2023-01-29T23:21:16,809 Created temporary directory: /tmp/pip-ephem-wheel-cache-y1xcwlyd 2023-01-29T23:21:16,811 Created temporary directory: /tmp/pip-build-tracker-w_a_dj76 2023-01-29T23:21:16,811 Initialized build tracking at /tmp/pip-build-tracker-w_a_dj76 2023-01-29T23:21:16,812 Created build tracker: /tmp/pip-build-tracker-w_a_dj76 2023-01-29T23:21:16,812 Entered build tracker: /tmp/pip-build-tracker-w_a_dj76 2023-01-29T23:21:16,812 Created temporary directory: /tmp/pip-wheel-m6bfbr8z 2023-01-29T23:21:16,815 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-29T23:21:16,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-9xqgusxa 2023-01-29T23:21:16,845 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-29T23:21:16,848 2 location(s) to search for versions of funid: 2023-01-29T23:21:16,848 * https://pypi.org/simple/funid/ 2023-01-29T23:21:16,848 * https://www.piwheels.org/simple/funid/ 2023-01-29T23:21:16,849 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-01-29T23:21:16,849 Getting page https://pypi.org/simple/funid/ 2023-01-29T23:21:16,850 Found index url https://pypi.org/simple 2023-01-29T23:21:16,903 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-01-29T23:21:16,904 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-01-29T23:21:16,905 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-01-29T23:21:16,905 Getting page https://www.piwheels.org/simple/funid/ 2023-01-29T23:21:16,906 Found index url https://www.piwheels.org/simple 2023-01-29T23:21:17,121 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-01-29T23:21:17,122 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-01-29T23:21:17,123 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-01-29T23:21:17,140 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-01-29T23:21:17,157 Collecting funid==0.3.0 2023-01-29T23:21:17,159 Created temporary directory: /tmp/pip-unpack-5s1l_ljh 2023-01-29T23:21:17,806 Downloading FunID-0.3.0.tar.gz (89.8 MB) 2023-01-29T23:22:02,601 Added funid==0.3.0 from https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-w_a_dj76' 2023-01-29T23:22:02,603 Running setup.py (path:/tmp/pip-wheel-m6bfbr8z/funid_cdae8875a5cd4ca891daaff44bd311f4/setup.py) egg_info for package funid 2023-01-29T23:22:02,603 Created temporary directory: /tmp/pip-pip-egg-info-egqzm26v 2023-01-29T23:22:02,604 Preparing metadata (setup.py): started 2023-01-29T23:22:02,605 Running command python setup.py egg_info 2023-01-29T23:22:03,768 {'name': 'FunID', 'version': '0.3.0', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID-dev', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-01-29T23:22:03,768 running egg_info 2023-01-29T23:22:03,770 creating /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info 2023-01-29T23:22:03,799 writing /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/PKG-INFO 2023-01-29T23:22:03,801 writing dependency_links to /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/dependency_links.txt 2023-01-29T23:22:03,803 writing entry points to /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/entry_points.txt 2023-01-29T23:22:03,804 writing requirements to /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/requires.txt 2023-01-29T23:22:03,805 writing top-level names to /tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/top_level.txt 2023-01-29T23:22:03,807 writing manifest file '/tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/SOURCES.txt' 2023-01-29T23:22:03,907 reading manifest file '/tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/SOURCES.txt' 2023-01-29T23:22:03,911 writing manifest file '/tmp/pip-pip-egg-info-egqzm26v/FunID.egg-info/SOURCES.txt' 2023-01-29T23:22:04,028 Preparing metadata (setup.py): finished with status 'done' 2023-01-29T23:22:04,034 Source in /tmp/pip-wheel-m6bfbr8z/funid_cdae8875a5cd4ca891daaff44bd311f4 has version 0.3.0, which satisfies requirement funid==0.3.0 from https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz 2023-01-29T23:22:04,034 Removed funid==0.3.0 from https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-w_a_dj76' 2023-01-29T23:22:04,041 Created temporary directory: /tmp/pip-unpack-yooodkcq 2023-01-29T23:22:04,042 Building wheels for collected packages: funid 2023-01-29T23:22:04,047 Created temporary directory: /tmp/pip-wheel-msrnfpj0 2023-01-29T23:22:04,047 Building wheel for funid (setup.py): started 2023-01-29T23:22:04,048 Destination directory: /tmp/pip-wheel-msrnfpj0 2023-01-29T23:22:04,048 Running command python setup.py bdist_wheel 2023-01-29T23:22:04,951 {'name': 'FunID', 'version': '0.3.0', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID-dev', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-01-29T23:22:05,239 running bdist_wheel 2023-01-29T23:22:05,695 running build 2023-01-29T23:22:05,696 running build_py 2023-01-29T23:22:05,729 creating build 2023-01-29T23:22:05,729 creating build/lib 2023-01-29T23:22:05,730 creating build/lib/funid 2023-01-29T23:22:05,731 copying funid/FunID_GUI.py -> build/lib/funid 2023-01-29T23:22:05,734 copying funid/main.py -> build/lib/funid 2023-01-29T23:22:05,736 copying funid/__init__.py -> build/lib/funid 2023-01-29T23:22:05,739 creating build/lib/funid/src 2023-01-29T23:22:05,740 copying funid/src/cluster.py -> build/lib/funid/src 2023-01-29T23:22:05,742 copying funid/src/modeltest.py -> build/lib/funid/src 2023-01-29T23:22:05,745 copying funid/src/multigene.py -> build/lib/funid/src 2023-01-29T23:22:05,747 copying funid/src/logics.py -> build/lib/funid/src 2023-01-29T23:22:05,749 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-01-29T23:22:05,751 copying funid/src/ncbi.py -> build/lib/funid/src 2023-01-29T23:22:05,753 copying funid/src/reporter.py -> build/lib/funid/src 2023-01-29T23:22:05,756 copying funid/src/manage_input.py -> build/lib/funid/src 2023-01-29T23:22:05,759 copying funid/src/logger.py -> build/lib/funid/src 2023-01-29T23:22:05,761 copying funid/src/save.py -> build/lib/funid/src 2023-01-29T23:22:05,763 copying funid/src/hasher.py -> build/lib/funid/src 2023-01-29T23:22:05,765 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-01-29T23:22:05,767 copying funid/src/tree.py -> build/lib/funid/src 2023-01-29T23:22:05,769 copying funid/src/ext.py -> build/lib/funid/src 2023-01-29T23:22:05,772 copying funid/src/validate_option.py -> build/lib/funid/src 2023-01-29T23:22:05,775 copying funid/src/patch.py -> build/lib/funid/src 2023-01-29T23:22:05,777 copying funid/src/trim.py -> build/lib/funid/src 2023-01-29T23:22:05,779 copying funid/src/dataset.py -> build/lib/funid/src 2023-01-29T23:22:05,782 copying funid/src/__init__.py -> build/lib/funid/src 2023-01-29T23:22:05,783 copying funid/src/visualize.py -> build/lib/funid/src 2023-01-29T23:22:05,785 copying funid/src/tool.py -> build/lib/funid/src 2023-01-29T23:22:05,787 copying funid/src/validation.py -> build/lib/funid/src 2023-01-29T23:22:05,789 copying funid/src/search.py -> build/lib/funid/src 2023-01-29T23:22:05,792 copying funid/src/initialize.py -> build/lib/funid/src 2023-01-29T23:22:05,794 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-01-29T23:22:05,797 copying funid/src/command.py -> build/lib/funid/src 2023-01-29T23:22:05,800 copying funid/src/align.py -> build/lib/funid/src 2023-01-29T23:22:05,802 creating build/lib/funid/data 2023-01-29T23:22:05,803 copying funid/data/__init__.py -> build/lib/funid/data 2023-01-29T23:22:05,805 running egg_info 2023-01-29T23:22:05,874 writing FunID.egg-info/PKG-INFO 2023-01-29T23:22:05,875 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-01-29T23:22:05,878 writing entry points to FunID.egg-info/entry_points.txt 2023-01-29T23:22:05,879 writing requirements to FunID.egg-info/requires.txt 2023-01-29T23:22:05,880 writing top-level names to FunID.egg-info/top_level.txt 2023-01-29T23:22:05,919 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-01-29T23:22:05,956 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-01-29T23:22:05,959 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,959 !! 