2023-02-01T13:29:31,991 Created temporary directory: /tmp/pip-ephem-wheel-cache-r9s2rh0y 2023-02-01T13:29:31,995 Created temporary directory: /tmp/pip-build-tracker-p92qmp_d 2023-02-01T13:29:31,996 Initialized build tracking at /tmp/pip-build-tracker-p92qmp_d 2023-02-01T13:29:31,996 Created build tracker: /tmp/pip-build-tracker-p92qmp_d 2023-02-01T13:29:31,997 Entered build tracker: /tmp/pip-build-tracker-p92qmp_d 2023-02-01T13:29:31,998 Created temporary directory: /tmp/pip-wheel-tg5bzn2t 2023-02-01T13:29:32,006 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-01T13:29:32,011 Created temporary directory: /tmp/pip-ephem-wheel-cache-qju_59xz 2023-02-01T13:29:32,062 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-01T13:29:32,069 2 location(s) to search for versions of resolwe-bio: 2023-02-01T13:29:32,069 * https://pypi.org/simple/resolwe-bio/ 2023-02-01T13:29:32,069 * https://www.piwheels.org/simple/resolwe-bio/ 2023-02-01T13:29:32,070 Fetching project page and analyzing links: https://pypi.org/simple/resolwe-bio/ 2023-02-01T13:29:32,071 Getting page https://pypi.org/simple/resolwe-bio/ 2023-02-01T13:29:32,074 Found index url https://pypi.org/simple 2023-02-01T13:29:32,487 Fetched page https://pypi.org/simple/resolwe-bio/ as application/vnd.pypi.simple.v1+json 2023-02-01T13:29:32,759 Found link https://files.pythonhosted.org/packages/ad/95/a4793259054276ae7dda756167f01c007f7581b92e1c5f8fa3cda29d042e/resolwe-bio-0.0.0.tar.gz (from 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https://www.piwheels.org/simple/resolwe-bio/resolwe_bio-1.2.0-py2.py3-none-any.whl#sha256=6327f209bdd3cbb2cfc0f1d6a884020b715ae48e210db2a219a0b310fbeb4369 (from https://www.piwheels.org/simple/resolwe-bio/) 2023-02-01T13:29:33,960 Skipping link: No binaries permitted for resolwe-bio: https://www.piwheels.org/simple/resolwe-bio/resolwe_bio-1.1.0-py2.py3-none-any.whl#sha256=c3fcea37235e0cd336d7d8ae11e93c499732dd2f0867a9ba9f49515bb3c87f1f (from https://www.piwheels.org/simple/resolwe-bio/) 2023-02-01T13:29:33,961 Skipping link: No binaries permitted for resolwe-bio: https://www.piwheels.org/simple/resolwe-bio/resolwe_bio-1.0.0-py2.py3-none-any.whl#sha256=a5094817355021c6e84cc90e0c3a56bec62d96ea97fd0ee287f0a79e1cfe4816 (from https://www.piwheels.org/simple/resolwe-bio/) 2023-02-01T13:29:33,961 Skipping link: No binaries permitted for resolwe-bio: https://www.piwheels.org/simple/resolwe-bio/resolwe_bio-0.0.0-py3-none-any.whl#sha256=aa9293dd304c91857bc83594e83ba16895cddf739e6c1023095f971cbe6bc22e (from https://www.piwheels.org/simple/resolwe-bio/) (requires-python:>=3.6, <3.11) 2023-02-01T13:29:33,962 Skipping link: not a file: https://www.piwheels.org/simple/resolwe-bio/ 2023-02-01T13:29:33,962 Skipping link: not a file: https://pypi.org/simple/resolwe-bio/ 2023-02-01T13:29:34,077 Given no hashes to check 1 links for project 'resolwe-bio': discarding no candidates 2023-02-01T13:29:34,109 Collecting resolwe-bio==49.0.0a2 2023-02-01T13:29:34,114 Created temporary directory: /tmp/pip-unpack-x73isbcv 2023-02-01T13:29:34,353 Downloading resolwe-bio-49.0.0a2.tar.gz (19.4 MB) 2023-02-01T13:29:49,391 Added resolwe-bio==49.0.0a2 from https://files.pythonhosted.org/packages/87/11/232bd660f451bb9bd6ac4a7ba70468c18493d966e079b005fffe6e0ae1b2/resolwe-bio-49.0.0a2.tar.gz to build tracker '/tmp/pip-build-tracker-p92qmp_d' 2023-02-01T13:29:49,403 Created temporary directory: /tmp/pip-build-env-p_me0ihs 2023-02-01T13:29:49,415 Installing build dependencies: started 2023-02-01T13:29:49,417 Running command pip subprocess to install build dependencies 2023-02-01T13:29:52,358 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-02-01T13:29:53,364 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-01T13:29:53,423 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-01T13:29:57,236 Collecting setuptools>=57.0.0 2023-02-01T13:29:57,473 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.0.0-py3-none-any.whl (1.1 MB) 2023-02-01T13:29:58,362 Collecting setuptools_scm<7,>=6.0.1 2023-02-01T13:29:58,438 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-6.4.2-py3-none-any.whl (37 kB) 2023-02-01T13:29:58,751 Collecting tomli>=1.0.0 2023-02-01T13:29:58,786 Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB) 2023-02-01T13:29:59,186 Collecting packaging>=20.0 2023-02-01T13:29:59,224 Using cached https://www.piwheels.org/simple/packaging/packaging-23.0-py3-none-any.whl (42 kB) 2023-02-01T13:30:06,086 Installing collected packages: tomli, setuptools, packaging, setuptools_scm 2023-02-01T13:30:10,900 Successfully installed packaging-23.0 setuptools-67.0.0 setuptools_scm-6.4.2 tomli-2.0.1 2023-02-01T13:30:10,937 [notice] A new release of pip available: 22.3 -> 22.3.1 2023-02-01T13:30:10,938 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-01T13:30:11,416 Installing build dependencies: finished with status 'done' 2023-02-01T13:30:11,427 Getting requirements to build wheel: started 2023-02-01T13:30:11,429 Running command Getting requirements to build wheel 2023-02-01T13:30:13,391 running egg_info 2023-02-01T13:30:13,404 writing resolwe_bio.egg-info/PKG-INFO 2023-02-01T13:30:13,409 writing dependency_links to resolwe_bio.egg-info/dependency_links.txt 2023-02-01T13:30:13,414 writing requirements to resolwe_bio.egg-info/requires.txt 2023-02-01T13:30:13,416 writing top-level names to resolwe_bio.egg-info/top_level.txt 2023-02-01T13:30:13,640 listing git files failed - pretending there aren't any 2023-02-01T13:30:13,660 reading manifest file 'resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:13,989 reading manifest template 'MANIFEST.in' 2023-02-01T13:30:14,048 warning: no files found matching '.pylintrc' 2023-02-01T13:30:15,953 no previously-included directories found matching 'resolwe_bio/tests/files/large' 2023-02-01T13:30:15,954 adding license file 'LICENSE' 2023-02-01T13:30:16,138 writing manifest file 'resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:16,302 Getting requirements to build wheel: finished with status 'done' 2023-02-01T13:30:16,337 Installing backend dependencies: started 2023-02-01T13:30:16,339 Running command pip subprocess to install backend dependencies 2023-02-01T13:30:19,105 Using pip 22.3 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7) 2023-02-01T13:30:20,115 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-01T13:30:20,170 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-01T13:30:21,043 Collecting wheel 2023-02-01T13:30:21,079 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-01T13:30:27,173 Installing collected packages: wheel 2023-02-01T13:30:27,454 Creating /tmp/pip-build-env-p_me0ihs/normal/bin 2023-02-01T13:30:27,458 changing mode of /tmp/pip-build-env-p_me0ihs/normal/bin/wheel to 755 2023-02-01T13:30:27,484 Successfully installed wheel-0.38.4 2023-02-01T13:30:27,520 [notice] A new release of pip available: 22.3 -> 22.3.1 2023-02-01T13:30:27,521 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-01T13:30:27,894 Installing backend dependencies: finished with status 'done' 2023-02-01T13:30:27,900 Created temporary directory: /tmp/pip-modern-metadata-vpx13z09 2023-02-01T13:30:27,907 Preparing metadata (pyproject.toml): started 2023-02-01T13:30:27,909 Running command Preparing metadata (pyproject.toml) 2023-02-01T13:30:29,692 running dist_info 2023-02-01T13:30:29,741 creating /tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info 2023-02-01T13:30:29,753 writing /tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/PKG-INFO 2023-02-01T13:30:29,758 writing dependency_links to /tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/dependency_links.txt 2023-02-01T13:30:29,763 writing requirements to /tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/requires.txt 2023-02-01T13:30:29,765 writing top-level names to /tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/top_level.txt 2023-02-01T13:30:29,768 writing manifest file '/tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:30,055 listing git files failed - pretending there aren't any 2023-02-01T13:30:30,076 reading manifest file '/tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:30,084 reading manifest template 'MANIFEST.in' 2023-02-01T13:30:30,148 warning: no files found matching '.pylintrc' 2023-02-01T13:30:32,004 no previously-included directories found matching 'resolwe_bio/tests/files/large' 2023-02-01T13:30:32,005 adding license file 'LICENSE' 2023-02-01T13:30:32,129 writing manifest file '/tmp/pip-modern-metadata-vpx13z09/resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:32,136 creating '/tmp/pip-modern-metadata-vpx13z09/resolwe_bio-49.0.0a2.dist-info' 2023-02-01T13:30:32,475 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-01T13:30:32,491 Source in /tmp/pip-wheel-tg5bzn2t/resolwe-bio_7377223fbb7b4daa881993a2e4172fc2 has version 49.0.0a2, which satisfies requirement resolwe-bio==49.0.0a2 from https://files.pythonhosted.org/packages/87/11/232bd660f451bb9bd6ac4a7ba70468c18493d966e079b005fffe6e0ae1b2/resolwe-bio-49.0.0a2.tar.gz 2023-02-01T13:30:32,493 Removed resolwe-bio==49.0.0a2 from https://files.pythonhosted.org/packages/87/11/232bd660f451bb9bd6ac4a7ba70468c18493d966e079b005fffe6e0ae1b2/resolwe-bio-49.0.0a2.tar.gz from build tracker '/tmp/pip-build-tracker-p92qmp_d' 2023-02-01T13:30:32,509 Created temporary directory: /tmp/pip-unpack-2y_lb8qo 2023-02-01T13:30:32,510 Building wheels for collected packages: resolwe-bio 2023-02-01T13:30:32,520 Created temporary directory: /tmp/pip-wheel-ery_q7dv 2023-02-01T13:30:32,520 Destination directory: /tmp/pip-wheel-ery_q7dv 2023-02-01T13:30:32,525 Building wheel for resolwe-bio (pyproject.toml): started 2023-02-01T13:30:32,527 Running command Building wheel for resolwe-bio (pyproject.toml) 2023-02-01T13:30:34,283 running bdist_wheel 2023-02-01T13:30:34,372 running build 2023-02-01T13:30:34,373 running build_py 2023-02-01T13:30:34,393 creating build 2023-02-01T13:30:34,395 creating build/lib 2023-02-01T13:30:34,397 creating build/lib/resolwe_bio 2023-02-01T13:30:34,400 copying resolwe_bio/apps.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,404 copying resolwe_bio/__about__.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,408 copying resolwe_bio/filters.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,412 copying resolwe_bio/models.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,417 copying resolwe_bio/__init__.