2023-01-31T20:49:59,815 Created temporary directory: /tmp/pip-ephem-wheel-cache-9jichie0 2023-01-31T20:49:59,819 Created temporary directory: /tmp/pip-build-tracker-s80mhdgz 2023-01-31T20:49:59,820 Initialized build tracking at /tmp/pip-build-tracker-s80mhdgz 2023-01-31T20:49:59,821 Created build tracker: /tmp/pip-build-tracker-s80mhdgz 2023-01-31T20:49:59,821 Entered build tracker: /tmp/pip-build-tracker-s80mhdgz 2023-01-31T20:49:59,822 Created temporary directory: /tmp/pip-wheel-zkf75umd 2023-01-31T20:49:59,830 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-01-31T20:49:59,836 Created temporary directory: /tmp/pip-ephem-wheel-cache-77xcbkvq 2023-01-31T20:49:59,885 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-01-31T20:49:59,892 2 location(s) to search for versions of sigprofilerassignment: 2023-01-31T20:49:59,892 * https://pypi.org/simple/sigprofilerassignment/ 2023-01-31T20:49:59,892 * https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-31T20:49:59,893 Fetching project page and analyzing links: https://pypi.org/simple/sigprofilerassignment/ 2023-01-31T20:49:59,894 Getting page https://pypi.org/simple/sigprofilerassignment/ 2023-01-31T20:49:59,898 Found index url https://pypi.org/simple 2023-01-31T20:50:00,137 Fetched page https://pypi.org/simple/sigprofilerassignment/ as application/vnd.pypi.simple.v1+json 2023-01-31T20:50:00,161 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/eb/80/f1205274c434ee073d26adb94743b425d82a6fbbb3d5445454139f8e095e/SigProfilerAssignment-0.0.2-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,162 Found link https://files.pythonhosted.org/packages/cd/7f/d5949b0e1a6099a309d6c3cf5e7da3eecc22fdab13d7fbccf91fc5455bbc/SigProfilerAssignment-0.0.2.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.2 2023-01-31T20:50:00,163 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d4/0a/3ec44d6d52bb12aeed9b8190f3c556bf85bacdf54f26d8458eb80b184219/SigProfilerAssignment-0.0.3-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,163 Found link https://files.pythonhosted.org/packages/bc/57/ce6cc7421edcd9dbc25fd065ada3876b40244852290c9cf852e6dd3e2180/SigProfilerAssignment-0.0.3.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.3 2023-01-31T20:50:00,164 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/13/620a464927e43c92d18e9949938f6b41b14d7111cded624096a02d9b81cc/SigProfilerAssignment-0.0.4-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,165 Found link https://files.pythonhosted.org/packages/8f/9e/8b7673ac9751acd9f82716b4299c155c2152bc26e32925bd5463d9c70800/SigProfilerAssignment-0.0.4.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.4 2023-01-31T20:50:00,165 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/9d/56/1968aaf35ec8597df716ebb6c5cbca6a61892f8a293150f312985a500231/SigProfilerAssignment-0.0.5-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,166 Found link 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2023-01-31T20:50:00,173 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/98/65/b438b8c59fd28a2b6fe3a8650439d5e4dd12c376f0edddf22f20552920e5/SigProfilerAssignment-0.0.11-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,173 Found link https://files.pythonhosted.org/packages/ad/66/15131e6cc8d00269785242b03348f6b514425db74595f95906dad17abd9c/SigProfilerAssignment-0.0.11.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.11 2023-01-31T20:50:00,174 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/5d/97/1b9875b256bc8e72bf1d7ba5025d6fcef5ba852f8332249d7f1c2ca4cdbb/SigProfilerAssignment-0.0.12-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,175 Found link 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(from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,177 Found link https://files.pythonhosted.org/packages/7d/14/76a03a916457f58fc7af023152a5ebab12e9c5c196e7a431a8dff5fd5713/SigProfilerAssignment-0.0.14.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.14 2023-01-31T20:50:00,178 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/58/11/55f11d7b91ceed9ef2f195917f4d6523936f2cc801b9acc87022e1c53a3c/SigProfilerAssignment-0.0.15-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,178 Found link https://files.pythonhosted.org/packages/2b/ab/ef0c797d615a159f3ea2a2430b47f4479b598f0f93b25b5d23e05462c9ba/SigProfilerAssignment-0.0.15.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.15 2023-01-31T20:50:00,179 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/d8/27/852104d5cca8ece5586c5bbccd402376b51d1255460eb67540ae51a234d0/SigProfilerAssignment-0.0.16-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,180 Found link https://files.pythonhosted.org/packages/09/cf/960349c3a4e334416759693bdf0fbe9e03671da4866c0cb51cd83e70e887/SigProfilerAssignment-0.0.16.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.16 2023-01-31T20:50:00,180 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/a5/03/4c78706258493def8af88439f110859e6cdc31a35c004ac3dcc993bb812d/SigProfilerAssignment-0.0.17-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,181 Found link https://files.pythonhosted.org/packages/01/95/3c7b1893786851e46e67efd092c7f6312c935cfae567f3c326e7408821c9/SigProfilerAssignment-0.0.17.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.17 2023-01-31T20:50:00,182 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/76/73/c586f0e9b2bb41a67c64605f214499ca755929f4bf4092d11a28cd2982b7/SigProfilerAssignment-0.0.18-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,182 Found link https://files.pythonhosted.org/packages/30/76/b2ac20625c7d23ebf959681df3436174a0b61be964d8c74829c42ab1b88f/SigProfilerAssignment-0.0.18.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.18 2023-01-31T20:50:00,183 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/57/a1/2d3eb976254038c00cb1c0648a1c56f9e6ad8ad9c9cc93181fc2cc664856/SigProfilerAssignment-0.0.19-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,183 Found link https://files.pythonhosted.org/packages/28/3d/2a9f0503683f6d76d3e27050419679b185d3ad767a4faef2c9281dd91aff/SigProfilerAssignment-0.0.19.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.19 2023-01-31T20:50:00,184 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/26/6d/e259131d359a7eafc0a850674198cdc19e78dc27d014678965d9b2435675/SigProfilerAssignment-0.0.20-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,185 Found link https://files.pythonhosted.org/packages/0e/00/987cee85cba030067de2689702d455221a6c23c477ce2ad0e5eb53bab0bb/SigProfilerAssignment-0.0.20.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.20 2023-01-31T20:50:00,185 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/4c/fb/d48bbe1457334e1bbca02b03f29e82abe686ad751812f8dbd10ef5ea1de9/SigProfilerAssignment-0.0.21-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,186 Found link https://files.pythonhosted.org/packages/fc/16/c115990c96ef0a4707ef4beb2e4e42da6b40b47d5dde5ea20afaaf28c0e7/SigProfilerAssignment-0.0.21.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.21 2023-01-31T20:50:00,187 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/22/d7/f92b2deff403ceccb880d18574e271b6c16fc8e9b0e5d6e16680c61e8329/SigProfilerAssignment-0.0.22-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,187 Found link https://files.pythonhosted.org/packages/22/ab/8c5ef4325bc74b85006c590c76b3a315ece43ade098fab738ef785e8f2c7/SigProfilerAssignment-0.0.22.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.22 2023-01-31T20:50:00,188 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/37/1c/95d8594a43cac1bf505b57a3ce7e010e6ef768809a17854100552161d7ca/SigProfilerAssignment-0.0.23-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,188 Found link https://files.pythonhosted.org/packages/37/0d/f699d559ce0225494e4b3098966cddfb41413ba8d393bf336ffaba124fa8/SigProfilerAssignment-0.0.23.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.23 2023-01-31T20:50:00,189 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/24/d3/cd4160a51d06997687637c2c698242c7759eab750f9955f17c8b6b52f30b/SigProfilerAssignment-0.0.24-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,190 Found link https://files.pythonhosted.org/packages/47/28/d7b19bc69544fd452aba4eae8b067f6bf60b4ed316002e14580bc439ae63/SigProfilerAssignment-0.0.24.