2023-01-29T23:22:05,959 ############################ 2023-01-29T23:22:05,959 # Package would be ignored # 2023-01-29T23:22:05,959 ############################ 2023-01-29T23:22:05,960 Python recognizes 'funid.external' as an importable package, 2023-01-29T23:22:05,960 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,960 'funid.external' has been automatically added to the distribution only 2023-01-29T23:22:05,960 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,960 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,960 Please make sure that 'funid.external' is included as a package by using 2023-01-29T23:22:05,961 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,961 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,961 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,961 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,961 documentation page. 2023-01-29T23:22:05,962 !! 2023-01-29T23:22:05,962 check.warn(importable) 2023-01-29T23:22:05,962 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,962 !! 2023-01-29T23:22:05,962 ############################ 2023-01-29T23:22:05,963 # Package would be ignored # 2023-01-29T23:22:05,963 ############################ 2023-01-29T23:22:05,963 Python recognizes 'funid.external.BLAST_Windows' as an importable package, 2023-01-29T23:22:05,963 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,963 'funid.external.BLAST_Windows' has been automatically added to the distribution only 2023-01-29T23:22:05,963 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,963 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,964 Please make sure that 'funid.external.BLAST_Windows' is included as a package by using 2023-01-29T23:22:05,964 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,964 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,964 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,964 documentation page. 2023-01-29T23:22:05,965 !! 2023-01-29T23:22:05,965 check.warn(importable) 2023-01-29T23:22:05,965 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.bin' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,965 !! 2023-01-29T23:22:05,966 ############################ 2023-01-29T23:22:05,966 # Package would be ignored # 2023-01-29T23:22:05,966 ############################ 2023-01-29T23:22:05,966 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package, 2023-01-29T23:22:05,966 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,966 'funid.external.BLAST_Windows.bin' has been automatically added to the distribution only 2023-01-29T23:22:05,966 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,967 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,967 Please make sure that 'funid.external.BLAST_Windows.bin' is included as a package by using 2023-01-29T23:22:05,967 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,967 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,967 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,967 documentation page. 2023-01-29T23:22:05,968 !! 2023-01-29T23:22:05,968 check.warn(importable) 2023-01-29T23:22:05,968 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.doc' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,968 !! 2023-01-29T23:22:05,969 ############################ 2023-01-29T23:22:05,969 # Package would be ignored # 2023-01-29T23:22:05,969 ############################ 2023-01-29T23:22:05,969 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package, 2023-01-29T23:22:05,969 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,969 'funid.external.BLAST_Windows.doc' has been automatically added to the distribution only 2023-01-29T23:22:05,969 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,970 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,970 Please make sure that 'funid.external.BLAST_Windows.doc' is included as a package by using 2023-01-29T23:22:05,970 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,970 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,970 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,970 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,970 documentation page. 2023-01-29T23:22:05,971 !! 2023-01-29T23:22:05,971 check.warn(importable) 2023-01-29T23:22:05,971 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.FastTree_Windows' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,971 !! 2023-01-29T23:22:05,972 ############################ 2023-01-29T23:22:05,972 # Package would be ignored # 2023-01-29T23:22:05,972 ############################ 2023-01-29T23:22:05,972 Python recognizes 'funid.external.FastTree_Windows' as an importable package, 2023-01-29T23:22:05,972 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,972 'funid.external.FastTree_Windows' has been automatically added to the distribution only 2023-01-29T23:22:05,972 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,972 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,973 Please make sure that 'funid.external.FastTree_Windows' is included as a package by using 2023-01-29T23:22:05,973 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,973 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,973 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,973 documentation page. 2023-01-29T23:22:05,974 !! 2023-01-29T23:22:05,974 check.warn(importable) 2023-01-29T23:22:05,974 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.RAxML_Windows' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,974 !! 2023-01-29T23:22:05,975 ############################ 2023-01-29T23:22:05,975 # Package would be ignored # 2023-01-29T23:22:05,975 ############################ 2023-01-29T23:22:05,975 Python recognizes 'funid.external.RAxML_Windows' as an importable package, 2023-01-29T23:22:05,975 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,975 'funid.external.RAxML_Windows' has been automatically added to the distribution only 2023-01-29T23:22:05,975 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,976 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,976 Please make sure that 'funid.external.RAxML_Windows' is included as a package by using 2023-01-29T23:22:05,976 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,976 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,976 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,976 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,977 documentation page. 2023-01-29T23:22:05,977 !! 2023-01-29T23:22:05,977 check.warn(importable) 2023-01-29T23:22:05,977 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,977 !! 2023-01-29T23:22:05,978 ############################ 2023-01-29T23:22:05,978 # Package would be ignored # 2023-01-29T23:22:05,978 ############################ 2023-01-29T23:22:05,978 Python recognizes 'funid.external.mmseqs_Windows' as an importable package, 2023-01-29T23:22:05,978 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,978 'funid.external.mmseqs_Windows' has been automatically added to the distribution only 2023-01-29T23:22:05,978 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,979 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,979 Please make sure that 'funid.external.mmseqs_Windows' is included as a package by using 2023-01-29T23:22:05,979 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,979 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,979 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,979 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,979 documentation page. 2023-01-29T23:22:05,980 !! 