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,421 copying resolwe_bio/extensions.py -> build/lib/resolwe_bio 2023-02-01T13:30:34,426 creating build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,429 copying resolwe_bio/migrations/0002_metadata_table_type.py -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,433 copying resolwe_bio/migrations/0004_merge_fastq_type.py -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,437 copying resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,441 copying resolwe_bio/migrations/0003_sample_indices.py -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,445 copying resolwe_bio/migrations/__init__.py -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,450 creating build/lib/resolwe_bio/expression_filters 2023-02-01T13:30:34,452 copying resolwe_bio/expression_filters/relation.py -> build/lib/resolwe_bio/expression_filters 2023-02-01T13:30:34,457 copying resolwe_bio/expression_filters/sample.py -> build/lib/resolwe_bio/expression_filters 2023-02-01T13:30:34,461 copying resolwe_bio/expression_filters/__init__.py -> build/lib/resolwe_bio/expression_filters 2023-02-01T13:30:34,467 creating build/lib/resolwe_bio/kb 2023-02-01T13:30:34,469 copying resolwe_bio/kb/listener_plugin.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,474 copying resolwe_bio/kb/apps.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,478 copying resolwe_bio/kb/serializers.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,482 copying resolwe_bio/kb/views.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,486 copying resolwe_bio/kb/admin.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,490 copying resolwe_bio/kb/filters.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,493 copying resolwe_bio/kb/models.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,497 copying resolwe_bio/kb/pagination.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,501 copying resolwe_bio/kb/__init__.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,504 copying resolwe_bio/kb/backends.py -> build/lib/resolwe_bio/kb 2023-02-01T13:30:34,509 creating build/lib/resolwe_bio/utils 2023-02-01T13:30:34,511 copying resolwe_bio/utils/test.py -> build/lib/resolwe_bio/utils 2023-02-01T13:30:34,515 copying resolwe_bio/utils/filter.py -> build/lib/resolwe_bio/utils 2023-02-01T13:30:34,519 copying resolwe_bio/utils/__init__.py -> build/lib/resolwe_bio/utils 2023-02-01T13:30:34,523 creating build/lib/resolwe_bio/process 2023-02-01T13:30:34,525 copying resolwe_bio/process/models.py -> build/lib/resolwe_bio/process 2023-02-01T13:30:34,528 copying resolwe_bio/process/runtime.py -> build/lib/resolwe_bio/process 2023-02-01T13:30:34,532 copying resolwe_bio/process/__init__.py -> build/lib/resolwe_bio/process 2023-02-01T13:30:34,538 creating build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,539 copying resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,543 copying resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,547 copying resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,551 copying resolwe_bio/kb/migrations/0001_initial.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,555 copying resolwe_bio/kb/migrations/0003_add_map_index.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,559 copying resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,562 copying resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,567 copying resolwe_bio/kb/migrations/0005_species.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,571 copying resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,576 copying resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,580 copying resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,583 copying resolwe_bio/kb/migrations/__init__.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,586 copying resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,589 copying resolwe_bio/kb/migrations/0009_full_text_search.py -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,594 creating build/lib/resolwe_bio/kb/management 2023-02-01T13:30:34,595 copying resolwe_bio/kb/management/__init__.py -> build/lib/resolwe_bio/kb/management 2023-02-01T13:30:34,601 creating build/lib/resolwe_bio/kb/management/commands 2023-02-01T13:30:34,603 copying resolwe_bio/kb/management/commands/insert_mappings.py -> build/lib/resolwe_bio/kb/management/commands 2023-02-01T13:30:34,607 copying resolwe_bio/kb/management/commands/utils.py -> build/lib/resolwe_bio/kb/management/commands 2023-02-01T13:30:34,611 copying resolwe_bio/kb/management/commands/__init__.py -> build/lib/resolwe_bio/kb/management/commands 2023-02-01T13:30:34,614 copying resolwe_bio/kb/management/commands/insert_features.py -> build/lib/resolwe_bio/kb/management/commands 2023-02-01T13:30:34,716 creating build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,717 copying resolwe_bio/descriptors/general_clinical.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,724 copying resolwe_bio/descriptors/oncxerna_clinical.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,731 copying resolwe_bio/descriptors/diffexp.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,736 copying resolwe_bio/descriptors/unified-descriptor.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,743 copying resolwe_bio/descriptors/sample.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,748 copying resolwe_bio/descriptors/sample_vaccinesurvey.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,753 copying resolwe_bio/descriptors/geneset.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,757 copying resolwe_bio/descriptors/reads.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,761 copying resolwe_bio/descriptors/rnaseq.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,765 copying resolwe_bio/descriptors/dicty_time_series.yml -> build/lib/resolwe_bio/descriptors 2023-02-01T13:30:34,769 creating build/lib/resolwe_bio/fixtures 2023-02-01T13:30:34,770 copying resolwe_bio/fixtures/relationtypes.yaml -> build/lib/resolwe_bio/fixtures 2023-02-01T13:30:34,774 copying resolwe_bio/kb/migrations/triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,779 copying resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/lib/resolwe_bio/kb/migrations 2023-02-01T13:30:34,782 copying resolwe_bio/migrations/resolwe_indexes.sql -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,787 copying resolwe_bio/migrations/resolwe_indexes_2.sql -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,790 copying resolwe_bio/migrations/resolwe_indexes_3.sql -> build/lib/resolwe_bio/migrations 2023-02-01T13:30:34,795 creating build/lib/resolwe_bio/processes 2023-02-01T13:30:34,796 creating build/lib/resolwe_bio/processes/junctions 2023-02-01T13:30:34,798 copying resolwe_bio/processes/junctions/regtools.yml -> build/lib/resolwe_bio/processes/junctions 2023-02-01T13:30:34,803 creating build/lib/resolwe_bio/processes/annotation 2023-02-01T13:30:34,805 copying resolwe_bio/processes/annotation/abstract.yml -> build/lib/resolwe_bio/processes/annotation 2023-02-01T13:30:34,809 copying resolwe_bio/processes/annotation/cuffmerge.yml -> build/lib/resolwe_bio/processes/annotation 2023-02-01T13:30:34,814 creating build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,815 copying resolwe_bio/processes/alignment/bwa.yml -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,822 copying resolwe_bio/processes/alignment/bwamem2.yml -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,826 copying resolwe_bio/processes/alignment/bowtie.yml -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,832 copying resolwe_bio/processes/alignment/abstract.yml -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,837 copying resolwe_bio/processes/alignment/hisat2.yml -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:34,841 creating build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,843 copying resolwe_bio/processes/import_data/abstract_bed.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,847 copying resolwe_bio/processes/import_data/bam.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,851 copying resolwe_bio/processes/import_data/variants_vcf.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,855 copying resolwe_bio/processes/import_data/annotation_bed.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,859 copying resolwe_bio/processes/import_data/go_gaf.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,863 copying resolwe_bio/processes/import_data/mappability_tab.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,867 copying resolwe_bio/processes/import_data/seq_reads_multiplexed.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,872 copying resolwe_bio/processes/import_data/annotation.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,876 copying resolwe_bio/processes/import_data/go_obo.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,880 copying resolwe_bio/processes/import_data/etc.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,884 copying resolwe_bio/processes/import_data/sam_header.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,887 copying resolwe_bio/processes/import_data/differential_exp.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,892 copying resolwe_bio/processes/import_data/cuffquant.yml -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:34,896 creating build/lib/resolwe_bio/processes/plots 2023-02-01T13:30:34,897 copying resolwe_bio/processes/plots/bamplot.yml -> build/lib/resolwe_bio/processes/plots 2023-02-01T13:30:34,903 copying resolwe_bio/processes/plots/bamliquidator.yml -> build/lib/resolwe_bio/processes/plots 2023-02-01T13:30:34,908 creating build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,909 copying resolwe_bio/processes/unit_tests/test_sleep_progress.yml -> build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,913 copying resolwe_bio/processes/unit_tests/test_list.yml -> build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,918 copying resolwe_bio/processes/unit_tests/test_disabled_fields.yml -> build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,921 copying resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,925 copying resolwe_bio/processes/unit_tests/test_basic_fields.yml -> build/lib/resolwe_bio/processes/unit_tests 2023-02-01T13:30:34,930 creating build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,932 copying resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,938 copying resolwe_bio/processes/chip_seq/scoring.yml -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,942 copying resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,946 copying resolwe_bio/processes/chip_seq/macs14.yml -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,951 copying resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:34,957 creating build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:34,959 copying resolwe_bio/processes/differential_expression/abstract.yml -> build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:34,963 creating build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,964 copying resolwe_bio/processes/expression/mappability.