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.24 2023-01-31T20:50:00,190 Skipping link: No binaries permitted for sigprofilerassignment: https://files.pythonhosted.org/packages/31/89/ae575cd58dbe2e06e27e2018386375b42603847d88b3f464d74abb0a8614/SigProfilerAssignment-0.0.25-py3-none-any.whl (from https://pypi.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,191 Found link https://files.pythonhosted.org/packages/6b/00/e51c42ad3284d8c3aec8c6442c4276ad70d55752a89be41c0becfea2e402/SigProfilerAssignment-0.0.25.tar.gz (from https://pypi.org/simple/sigprofilerassignment/), version: 0.0.25 2023-01-31T20:50:00,192 Fetching project page and analyzing links: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-31T20:50:00,192 Getting page https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-31T20:50:00,195 Found index url https://www.piwheels.org/simple 2023-01-31T20:50:00,414 Fetched page https://www.piwheels.org/simple/sigprofilerassignment/ as text/html 2023-01-31T20:50:00,433 Skipping link: No binaries permitted for 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https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.6-py3-none-any.whl#sha256=3c24df444dbc2dca805d2ad2027411960b6c5d16edef5752b8cce431600f7bd4 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,444 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.5-py3-none-any.whl#sha256=8dcda60a710617760d56dff2ae80b5a534397648f276af1399674bad57c9fb12 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,445 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.4-py3-none-any.whl#sha256=dfd3c27005fbbcd5ec1c7991f5b1e8904b2ce17d5bdd55291c2ea9132a6eadbe (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,445 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.3-py3-none-any.whl#sha256=8b18bba4e61a6040884d0cddd9c4547a5bfe85135968d4416016dccc5d165d28 (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,446 Skipping link: No binaries permitted for sigprofilerassignment: https://www.piwheels.org/simple/sigprofilerassignment/SigProfilerAssignment-0.0.2-py3-none-any.whl#sha256=6b7c937475ced548e412ca91f1beb750ce7d02abc32ad0a1e1d985353c562bae (from https://www.piwheels.org/simple/sigprofilerassignment/) 2023-01-31T20:50:00,446 Skipping link: not a file: https://www.piwheels.org/simple/sigprofilerassignment/ 2023-01-31T20:50:00,447 Skipping link: not a file: https://pypi.org/simple/sigprofilerassignment/ 2023-01-31T20:50:00,488 Given no hashes to check 1 links for project 'sigprofilerassignment': discarding no candidates 2023-01-31T20:50:00,519 Collecting sigprofilerassignment==0.0.25 2023-01-31T20:50:00,523 Created temporary directory: /tmp/pip-unpack-l2nli2sh 2023-01-31T20:50:01,172 Downloading SigProfilerAssignment-0.0.25.tar.gz (4.6 MB) 2023-01-31T20:50:05,975 Added sigprofilerassignment==0.0.25 from https://files.pythonhosted.org/packages/6b/00/e51c42ad3284d8c3aec8c6442c4276ad70d55752a89be41c0becfea2e402/SigProfilerAssignment-0.0.25.tar.gz to build tracker '/tmp/pip-build-tracker-s80mhdgz' 2023-01-31T20:50:05,978 Running setup.py (path:/tmp/pip-wheel-zkf75umd/sigprofilerassignment_c7bd4b484fb74466984bf8be02125c5c/setup.py) egg_info for package sigprofilerassignment 2023-01-31T20:50:05,979 Created temporary directory: /tmp/pip-pip-egg-info-139bps91 2023-01-31T20:50:05,980 Preparing metadata (setup.py): started 2023-01-31T20:50:05,982 Running command python setup.py egg_info 2023-01-31T20:50:08,546 running egg_info 2023-01-31T20:50:08,551 creating /tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info 2023-01-31T20:50:08,615 writing /tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/PKG-INFO 2023-01-31T20:50:08,621 writing dependency_links to /tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/dependency_links.txt 2023-01-31T20:50:08,626 writing requirements to /tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/requires.txt 2023-01-31T20:50:08,628 writing top-level names to /tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/top_level.txt 2023-01-31T20:50:08,630 writing manifest file '/tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-31T20:50:08,829 reading manifest file '/tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-31T20:50:08,832 reading manifest template 'MANIFEST.in' 2023-01-31T20:50:08,866 adding license file 'LICENSE.txt' 2023-01-31T20:50:08,885 writing manifest file '/tmp/pip-pip-egg-info-139bps91/SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-31T20:50:09,091 Preparing metadata (setup.py): finished with status 'done' 2023-01-31T20:50:09,106 Source in /tmp/pip-wheel-zkf75umd/sigprofilerassignment_c7bd4b484fb74466984bf8be02125c5c has version 0.0.25, which satisfies requirement sigprofilerassignment==0.0.25 from https://files.pythonhosted.org/packages/6b/00/e51c42ad3284d8c3aec8c6442c4276ad70d55752a89be41c0becfea2e402/SigProfilerAssignment-0.0.25.tar.gz 2023-01-31T20:50:09,108 Removed sigprofilerassignment==0.0.25 from https://files.pythonhosted.org/packages/6b/00/e51c42ad3284d8c3aec8c6442c4276ad70d55752a89be41c0becfea2e402/SigProfilerAssignment-0.0.25.tar.gz from build tracker '/tmp/pip-build-tracker-s80mhdgz' 2023-01-31T20:50:09,120 Created temporary directory: /tmp/pip-unpack-jjy7o0xw 2023-01-31T20:50:09,122 Building wheels for collected packages: sigprofilerassignment 2023-01-31T20:50:09,131 Created temporary directory: /tmp/pip-wheel-i29jrb21 2023-01-31T20:50:09,132 Building wheel for sigprofilerassignment (setup.py): started 2023-01-31T20:50:09,134 Destination directory: /tmp/pip-wheel-i29jrb21 2023-01-31T20:50:09,134 Running command python setup.py bdist_wheel 2023-01-31T20:50:11,715 running bdist_wheel 2023-01-31T20:50:12,473 running build 2023-01-31T20:50:12,473 running build_py 2023-01-31T20:50:12,545 creating build 2023-01-31T20:50:12,546 creating build/lib 2023-01-31T20:50:12,547 creating build/lib/SigProfilerAssignment 2023-01-31T20:50:12,549 copying SigProfilerAssignment/Analyzer.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,553 copying SigProfilerAssignment/__init__.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,557 copying SigProfilerAssignment/single_sample.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,562 copying SigProfilerAssignment/version.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,566 copying SigProfilerAssignment/decomposition.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,572 copying SigProfilerAssignment/decompose_subroutines.py -> build/lib/SigProfilerAssignment 2023-01-31T20:50:12,578 running egg_info 2023-01-31T20:50:12,783 writing SigProfilerAssignment.egg-info/PKG-INFO 2023-01-31T20:50:12,787 writing dependency_links to SigProfilerAssignment.egg-info/dependency_links.txt 2023-01-31T20:50:12,791 writing requirements to SigProfilerAssignment.egg-info/requires.txt 2023-01-31T20:50:12,793 writing top-level names to SigProfilerAssignment.egg-info/top_level.txt 2023-01-31T20:50:12,862 reading manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-31T20:50:12,875 reading manifest template 'MANIFEST.in' 2023-01-31T20:50:12,899 adding license file 'LICENSE.txt' 2023-01-31T20:50:12,926 writing manifest file 'SigProfilerAssignment.egg-info/SOURCES.txt' 2023-01-31T20:50:12,931 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,932 !! 2023-01-31T20:50:12,933 ############################ 2023-01-31T20:50:12,933 # Package would be ignored # 2023-01-31T20:50:12,933 ############################ 2023-01-31T20:50:12,934 Python recognizes 'SigProfilerAssignment.DecompositionPlots' as an importable package, 2023-01-31T20:50:12,934 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,935 'SigProfilerAssignment.DecompositionPlots' has been automatically added to the distribution only 2023-01-31T20:50:12,935 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,935 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,936 Please make sure that 'SigProfilerAssignment.DecompositionPlots' is included as a package by using 2023-01-31T20:50:12,936 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,936 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,937 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,937 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,938 documentation page. 2023-01-31T20:50:12,938 !! 