2023-01-29T23:22:05,980 check.warn(importable) 2023-01-29T23:22:05,980 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.bin' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,980 !! 2023-01-29T23:22:05,981 ############################ 2023-01-29T23:22:05,981 # Package would be ignored # 2023-01-29T23:22:05,981 ############################ 2023-01-29T23:22:05,981 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package, 2023-01-29T23:22:05,981 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,981 'funid.external.mmseqs_Windows.bin' has been automatically added to the distribution only 2023-01-29T23:22:05,981 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,981 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,982 Please make sure that 'funid.external.mmseqs_Windows.bin' is included as a package by using 2023-01-29T23:22:05,982 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,982 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,982 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,982 documentation page. 2023-01-29T23:22:05,983 !! 2023-01-29T23:22:05,983 check.warn(importable) 2023-01-29T23:22:05,983 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.matrices' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,983 !! 2023-01-29T23:22:05,983 ############################ 2023-01-29T23:22:05,983 # Package would be ignored # 2023-01-29T23:22:05,984 ############################ 2023-01-29T23:22:05,984 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package, 2023-01-29T23:22:05,984 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,984 'funid.external.mmseqs_Windows.matrices' has been automatically added to the distribution only 2023-01-29T23:22:05,984 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,984 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,985 Please make sure that 'funid.external.mmseqs_Windows.matrices' is included as a package by using 2023-01-29T23:22:05,985 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,985 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,985 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,985 documentation page. 2023-01-29T23:22:05,986 !! 2023-01-29T23:22:05,986 check.warn(importable) 2023-01-29T23:22:05,986 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.util' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,986 !! 2023-01-29T23:22:05,987 ############################ 2023-01-29T23:22:05,987 # Package would be ignored # 2023-01-29T23:22:05,987 ############################ 2023-01-29T23:22:05,987 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package, 2023-01-29T23:22:05,987 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,988 'funid.external.mmseqs_Windows.util' has been automatically added to the distribution only 2023-01-29T23:22:05,988 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,988 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,988 Please make sure that 'funid.external.mmseqs_Windows.util' is included as a package by using 2023-01-29T23:22:05,988 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,988 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,988 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,989 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,989 documentation page. 2023-01-29T23:22:05,989 !! 2023-01-29T23:22:05,989 check.warn(importable) 2023-01-29T23:22:05,990 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,990 !! 2023-01-29T23:22:05,990 ############################ 2023-01-29T23:22:05,990 # Package would be ignored # 2023-01-29T23:22:05,990 ############################ 2023-01-29T23:22:05,990 Python recognizes 'funid.test_dataset.penicillium' as an importable package, 2023-01-29T23:22:05,991 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,991 'funid.test_dataset.penicillium' has been automatically added to the distribution only 2023-01-29T23:22:05,991 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,991 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,991 Please make sure that 'funid.test_dataset.penicillium' is included as a package by using 2023-01-29T23:22:05,991 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,992 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,992 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,993 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,993 documentation page. 2023-01-29T23:22:05,994 !! 2023-01-29T23:22:05,994 check.warn(importable) 2023-01-29T23:22:05,994 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.DB' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,994 !! 2023-01-29T23:22:05,995 ############################ 2023-01-29T23:22:05,995 # Package would be ignored # 2023-01-29T23:22:05,995 ############################ 2023-01-29T23:22:05,995 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package, 2023-01-29T23:22:05,995 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,995 'funid.test_dataset.penicillium.DB' has been automatically added to the distribution only 2023-01-29T23:22:05,996 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,996 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,996 Please make sure that 'funid.test_dataset.penicillium.DB' is included as a package by using 2023-01-29T23:22:05,996 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,996 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,996 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:05,997 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:05,997 documentation page. 2023-01-29T23:22:05,997 !! 2023-01-29T23:22:05,997 check.warn(importable) 2023-01-29T23:22:05,997 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.Query' as data is deprecated, please list it in `packages`. 2023-01-29T23:22:05,997 !! 2023-01-29T23:22:05,998 ############################ 2023-01-29T23:22:05,998 # Package would be ignored # 2023-01-29T23:22:05,998 ############################ 2023-01-29T23:22:05,998 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package, 2023-01-29T23:22:05,998 but it is not listed in the `packages` configuration of setuptools. 2023-01-29T23:22:05,999 'funid.test_dataset.penicillium.Query' has been automatically added to the distribution only 2023-01-29T23:22:05,999 because it may contain data files, but this behavior is likely to change 2023-01-29T23:22:05,999 in future versions of setuptools (and therefore is considered deprecated). 2023-01-29T23:22:05,999 Please make sure that 'funid.test_dataset.penicillium.Query' is included as a package by using 2023-01-29T23:22:05,999 the `packages` configuration field or the proper discovery methods 2023-01-29T23:22:05,999 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-29T23:22:05,999 instead of `find_packages(...)`/`find:`). 2023-01-29T23:22:06,000 You can read more about "package discovery" and "data files" on setuptools 2023-01-29T23:22:06,000 documentation page. 2023-01-29T23:22:06,000 !! 