2023-01-21T17:00:46,048 Created temporary directory: /tmp/pip-ephem-wheel-cache-63olppz0 2023-01-21T17:00:46,053 Created temporary directory: /tmp/pip-build-tracker-hthkbf5r 2023-01-21T17:00:46,054 Initialized build tracking at /tmp/pip-build-tracker-hthkbf5r 2023-01-21T17:00:46,054 Created build tracker: /tmp/pip-build-tracker-hthkbf5r 2023-01-21T17:00:46,054 Entered build tracker: /tmp/pip-build-tracker-hthkbf5r 2023-01-21T17:00:46,056 Created temporary directory: /tmp/pip-wheel-yovdjfg1 2023-01-21T17:00:46,064 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-21T17:00:46,069 Created temporary directory: /tmp/pip-ephem-wheel-cache-4b1tv4if 2023-01-21T17:00:46,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-21T17:00:46,127 2 location(s) to search for versions of ngs-tools: 2023-01-21T17:00:46,127 * https://pypi.org/simple/ngs-tools/ 2023-01-21T17:00:46,127 * https://www.piwheels.org/simple/ngs-tools/ 2023-01-21T17:00:46,128 Fetching project page and analyzing links: https://pypi.org/simple/ngs-tools/ 2023-01-21T17:00:46,129 Getting page https://pypi.org/simple/ngs-tools/ 2023-01-21T17:00:46,133 Found index url https://pypi.org/simple 2023-01-21T17:00:46,374 Fetched page https://pypi.org/simple/ngs-tools/ as application/vnd.pypi.simple.v1+json 2023-01-21T17:00:46,391 Found link https://files.pythonhosted.org/packages/58/80/e31dc09e54b773fbc2638aeafdda2296ee3673ce1e81dc6f88dfa40eb238/ngs-tools-1.1.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.1.2 2023-01-21T17:00:46,393 Found link https://files.pythonhosted.org/packages/1c/e2/3677810459709bec5bd67a2947155b242d40aca25542945e0ebb9f653505/ngs-tools-1.2.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.0 2023-01-21T17:00:46,394 Found link https://files.pythonhosted.org/packages/ed/df/854820831f572781cbfbd27454b2cde9f1cc964f8fb868862e3ddf9108ae/ngs-tools-1.2.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.1 2023-01-21T17:00:46,396 Found link https://files.pythonhosted.org/packages/40/61/ecb4bde3459dc2b2f43ce180c352c64a1583af9b4878b9256b8aecc9fc8a/ngs-tools-1.2.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.2.2 2023-01-21T17:00:46,397 Found link https://files.pythonhosted.org/packages/44/90/69de577e208acc8c11b8072d7de7f82964cb3c23f79719cc4ad1899d6097/ngs-tools-1.2.3.tar.gz (from 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https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.9 2023-01-21T17:00:46,416 Found link https://files.pythonhosted.org/packages/b7/0f/149f474915e6e46779f5ef32e1afaf46605291458e41ab3448217062db00/ngs-tools-1.5.10.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.10 2023-01-21T17:00:46,418 Found link https://files.pythonhosted.org/packages/41/8e/77e1a873ddc57f7d0b6bb128eeb647260d0223b23ee908458d389222bcbf/ngs-tools-1.5.11.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.11 2023-01-21T17:00:46,419 Found link https://files.pythonhosted.org/packages/49/81/85de81b35cebfd7b53b0c61a1b4d19ecbedf8e3fa147997e89051ee53e5f/ngs-tools-1.5.12.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.5.12 2023-01-21T17:00:46,420 Found link https://files.pythonhosted.org/packages/d8/e3/75bbaf6215c2392dc9515dd3c4275145a3c4ba8df09e96c0a5ea4cd35090/ngs-tools-1.5.13.tar.gz (from 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https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.1 2023-01-21T17:00:46,428 Found link https://files.pythonhosted.org/packages/b0/74/df19803c4da47d6b3695f4354fe50506a463c865ec64ef3e8acac8910981/ngs-tools-1.7.