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,969 copying resolwe_bio/processes/expression/cuffnorm.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,973 copying resolwe_bio/processes/expression/cufflinks.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,978 copying resolwe_bio/processes/expression/merge_etc.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,982 copying resolwe_bio/processes/expression/salmon_index.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,986 copying resolwe_bio/processes/expression/merge_expressions.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,990 copying resolwe_bio/processes/expression/abstract.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,993 copying resolwe_bio/processes/expression/etc.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:34,998 copying resolwe_bio/processes/expression/shrna_quant.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,002 copying resolwe_bio/processes/expression/cuffquant.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,006 copying resolwe_bio/processes/expression/dicty_bcm.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,011 copying resolwe_bio/processes/expression/expression_aggregator.yml -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,015 creating build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,016 copying resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,022 copying resolwe_bio/processes/reads_processing/cutadapt.yml -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,027 creating build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,029 copying resolwe_bio/processes/workflows/shrna.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,034 copying resolwe_bio/processes/workflows/wes.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,039 copying resolwe_bio/processes/workflows/atac_seq.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,044 copying resolwe_bio/processes/workflows/wgbs.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,051 copying resolwe_bio/processes/workflows/chemut.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,055 copying resolwe_bio/processes/workflows/wgs.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,061 copying resolwe_bio/processes/workflows/chip_seq.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,068 copying resolwe_bio/processes/workflows/cuffquant.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,071 copying resolwe_bio/processes/workflows/mirna.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,077 copying resolwe_bio/processes/workflows/corall.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,082 copying resolwe_bio/processes/workflows/cut_and_run.yml -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,087 creating build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,089 copying resolwe_bio/processes/WGBS/walt.yml -> build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,094 copying resolwe_bio/processes/WGBS/hmr.yml -> build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,098 copying resolwe_bio/processes/WGBS/methcounts.yml -> build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,102 creating build/lib/resolwe_bio/processes/clustering 2023-02-01T13:30:35,104 copying resolwe_bio/processes/clustering/pca.yml -> build/lib/resolwe_bio/processes/clustering 2023-02-01T13:30:35,108 creating build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,110 copying resolwe_bio/processes/support_processors/library_strandedness.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,114 copying resolwe_bio/processes/support_processors/spikeins_qc.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,118 copying resolwe_bio/processes/support_processors/prepare_geo.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,123 copying resolwe_bio/processes/support_processors/gff_to_gtf.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,127 copying resolwe_bio/processes/support_processors/archive.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,132 copying resolwe_bio/processes/support_processors/bam_split.yml -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,137 copying resolwe_bio/processes/alignment/star.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,142 copying resolwe_bio/processes/alignment/star_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,147 copying resolwe_bio/processes/alignment/bowtie2_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,151 copying resolwe_bio/processes/alignment/bwamem2_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,155 copying resolwe_bio/processes/alignment/hisat2_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,159 copying resolwe_bio/processes/alignment/bwa_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,163 copying resolwe_bio/processes/alignment/bowtie_index.py -> build/lib/resolwe_bio/processes/alignment 2023-02-01T13:30:35,167 copying resolwe_bio/processes/import_data/proteomics_data.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,172 copying resolwe_bio/processes/import_data/basespace.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,177 copying resolwe_bio/processes/import_data/sra_file.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,183 copying resolwe_bio/processes/import_data/seq_reads.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,189 copying resolwe_bio/processes/import_data/methylation_array_idat.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,193 copying resolwe_bio/processes/import_data/annotation_bedpe.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,197 copying resolwe_bio/processes/import_data/ml_ready_reference.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,201 copying resolwe_bio/processes/import_data/metadata.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,206 copying resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,210 copying resolwe_bio/processes/import_data/geneset.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,215 copying resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,219 copying resolwe_bio/processes/import_data/bam_scseq.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,223 copying resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,227 copying resolwe_bio/processes/import_data/nucleotide_seq.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,232 copying resolwe_bio/processes/import_data/expressions.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,237 copying resolwe_bio/processes/import_data/seq_reads_10x.py -> build/lib/resolwe_bio/processes/import_data 2023-02-01T13:30:35,241 creating build/lib/resolwe_bio/processes/scseq 2023-02-01T13:30:35,243 copying resolwe_bio/processes/scseq/cellranger.py -> build/lib/resolwe_bio/processes/scseq 2023-02-01T13:30:35,248 creating build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,250 copying resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,254 copying resolwe_bio/processes/variant_calling/snpeff.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,260 copying resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,264 copying resolwe_bio/processes/variant_calling/variants_to_table.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,269 copying resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,274 copying resolwe_bio/processes/variant_calling/vc_chemut.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,279 copying resolwe_bio/processes/variant_calling/vqsr.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,284 copying resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,289 copying resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,294 copying resolwe_bio/processes/variant_calling/gatk4.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,298 copying resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,303 copying resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,308 copying resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,313 copying resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,318 copying resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/lib/resolwe_bio/processes/variant_calling 2023-02-01T13:30:35,323 copying resolwe_bio/processes/chip_seq/macs2.py -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:35,330 copying resolwe_bio/processes/chip_seq/chipqc.py -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:35,335 copying resolwe_bio/processes/chip_seq/rose2.py -> build/lib/resolwe_bio/processes/chip_seq 2023-02-01T13:30:35,340 copying resolwe_bio/processes/differential_expression/shRNAde.py -> build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:35,345 copying resolwe_bio/processes/differential_expression/cuffdiff.py -> build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:35,350 copying resolwe_bio/processes/differential_expression/deseq.py -> build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:35,355 copying resolwe_bio/processes/differential_expression/edgeR.py -> build/lib/resolwe_bio/processes/differential_expression 2023-02-01T13:30:35,360 creating build/lib/resolwe_bio/processes/samtools 2023-02-01T13:30:35,362 copying resolwe_bio/processes/samtools/samtools_view.py -> build/lib/resolwe_bio/processes/samtools 2023-02-01T13:30:35,368 copying resolwe_bio/processes/samtools/samtools_coverage.py -> build/lib/resolwe_bio/processes/samtools 2023-02-01T13:30:35,373 creating build/lib/resolwe_bio/processes/microarray 2023-02-01T13:30:35,374 copying resolwe_bio/processes/microarray/methylation_arrays.py -> build/lib/resolwe_bio/processes/microarray 2023-02-01T13:30:35,379 copying resolwe_bio/processes/microarray/microarray_expression.py -> build/lib/resolwe_bio/processes/microarray 2023-02-01T13:30:35,384 copying resolwe_bio/processes/microarray/map_probes.py -> build/lib/resolwe_bio/processes/microarray 2023-02-01T13:30:35,389 creating build/lib/resolwe_bio/processes/go_enrichment 2023-02-01T13:30:35,390 copying resolwe_bio/processes/go_enrichment/go.py -> build/lib/resolwe_bio/processes/go_enrichment 2023-02-01T13:30:35,395 copying resolwe_bio/processes/expression/salmon.py -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,401 copying resolwe_bio/processes/expression/featureCounts.py -> build/lib/resolwe_bio/processes/expression 2023-02-01T13:30:35,407 copying resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,412 copying resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,417 copying resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,422 copying resolwe_bio/processes/reads_processing/bbduk.