2023-01-29T23:22:06,000 check.warn(importable) 2023-01-29T23:22:06,000 creating build/lib/funid/external 2023-01-29T23:22:06,000 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-01-29T23:22:06,001 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-01-29T23:22:06,469 copying funid/external/__init__.py -> build/lib/funid/external 2023-01-29T23:22:06,470 creating build/lib/funid/external/BLAST_Windows 2023-01-29T23:22:06,471 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-01-29T23:22:06,475 creating build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:06,476 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:06,779 copying funid/external/BLAST_Windows/bin/blastp.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,124 copying funid/external/BLAST_Windows/bin/blastx.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,435 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,438 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,441 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,445 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,661 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,667 copying funid/external/BLAST_Windows/bin/tblastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:07,966 copying funid/external/BLAST_Windows/bin/tblastx.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:08,325 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-01-29T23:22:08,328 creating build/lib/funid/external/BLAST_Windows/doc 2023-01-29T23:22:08,330 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-01-29T23:22:08,332 creating build/lib/funid/external/FastTree_Windows 2023-01-29T23:22:08,333 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-01-29T23:22:08,343 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-01-29T23:22:08,344 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:08,345 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:08,354 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:08,357 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:08,359 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-01-29T23:22:08,361 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-01-29T23:22:08,366 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:08,367 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:08,370 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:08,374 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:08,376 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:08,380 creating build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,381 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,385 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,387 copying funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,418 copying funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,449 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,485 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,514 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,548 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,586 copying funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,618 copying funid/external/RAxML_Windows/raxmlHPC.exe -> build/lib/funid/external/RAxML_Windows 2023-01-29T23:22:08,649 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:08,650 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:08,699 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:08,701 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:08,705 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:08,710 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:08,711 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:08,917 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:09,124 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:09,158 creating build/lib/funid/external/mmseqs_Windows 2023-01-29T23:22:09,158 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-01-29T23:22:09,162 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-01-29T23:22:09,165 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-01-29T23:22:09,167 copying funid/external/mmseqs_Windows/userguide.pdf -> build/lib/funid/external/mmseqs_Windows 2023-01-29T23:22:09,270 creating build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,271 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,287 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,291 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,295 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,303 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,344 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,423 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,428 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:09,683 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,684 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,688 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,690 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,692 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,694 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,696 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,699 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,701 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,703 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,705 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,707 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,709 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,711 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,713 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,716 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,719 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,721 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,723 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,725 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,727 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,729 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,731 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,733 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,736 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,738 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,741 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,743 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,745 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,748 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,750 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,752 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,754 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,757 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,759 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,761 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,763 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,765 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,768 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,770 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,772 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,774 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,776 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:09,779 creating build/lib/funid/external/mmseqs_Windows/util 2023-01-29T23:22:09,779 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-01-29T23:22:09,782 creating build/lib/funid/external/trimal.v1.2rev59 2023-01-29T23:22:09,782 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:09,783 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:09,786 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:09,788 