01-12T17:32:06,219 [ 52%] Performing patch step for 'ep_spdlog' 2023-01-12T17:32:06,231 patching file include/spdlog/logger-inl.h 2023-01-12T17:32:06,280 [ 56%] Performing configure step for 'ep_spdlog' 2023-01-12T17:32:08,609 -- ep_spdlog configure command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-configure-*.log 2023-01-12T17:32:08,644 [ 60%] Performing build step for 'ep_spdlog' 2023-01-12T17:32:59,303 -- ep_spdlog build command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-build-*.log 2023-01-12T17:32:59,337 [ 64%] Performing install step for 'ep_spdlog' 2023-01-12T17:33:00,128 -- ep_spdlog install command succeeded. See also /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/src/ep_spdlog-stamp/ep_spdlog-install-*.log 2023-01-12T17:33:00,174 [ 68%] Completed 'ep_spdlog' 2023-01-12T17:33:00,229 gmake[2]: warning: Clock skew detected. Your build may be incomplete. 2023-01-12T17:33:00,258 [ 68%] Built target ep_spdlog 2023-01-12T17:33:00,311 gmake[2]: Warning: File 'externals/src/ep_spdlog-stamp/ep_spdlog-done' has modification time 0.93 s in the future 2023-01-12T17:33:00,331 [ 72%] Creating directories for 'libtiledbsoma' 2023-01-12T17:33:00,399 [ 76%] No download step for 'libtiledbsoma' 2023-01-12T17:33:00,443 [ 80%] No update step for 'libtiledbsoma' 2023-01-12T17:33:00,485 [ 84%] No patch step for 'libtiledbsoma' 2023-01-12T17:33:00,528 [ 88%] Performing configure step for 'libtiledbsoma' 2023-01-12T17:33:00,551 -- Using default install prefix /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. To control CMAKE_INSTALL_PREFIX, set OVERRIDE_INSTALL_PREFIX=OFF 2023-01-12T17:33:00,551 -- Install prefix is /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/dist. 2023-01-12T17:33:00,825 -- The C compiler identification is GNU 10.2.1 2023-01-12T17:33:01,134 -- The CXX compiler identification is GNU 10.2.1 2023-01-12T17:33:01,185 -- Detecting C compiler ABI info 2023-01-12T17:33:01,495 -- Detecting C compiler ABI info - done 2023-01-12T17:33:01,538 -- Check for working C compiler: /usr/bin/cc - skipped 2023-01-12T17:33:01,540 -- Detecting C compile features 2023-01-12T17:33:01,542 -- Detecting C compile features - done 2023-01-12T17:33:01,562 -- Detecting CXX compiler ABI info 2023-01-12T17:33:01,950 -- Detecting CXX compiler ABI info - done 2023-01-12T17:33:01,995 -- Check for working CXX compiler: /usr/bin/c++ - skipped 2023-01-12T17:33:01,996 -- Detecting CXX compile features 2023-01-12T17:33:01,999 -- Detecting CXX compile features - done 2023-01-12T17:33:02,005 -- Starting TileDB-SOMA regular build. 2023-01-12T17:33:02,009 -- Performing Test HAVE_AVX2 2023-01-12T17:33:02,142 -- Performing Test HAVE_AVX2 - Failed 2023-01-12T17:33:02,149 -- Starting TileDB-SOMA build. 2023-01-12T17:33:02,178 CMake Warning at cmake/Modules/FindTileDB_EP.cmake:35 (find_package): 2023-01-12T17:33:02,178 Could not find a configuration file for package "TileDB" that is compatible 2023-01-12T17:33:02,179 with requested version "". 2023-01-12T17:33:02,179 The following configuration files were considered but not accepted: 2023-01-12T17:33:02,179 /tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/externals/install/lib/cmake/TileDB/TileDBConfig.cmake, version: 2.13.0 (64bit) 2023-01-12T17:33:02,179 Call Stack (most recent call first): 2023-01-12T17:33:02,180 src/CMakeLists.txt:9 (find_package) 2023-01-12T17:33:02,180 CMake Error at cmake/Modules/FindTileDB_EP.cmake:115 (message): 2023-01-12T17:33:02,180 Unable to find TileDB library. 2023-01-12T17:33:02,180 Call Stack (most recent call first): 2023-01-12T17:33:02,180 src/CMakeLists.txt:9 (find_package) 2023-01-12T17:33:02,181 -- Configuring incomplete, errors occurred! 2023-01-12T17:33:02,181 See also "/tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/libtiledbsoma/CMakeFiles/CMakeOutput.log". 2023-01-12T17:33:02,181 See also "/tmp/pip-wheel-h7_ikdaw/tiledbsoma_1b998ba37c2c4e7a958af044a568fee0/dist_links/build/libtiledbsoma/CMakeFiles/CMakeError.log". 