2023-01-31T20:50:12,939 check.warn(importable) 2023-01-31T20:50:12,940 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,940 !! 2023-01-31T20:50:12,941 ############################ 2023-01-31T20:50:12,941 # Package would be ignored # 2023-01-31T20:50:12,941 ############################ 2023-01-31T20:50:12,942 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' as an importable package, 2023-01-31T20:50:12,942 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,942 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' has been automatically added to the distribution only 2023-01-31T20:50:12,943 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,943 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,944 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles' is included as a package by using 2023-01-31T20:50:12,944 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,944 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,945 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,945 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,945 documentation page. 2023-01-31T20:50:12,946 !! 2023-01-31T20:50:12,947 check.warn(importable) 2023-01-31T20:50:12,947 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,947 !! 2023-01-31T20:50:12,948 ############################ 2023-01-31T20:50:12,949 # Package would be ignored # 2023-01-31T20:50:12,949 ############################ 2023-01-31T20:50:12,949 Python recognizes 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' as an importable package, 2023-01-31T20:50:12,949 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,950 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' has been automatically added to the distribution only 2023-01-31T20:50:12,950 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,951 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,951 Please make sure that 'SigProfilerAssignment.DecompositionPlots.ReferenceFiles.Fonts' is included as a package by using 2023-01-31T20:50:12,952 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,952 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,952 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,953 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,953 documentation page. 2023-01-31T20:50:12,954 !! 2023-01-31T20:50:12,954 check.warn(importable) 2023-01-31T20:50:12,955 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,955 !! 2023-01-31T20:50:12,956 ############################ 2023-01-31T20:50:12,956 # Package would be ignored # 2023-01-31T20:50:12,956 ############################ 2023-01-31T20:50:12,957 Python recognizes 'SigProfilerAssignment.data' as an importable package, 2023-01-31T20:50:12,957 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,958 'SigProfilerAssignment.data' has been automatically added to the distribution only 2023-01-31T20:50:12,958 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,958 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,959 Please make sure that 'SigProfilerAssignment.data' is included as a package by using 2023-01-31T20:50:12,959 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,960 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,960 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,961 documentation page. 2023-01-31T20:50:12,961 !! 2023-01-31T20:50:12,962 check.warn(importable) 2023-01-31T20:50:12,962 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,962 !! 2023-01-31T20:50:12,963 ############################ 2023-01-31T20:50:12,964 # Package would be ignored # 2023-01-31T20:50:12,964 ############################ 2023-01-31T20:50:12,964 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' as an importable package, 2023-01-31T20:50:12,964 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,965 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' has been automatically added to the distribution only 2023-01-31T20:50:12,965 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,966 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,966 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh37' is included as a package by using 2023-01-31T20:50:12,966 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,967 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,967 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,968 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,968 documentation page. 2023-01-31T20:50:12,969 !! 2023-01-31T20:50:12,969 check.warn(importable) 2023-01-31T20:50:12,970 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,970 !! 2023-01-31T20:50:12,971 ############################ 2023-01-31T20:50:12,971 # Package would be ignored # 2023-01-31T20:50:12,972 ############################ 2023-01-31T20:50:12,972 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' as an importable package, 2023-01-31T20:50:12,972 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,973 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' has been automatically added to the distribution only 2023-01-31T20:50:12,973 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,973 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,974 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.GRCh38' is included as a package by using 2023-01-31T20:50:12,974 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,975 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,975 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,976 documentation page. 2023-01-31T20:50:12,976 !! 2023-01-31T20:50:12,977 check.warn(importable) 2023-01-31T20:50:12,977 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm10' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,978 !! 2023-01-31T20:50:12,978 ############################ 2023-01-31T20:50:12,979 # Package would be ignored # 2023-01-31T20:50:12,979 ############################ 2023-01-31T20:50:12,979 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm10' as an importable package, 2023-01-31T20:50:12,979 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,980 'SigProfilerAssignment.data.Reference_Signatures.mm10' has been automatically added to the distribution only 2023-01-31T20:50:12,980 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,981 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,981 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm10' is included as a package by using 2023-01-31T20:50:12,982 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,982 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,982 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,983 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,983 documentation page. 2023-01-31T20:50:12,984 !! 2023-01-31T20:50:12,984 check.warn(importable) 2023-01-31T20:50:12,985 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.mm9' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,985 !! 2023-01-31T20:50:12,986 ############################ 2023-01-31T20:50:12,986 # Package would be ignored # 2023-01-31T20:50:12,986 ############################ 2023-01-31T20:50:12,987 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.mm9' as an importable package, 2023-01-31T20:50:12,987 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,987 'SigProfilerAssignment.data.Reference_Signatures.mm9' has been automatically added to the distribution only 2023-01-31T20:50:12,988 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,988 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,989 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.mm9' is included as a package by using 2023-01-31T20:50:12,989 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,989 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,989 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,990 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,990 documentation page. 2023-01-31T20:50:12,991 !! 2023-01-31T20:50:12,992 check.warn(importable) 2023-01-31T20:50:12,992 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.Reference_Signatures.rn6' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:12,992 !! 