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:09,791 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:09,794 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:09,794 copying funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:09,810 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:09,827 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,828 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,832 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,837 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,841 copying funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,843 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,845 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,847 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,850 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,852 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,854 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,856 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,906 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:09,934 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,934 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,939 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,942 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,977 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,980 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,982 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,987 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,989 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,991 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,995 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:09,997 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,000 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,003 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,005 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,008 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,010 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,012 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,015 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,018 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,020 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,023 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,025 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:10,028 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-01-29T23:22:10,031 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-01-29T23:22:10,034 creating build/lib/funid/test_dataset 2023-01-29T23:22:10,035 creating build/lib/funid/test_dataset/penicillium 2023-01-29T23:22:10,036 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-01-29T23:22:10,039 creating build/lib/funid/test_dataset/penicillium/DB 2023-01-29T23:22:10,039 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-01-29T23:22:10,052 creating build/lib/funid/test_dataset/penicillium/Query 2023-01-29T23:22:10,053 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-01-29T23:22:10,059 creating build/lib/funid/preset 2023-01-29T23:22:10,060 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-01-29T23:22:10,062 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-01-29T23:22:10,102 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-29T23:22:10,102 warnings.warn( 2023-01-29T23:22:10,132 installing to build/bdist.linux-armv7l/wheel 2023-01-29T23:22:10,132 running install 2023-01-29T23:22:10,157 running install_lib 2023-01-29T23:22:10,189 creating build/bdist.linux-armv7l 2023-01-29T23:22:10,190 creating build/bdist.linux-armv7l/wheel 2023-01-29T23:22:10,191 creating build/bdist.linux-armv7l/wheel/funid 2023-01-29T23:22:10,193 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-01-29T23:22:10,194 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-01-29T23:22:10,196 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-01-29T23:22:10,197 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-01-29T23:22:10,202 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-01-29T23:22:10,204 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-01-29T23:22:10,205 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-01-29T23:22:10,216 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-01-29T23:22:10,217 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-01-29T23:22:10,219 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-01-29T23:22:10,221 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-01-29T23:22:10,224 creating build/bdist.linux-armv7l/wheel/funid/external 2023-01-29T23:22:10,225 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-01-29T23:22:10,227 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:10,228 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:10,230 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:10,232 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:10,233 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:10,236 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:10,238 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:10,241 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-01-29T23:22:10,244 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-01-29T23:22:10,245 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-01-29T23:22:10,248 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-01-29T23:22:10,256 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-01-29T23:22:10,257 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-01-29T23:22:10,260 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-01-29T23:22:10,262 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-01-29T23:22:10,265 copying build/lib/funid/external/mmseqs_Windows/userguide.pdf -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-01-29T23:22:10,363 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,364 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,366 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,367 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,369 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,371 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,373 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,375 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,377 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,379 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,381 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,383 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,385 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,386 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,388 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,390 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,392 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,394 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,396 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,398 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,399 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,401 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,403 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,405 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,407 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,409 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,411 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,413 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,415 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,417 