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,431 copying resolwe_bio/processes/reads_processing/split_ncigar.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,435 copying resolwe_bio/processes/reads_processing/trimgalore.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,441 copying resolwe_bio/processes/reads_processing/bamclipper.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,445 copying resolwe_bio/processes/reads_processing/xengsort.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,451 copying resolwe_bio/processes/reads_processing/bqsr.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,458 copying resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,479 copying resolwe_bio/processes/reads_processing/markduplicates.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,484 copying resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/lib/resolwe_bio/processes/reads_processing 2023-02-01T13:30:35,489 copying resolwe_bio/processes/workflows/quantseq.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,494 copying resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,501 copying resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,507 copying resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,513 copying resolwe_bio/processes/workflows/rnaseq_variant_calling_beta.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,518 copying resolwe_bio/processes/workflows/geo_import.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,524 copying resolwe_bio/processes/workflows/wgs_gvcf.py -> build/lib/resolwe_bio/processes/workflows 2023-02-01T13:30:35,528 copying resolwe_bio/processes/WGBS/walt_index.py -> build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,532 copying resolwe_bio/processes/WGBS/bsrate.py -> build/lib/resolwe_bio/processes/WGBS 2023-02-01T13:30:35,537 copying resolwe_bio/processes/clustering/find_similar.py -> build/lib/resolwe_bio/processes/clustering 2023-02-01T13:30:35,541 copying resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/lib/resolwe_bio/processes/clustering 2023-02-01T13:30:35,548 copying resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/lib/resolwe_bio/processes/clustering 2023-02-01T13:30:35,552 copying resolwe_bio/processes/support_processors/wgs_metrics.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,557 copying resolwe_bio/processes/support_processors/mutations_table.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,562 copying resolwe_bio/processes/support_processors/alignment_summary.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,567 copying resolwe_bio/processes/support_processors/seqtk.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,571 copying resolwe_bio/processes/support_processors/insert_size.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,576 copying resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,580 copying resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,584 copying resolwe_bio/processes/support_processors/seqtk_reverse_complement.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,589 copying resolwe_bio/processes/support_processors/merge_samples.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,593 copying resolwe_bio/processes/support_processors/umi_tools.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,598 copying resolwe_bio/processes/support_processors/bam_conversion.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,602 copying resolwe_bio/processes/support_processors/qorts_qc.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,607 copying resolwe_bio/processes/support_processors/multiqc.py -> build/lib/resolwe_bio/processes/support_processors 2023-02-01T13:30:35,612 creating build/lib/resolwe_bio/tools 2023-02-01T13:30:35,614 copying resolwe_bio/tools/mergebowtiestats.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,618 copying resolwe_bio/tools/parse_library_type.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,622 copying resolwe_bio/tools/make_igv_session_archive.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,626 copying resolwe_bio/tools/expression2storage.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,630 copying resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,634 copying resolwe_bio/tools/validate_fastq.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,638 copying resolwe_bio/tools/star_sj_to_bed12.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,642 copying resolwe_bio/tools/pca.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,647 copying resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,651 copying resolwe_bio/tools/parse_cuffnorm.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,655 copying resolwe_bio/tools/importETC.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,659 copying resolwe_bio/tools/xexpression.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,663 copying resolwe_bio/tools/parse_star_expressions.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,667 copying resolwe_bio/tools/plot_enhancers.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,671 copying resolwe_bio/tools/convert_DE_excel_table.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,675 copying resolwe_bio/tools/etc.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,679 copying resolwe_bio/tools/novel_splice_junctions.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,683 copying resolwe_bio/tools/spikeins_report.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,687 copying resolwe_bio/tools/bamliquidator_table.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,690 copying resolwe_bio/tools/postprocess_snpeff.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,695 copying resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,699 copying resolwe_bio/tools/spikein_pairwise.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,703 copying resolwe_bio/tools/unique_sample_names.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,707 copying resolwe_bio/tools/mappability.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,711 copying resolwe_bio/tools/demultiplex.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,716 copying resolwe_bio/tools/expressionmerge_archive.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,720 copying resolwe_bio/tools/mergeetc.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,724 copying resolwe_bio/tools/gff3_to_gtf.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,728 copying resolwe_bio/tools/cufflinks_sample_groups.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,732 copying resolwe_bio/tools/utils.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,736 copying resolwe_bio/tools/mergebowtie2stats.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,740 copying resolwe_bio/tools/expression_aggregator.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,744 copying resolwe_bio/tools/mergebowtie2stats_paired.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,748 copying resolwe_bio/tools/expressionmerge.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,752 copying resolwe_bio/tools/parse_encoding_type.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,756 copying resolwe_bio/tools/parse_diffexp.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,760 copying resolwe_bio/tools/create_gene_sets.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,764 copying resolwe_bio/tools/merge_chipqc_archive.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,768 copying resolwe_bio/tools/cuffnorm_group_labels.py -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,771 copying resolwe_bio/tools/run_edger.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,775 copying resolwe_bio/tools/peak2geneScore.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,779 copying resolwe_bio/tools/diffexp_filtering.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,783 copying resolwe_bio/tools/sesame.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,788 copying resolwe_bio/tools/parse_closest_features.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,792 copying resolwe_bio/tools/deseq.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,795 copying resolwe_bio/tools/tximport_summarize.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,800 copying resolwe_bio/tools/mapped_species_to_expression.R -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,804 copying resolwe_bio/tools/fastqc.sh -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,808 copying resolwe_bio/tools/extract_umi.sh -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,812 copying resolwe_bio/tools/detect_strandedness.sh -> build/lib/resolwe_bio/tools 2023-02-01T13:30:35,868 installing to build/bdist.linux-armv7l/wheel 2023-02-01T13:30:35,869 running install 2023-02-01T13:30:35,931 running install_lib 2023-02-01T13:30:35,948 creating build/bdist.linux-armv7l 2023-02-01T13:30:35,949 creating build/bdist.linux-armv7l/wheel 2023-02-01T13:30:35,953 creating build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:35,956 creating build/bdist.linux-armv7l/wheel/resolwe_bio/fixtures 2023-02-01T13:30:35,958 copying build/lib/resolwe_bio/fixtures/relationtypes.yaml -> build/bdist.linux-armv7l/wheel/resolwe_bio/fixtures 2023-02-01T13:30:35,963 creating build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,964 copying build/lib/resolwe_bio/migrations/0002_metadata_table_type.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,968 copying build/lib/resolwe_bio/migrations/resolwe_indexes.sql -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,972 copying build/lib/resolwe_bio/migrations/resolwe_indexes_2.sql -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,975 copying build/lib/resolwe_bio/migrations/0004_merge_fastq_type.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,979 copying build/lib/resolwe_bio/migrations/0001_squashed_0015_sample_indices.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,982 copying build/lib/resolwe_bio/migrations/0003_sample_indices.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,986 copying build/lib/resolwe_bio/migrations/resolwe_indexes_3.sql -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,990 copying build/lib/resolwe_bio/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/migrations 2023-02-01T13:30:35,994 creating build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters 2023-02-01T13:30:35,996 copying build/lib/resolwe_bio/expression_filters/relation.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters 2023-02-01T13:30:36,000 copying build/lib/resolwe_bio/expression_filters/sample.