2023-01-31T20:50:12,993 ############################ 2023-01-31T20:50:12,993 # Package would be ignored # 2023-01-31T20:50:12,994 ############################ 2023-01-31T20:50:12,994 Python recognizes 'SigProfilerAssignment.data.Reference_Signatures.rn6' as an importable package, 2023-01-31T20:50:12,994 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:12,995 'SigProfilerAssignment.data.Reference_Signatures.rn6' has been automatically added to the distribution only 2023-01-31T20:50:12,995 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:12,995 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:12,996 Please make sure that 'SigProfilerAssignment.data.Reference_Signatures.rn6' is included as a package by using 2023-01-31T20:50:12,996 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:12,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:12,997 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:12,997 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:12,998 documentation page. 2023-01-31T20:50:12,999 !! 2023-01-31T20:50:12,999 check.warn(importable) 2023-01-31T20:50:13,000 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.cnv_input' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:13,000 !! 2023-01-31T20:50:13,001 ############################ 2023-01-31T20:50:13,003 # Package would be ignored # 2023-01-31T20:50:13,003 ############################ 2023-01-31T20:50:13,004 Python recognizes 'SigProfilerAssignment.data.tests.cnv_input' as an importable package, 2023-01-31T20:50:13,004 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:13,005 'SigProfilerAssignment.data.tests.cnv_input' has been automatically added to the distribution only 2023-01-31T20:50:13,005 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:13,005 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:13,006 Please make sure that 'SigProfilerAssignment.data.tests.cnv_input' is included as a package by using 2023-01-31T20:50:13,006 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:13,007 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:13,007 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:13,008 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:13,009 documentation page. 2023-01-31T20:50:13,010 !! 2023-01-31T20:50:13,010 check.warn(importable) 2023-01-31T20:50:13,011 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.txt_input' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:13,011 !! 2023-01-31T20:50:13,012 ############################ 2023-01-31T20:50:13,012 # Package would be ignored # 2023-01-31T20:50:13,013 ############################ 2023-01-31T20:50:13,013 Python recognizes 'SigProfilerAssignment.data.tests.txt_input' as an importable package, 2023-01-31T20:50:13,014 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:13,015 'SigProfilerAssignment.data.tests.txt_input' has been automatically added to the distribution only 2023-01-31T20:50:13,015 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:13,016 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:13,016 Please make sure that 'SigProfilerAssignment.data.tests.txt_input' is included as a package by using 2023-01-31T20:50:13,016 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:13,017 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:13,017 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:13,018 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:13,019 documentation page. 2023-01-31T20:50:13,020 !! 2023-01-31T20:50:13,021 check.warn(importable) 2023-01-31T20:50:13,021 /usr/local/lib/python3.7/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'SigProfilerAssignment.data.tests.vcf_input' as data is deprecated, please list it in `packages`. 2023-01-31T20:50:13,022 !! 2023-01-31T20:50:13,022 ############################ 2023-01-31T20:50:13,023 # Package would be ignored # 2023-01-31T20:50:13,023 ############################ 2023-01-31T20:50:13,023 Python recognizes 'SigProfilerAssignment.data.tests.vcf_input' as an importable package, 2023-01-31T20:50:13,025 but it is not listed in the `packages` configuration of setuptools. 2023-01-31T20:50:13,026 'SigProfilerAssignment.data.tests.vcf_input' has been automatically added to the distribution only 2023-01-31T20:50:13,026 because it may contain data files, but this behavior is likely to change 2023-01-31T20:50:13,026 in future versions of setuptools (and therefore is considered deprecated). 2023-01-31T20:50:13,027 Please make sure that 'SigProfilerAssignment.data.tests.vcf_input' is included as a package by using 2023-01-31T20:50:13,027 the `packages` configuration field or the proper discovery methods 2023-01-31T20:50:13,028 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-01-31T20:50:13,028 instead of `find_packages(...)`/`find:`). 2023-01-31T20:50:13,028 You can read more about "package discovery" and "data files" on setuptools 2023-01-31T20:50:13,029 documentation page. 2023-01-31T20:50:13,031 !! 2023-01-31T20:50:13,032 check.warn(importable) 2023-01-31T20:50:13,032 creating build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,032 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,033 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,033 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,033 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,034 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,034 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,034 copying SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,038 copying SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/lib/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:13,051 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:13,053 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:13,059 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:13,063 creating build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-31T20:50:13,064 copying SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-31T20:50:13,109 creating build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,111 copying SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,115 copying SigProfilerAssignment/data/CNV_features.tsv -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,119 copying SigProfilerAssignment/data/CNV_signatures.txt -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,124 copying SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,128 copying SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,138 copying SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,161 copying SigProfilerAssignment/data/Samples.txt -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,166 copying SigProfilerAssignment/data/csvexample.csv -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,170 copying SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,174 copying SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,179 copying SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/lib/SigProfilerAssignment/data 2023-01-31T20:50:13,187 creating build/lib/SigProfilerAssignment/data/Reference_Signatures 2023-01-31T20:50:13,188 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,190 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,195 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,202 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,208 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,215 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,221 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,227 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,234 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,249 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,263 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,268 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,274 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,280 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,290 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,302 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,315 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,321 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,327 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,332 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,338 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,350 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,361 