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,418 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,420 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,422 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,424 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,426 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,428 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,429 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,431 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,433 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,436 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,438 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,440 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,442 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-01-29T23:22:10,444 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-01-29T23:22:10,445 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-01-29T23:22:10,448 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,449 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,525 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,529 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,545 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,549 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,591 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,598 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,602 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-01-29T23:22:10,857 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-01-29T23:22:10,858 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-01-29T23:22:10,862 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-01-29T23:22:10,863 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-01-29T23:22:10,865 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:10,866 copying build/lib/funid/external/BLAST_Windows/bin/tblastx.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:11,149 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:11,152 copying build/lib/funid/external/BLAST_Windows/bin/tblastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:11,497 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:11,499 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:11,849 copying build/lib/funid/external/BLAST_Windows/bin/blastx.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,153 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,158 copying build/lib/funid/external/BLAST_Windows/bin/blastp.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,454 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,458 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,669 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-01-29T23:22:12,672 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-01-29T23:22:12,673 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-01-29T23:22:12,682 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-01-29T23:22:13,160 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-01-29T23:22:13,163 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-01-29T23:22:13,165 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-01-29T23:22:13,166 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:13,168 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,169 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,172 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,174 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,176 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,178 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,180 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,182 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,184 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,185 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,187 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,191 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,193 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,196 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,198 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,199 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,202 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,204 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,206 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,209 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,212 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,214 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,216 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-01-29T23:22:13,218 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:13,220 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:13,222 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,223 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,248 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,251 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,300 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,307 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,309 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,310 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,312 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,314 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,316 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,317 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,319 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-01-29T23:22:13,322 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:13,323 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-01-29T23:22:13,327 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:13,328 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:13,350 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-01-29T23:22:13,367 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:13,368 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:13,419 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:13,425 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:13,427 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-01-29T23:22:13,431 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:13,431 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:13,462 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:13,667 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-01-29T23:22:13,885 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:13,886 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:13,919 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:13,954 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:13,988 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:13,990 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,020 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,050 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,053 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,083 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,180 copying build/lib/funid/external/RAxML_Windows/raxmlHPC.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-01-29T23:22:14,209 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-01-29T23:22:14,212 creating build/bdist.linux-armv7l/wheel/funid/data 2023-01-29T23:22:14,213 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-01-29T23:22:14,216 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-01-29T23:22:14,218 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-01-29T23:22:14,220 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-01-29T23:22:14,222 creating build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,223 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,225 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,228 copying build/lib/funid/src/multigene.