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.2 2023-01-21T17:00:46,429 Found link https://files.pythonhosted.org/packages/91/0e/8b63071a3b3dee87506483aaa5717ec0ab9bff0a09189577e5417538e43f/ngs-tools-1.7.3.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.7.3 2023-01-21T17:00:46,430 Found link https://files.pythonhosted.org/packages/58/61/8b0644f718919404c3ee816166210bd2dce3465499179be0c730e14280ca/ngs-tools-1.8.0.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.0 2023-01-21T17:00:46,432 Found link https://files.pythonhosted.org/packages/61/9e/e3742d32a050d8d1455653562cd082caa8645aad2310e880ef9cffcce16a/ngs-tools-1.8.1.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.1 2023-01-21T17:00:46,433 Found link https://files.pythonhosted.org/packages/c8/90/9dcfb3e3a7f08fa97aa55bca7a10fd9a9a744faa61af86f2185ef0cdbcaf/ngs-tools-1.8.2.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.2 2023-01-21T17:00:46,435 Found link https://files.pythonhosted.org/packages/ba/20/d1fceb0cb381f556239d601e2b3d9c84216a01fd01e305c16e4724398bf2/ngs-tools-1.8.3.tar.gz (from https://pypi.org/simple/ngs-tools/) (requires-python:>=3.6), version: 1.8.3 2023-01-21T17:00:46,436 Fetching project page and analyzing links: https://www.piwheels.org/simple/ngs-tools/ 2023-01-21T17:00:46,436 Getting page https://www.piwheels.org/simple/ngs-tools/ 2023-01-21T17:00:46,439 Found index url https://www.piwheels.org/simple 2023-01-21T17:00:46,690 Fetched page https://www.piwheels.org/simple/ngs-tools/ as text/html 2023-01-21T17:00:46,714 Skipping link: No binaries permitted for ngs-tools: 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https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.1-py3-none-any.whl#sha256=b454700426dd4dbbc802187a1c9e77e95c5a64a035529cda880c03c7471ad63b (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,727 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.5.0-py3-none-any.whl#sha256=66eed5f69a66f671c00406c785370cd15f237629e263838c17e1c1e9ebd35bf1 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,727 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.4.0-py3-none-any.whl#sha256=043cf74c3a420187c172fce50bbcb9a39baa4473efe511c4d4eaee1915041c43 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,728 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.3.0-py3-none-any.whl#sha256=637c180e653c8cc118967d5fffe8c5e5c72db0681df97b983f940d465d59e7a0 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,728 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.3-py3-none-any.whl#sha256=e4325ca6c2e61038f550ca9e5c513593ba4cdcafd0bb9e56dc9515e3734bde2d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,729 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.2-py3-none-any.whl#sha256=682da6e59007cd48bb3f8c93cb752483e21e6862c377732587e3f19646625c0d (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,729 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.1-py3-none-any.whl#sha256=45796f1aff4813d9efa48859e8b01f0e85358e3f2fc682ffdd190956b3fcf1f2 (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,730 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.2.0-py3-none-any.whl#sha256=60dbcc1c5132c03998766fda20b622a4dce037ed6d7f0a627358e1bad4f4372c (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,730 Skipping link: No binaries permitted for ngs-tools: https://www.piwheels.org/simple/ngs-tools/ngs_tools-1.1.2-py3-none-any.whl#sha256=9b9bd1c9ee9db219e8ec6daf68374a570b1120218a4ef7d7a04ee415d18e05fd (from https://www.piwheels.org/simple/ngs-tools/) (requires-python:>=3.6) 2023-01-21T17:00:46,731 