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,366 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,371 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,377 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,387 copying SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:13,397 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,399 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,406 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,412 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,419 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,426 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,431 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,437 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,448 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,461 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,472 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,477 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,490 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,503 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,509 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,515 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,528 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,541 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,546 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,552 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,563 copying SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:13,574 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,576 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,583 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,589 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,596 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,604 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,609 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,614 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,625 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,636 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,642 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,648 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,661 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,674 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,681 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,687 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,701 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,723 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,729 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,734 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,744 copying SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:13,756 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,757 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,764 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,771 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,777 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,784 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,789 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,795 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,806 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,818 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,823 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,828 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,839 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,853 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,858 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,863 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,876 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,891 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,896 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,902 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,913 copying SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:13,924 creating build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,925 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,932 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,939 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,947 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,955 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,962 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,968 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,981 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:13,995 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,001 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,007 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,020 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,033 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,039 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,044 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,059 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,077 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,082 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,087 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,098 copying SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,109 creating build/lib/SigProfilerAssignment/data/tests 2023-01-31T20:50:14,110 creating build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-01-31T20:50:14,112 copying SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/lib/SigProfilerAssignment/data/tests/cnv_input 2023-01-31T20:50:14,135 creating build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,137 copying SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,142 copying SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,147 copying SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,152 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,156 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,160 copying SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/lib/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,165 creating build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,166 copying SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,174 copying SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,186 copying SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,196 copying SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,213 copying SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/lib/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,297 /usr/local/lib/python3.7/dist-packages/setuptools/command/install.py:37: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-01-31T20:50:14,298 setuptools.SetuptoolsDeprecationWarning, 2023-01-31T20:50:14,362 installing to build/bdist.linux-armv7l/wheel 2023-01-31T20:50:14,363 running install 2023-01-31T20:50:14,426 running install_lib 2023-01-31T20:50:14,494 creating build/bdist.linux-armv7l 2023-01-31T20:50:14,495 creating build/bdist.linux-armv7l/wheel 2023-01-31T20:50:14,498 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:14,500 copying build/lib/SigProfilerAssignment/Analyzer.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:14,504 copying build/lib/SigProfilerAssignment/__init__.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:14,507 copying build/lib/SigProfilerAssignment/single_sample.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:14,514 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:14,517 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests 2023-01-31T20:50:14,519 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-01-31T20:50:14,521 copying build/lib/SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/cnv_input 2023-01-31T20:50:14,551 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,552 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,556 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,559 copying build/lib/SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,563 copying build/lib/SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,568 copying build/lib/SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,571 copying build/lib/SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/txt_input 2023-01-31T20:50:14,577 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,579 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,591 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,607 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,618 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,673 copying build/lib/SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/tests/vcf_input 2023-01-31T20:50:14,688 copying build/lib/SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:14,736 copying build/lib/SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:14,740 copying build/lib/SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:14,763 copying build/lib/SigProfilerAssignment/data/CNV_signatures.