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters 2023-02-01T13:30:36,003 copying build/lib/resolwe_bio/expression_filters/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/expression_filters 2023-02-01T13:30:36,007 copying build/lib/resolwe_bio/apps.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:36,013 creating build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,015 copying build/lib/resolwe_bio/tools/mergebowtiestats.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,019 copying build/lib/resolwe_bio/tools/parse_library_type.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,022 copying build/lib/resolwe_bio/tools/make_igv_session_archive.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,026 copying build/lib/resolwe_bio/tools/expression2storage.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,029 copying build/lib/resolwe_bio/tools/bed_file_corrections_genome_browsers.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,032 copying build/lib/resolwe_bio/tools/run_edger.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,036 copying build/lib/resolwe_bio/tools/validate_fastq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,039 copying build/lib/resolwe_bio/tools/star_sj_to_bed12.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,043 copying build/lib/resolwe_bio/tools/pca.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,048 copying build/lib/resolwe_bio/tools/cuffnorm_output_table_headers.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,051 copying build/lib/resolwe_bio/tools/peak2geneScore.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,054 copying build/lib/resolwe_bio/tools/parse_cuffnorm.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,058 copying build/lib/resolwe_bio/tools/importETC.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,061 copying build/lib/resolwe_bio/tools/xexpression.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,065 copying build/lib/resolwe_bio/tools/parse_star_expressions.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,069 copying build/lib/resolwe_bio/tools/plot_enhancers.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,072 copying build/lib/resolwe_bio/tools/convert_DE_excel_table.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,075 copying build/lib/resolwe_bio/tools/etc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,079 copying build/lib/resolwe_bio/tools/novel_splice_junctions.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,082 copying build/lib/resolwe_bio/tools/spikeins_report.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,086 copying build/lib/resolwe_bio/tools/diffexp_filtering.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,089 copying build/lib/resolwe_bio/tools/bamliquidator_table.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,092 copying build/lib/resolwe_bio/tools/postprocess_snpeff.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,096 copying build/lib/resolwe_bio/tools/lofreq2_indel_ovlp.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,100 copying build/lib/resolwe_bio/tools/spikein_pairwise.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,104 copying build/lib/resolwe_bio/tools/sesame.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,108 copying build/lib/resolwe_bio/tools/unique_sample_names.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,112 copying build/lib/resolwe_bio/tools/mappability.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,115 copying build/lib/resolwe_bio/tools/demultiplex.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,120 copying build/lib/resolwe_bio/tools/parse_closest_features.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,123 copying build/lib/resolwe_bio/tools/expressionmerge_archive.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,127 copying build/lib/resolwe_bio/tools/mergeetc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,131 copying build/lib/resolwe_bio/tools/gff3_to_gtf.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,134 copying build/lib/resolwe_bio/tools/deseq.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,138 copying build/lib/resolwe_bio/tools/cufflinks_sample_groups.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,142 copying build/lib/resolwe_bio/tools/fastqc.sh -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,145 copying build/lib/resolwe_bio/tools/utils.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,149 copying build/lib/resolwe_bio/tools/tximport_summarize.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,152 copying build/lib/resolwe_bio/tools/mergebowtie2stats.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,156 copying build/lib/resolwe_bio/tools/expression_aggregator.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,160 copying build/lib/resolwe_bio/tools/mergebowtie2stats_paired.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,163 copying build/lib/resolwe_bio/tools/expressionmerge.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,167 copying build/lib/resolwe_bio/tools/parse_encoding_type.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,170 copying build/lib/resolwe_bio/tools/parse_diffexp.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,174 copying build/lib/resolwe_bio/tools/create_gene_sets.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,177 copying build/lib/resolwe_bio/tools/extract_umi.sh -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,181 copying build/lib/resolwe_bio/tools/merge_chipqc_archive.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,184 copying build/lib/resolwe_bio/tools/mapped_species_to_expression.R -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,187 copying build/lib/resolwe_bio/tools/detect_strandedness.sh -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,191 copying build/lib/resolwe_bio/tools/cuffnorm_group_labels.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/tools 2023-02-01T13:30:36,194 copying build/lib/resolwe_bio/__about__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:36,198 copying build/lib/resolwe_bio/filters.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:36,201 copying build/lib/resolwe_bio/models.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:36,206 creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,209 creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,212 copying build/lib/resolwe_bio/kb/migrations/0011_feature_type_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,216 copying build/lib/resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,221 copying build/lib/resolwe_bio/kb/migrations/0008_callable_defaults.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,225 copying build/lib/resolwe_bio/kb/migrations/0001_initial.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,229 copying build/lib/resolwe_bio/kb/migrations/0003_add_map_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,233 copying build/lib/resolwe_bio/kb/migrations/triggers_feature.sql -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,237 copying build/lib/resolwe_bio/kb/migrations/0012_update_feature_search.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,241 copying build/lib/resolwe_bio/kb/migrations/0010_update_indexes_constraints.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,245 copying build/lib/resolwe_bio/kb/migrations/0005_species.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,249 copying build/lib/resolwe_bio/kb/migrations/0002_alter_field_max_length.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,253 copying build/lib/resolwe_bio/kb/migrations/0006_feature_fullname_300.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,257 copying build/lib/resolwe_bio/kb/migrations/0004_add_unique_together.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,261 copying build/lib/resolwe_bio/kb/migrations/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,264 copying build/lib/resolwe_bio/kb/migrations/reverse_triggers_feature.sql -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,268 copying build/lib/resolwe_bio/kb/migrations/0007_feature_fullname_350.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,272 copying build/lib/resolwe_bio/kb/migrations/0009_full_text_search.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/migrations 2023-02-01T13:30:36,277 creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management 2023-02-01T13:30:36,280 creating build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands 2023-02-01T13:30:36,283 copying build/lib/resolwe_bio/kb/management/commands/insert_mappings.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands 2023-02-01T13:30:36,288 copying build/lib/resolwe_bio/kb/management/commands/utils.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands 2023-02-01T13:30:36,292 copying build/lib/resolwe_bio/kb/management/commands/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands 2023-02-01T13:30:36,296 copying build/lib/resolwe_bio/kb/management/commands/insert_features.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management/commands 2023-02-01T13:30:36,300 copying build/lib/resolwe_bio/kb/management/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb/management 2023-02-01T13:30:36,304 copying build/lib/resolwe_bio/kb/listener_plugin.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,307 copying build/lib/resolwe_bio/kb/apps.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,311 copying build/lib/resolwe_bio/kb/serializers.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,314 copying build/lib/resolwe_bio/kb/views.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,317 copying build/lib/resolwe_bio/kb/admin.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,321 copying build/lib/resolwe_bio/kb/filters.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,324 copying build/lib/resolwe_bio/kb/models.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,328 copying build/lib/resolwe_bio/kb/pagination.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,331 copying build/lib/resolwe_bio/kb/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,335 copying build/lib/resolwe_bio/kb/backends.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/kb 2023-02-01T13:30:36,339 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes 2023-02-01T13:30:36,342 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/junctions 2023-02-01T13:30:36,344 copying build/lib/resolwe_bio/processes/junctions/regtools.