Skipping link: not a file: https://www.piwheels.org/simple/ngs-tools/ 2023-01-21T17:00:46,732 Skipping link: not a file: https://pypi.org/simple/ngs-tools/ 2023-01-21T17:00:46,775 Given no hashes to check 1 links for project 'ngs-tools': discarding no candidates 2023-01-21T17:00:46,806 Collecting ngs-tools==1.8.3 2023-01-21T17:00:46,810 Created temporary directory: /tmp/pip-unpack-m_a56ekp 2023-01-21T17:00:47,211 Downloading ngs-tools-1.8.3.tar.gz (45.2 MB) 2023-01-21T17:01:12,591 Added ngs-tools==1.8.3 from https://files.pythonhosted.org/packages/ba/20/d1fceb0cb381f556239d601e2b3d9c84216a01fd01e305c16e4724398bf2/ngs-tools-1.8.3.tar.gz to build tracker '/tmp/pip-build-tracker-hthkbf5r' 2023-01-21T17:01:12,595 Running setup.py (path:/tmp/pip-wheel-yovdjfg1/ngs-tools_2639c70cf542421a9e23bb5d733e4fa9/setup.py) egg_info for package ngs-tools 2023-01-21T17:01:12,596 Created temporary directory: /tmp/pip-pip-egg-info-zrfqice7 2023-01-21T17:01:12,597 Preparing metadata (setup.py): started 2023-01-21T17:01:12,599 Running command python setup.py egg_info 2023-01-21T17:01:15,504 running egg_info 2023-01-21T17:01:15,509 creating /tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info 2023-01-21T17:01:15,570 writing /tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/PKG-INFO 2023-01-21T17:01:15,575 writing dependency_links to /tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/dependency_links.txt 2023-01-21T17:01:15,579 writing requirements to /tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/requires.txt 2023-01-21T17:01:15,581 writing top-level names to /tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/top_level.txt 2023-01-21T17:01:15,584 writing manifest file '/tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/SOURCES.txt' 2023-01-21T17:01:15,784 reading manifest file '/tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/SOURCES.txt' 2023-01-21T17:01:15,787 reading manifest template 'MANIFEST.in' 2023-01-21T17:01:15,799 adding license file 'LICENSE' 2023-01-21T17:01:15,807 writing manifest file '/tmp/pip-pip-egg-info-zrfqice7/ngs_tools.egg-info/SOURCES.txt' 2023-01-21T17:01:16,012 Preparing metadata (setup.py): finished with status 'done' 2023-01-21T17:01:16,025 Source in /tmp/pip-wheel-yovdjfg1/ngs-tools_2639c70cf542421a9e23bb5d733e4fa9 has version 1.8.3, which satisfies requirement ngs-tools==1.8.3 from https://files.pythonhosted.org/packages/ba/20/d1fceb0cb381f556239d601e2b3d9c84216a01fd01e305c16e4724398bf2/ngs-tools-1.8.3.tar.gz 2023-01-21T17:01:16,027 Removed ngs-tools==1.8.3 from https://files.pythonhosted.org/packages/ba/20/d1fceb0cb381f556239d601e2b3d9c84216a01fd01e305c16e4724398bf2/ngs-tools-1.8.3.tar.gz from build tracker '/tmp/pip-build-tracker-hthkbf5r' 2023-01-21T17:01:16,042 Created temporary directory: /tmp/pip-unpack-amnyhte7 2023-01-21T17:01:16,043 Building wheels for collected packages: ngs-tools 2023-01-21T17:01:16,052 Created temporary directory: /tmp/pip-wheel-gpvv8rup 2023-01-21T17:01:16,053 Building wheel for ngs-tools (setup.py): started 2023-01-21T17:01:16,055 Destination directory: /tmp/pip-wheel-gpvv8rup 2023-01-21T17:01:16,056 Running command python setup.py bdist_wheel 2023-01-21T17:01:18,952 running bdist_wheel 2023-01-21T17:01:19,709 running build 2023-01-21T17:01:19,710 running build_py 2023-01-21T17:01:19,779 creating build 2023-01-21T17:01:19,779 creating build/lib 2023-01-21T17:01:19,781 creating build/lib/ngs_tools 2023-01-21T17:01:19,783 copying ngs_tools/__init__.py -> build/lib/ngs_tools 2023-01-21T17:01:19,786 copying