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,230 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,232 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,233 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,235 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,239 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,242 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,243 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,245 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,247 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,249 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,252 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,254 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,258 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,260 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,262 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,264 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,266 copying build/lib/funid/src/visualize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,268 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,271 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,272 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,275 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,277 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,280 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,283 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-01-29T23:22:14,284 running install_egg_info 2023-01-29T23:22:14,319 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.0-py3.9.egg-info 2023-01-29T23:22:14,335 running install_scripts 2023-01-29T23:22:14,497 creating build/bdist.linux-armv7l/wheel/FunID-0.3.0.dist-info/WHEEL 2023-01-29T23:22:14,499 creating '/tmp/pip-wheel-msrnfpj0/FunID-0.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-29T23:22:14,504 adding 'funid/FunID_GUI.py' 2023-01-29T23:22:14,505 adding 'funid/__init__.py' 2023-01-29T23:22:14,507 adding 'funid/main.py' 2023-01-29T23:22:14,511 adding 'funid/data/Option_manager.xlsx' 2023-01-29T23:22:14,512 adding 'funid/data/__init__.py' 2023-01-29T23:22:14,519 adding 'funid/data/genus_line.txt' 2023-01-29T23:22:14,526 adding 'funid/external/MAFFT_LICENSE' 2023-01-29T23:22:17,660 adding 'funid/external/MAFFT_Windows.zip' 2023-01-29T23:22:17,829 adding 'funid/external/__init__.py' 2023-01-29T23:22:17,838 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-01-29T23:22:20,826 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-01-29T23:22:23,917 adding 'funid/external/BLAST_Windows/bin/blastp.exe' 2023-01-29T23:22:27,008 adding 'funid/external/BLAST_Windows/bin/blastx.exe' 2023-01-29T23:22:27,115 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-01-29T23:22:27,117 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-01-29T23:22:27,121 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-01-29T23:22:29,197 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-01-29T23:22:29,297 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-01-29T23:22:32,316 adding 'funid/external/BLAST_Windows/bin/tblastn.exe' 2023-01-29T23:22:35,432 adding 'funid/external/BLAST_Windows/bin/tblastx.exe' 2023-01-29T23:22:35,540 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-01-29T23:22:35,542 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-01-29T23:22:35,599 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-01-29T23:22:35,640 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-01-29T23:22:35,643 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-01-29T23:22:35,644 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-01-29T23:22:35,649 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-01-29T23:22:35,652 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-01-29T23:22:35,654 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-01-29T23:22:35,655 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-01-29T23:22:35,657 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-01-29T23:22:35,664 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-01-29T23:22:35,666 adding 'funid/external/RAxML_Windows/README' 2023-01-29T23:22:35,930 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX.exe' 2023-01-29T23:22:36,202 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX2.exe' 2023-01-29T23:22:36,506 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe' 2023-01-29T23:22:36,811 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-01-29T23:22:37,122 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe' 2023-01-29T23:22:37,423 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe' 2023-01-29T23:22:38,000 adding 'funid/external/RAxML_Windows/raxmlHPC-SSE3.exe' 2023-01-29T23:22:38,269 adding 'funid/external/RAxML_Windows/raxmlHPC.exe' 2023-01-29T23:22:38,361 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-01-29T23:22:38,376 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-01-29T23:22:38,389 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-01-29T23:22:38,418 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-01-29T23:22:40,157 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe' 2023-01-29T23:22:41,955 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-01-29T23:22:42,206 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-01-29T23:22:42,220 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-01-29T23:22:42,222 adding 'funid/external/mmseqs_Windows/README.md' 2023-01-29T23:22:42,223 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-01-29T23:22:42,742 adding 'funid/external/mmseqs_Windows/userguide.pdf' 2023-01-29T23:22:42,901 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-01-29T23:22:42,915 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-01-29T23:22:42,929 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-01-29T23:22:42,972 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-01-29T23:22:43,239 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-01-29T23:22:43,847 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-01-29T23:22:43,884 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-01-29T23:22:47,172 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-01-29T23:22:47,254 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-01-29T23:22:47,255 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-01-29T23:22:47,257 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-01-29T23:22:47,258 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-01-29T23:22:47,259 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-01-29T23:22:47,260 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-01-29T23:22:47,262 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-01-29T23:22:47,263 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-01-29T23:22:47,264 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-01-29T23:22:47,265 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-01-29T23:22:47,267 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-01-29T23:22:47,268 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-01-29T23:22:47,269 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-01-29T23:22:47,271 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-01-29T23:22:47,272 