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/junctions 2023-02-01T13:30:36,350 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/annotation 2023-02-01T13:30:36,351 copying build/lib/resolwe_bio/processes/annotation/abstract.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/annotation 2023-02-01T13:30:36,355 copying build/lib/resolwe_bio/processes/annotation/cuffmerge.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/annotation 2023-02-01T13:30:36,360 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,362 copying build/lib/resolwe_bio/processes/alignment/bwa.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,367 copying build/lib/resolwe_bio/processes/alignment/star.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,372 copying build/lib/resolwe_bio/processes/alignment/star_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,377 copying build/lib/resolwe_bio/processes/alignment/bwamem2.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,381 copying build/lib/resolwe_bio/processes/alignment/bowtie2_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,384 copying build/lib/resolwe_bio/processes/alignment/bwamem2_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,387 copying build/lib/resolwe_bio/processes/alignment/bowtie.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,393 copying build/lib/resolwe_bio/processes/alignment/abstract.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,397 copying build/lib/resolwe_bio/processes/alignment/hisat2_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,401 copying build/lib/resolwe_bio/processes/alignment/hisat2.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,405 copying build/lib/resolwe_bio/processes/alignment/bwa_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,408 copying build/lib/resolwe_bio/processes/alignment/bowtie_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/alignment 2023-02-01T13:30:36,414 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,416 copying build/lib/resolwe_bio/processes/import_data/abstract_bed.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,420 copying build/lib/resolwe_bio/processes/import_data/bam.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,424 copying build/lib/resolwe_bio/processes/import_data/variants_vcf.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,428 copying build/lib/resolwe_bio/processes/import_data/proteomics_data.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,432 copying build/lib/resolwe_bio/processes/import_data/annotation_bed.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,436 copying build/lib/resolwe_bio/processes/import_data/basespace.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,440 copying build/lib/resolwe_bio/processes/import_data/sra_file.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,445 copying build/lib/resolwe_bio/processes/import_data/seq_reads.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,451 copying build/lib/resolwe_bio/processes/import_data/methylation_array_idat.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,454 copying build/lib/resolwe_bio/processes/import_data/go_gaf.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,458 copying build/lib/resolwe_bio/processes/import_data/mappability_tab.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,462 copying build/lib/resolwe_bio/processes/import_data/annotation_bedpe.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,465 copying build/lib/resolwe_bio/processes/import_data/seq_reads_multiplexed.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,470 copying build/lib/resolwe_bio/processes/import_data/annotation.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,474 copying build/lib/resolwe_bio/processes/import_data/ml_ready_reference.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,478 copying build/lib/resolwe_bio/processes/import_data/metadata.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,483 copying build/lib/resolwe_bio/processes/import_data/ensembl_vep_cache.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,487 copying build/lib/resolwe_bio/processes/import_data/go_obo.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,490 copying build/lib/resolwe_bio/processes/import_data/etc.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,494 copying build/lib/resolwe_bio/processes/import_data/sam_header.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,498 copying build/lib/resolwe_bio/processes/import_data/geneset.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,502 copying build/lib/resolwe_bio/processes/import_data/differential_exp.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,507 copying build/lib/resolwe_bio/processes/import_data/cuffquant.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,511 copying build/lib/resolwe_bio/processes/import_data/ml_ready_expressions.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,515 copying build/lib/resolwe_bio/processes/import_data/bam_scseq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,519 copying build/lib/resolwe_bio/processes/import_data/bwamem2_index_files.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,522 copying build/lib/resolwe_bio/processes/import_data/nucleotide_seq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,527 copying build/lib/resolwe_bio/processes/import_data/expressions.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,532 copying build/lib/resolwe_bio/processes/import_data/seq_reads_10x.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/import_data 2023-02-01T13:30:36,536 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/scseq 2023-02-01T13:30:36,538 copying build/lib/resolwe_bio/processes/scseq/cellranger.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/scseq 2023-02-01T13:30:36,544 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,546 copying build/lib/resolwe_bio/processes/variant_calling/ensembl_vep.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,551 copying build/lib/resolwe_bio/processes/variant_calling/snpeff.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,556 copying build/lib/resolwe_bio/processes/variant_calling/create_genomicsdb.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,560 copying build/lib/resolwe_bio/processes/variant_calling/variants_to_table.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,565 copying build/lib/resolwe_bio/processes/variant_calling/filtering_chemut.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,569 copying build/lib/resolwe_bio/processes/variant_calling/vc_chemut.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,574 copying build/lib/resolwe_bio/processes/variant_calling/vqsr.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,579 copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_filtration.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,583 copying build/lib/resolwe_bio/processes/variant_calling/genotype_gvcfs.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,588 copying build/lib/resolwe_bio/processes/variant_calling/gatk4.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,592 copying build/lib/resolwe_bio/processes/variant_calling/wgs_preprocess_bwa2.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,597 copying build/lib/resolwe_bio/processes/variant_calling/gatk_select_variants.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,602 copying build/lib/resolwe_bio/processes/variant_calling/gatk_variant_refinement.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,606 copying build/lib/resolwe_bio/processes/variant_calling/gatk4_hc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,611 copying build/lib/resolwe_bio/processes/variant_calling/gatk_merge_vcfs.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/variant_calling 2023-02-01T13:30:36,616 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/plots 2023-02-01T13:30:36,618 copying build/lib/resolwe_bio/processes/plots/bamplot.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/plots 2023-02-01T13:30:36,622 copying build/lib/resolwe_bio/processes/plots/bamliquidator.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/plots 2023-02-01T13:30:36,628 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,630 copying build/lib/resolwe_bio/processes/unit_tests/test_sleep_progress.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,634 copying build/lib/resolwe_bio/processes/unit_tests/test_list.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,637 copying build/lib/resolwe_bio/processes/unit_tests/test_disabled_fields.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,640 copying build/lib/resolwe_bio/processes/unit_tests/test_hidden_fields.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,644 copying build/lib/resolwe_bio/processes/unit_tests/test_basic_fields.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/unit_tests 2023-02-01T13:30:36,649 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,651 copying build/lib/resolwe_bio/processes/chip_seq/macs2_batch.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,657 copying build/lib/resolwe_bio/processes/chip_seq/scoring.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,662 copying build/lib/resolwe_bio/processes/chip_seq/macs2.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,671 copying build/lib/resolwe_bio/processes/chip_seq/prepeak_qc.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,676 copying build/lib/resolwe_bio/processes/chip_seq/chipqc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,680 copying build/lib/resolwe_bio/processes/chip_seq/macs14.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,684 copying build/lib/resolwe_bio/processes/chip_seq/macs2_rose2_batch.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,690 copying build/lib/resolwe_bio/processes/chip_seq/rose2.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/chip_seq 2023-02-01T13:30:36,696 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,698 copying build/lib/resolwe_bio/processes/differential_expression/shRNAde.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,702 copying build/lib/resolwe_bio/processes/differential_expression/cuffdiff.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,707 copying build/lib/resolwe_bio/processes/differential_expression/deseq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,711 copying build/lib/resolwe_bio/processes/differential_expression/abstract.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,715 copying build/lib/resolwe_bio/processes/differential_expression/edgeR.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/differential_expression 2023-02-01T13:30:36,720 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/samtools 2023-02-01T13:30:36,721 copying build/lib/resolwe_bio/processes/samtools/samtools_view.