ngs_tools/progress.py -> build/lib/ngs_tools 2023-01-21T17:01:19,789 copying ngs_tools/utils.py -> build/lib/ngs_tools 2023-01-21T17:01:19,795 copying ngs_tools/logging.py -> build/lib/ngs_tools 2023-01-21T17:01:19,799 copying ngs_tools/bam.py -> build/lib/ngs_tools 2023-01-21T17:01:19,804 copying ngs_tools/sequence.py -> build/lib/ngs_tools 2023-01-21T17:01:19,811 creating build/lib/ngs_tools/gtf 2023-01-21T17:01:19,814 copying ngs_tools/gtf/GtfEntry.py -> build/lib/ngs_tools/gtf 2023-01-21T17:01:19,818 copying ngs_tools/gtf/Segment.py -> build/lib/ngs_tools/gtf 2023-01-21T17:01:19,822 copying ngs_tools/gtf/__init__.py -> build/lib/ngs_tools/gtf 2023-01-21T17:01:19,826 copying ngs_tools/gtf/Gtf.py -> build/lib/ngs_tools/gtf 2023-01-21T17:01:19,830 copying ngs_tools/gtf/SegmentCollection.py -> build/lib/ngs_tools/gtf 2023-01-21T17:01:19,836 creating build/lib/ngs_tools/binary 2023-01-21T17:01:19,838 copying ngs_tools/binary/ArgumentValidator.py -> build/lib/ngs_tools/binary 2023-01-21T17:01:19,842 copying ngs_tools/binary/__init__.py -> build/lib/ngs_tools/binary 2023-01-21T17:01:19,845 copying ngs_tools/binary/Argument.py -> build/lib/ngs_tools/binary 2023-01-21T17:01:19,849 copying ngs_tools/binary/Binary.py -> build/lib/ngs_tools/binary 2023-01-21T17:01:19,854 creating build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,856 copying ngs_tools/chemistry/SpatialChemistry.py -> build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,861 copying ngs_tools/chemistry/__init__.py -> build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,865 copying ngs_tools/chemistry/MultimodalChemistry.py -> build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,868 copying ngs_tools/chemistry/Chemistry.py -> build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,874 copying ngs_tools/chemistry/SingleCellChemistry.py -> build/lib/ngs_tools/chemistry 2023-01-21T17:01:19,880 creating build/lib/ngs_tools/fasta 2023-01-21T17:01:19,882 copying ngs_tools/fasta/__init__.py -> build/lib/ngs_tools/fasta 2023-01-21T17:01:19,887 copying ngs_tools/fasta/FastaEntry.py -> build/lib/ngs_tools/fasta 2023-01-21T17:01:19,891 copying ngs_tools/fasta/Fasta.py -> build/lib/ngs_tools/fasta 2023-01-21T17:01:19,896 creating build/lib/ngs_tools/fastq 2023-01-21T17:01:19,898 copying ngs_tools/fastq/__init__.py -> build/lib/ngs_tools/fastq 2023-01-21T17:01:19,903 copying ngs_tools/fastq/Read.py -> build/lib/ngs_tools/fastq 2023-01-21T17:01:19,907 copying ngs_tools/fastq/Fastq.py -> build/lib/ngs_tools/fastq 2023-01-21T17:01:19,911 running egg_info 2023-01-21T17:01:20,062 writing ngs_tools.egg-info/PKG-INFO 2023-01-21T17:01:20,066 writing dependency_links to ngs_tools.egg-info/dependency_links.txt 2023-01-21T17:01:20,071 writing requirements to ngs_tools.egg-info/requires.txt 2023-01-21T17:01:20,074 writing top-level names to ngs_tools.egg-info/top_level.txt 2023-01-21T17:01:20,149 reading manifest file 'ngs_tools.egg-info/SOURCES.txt' 2023-01-21T17:01:20,165 reading manifest template 'MANIFEST.in' 2023-01-21T17:01:20,179 adding license file 'LICENSE' 2023-01-21T17:01:20,193 writing manifest file 'ngs_tools.egg-info/SOURCES.txt' 2023-01-21T17:01:20,200 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'ngs_tools.chemistry.whitelists' as data is deprecated, please list it in `packages`. 2023-01-21T17:01:20,200 !! 2023-01-21T17:01:20,201 ############################ 2023-01-21T17:01:20,202 # Package would be ignored # 2023-01-21T17:01:20,202 ############################ 2023-01-21T17:01:20,202 Python recognizes 'ngs_tools.chemistry.whitelists' as an importable package, 2023-01-21T17:01:20,203 but it is not listed in the `packages` configuration of setuptools. 