2023-01-12T17:33:02,192 gmake[2]: *** [CMakeFiles/libtiledbsoma.dir/build.make:94: libtiledbsoma-prefix/src/libtiledbsoma-stamp/libtiledbsoma-configure] Error 1 2023-01-12T17:33:02,192 gmake[1]: *** [CMakeFiles/Makefile2:142: CMakeFiles/libtiledbsoma.dir/all] Error 2 2023-01-12T17:33:02,193 gmake: *** [Makefile:91: all] Error 2 2023-01-12T17:33:02,234 adding to package_data: [] 2023-01-12T17:33:02,234 installing to build/bdist.linux-armv7l/wheel 2023-01-12T17:33:02,234 running install 2023-01-12T17:33:02,260 running install_lib 2023-01-12T17:33:02,268 creating build/bdist.linux-armv7l 2023-01-12T17:33:02,269 creating build/bdist.linux-armv7l/wheel 2023-01-12T17:33:02,271 creating build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,272 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/metadata_mapping.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,274 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/io.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,277 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/general_utilities.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,279 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util_iter.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,281 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,283 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/eta.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,285 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,287 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util_arrow.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,289 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/exception.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,291 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/factory.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,293 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/dense_nd_array.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,295 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/sparse_nd_array.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,298 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/tiledb_array.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,300 creating build/bdist.linux-armv7l/wheel/tiledbsoma/experiment_query 2023-01-12T17:33:02,301 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query/query.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/experiment_query 2023-01-12T17:33:02,304 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query/util.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/experiment_query 2023-01-12T17:33:02,306 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query/axis.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/experiment_query 2023-01-12T17:33:02,308 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/experiment_query/__init__.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/experiment_query 2023-01-12T17:33:02,310 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/collection.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,312 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/logging.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,314 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/_version.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,316 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/tiledb_object.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,318 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util_tiledb.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,321 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/tiledb_platform_config.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,323 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/dataframe.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,325 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util_scipy.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,327 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/__init__.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,329 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/util_ann.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,331 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/measurement.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,333 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/constants.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,336 creating build/bdist.linux-armv7l/wheel/tiledbsoma/somacore 2023-01-12T17:33:02,336 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/somacore/data.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/somacore 2023-01-12T17:33:02,339 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/somacore/__init__.py -> build/bdist.linux-armv7l/wheel/tiledbsoma/somacore 2023-01-12T17:33:02,340 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/query_condition.