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/samtools 2023-02-01T13:30:36,726 copying build/lib/resolwe_bio/processes/samtools/samtools_coverage.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/samtools 2023-02-01T13:30:36,731 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray 2023-02-01T13:30:36,733 copying build/lib/resolwe_bio/processes/microarray/methylation_arrays.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray 2023-02-01T13:30:36,737 copying build/lib/resolwe_bio/processes/microarray/microarray_expression.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray 2023-02-01T13:30:36,741 copying build/lib/resolwe_bio/processes/microarray/map_probes.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/microarray 2023-02-01T13:30:36,747 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/go_enrichment 2023-02-01T13:30:36,749 copying build/lib/resolwe_bio/processes/go_enrichment/go.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/go_enrichment 2023-02-01T13:30:36,754 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,756 copying build/lib/resolwe_bio/processes/expression/mappability.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,760 copying build/lib/resolwe_bio/processes/expression/cuffnorm.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,764 copying build/lib/resolwe_bio/processes/expression/cufflinks.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,769 copying build/lib/resolwe_bio/processes/expression/merge_etc.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,772 copying build/lib/resolwe_bio/processes/expression/salmon.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,778 copying build/lib/resolwe_bio/processes/expression/salmon_index.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,781 copying build/lib/resolwe_bio/processes/expression/merge_expressions.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,785 copying build/lib/resolwe_bio/processes/expression/abstract.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,788 copying build/lib/resolwe_bio/processes/expression/etc.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,792 copying build/lib/resolwe_bio/processes/expression/shrna_quant.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,796 copying build/lib/resolwe_bio/processes/expression/cuffquant.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,800 copying build/lib/resolwe_bio/processes/expression/dicty_bcm.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,804 copying build/lib/resolwe_bio/processes/expression/featureCounts.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,810 copying build/lib/resolwe_bio/processes/expression/expression_aggregator.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/expression 2023-02-01T13:30:36,815 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,817 copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_3prime.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,822 copying build/lib/resolwe_bio/processes/reads_processing/alignmentsieve.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,827 copying build/lib/resolwe_bio/processes/reads_processing/cutadapt_corall.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,831 copying build/lib/resolwe_bio/processes/reads_processing/trimmomatic.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,837 copying build/lib/resolwe_bio/processes/reads_processing/bbduk.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,845 copying build/lib/resolwe_bio/processes/reads_processing/split_ncigar.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,849 copying build/lib/resolwe_bio/processes/reads_processing/trimgalore.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,854 copying build/lib/resolwe_bio/processes/reads_processing/bamclipper.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,859 copying build/lib/resolwe_bio/processes/reads_processing/xengsort.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,864 copying build/lib/resolwe_bio/processes/reads_processing/cutadapt.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,870 copying build/lib/resolwe_bio/processes/reads_processing/bqsr.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,875 copying build/lib/resolwe_bio/processes/reads_processing/bam_to_fastq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,879 copying build/lib/resolwe_bio/processes/reads_processing/markduplicates.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,884 copying build/lib/resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/reads_processing 2023-02-01T13:30:36,890 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,893 copying build/lib/resolwe_bio/processes/workflows/shrna.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,898 copying build/lib/resolwe_bio/processes/workflows/wes.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,903 copying build/lib/resolwe_bio/processes/workflows/quantseq.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,908 copying build/lib/resolwe_bio/processes/workflows/atac_seq.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,913 copying build/lib/resolwe_bio/processes/workflows/bbduk_star_featurecounts_qc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,919 copying build/lib/resolwe_bio/processes/workflows/rnaseq_variant_calling.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,925 copying build/lib/resolwe_bio/processes/workflows/bbduk_salmon_qc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,930 copying build/lib/resolwe_bio/processes/workflows/wgbs.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,937 copying build/lib/resolwe_bio/processes/workflows/chemut.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,941 copying build/lib/resolwe_bio/processes/workflows/wgs.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,946 copying build/lib/resolwe_bio/processes/workflows/chip_seq.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,953 copying build/lib/resolwe_bio/processes/workflows/rnaseq_variant_calling_beta.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,958 copying build/lib/resolwe_bio/processes/workflows/geo_import.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,963 copying build/lib/resolwe_bio/processes/workflows/cuffquant.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,967 copying build/lib/resolwe_bio/processes/workflows/mirna.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,972 copying build/lib/resolwe_bio/processes/workflows/wgs_gvcf.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,977 copying build/lib/resolwe_bio/processes/workflows/corall.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,982 copying build/lib/resolwe_bio/processes/workflows/cut_and_run.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/workflows 2023-02-01T13:30:36,989 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:36,992 copying build/lib/resolwe_bio/processes/WGBS/walt.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:36,997 copying build/lib/resolwe_bio/processes/WGBS/hmr.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:37,001 copying build/lib/resolwe_bio/processes/WGBS/methcounts.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:37,005 copying build/lib/resolwe_bio/processes/WGBS/walt_index.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:37,009 copying build/lib/resolwe_bio/processes/WGBS/bsrate.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/WGBS 2023-02-01T13:30:37,014 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering 2023-02-01T13:30:37,017 copying build/lib/resolwe_bio/processes/clustering/find_similar.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering 2023-02-01T13:30:37,022 copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering 2023-02-01T13:30:37,028 copying build/lib/resolwe_bio/processes/clustering/pca.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering 2023-02-01T13:30:37,032 copying build/lib/resolwe_bio/processes/clustering/hierarchical_clustering_etc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/clustering 2023-02-01T13:30:37,038 creating build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,041 copying build/lib/resolwe_bio/processes/support_processors/library_strandedness.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,045 copying build/lib/resolwe_bio/processes/support_processors/spikeins_qc.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,049 copying build/lib/resolwe_bio/processes/support_processors/wgs_metrics.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,054 copying build/lib/resolwe_bio/processes/support_processors/mutations_table.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,059 copying build/lib/resolwe_bio/processes/support_processors/alignment_summary.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,064 copying build/lib/resolwe_bio/processes/support_processors/prepare_geo.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,069 copying build/lib/resolwe_bio/processes/support_processors/gff_to_gtf.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,073 copying build/lib/resolwe_bio/processes/support_processors/seqtk.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,078 copying build/lib/resolwe_bio/processes/support_processors/insert_size.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,082 copying build/lib/resolwe_bio/processes/support_processors/archive.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,087 copying build/lib/resolwe_bio/processes/support_processors/rrbs_metrics.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,094 copying build/lib/resolwe_bio/processes/support_processors/samtools_idxstats.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,098 copying build/lib/resolwe_bio/processes/support_processors/seqtk_reverse_complement.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,103 copying build/lib/resolwe_bio/processes/support_processors/merge_samples.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,108 copying build/lib/resolwe_bio/processes/support_processors/bam_split.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,112 copying build/lib/resolwe_bio/processes/support_processors/umi_tools.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,117 copying build/lib/resolwe_bio/processes/support_processors/bam_conversion.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,121 copying build/lib/resolwe_bio/processes/support_processors/qorts_qc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,126 copying build/lib/resolwe_bio/processes/support_processors/multiqc.