2023-01-21T17:01:20,203 'ngs_tools.chemistry.whitelists' has been automatically added to the distribution only 2023-01-21T17:01:20,204 because it may contain data files, but this behavior is likely to change 2023-01-21T17:01:20,204 in future versions of setuptools (and therefore is considered deprecated). 2023-01-21T17:01:20,205 Please make sure that 'ngs_tools.chemistry.whitelists' is included as a package by using 2023-01-21T17:01:20,205 the `packages` configuration field or the proper discovery methods 2023-01-21T17:01:20,205 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-21T17:01:20,205 instead of `find_packages(...)`/`find:`). 2023-01-21T17:01:20,206 You can read more about "package discovery" and "data files" on setuptools 2023-01-21T17:01:20,206 documentation page. 2023-01-21T17:01:20,207 !! 2023-01-21T17:01:20,208 check.warn(importable) 2023-01-21T17:01:20,212 creating build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:20,214 copying ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:20,347 copying ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:21,774 copying ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:21,915 copying ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:22,027 copying ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:22,123 copying ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:22,245 copying ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,132 copying ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,327 copying ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,352 copying ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,357 copying ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/lib/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,485 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-21T17:01:23,485 setuptools.SetuptoolsDeprecationWarning, 2023-01-21T17:01:23,550 installing to build/bdist.linux-armv7l/wheel 2023-01-21T17:01:23,551 running install 2023-01-21T17:01:23,614 running install_lib 2023-01-21T17:01:23,683 creating build/bdist.linux-armv7l 2023-01-21T17:01:23,683 creating build/bdist.linux-armv7l/wheel 2023-01-21T17:01:23,687 creating build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:23,689 copying build/lib/ngs_tools/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:23,693 copying build/lib/ngs_tools/progress.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:23,698 creating build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,700 copying build/lib/ngs_tools/gtf/GtfEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,704 copying build/lib/ngs_tools/gtf/Segment.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,708 copying build/lib/ngs_tools/gtf/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,712 copying build/lib/ngs_tools/gtf/Gtf.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,716 copying build/lib/ngs_tools/gtf/SegmentCollection.py -> build/bdist.linux-armv7l/wheel/ngs_tools/gtf 2023-01-21T17:01:23,721 creating build/bdist.linux-armv7l/wheel/ngs_tools/binary 2023-01-21T17:01:23,722 copying build/lib/ngs_tools/binary/ArgumentValidator.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2023-01-21T17:01:23,726 copying build/lib/ngs_tools/binary/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2023-01-21T17:01:23,729 copying build/lib/ngs_tools/binary/Argument.