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,343 copying build/lib.linux-armv7l-cpython-39/tiledbsoma/types.py -> build/bdist.linux-armv7l/wheel/tiledbsoma 2023-01-12T17:33:02,345 running install_egg_info 2023-01-12T17:33:02,377 running egg_info 2023-01-12T17:33:02,382 writing src/tiledbsoma.egg-info/PKG-INFO 2023-01-12T17:33:02,384 writing dependency_links to src/tiledbsoma.egg-info/dependency_links.txt 2023-01-12T17:33:02,385 writing requirements to src/tiledbsoma.egg-info/requires.txt 2023-01-12T17:33:02,387 writing top-level names to src/tiledbsoma.egg-info/top_level.txt 2023-01-12T17:33:02,402 reading manifest file 'src/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:33:02,421 reading manifest template 'MANIFEST.in' 2023-01-12T17:33:02,512 no previously-included directories found matching 'dist_links/libtiledbsoma/test/__pycache__' 2023-01-12T17:33:02,543 writing manifest file 'src/tiledbsoma.egg-info/SOURCES.txt' 2023-01-12T17:33:02,547 Copying src/tiledbsoma.egg-info to build/bdist.linux-armv7l/wheel/tiledbsoma-0.1.20-py3.9.egg-info 2023-01-12T17:33:02,561 running install_scripts 2023-01-12T17:33:02,699 creating build/bdist.linux-armv7l/wheel/tiledbsoma-0.1.20.dist-info/WHEEL 2023-01-12T17:33:02,704 creating '/tmp/pip-wheel-9gcxsphb/.tmp-_9zrzrh3/tiledbsoma-0.1.20-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-12T17:33:02,707 adding 'tiledbsoma/__init__.py' 2023-01-12T17:33:02,709 adding 'tiledbsoma/_version.py' 2023-01-12T17:33:02,713 adding 'tiledbsoma/collection.py' 2023-01-12T17:33:02,714 adding 'tiledbsoma/constants.py' 2023-01-12T17:33:02,718 adding 'tiledbsoma/dataframe.py' 2023-01-12T17:33:02,720 adding 'tiledbsoma/dense_nd_array.py' 2023-01-12T17:33:02,722 adding 'tiledbsoma/eta.py' 2023-01-12T17:33:02,724 adding 'tiledbsoma/exception.py' 2023-01-12T17:33:02,726 adding 'tiledbsoma/experiment.py' 2023-01-12T17:33:02,728 adding 'tiledbsoma/factory.py' 2023-01-12T17:33:02,729 adding 'tiledbsoma/general_utilities.py' 2023-01-12T17:33:02,735 adding 'tiledbsoma/io.py' 2023-01-12T17:33:02,737 adding 'tiledbsoma/logging.py' 2023-01-12T17:33:02,739 adding 'tiledbsoma/measurement.py' 2023-01-12T17:33:02,740 adding 'tiledbsoma/metadata_mapping.py' 2023-01-12T17:33:02,742 adding 'tiledbsoma/query_condition.py' 2023-01-12T17:33:02,745 adding 'tiledbsoma/sparse_nd_array.py' 2023-01-12T17:33:02,746 adding 'tiledbsoma/tiledb_array.py' 2023-01-12T17:33:02,748 adding 'tiledbsoma/tiledb_object.py' 2023-01-12T17:33:02,749 adding 'tiledbsoma/tiledb_platform_config.py' 2023-01-12T17:33:02,751 adding 'tiledbsoma/types.py' 2023-01-12T17:33:02,753 adding 'tiledbsoma/util.py' 2023-01-12T17:33:02,754 adding 'tiledbsoma/util_ann.py' 2023-01-12T17:33:02,756 adding 'tiledbsoma/util_arrow.py' 2023-01-12T17:33:02,758 adding 'tiledbsoma/util_iter.py' 2023-01-12T17:33:02,759 adding 'tiledbsoma/util_scipy.py' 2023-01-12T17:33:02,761 adding 'tiledbsoma/util_tiledb.py' 2023-01-12T17:33:02,762 adding 'tiledbsoma/experiment_query/__init__.py' 2023-01-12T17:33:02,764 adding 'tiledbsoma/experiment_query/axis.py' 2023-01-12T17:33:02,767 adding 'tiledbsoma/experiment_query/query.py' 2023-01-12T17:33:02,768 adding 'tiledbsoma/experiment_query/util.py' 2023-01-12T17:33:02,770 adding 'tiledbsoma/somacore/__init__.py' 2023-01-12T17:33:02,771 adding 'tiledbsoma/somacore/data.py' 2023-01-12T17:33:02,774 adding 'tiledbsoma-0.1.20.dist-info/METADATA' 2023-01-12T17:33:02,775 adding 'tiledbsoma-0.1.20.dist-info/WHEEL' 2023-01-12T17:33:02,776 adding 'tiledbsoma-0.1.20.dist-info/top_level.txt' 2023-01-12T17:33:02,777 adding 'tiledbsoma-0.1.20.dist-info/RECORD' 2023-01-12T17:33:02,779 removing build/bdist.linux-armv7l/wheel 2023-01-12T17:33:02,934 Building wheel for tiledbsoma (pyproject.toml): finished with status 'done' 2023-01-12T17:33:02,942 Created wheel for tiledbsoma: filename=tiledbsoma-0.1.20-cp39-cp39-linux_armv7l.whl size=65021 sha256=7935c58e5964631160d6a4923181b30814a8f36621733534631608bc5545b304 2023-01-12T17:33:02,943 Stored in directory: /tmp/pip-ephem-wheel-cache-k_jz2g2b/wheels/11/63/14/b2ee5ae333fc37c30b3dd11eeb4bf99636d03a18dc9b9a1124 2023-01-12T17:33:02,956 Successfully built tiledbsoma 2023-01-12T17:33:02,962 Removed build tracker: '/tmp/pip-build-tracker-i7sum__f'