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:14,769 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures 2023-01-31T20:50:14,772 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,774 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,783 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,787 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,793 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,798 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,803 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,813 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,818 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,829 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,840 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,846 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,852 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,862 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,869 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,876 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,882 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,896 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,910 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,915 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,928 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,941 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,946 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,951 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,956 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,960 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,965 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh37 2023-01-31T20:50:14,971 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,972 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,985 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:14,990 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,018 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,031 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,038 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,044 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,049 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,054 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,070 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,077 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,082 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,088 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,093 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,103 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,109 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,114 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,128 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,142 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,162 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/rn6 2023-01-31T20:50:15,175 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,176 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,181 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,192 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,198 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,209 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,214 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,219 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,228 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,233 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,246 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,251 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,264 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,280 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,285 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,305 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,311 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,316 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,323 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,335 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,341 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm9 2023-01-31T20:50:15,347 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,349 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,354 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,358 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,368 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,373 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,378 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,390 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,395 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,406 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,418 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,430 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,436 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,441 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,453 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,459 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,464 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,479 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,486 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,498 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,503 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/mm10 2023-01-31T20:50:15,509 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,512 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,523 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,529 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,534 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,538 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,550 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,555 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,566 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,572 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,584 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,596 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,603 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,615 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,622 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,627 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,638 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,644 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,654 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,660 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,665 copying build/lib/SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data/Reference_Signatures/GRCh38 2023-01-31T20:50:15,670 copying build/lib/SigProfilerAssignment/data/sigProfiler_ID_signatures.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,676 copying build/lib/SigProfilerAssignment/data/Samples.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,681 copying build/lib/SigProfilerAssignment/data/CN_classes_dictionary.txt -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,685 copying build/lib/SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,693 copying build/lib/SigProfilerAssignment/data/csvexample.csv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,697 copying build/lib/SigProfilerAssignment/data/CNV_features.tsv -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,701 copying build/lib/SigProfilerAssignment/data/21_breast_WGS_substitutions.mat -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/data 2023-01-31T20:50:15,705 copying build/lib/SigProfilerAssignment/version.