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2023-01-21T17:01:23,733 copying build/lib/ngs_tools/binary/Binary.py -> build/bdist.linux-armv7l/wheel/ngs_tools/binary 2023-01-21T17:01:23,737 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:23,739 copying build/lib/ngs_tools/chemistry/SpatialChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:23,743 copying build/lib/ngs_tools/chemistry/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:23,748 creating build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,749 copying build/lib/ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,753 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,841 copying build/lib/ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,868 copying build/lib/ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:23,988 copying build/lib/ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:24,884 copying build/lib/ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:25,018 copying build/lib/ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:25,712 copying build/lib/ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:25,804 copying build/lib/ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:25,810 copying build/lib/ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:25,903 copying build/lib/ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry/whitelists 2023-01-21T17:01:26,093 copying build/lib/ngs_tools/chemistry/MultimodalChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:26,097 copying build/lib/ngs_tools/chemistry/Chemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:26,102 copying build/lib/ngs_tools/chemistry/SingleCellChemistry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/chemistry 2023-01-21T17:01:26,108 copying build/lib/ngs_tools/utils.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:26,113 copying build/lib/ngs_tools/logging.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:26,117 copying build/lib/ngs_tools/bam.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:26,122 copying build/lib/ngs_tools/sequence.py -> build/bdist.linux-armv7l/wheel/ngs_tools 2023-01-21T17:01:26,130 creating build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2023-01-21T17:01:26,132 copying build/lib/ngs_tools/fasta/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2023-01-21T17:01:26,138 copying build/lib/ngs_tools/fasta/FastaEntry.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2023-01-21T17:01:26,142 copying build/lib/ngs_tools/fasta/Fasta.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fasta 2023-01-21T17:01:26,147 creating build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2023-01-21T17:01:26,150 copying build/lib/ngs_tools/fastq/__init__.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2023-01-21T17:01:26,155 copying build/lib/ngs_tools/fastq/Read.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2023-01-21T17:01:26,159 copying build/lib/ngs_tools/fastq/Fastq.py -> build/bdist.linux-armv7l/wheel/ngs_tools/fastq 2023-01-21T17:01:26,163 running install_egg_info 2023-01-21T17:01:26,240 Copying ngs_tools.egg-info to build/bdist.linux-armv7l/wheel/ngs_tools-1.8.3-py3.7.egg-info 2023-01-21T17:01:26,268 running install_scripts 2023-01-21T17:01:26,435 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-01-21T17:01:26,444 creating build/bdist.linux-armv7l/wheel/ngs_tools-1.8.3.dist-info/WHEEL 2023-01-21T17:01:26,448 creating '/tmp/pip-wheel-gpvv8rup/ngs_tools-1.8.