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-01-29T23:22:47,273 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-01-29T23:22:47,275 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-01-29T23:22:47,276 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-01-29T23:22:47,277 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-01-29T23:22:47,279 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-01-29T23:22:47,280 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-01-29T23:22:47,281 adding 'funid/external/mmseqs_Windows/matrices/VTML160.out' 2023-01-29T23:22:47,283 adding 'funid/external/mmseqs_Windows/matrices/VTML20.out' 2023-01-29T23:22:47,284 adding 'funid/external/mmseqs_Windows/matrices/VTML40.out' 2023-01-29T23:22:47,285 adding 'funid/external/mmseqs_Windows/matrices/VTML80.out' 2023-01-29T23:22:47,287 adding 'funid/external/mmseqs_Windows/matrices/blosum100.out' 2023-01-29T23:22:47,288 adding 'funid/external/mmseqs_Windows/matrices/blosum30.out' 2023-01-29T23:22:47,290 adding 'funid/external/mmseqs_Windows/matrices/blosum35.out' 2023-01-29T23:22:47,291 adding 'funid/external/mmseqs_Windows/matrices/blosum40.out' 2023-01-29T23:22:47,293 adding 'funid/external/mmseqs_Windows/matrices/blosum45.out' 2023-01-29T23:22:47,294 adding 'funid/external/mmseqs_Windows/matrices/blosum50.out' 2023-01-29T23:22:47,296 adding 'funid/external/mmseqs_Windows/matrices/blosum55.out' 2023-01-29T23:22:47,297 adding 'funid/external/mmseqs_Windows/matrices/blosum60.out' 2023-01-29T23:22:47,299 adding 'funid/external/mmseqs_Windows/matrices/blosum62.out' 2023-01-29T23:22:47,300 adding 'funid/external/mmseqs_Windows/matrices/blosum65.out' 2023-01-29T23:22:47,302 adding 'funid/external/mmseqs_Windows/matrices/blosum70.out' 2023-01-29T23:22:47,303 adding 'funid/external/mmseqs_Windows/matrices/blosum75.out' 2023-01-29T23:22:47,305 adding 'funid/external/mmseqs_Windows/matrices/blosum80.out' 2023-01-29T23:22:47,306 adding 'funid/external/mmseqs_Windows/matrices/blosum85.out' 2023-01-29T23:22:47,308 adding 'funid/external/mmseqs_Windows/matrices/blosum90.out' 2023-01-29T23:22:47,309 adding 'funid/external/mmseqs_Windows/matrices/blosum95.out' 2023-01-29T23:22:47,310 adding 'funid/external/mmseqs_Windows/matrices/nucleotide.out' 2023-01-29T23:22:47,312 adding 'funid/external/mmseqs_Windows/util/bash-completion.sh' 2023-01-29T23:22:47,314 adding 'funid/external/trimal.v1.2rev59/trimAl/AUTHORS' 2023-01-29T23:22:47,315 adding 'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-01-29T23:22:47,321 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-01-29T23:22:47,323 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-01-29T23:22:47,411 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe' 2023-01-29T23:22:47,506 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-01-29T23:22:47,517 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw' 2023-01-29T23:22:47,524 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl' 2023-01-29T23:22:47,529 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2' 2023-01-29T23:22:47,531 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat' 2023-01-29T23:22:47,532 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw' 2023-01-29T23:22:47,533 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl' 2023-01-29T23:22:47,534 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy' 2023-01-29T23:22:47,535 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1' 2023-01-29T23:22:47,537 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2' 2023-01-29T23:22:47,538 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3' 2023-01-29T23:22:47,729 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2' 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'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp' 2023-01-29T23:22:47,940 adding 'funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h' 2023-01-29T23:22:47,942 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp' 2023-01-29T23:22:47,943 adding 'funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h' 2023-01-29T23:22:47,945 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp' 2023-01-29T23:22:47,947 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h' 2023-01-29T23:22:47,948 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp' 2023-01-29T23:22:47,949 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h' 2023-01-29T23:22:47,952 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp' 2023-01-29T23:22:47,953 adding 'funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h' 2023-01-29T23:22:47,955 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp' 2023-01-29T23:22:47,956 adding 'funid/external/trimal.v1.2rev59/trimAl/source/utils.h' 2023-01-29T23:22:47,958 adding 'funid/external/trimal.v1.2rev59/trimAl/source/values.h' 2023-01-29T23:22:47,960 adding 'funid/preset/accurate.yaml' 2023-01-29T23:22:47,961 adding 'funid/preset/fast.yaml' 2023-01-29T23:22:47,963 adding 'funid/src/__init__.py' 2023-01-29T23:22:47,964 adding 'funid/src/align.py' 2023-01-29T23:22:47,967 adding 'funid/src/cluster.py' 2023-01-29T23:22:47,969 adding 'funid/src/command.py' 2023-01-29T23:22:47,971 adding 'funid/src/dataset.py' 2023-01-29T23:22:47,973 adding 'funid/src/ext.py' 2023-01-29T23:22:47,974 adding 'funid/src/hasher.py' 2023-01-29T23:22:47,976 adding 'funid/src/initialize.py' 2023-01-29T23:22:47,977 adding 'funid/src/logger.py' 2023-01-29T23:22:47,979 adding 'funid/src/logics.py' 2023-01-29T23:22:47,982 adding 'funid/src/manage_input.py' 2023-01-29T23:22:47,984 adding 'funid/src/modeltest.py' 2023-01-29T23:22:47,985 adding 'funid/src/multigene.py' 2023-01-29T23:22:47,987 adding 'funid/src/ncbi.py' 2023-01-29T23:22:47,988 adding 'funid/src/opt_generator.py' 2023-01-29T23:22:47,990 adding 'funid/src/patch.py' 2023-01-29T23:22:47,993 adding 'funid/src/reporter.py' 2023-01-29T23:22:47,995 adding 'funid/src/save.py' 2023-01-29T23:22:47,997 adding 'funid/src/search.py' 2023-01-29T23:22:47,999 adding 'funid/src/tool.py' 2023-01-29T23:22:48,000 adding 'funid/src/tree.py' 2023-01-29T23:22:48,005 adding 'funid/src/tree_interpretation.py' 2023-01-29T23:22:48,007 adding 'funid/src/tree_interpretation_pipe.py' 2023-01-29T23:22:48,009 adding 'funid/src/trim.py' 2023-01-29T23:22:48,014 adding 'funid/src/validate_option.py' 2023-01-29T23:22:48,015 adding 'funid/src/validation.py' 2023-01-29T23:22:48,016 adding 'funid/src/visualize.py' 2023-01-29T23:22:48,019 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-01-29T23:22:48,057 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-01-29T23:22:48,076 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-01-29T23:22:48,078 adding 'FunID-0.3.0.dist-info/METADATA' 2023-01-29T23:22:48,079 adding 'FunID-0.3.0.dist-info/WHEEL' 2023-01-29T23:22:48,080 adding 'FunID-0.3.0.dist-info/entry_points.txt' 2023-01-29T23:22:48,081 adding 'FunID-0.3.0.dist-info/top_level.txt' 2023-01-29T23:22:48,084 adding 'FunID-0.3.0.dist-info/RECORD' 2023-01-29T23:22:48,380 removing build/bdist.linux-armv7l/wheel 2023-01-29T23:22:48,671 Building wheel for funid (setup.py): finished with status 'done' 2023-01-29T23:22:50,707 Created wheel for funid: filename=FunID-0.3.0-py3-none-any.whl size=90139219 sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 2023-01-29T23:22:50,708 Stored in directory: /tmp/pip-ephem-wheel-cache-9xqgusxa/wheels/ac/ca/59/9f51f715e6bcb4f41b8edd3bb06056ce7a46b4392923d4b964 2023-01-29T23:22:50,768 Successfully built funid 2023-01-29T23:22:53,366 Removed build tracker: '/tmp/pip-build-tracker-w_a_dj76'