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:15,708 copying build/lib/SigProfilerAssignment/decomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:15,714 copying build/lib/SigProfilerAssignment/decompose_subroutines.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment 2023-01-31T20:50:15,723 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,725 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,754 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,760 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:15,762 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:15,766 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles 2023-01-31T20:50:15,772 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-31T20:50:15,775 copying build/lib/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts 2023-01-31T20:50:15,818 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,822 copying build/lib/SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,833 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,837 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,842 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,846 copying build/lib/SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py -> build/bdist.linux-armv7l/wheel/SigProfilerAssignment/DecompositionPlots 2023-01-31T20:50:15,850 running install_egg_info 2023-01-31T20:50:15,925 Copying SigProfilerAssignment.egg-info to build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.25-py3.7.egg-info 2023-01-31T20:50:15,954 running install_scripts 2023-01-31T20:50:16,164 adding license file "LICENSE.txt" (matched pattern "LICEN[CS]E*") 2023-01-31T20:50:16,173 creating build/bdist.linux-armv7l/wheel/SigProfilerAssignment-0.0.25.dist-info/WHEEL 2023-01-31T20:50:16,178 creating '/tmp/pip-wheel-i29jrb21/SigProfilerAssignment-0.0.25-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-01-31T20:50:16,184 adding 'SigProfilerAssignment/Analyzer.py' 2023-01-31T20:50:16,188 adding 'SigProfilerAssignment/__init__.py' 2023-01-31T20:50:16,201 adding 'SigProfilerAssignment/decompose_subroutines.py' 2023-01-31T20:50:16,211 adding 'SigProfilerAssignment/decomposition.py' 2023-01-31T20:50:16,221 adding 'SigProfilerAssignment/single_sample.py' 2023-01-31T20:50:16,225 adding 'SigProfilerAssignment/version.py' 2023-01-31T20:50:16,233 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition.py' 2023-01-31T20:50:16,238 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_CNV48.py' 2023-01-31T20:50:16,244 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_DBS78.py' 2023-01-31T20:50:16,249 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_ID83.py' 2023-01-31T20:50:16,255 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS1536.py' 2023-01-31T20:50:16,260 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS288.py' 2023-01-31T20:50:16,265 adding 'SigProfilerAssignment/DecompositionPlots/PlotDecomposition_SBS96.py' 2023-01-31T20:50:16,291 adding 'SigProfilerAssignment/DecompositionPlots/SigProfilerPlottingMatrix.py' 2023-01-31T20:50:16,302 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Accolade_fermante.png' 2023-01-31T20:50:16,305 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/CREDIT.md' 2023-01-31T20:50:16,579 adding 'SigProfilerAssignment/DecompositionPlots/ReferenceFiles/Fonts/Arial Bold.ttf' 2023-01-31T20:50:16,600 adding 'SigProfilerAssignment/data/21_breast_WGS_substitutions.mat' 2023-01-31T20:50:16,603 adding 'SigProfilerAssignment/data/CNV_features.tsv' 2023-01-31T20:50:16,610 adding 'SigProfilerAssignment/data/CNV_signatures.txt' 2023-01-31T20:50:16,613 adding 'SigProfilerAssignment/data/CN_classes_dictionary.txt' 2023-01-31T20:50:16,648 adding 'SigProfilerAssignment/data/DBS_signatures_genome_builds.xlsx' 2023-01-31T20:50:16,755 adding 'SigProfilerAssignment/data/SBS_signatures_genome_builds.xlsx' 2023-01-31T20:50:16,767 adding 'SigProfilerAssignment/data/Samples.txt' 2023-01-31T20:50:16,771 adding 'SigProfilerAssignment/data/csvexample.csv' 2023-01-31T20:50:16,776 adding 'SigProfilerAssignment/data/sigProfiler_DBS_signatures.csv' 2023-01-31T20:50:16,783 adding 'SigProfilerAssignment/data/sigProfiler_ID_signatures.csv' 2023-01-31T20:50:16,817 adding 'SigProfilerAssignment/data/sigProfiler_SBS_signatures_2018_03_28.csv' 2023-01-31T20:50:16,829 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37.txt' 2023-01-31T20:50:16,851 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v1_SBS_GRCh37_exome.txt' 2023-01-31T20:50:16,871 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37.txt' 2023-01-31T20:50:16,902 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v2_SBS_GRCh37_exome.txt' 2023-01-31T20:50:16,910 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37.txt' 2023-01-31T20:50:16,918 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_DBS_GRCh37_exome.txt' 2023-01-31T20:50:16,932 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_ID_GRCh37.txt' 2023-01-31T20:50:17,017 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37.txt' 2023-01-31T20:50:17,106 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.1_SBS_GRCh37_exome.txt' 2023-01-31T20:50:17,116 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37.txt' 2023-01-31T20:50:17,123 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_DBS_GRCh37_exome.txt' 2023-01-31T20:50:17,138 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_ID_GRCh37.txt' 2023-01-31T20:50:17,192 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS288_GRCh37.txt' 2023-01-31T20:50:17,286 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37.txt' 2023-01-31T20:50:17,384 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.2_SBS_GRCh37_exome.txt' 2023-01-31T20:50:17,396 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_CN_GRCh37.txt' 2023-01-31T20:50:17,405 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37.txt' 2023-01-31T20:50:17,414 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_DBS_GRCh37_exome.txt' 2023-01-31T20:50:17,437 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_ID_GRCh37.txt' 2023-01-31T20:50:17,530 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37.txt' 2023-01-31T20:50:17,628 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3.3_SBS_GRCh37_exome.txt' 2023-01-31T20:50:17,638 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37.txt' 2023-01-31T20:50:17,648 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_DBS_GRCh37_exome.txt' 2023-01-31T20:50:17,661 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_ID_GRCh37.txt' 2023-01-31T20:50:17,741 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37.txt' 2023-01-31T20:50:17,824 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh37/COSMIC_v3_SBS_GRCh37_exome.txt' 2023-01-31T20:50:17,849 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38.txt' 2023-01-31T20:50:17,872 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v1_SBS_GRCh38_exome.txt' 2023-01-31T20:50:17,903 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38.txt' 2023-01-31T20:50:17,934 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v2_SBS_GRCh38_exome.txt' 2023-01-31T20:50:17,943 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38.txt' 2023-01-31T20:50:17,956 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_DBS_GRCh38_exome.txt' 2023-01-31T20:50:18,042 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38.txt' 2023-01-31T20:50:18,131 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.1_SBS_GRCh38_exome.txt' 2023-01-31T20:50:18,141 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38.txt' 2023-01-31T20:50:18,149 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_DBS_GRCh38_exome.txt' 2023-01-31T20:50:18,243 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38.txt' 2023-01-31T20:50:18,339 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.2_SBS_GRCh38_exome.txt' 2023-01-31T20:50:18,350 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38.txt' 2023-01-31T20:50:18,358 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_DBS_GRCh38_exome.txt' 2023-01-31T20:50:18,453 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38.txt' 