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-21T17:01:26,453 adding 'ngs_tools/__init__.py' 2023-01-21T17:01:26,458 adding 'ngs_tools/bam.py' 2023-01-21T17:01:26,461 adding 'ngs_tools/logging.py' 2023-01-21T17:01:26,463 adding 'ngs_tools/progress.py' 2023-01-21T17:01:26,472 adding 'ngs_tools/sequence.py' 2023-01-21T17:01:26,479 adding 'ngs_tools/utils.py' 2023-01-21T17:01:26,483 adding 'ngs_tools/binary/Argument.py' 2023-01-21T17:01:26,486 adding 'ngs_tools/binary/ArgumentValidator.py' 2023-01-21T17:01:26,489 adding 'ngs_tools/binary/Binary.py' 2023-01-21T17:01:26,491 adding 'ngs_tools/binary/__init__.py' 2023-01-21T17:01:26,498 adding 'ngs_tools/chemistry/Chemistry.py' 2023-01-21T17:01:26,501 adding 'ngs_tools/chemistry/MultimodalChemistry.py' 2023-01-21T17:01:26,504 adding 'ngs_tools/chemistry/SingleCellChemistry.py' 2023-01-21T17:01:26,508 adding 'ngs_tools/chemistry/SpatialChemistry.py' 2023-01-21T17:01:26,510 adding 'ngs_tools/chemistry/__init__.py' 2023-01-21T17:01:27,245 adding 'ngs_tools/chemistry/whitelists/10x_atac_whitelist.txt.gz' 2023-01-21T17:01:32,804 adding 'ngs_tools/chemistry/whitelists/10x_fb_whitelist.txt.gz' 2023-01-21T17:01:33,918 adding 'ngs_tools/chemistry/whitelists/10x_multiome_atac_whitelist.txt.gz' 2023-01-21T17:01:34,660 adding 'ngs_tools/chemistry/whitelists/10x_multiome_gex_whitelist.txt.gz' 2023-01-21T17:01:35,335 adding 'ngs_tools/chemistry/whitelists/10x_version1_whitelist.txt.gz' 2023-01-21T17:01:36,046 adding 'ngs_tools/chemistry/whitelists/10x_version2_whitelist.txt.gz' 2023-01-21T17:01:41,687 adding 'ngs_tools/chemistry/whitelists/10x_version3_whitelist.txt.gz' 2023-01-21T17:01:43,155 adding 'ngs_tools/chemistry/whitelists/BDWTA_whitelist.txt.gz' 2023-01-21T17:01:43,394 adding 'ngs_tools/chemistry/whitelists/indrops_version3_whitelist.txt.gz' 2023-01-21T17:01:43,407 adding 'ngs_tools/chemistry/whitelists/sci_fate_whitelist.txt.gz' 2023-01-21T17:01:43,414 adding 'ngs_tools/chemistry/whitelists/visium_whitelist.txt.gz' 2023-01-21T17:01:43,418 adding 'ngs_tools/fasta/Fasta.py' 2023-01-21T17:01:43,421 adding 'ngs_tools/fasta/FastaEntry.py' 2023-01-21T17:01:43,424 adding 'ngs_tools/fasta/__init__.py' 2023-01-21T17:01:43,428 adding 'ngs_tools/fastq/Fastq.py' 2023-01-21T17:01:43,432 adding 'ngs_tools/fastq/Read.py' 2023-01-21T17:01:43,436 adding 'ngs_tools/fastq/__init__.py' 2023-01-21T17:01:43,439 adding 'ngs_tools/gtf/Gtf.py' 2023-01-21T17:01:43,442 adding 'ngs_tools/gtf/GtfEntry.py' 2023-01-21T17:01:43,445 adding 'ngs_tools/gtf/Segment.py' 2023-01-21T17:01:43,449 adding 'ngs_tools/gtf/SegmentCollection.py' 2023-01-21T17:01:43,452 adding 'ngs_tools/gtf/__init__.py' 2023-01-21T17:01:43,457 adding 'ngs_tools-1.8.3.dist-info/LICENSE' 2023-01-21T17:01:43,459 adding 'ngs_tools-1.8.3.dist-info/METADATA' 2023-01-21T17:01:43,461 adding 'ngs_tools-1.8.3.dist-info/WHEEL' 2023-01-21T17:01:43,463 adding 'ngs_tools-1.8.3.dist-info/top_level.txt' 2023-01-21T17:01:43,466 adding 'ngs_tools-1.8.3.dist-info/RECORD' 2023-01-21T17:01:44,567 removing build/bdist.linux-armv7l/wheel 2023-01-21T17:01:44,882 Building wheel for ngs-tools (setup.py): finished with status 'done' 2023-01-21T17:01:46,215 Created wheel for ngs-tools: filename=ngs_tools-1.8.3-py3-none-any.whl size=45158508 sha256=908786bd9e6982cc82244daa4f308ff2368215c1448624165bab155c3a4a67d9 2023-01-21T17:01:46,218 Stored in directory: /tmp/pip-ephem-wheel-cache-4b1tv4if/wheels/e5/4c/fe/c9dc4e13847172534371b323d5803ee20875be8cff283f4bc9 2023-01-21T17:01:46,297 Successfully built ngs-tools 2023-01-21T17:01:49,112 Removed build tracker: '/tmp/pip-build-tracker-hthkbf5r'