2023-01-31T20:50:18,551 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3.3_SBS_GRCh38_exome.txt' 2023-01-31T20:50:18,562 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38.txt' 2023-01-31T20:50:18,570 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_DBS_GRCh38_exome.txt' 2023-01-31T20:50:18,651 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38.txt' 2023-01-31T20:50:18,734 adding 'SigProfilerAssignment/data/Reference_Signatures/GRCh38/COSMIC_v3_SBS_GRCh38_exome.txt' 2023-01-31T20:50:18,759 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10.txt' 2023-01-31T20:50:18,780 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v1_SBS_mm10_exome.txt' 2023-01-31T20:50:18,811 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10.txt' 2023-01-31T20:50:18,842 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v2_SBS_mm10_exome.txt' 2023-01-31T20:50:18,850 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10.txt' 2023-01-31T20:50:18,859 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_DBS_mm10_exome.txt' 2023-01-31T20:50:18,945 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10.txt' 2023-01-31T20:50:19,034 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.1_SBS_mm10_exome.txt' 2023-01-31T20:50:19,045 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10.txt' 2023-01-31T20:50:19,053 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_DBS_mm10_exome.txt' 2023-01-31T20:50:19,146 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10.txt' 2023-01-31T20:50:19,248 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.2_SBS_mm10_exome.txt' 2023-01-31T20:50:19,259 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10.txt' 2023-01-31T20:50:19,267 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_DBS_mm10_exome.txt' 2023-01-31T20:50:19,362 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10.txt' 2023-01-31T20:50:19,461 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3.3_SBS_mm10_exome.txt' 2023-01-31T20:50:19,472 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10.txt' 2023-01-31T20:50:19,479 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_DBS_mm10_exome.txt' 2023-01-31T20:50:19,560 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10.txt' 2023-01-31T20:50:19,643 adding 'SigProfilerAssignment/data/Reference_Signatures/mm10/COSMIC_v3_SBS_mm10_exome.txt' 2023-01-31T20:50:19,668 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9.txt' 2023-01-31T20:50:19,690 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v1_SBS_mm9_exome.txt' 2023-01-31T20:50:19,720 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9.txt' 2023-01-31T20:50:19,752 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v2_SBS_mm9_exome.txt' 2023-01-31T20:50:19,760 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9.txt' 2023-01-31T20:50:19,768 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_DBS_mm9_exome.txt' 2023-01-31T20:50:19,854 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9.txt' 2023-01-31T20:50:19,943 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.1_SBS_mm9_exome.txt' 2023-01-31T20:50:19,953 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9.txt' 2023-01-31T20:50:19,961 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_DBS_mm9_exome.txt' 2023-01-31T20:50:20,055 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9.txt' 2023-01-31T20:50:20,151 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.2_SBS_mm9_exome.txt' 2023-01-31T20:50:20,162 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9.txt' 2023-01-31T20:50:20,170 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_DBS_mm9_exome.txt' 2023-01-31T20:50:20,265 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9.txt' 2023-01-31T20:50:20,363 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3.3_SBS_mm9_exome.txt' 2023-01-31T20:50:20,374 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9.txt' 2023-01-31T20:50:20,382 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_DBS_mm9_exome.txt' 2023-01-31T20:50:20,463 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9.txt' 2023-01-31T20:50:20,546 adding 'SigProfilerAssignment/data/Reference_Signatures/mm9/COSMIC_v3_SBS_mm9_exome.txt' 2023-01-31T20:50:20,571 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6.txt' 2023-01-31T20:50:20,593 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v1_SBS_rn6_exome.txt' 2023-01-31T20:50:20,624 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6.txt' 2023-01-31T20:50:20,655 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v2_SBS_rn6_exome.txt' 2023-01-31T20:50:20,663 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6.txt' 2023-01-31T20:50:20,671 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_DBS_rn6_exome.txt' 2023-01-31T20:50:20,757 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6.txt' 2023-01-31T20:50:20,846 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.1_SBS_rn6_exome.txt' 2023-01-31T20:50:20,856 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6.txt' 2023-01-31T20:50:20,864 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_DBS_rn6_exome.txt' 2023-01-31T20:50:20,957 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6.txt' 2023-01-31T20:50:21,054 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.2_SBS_rn6_exome.txt' 2023-01-31T20:50:21,065 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6.txt' 2023-01-31T20:50:21,072 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_DBS_rn6_exome.txt' 2023-01-31T20:50:21,167 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6.txt' 2023-01-31T20:50:21,265 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3.3_SBS_rn6_exome.txt' 2023-01-31T20:50:21,276 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6.txt' 2023-01-31T20:50:21,284 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_DBS_rn6_exome.txt' 2023-01-31T20:50:21,365 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6.txt' 2023-01-31T20:50:21,449 adding 'SigProfilerAssignment/data/Reference_Signatures/rn6/COSMIC_v3_SBS_rn6_exome.txt' 2023-01-31T20:50:21,616 adding 'SigProfilerAssignment/data/tests/cnv_input/all.breast.ascat.summary.sample.tsv' 2023-01-31T20:50:21,629 adding 'SigProfilerAssignment/data/tests/txt_input/DBS78_S3_Signatures.txt' 2023-01-31T20:50:21,633 adding 'SigProfilerAssignment/data/tests/txt_input/ID83_S3_Signatures.txt' 2023-01-31T20:50:21,637 adding 'SigProfilerAssignment/data/tests/txt_input/SBS96_S3_Signatures.txt' 2023-01-31T20:50:21,641 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_DBS.txt' 2023-01-31T20:50:21,643 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_ID.txt' 2023-01-31T20:50:21,646 adding 'SigProfilerAssignment/data/tests/txt_input/sample_matrix_SBS.txt' 2023-01-31T20:50:21,662 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3851a.vcf' 2023-01-31T20:50:21,713 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3890a.vcf' 2023-01-31T20:50:21,762 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3904a.vcf' 2023-01-31T20:50:21,847 adding 'SigProfilerAssignment/data/tests/vcf_input/PD3945a.vcf' 2023-01-31T20:50:21,902 adding 'SigProfilerAssignment/data/tests/vcf_input/PD4005a.vcf' 2023-01-31T20:50:21,909 adding 'SigProfilerAssignment-0.0.25.dist-info/LICENSE.txt' 2023-01-31T20:50:21,913 adding 'SigProfilerAssignment-0.0.25.dist-info/METADATA' 2023-01-31T20:50:21,915 adding 'SigProfilerAssignment-0.0.25.dist-info/WHEEL' 2023-01-31T20:50:21,917 adding 'SigProfilerAssignment-0.0.25.dist-info/top_level.txt' 2023-01-31T20:50:21,924 adding 'SigProfilerAssignment-0.0.25.dist-info/RECORD' 2023-01-31T20:50:22,098 removing build/bdist.linux-armv7l/wheel 2023-01-31T20:50:22,434 Building wheel for sigprofilerassignment (setup.py): finished with status 'done' 2023-01-31T20:50:22,578 Created wheel for sigprofilerassignment: filename=SigProfilerAssignment-0.0.25-py3-none-any.whl size=4676254 sha256=66a8ae55b1d760a7dc10f1f1ad17a5132725876b9110a1541fc37c2fb541b7e1 2023-01-31T20:50:22,580 Stored in directory: /tmp/pip-ephem-wheel-cache-77xcbkvq/wheels/a7/89/b1/3e38d219063a670e52306b6cc4ae7cab1715e88b16bab42b09 2023-01-31T20:50:22,625 Successfully built sigprofilerassignment 2023-01-31T20:50:22,955 Removed build tracker: '/tmp/pip-build-tracker-s80mhdgz'