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/processes/support_processors 2023-02-01T13:30:37,132 copying build/lib/resolwe_bio/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:37,138 creating build/bdist.linux-armv7l/wheel/resolwe_bio/utils 2023-02-01T13:30:37,140 copying build/lib/resolwe_bio/utils/test.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/utils 2023-02-01T13:30:37,145 copying build/lib/resolwe_bio/utils/filter.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/utils 2023-02-01T13:30:37,149 copying build/lib/resolwe_bio/utils/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/utils 2023-02-01T13:30:37,155 creating build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,157 copying build/lib/resolwe_bio/descriptors/general_clinical.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,164 copying build/lib/resolwe_bio/descriptors/oncxerna_clinical.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,170 copying build/lib/resolwe_bio/descriptors/diffexp.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,174 copying build/lib/resolwe_bio/descriptors/unified-descriptor.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,181 copying build/lib/resolwe_bio/descriptors/sample.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,186 copying build/lib/resolwe_bio/descriptors/sample_vaccinesurvey.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,191 copying build/lib/resolwe_bio/descriptors/geneset.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,195 copying build/lib/resolwe_bio/descriptors/reads.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,198 copying build/lib/resolwe_bio/descriptors/rnaseq.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,202 copying build/lib/resolwe_bio/descriptors/dicty_time_series.yml -> build/bdist.linux-armv7l/wheel/resolwe_bio/descriptors 2023-02-01T13:30:37,207 creating build/bdist.linux-armv7l/wheel/resolwe_bio/process 2023-02-01T13:30:37,209 copying build/lib/resolwe_bio/process/models.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/process 2023-02-01T13:30:37,213 copying build/lib/resolwe_bio/process/runtime.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/process 2023-02-01T13:30:37,216 copying build/lib/resolwe_bio/process/__init__.py -> build/bdist.linux-armv7l/wheel/resolwe_bio/process 2023-02-01T13:30:37,219 copying build/lib/resolwe_bio/extensions.py -> build/bdist.linux-armv7l/wheel/resolwe_bio 2023-02-01T13:30:37,223 running install_egg_info 2023-02-01T13:30:37,281 running egg_info 2023-02-01T13:30:37,293 writing resolwe_bio.egg-info/PKG-INFO 2023-02-01T13:30:37,297 writing dependency_links to resolwe_bio.egg-info/dependency_links.txt 2023-02-01T13:30:37,301 writing requirements to resolwe_bio.egg-info/requires.txt 2023-02-01T13:30:37,303 writing top-level names to resolwe_bio.egg-info/top_level.txt 2023-02-01T13:30:37,471 listing git files failed - pretending there aren't any 2023-02-01T13:30:37,494 reading manifest file 'resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:37,580 reading manifest template 'MANIFEST.in' 2023-02-01T13:30:37,637 warning: no files found matching '.pylintrc' 2023-02-01T13:30:39,477 no previously-included directories found matching 'resolwe_bio/tests/files/large' 2023-02-01T13:30:39,478 adding license file 'LICENSE' 2023-02-01T13:30:39,660 writing manifest file 'resolwe_bio.egg-info/SOURCES.txt' 2023-02-01T13:30:39,667 Copying resolwe_bio.egg-info to build/bdist.linux-armv7l/wheel/resolwe_bio-49.0.0a2-py3.7.egg-info 2023-02-01T13:30:39,692 running install_scripts 2023-02-01T13:30:39,864 creating build/bdist.linux-armv7l/wheel/resolwe_bio-49.0.0a2.dist-info/WHEEL 2023-02-01T13:30:39,869 creating '/tmp/pip-wheel-ery_q7dv/.tmp-2wuozpsb/resolwe_bio-49.0.0a2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-01T13:30:39,874 adding 'resolwe_bio/__about__.py' 2023-02-01T13:30:39,878 adding 'resolwe_bio/__init__.py' 2023-02-01T13:30:39,880 adding 'resolwe_bio/apps.py' 2023-02-01T13:30:39,883 adding 'resolwe_bio/extensions.py' 2023-02-01T13:30:39,886 adding 'resolwe_bio/filters.py' 2023-02-01T13:30:39,889 adding 'resolwe_bio/models.py' 2023-02-01T13:30:39,893 adding 'resolwe_bio/descriptors/dicty_time_series.yml' 2023-02-01T13:30:39,895 adding 'resolwe_bio/descriptors/diffexp.yml' 2023-02-01T13:30:39,901 adding 'resolwe_bio/descriptors/general_clinical.yml' 2023-02-01T13:30:39,904 adding 'resolwe_bio/descriptors/geneset.yml' 2023-02-01T13:30:39,911 adding 'resolwe_bio/descriptors/oncxerna_clinical.yml' 2023-02-01T13:30:39,914 adding 'resolwe_bio/descriptors/reads.yml' 2023-02-01T13:30:39,916 adding 'resolwe_bio/descriptors/rnaseq.yml' 2023-02-01T13:30:39,921 adding 'resolwe_bio/descriptors/sample.yml' 2023-02-01T13:30:39,924 adding 'resolwe_bio/descriptors/sample_vaccinesurvey.yml' 2023-02-01T13:30:39,932 adding 'resolwe_bio/descriptors/unified-descriptor.yml' 2023-02-01T13:30:39,937 adding 'resolwe_bio/expression_filters/__init__.py' 2023-02-01T13:30:39,940 adding 'resolwe_bio/expression_filters/relation.py' 2023-02-01T13:30:39,942 adding 'resolwe_bio/expression_filters/sample.py' 2023-02-01T13:30:39,946 adding 'resolwe_bio/fixtures/relationtypes.yaml' 2023-02-01T13:30:39,950 adding 'resolwe_bio/kb/__init__.py' 2023-02-01T13:30:39,952 adding 'resolwe_bio/kb/admin.py' 2023-02-01T13:30:39,955 adding 'resolwe_bio/kb/apps.py' 2023-02-01T13:30:39,957 adding 'resolwe_bio/kb/backends.py' 2023-02-01T13:30:39,960 adding 'resolwe_bio/kb/filters.py' 2023-02-01T13:30:39,962 adding 'resolwe_bio/kb/listener_plugin.py' 2023-02-01T13:30:39,965 adding 'resolwe_bio/kb/models.py' 2023-02-01T13:30:39,968 adding 'resolwe_bio/kb/pagination.py' 2023-02-01T13:30:39,971 adding 'resolwe_bio/kb/serializers.py' 2023-02-01T13:30:39,974 adding 'resolwe_bio/kb/views.py' 2023-02-01T13:30:39,977 adding 'resolwe_bio/kb/management/__init__.py' 2023-02-01T13:30:39,981 adding 'resolwe_bio/kb/management/commands/__init__.py' 2023-02-01T13:30:39,984 adding 'resolwe_bio/kb/management/commands/insert_features.py' 2023-02-01T13:30:39,988 adding 'resolwe_bio/kb/management/commands/insert_mappings.py' 2023-02-01T13:30:39,990 adding 'resolwe_bio/kb/management/commands/utils.py' 2023-02-01T13:30:39,994 adding 'resolwe_bio/kb/migrations/0001_initial.py' 2023-02-01T13:30:39,998 adding 'resolwe_bio/kb/migrations/0001_squashed_0012_update_feature_search.py' 2023-02-01T13:30:40,000 adding 'resolwe_bio/kb/migrations/0002_alter_field_max_length.py' 2023-02-01T13:30:40,003 adding 'resolwe_bio/kb/migrations/0003_add_map_index.py' 2023-02-01T13:30:40,005 adding 'resolwe_bio/kb/migrations/0004_add_unique_together.py' 2023-02-01T13:30:40,008 adding 'resolwe_bio/kb/migrations/0005_species.py' 2023-02-01T13:30:40,011 adding 'resolwe_bio/kb/migrations/0006_feature_fullname_300.py' 2023-02-01T13:30:40,013 adding 'resolwe_bio/kb/migrations/0007_feature_fullname_350.py' 2023-02-01T13:30:40,016 adding 'resolwe_bio/kb/migrations/0008_callable_defaults.py' 2023-02-01T13:30:40,018 adding 'resolwe_bio/kb/migrations/0009_full_text_search.py' 2023-02-01T13:30:40,021 adding 'resolwe_bio/kb/migrations/0010_update_indexes_constraints.py' 2023-02-01T13:30:40,023 adding 'resolwe_bio/kb/migrations/0011_feature_type_index.py' 2023-02-01T13:30:40,026 adding 'resolwe_bio/kb/migrations/0012_update_feature_search.py' 2023-02-01T13:30:40,029 adding 'resolwe_bio/kb/migrations/__init__.py' 2023-02-01T13:30:40,031 adding 'resolwe_bio/kb/migrations/reverse_triggers_feature.sql' 2023-02-01T13:30:40,033 adding 'resolwe_bio/kb/migrations/triggers_feature.sql' 2023-02-01T13:30:40,037 adding 'resolwe_bio/migrations/0001_squashed_0015_sample_indices.py' 2023-02-01T13:30:40,040 adding 'resolwe_bio/migrations/0002_metadata_table_type.py' 2023-02-01T13:30:40,042 adding 'resolwe_bio/migrations/0003_sample_indices.py' 2023-02-01T13:30:40,045 adding 'resolwe_bio/migrations/0004_merge_fastq_type.py' 2023-02-01T13:30:40,047 adding 'resolwe_bio/migrations/__init__.py' 2023-02-01T13:30:40,050 adding 'resolwe_bio/migrations/resolwe_indexes.sql' 2023-02-01T13:30:40,053 adding 'resolwe_bio/migrations/resolwe_indexes_2.sql' 2023-02-01T13:30:40,055 adding 'resolwe_bio/migrations/resolwe_indexes_3.sql' 2023-02-01T13:30:40,059 adding 'resolwe_bio/process/__init__.py' 2023-02-01T13:30:40,061 adding 'resolwe_bio/process/models.py' 2023-02-01T13:30:40,063 adding 'resolwe_bio/process/runtime.py' 2023-02-01T13:30:40,069 adding 'resolwe_bio/processes/WGBS/bsrate.py' 2023-02-01T13:30:40,072 adding 'resolwe_bio/processes/WGBS/hmr.yml' 2023-02-01T13:30:40,074 adding 'resolwe_bio/processes/WGBS/methcounts.yml' 2023-02-01T13:30:40,079 adding 'resolwe_bio/processes/WGBS/walt.yml' 2023-02-01T13:30:40,081 adding 'resolwe_bio/processes/WGBS/walt_index.py' 2023-02-01T13:30:40,085 adding 'resolwe_bio/processes/alignment/abstract.yml' 2023-02-01T13:30:40,093 adding 'resolwe_bio/processes/alignment/bowtie.yml' 2023-02-01T13:30:40,096 adding 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2023-02-01T13:30:40,441 adding 'resolwe_bio/processes/reads_processing/cutadapt.yml' 2023-02-01T13:30:40,444 adding 'resolwe_bio/processes/reads_processing/cutadapt_3prime.py' 2023-02-01T13:30:40,448 adding 'resolwe_bio/processes/reads_processing/cutadapt_corall.py' 2023-02-01T13:30:40,453 adding 'resolwe_bio/processes/reads_processing/markduplicates.py' 2023-02-01T13:30:40,458 adding 'resolwe_bio/processes/reads_processing/rnaseq_vc_preprocess.py' 2023-02-01T13:30:40,461 adding 'resolwe_bio/processes/reads_processing/split_ncigar.py' 2023-02-01T13:30:40,466 adding 'resolwe_bio/processes/reads_processing/trimgalore.py' 2023-02-01T13:30:40,472 adding 'resolwe_bio/processes/reads_processing/trimmomatic.yml' 2023-02-01T13:30:40,480 adding 'resolwe_bio/processes/reads_processing/xengsort.py' 2023-02-01T13:30:40,485 adding 'resolwe_bio/processes/samtools/samtools_coverage.py' 2023-02-01T13:30:40,488 adding 'resolwe_bio/processes/samtools/samtools_view.py' 2023-02-01T13:30:40,494 adding 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'resolwe_bio/processes/workflows/wgs_gvcf.py' 2023-02-01T13:30:40,751 adding 'resolwe_bio/tools/bamliquidator_table.py' 2023-02-01T13:30:40,754 adding 'resolwe_bio/tools/bed_file_corrections_genome_browsers.py' 2023-02-01T13:30:40,757 adding 'resolwe_bio/tools/convert_DE_excel_table.py' 2023-02-01T13:30:40,760 adding 'resolwe_bio/tools/create_gene_sets.py' 2023-02-01T13:30:40,762 adding 'resolwe_bio/tools/cufflinks_sample_groups.py' 2023-02-01T13:30:40,765 adding 'resolwe_bio/tools/cuffnorm_group_labels.py' 2023-02-01T13:30:40,767 adding 'resolwe_bio/tools/cuffnorm_output_table_headers.py' 2023-02-01T13:30:40,772 adding 'resolwe_bio/tools/demultiplex.py' 2023-02-01T13:30:40,775 adding 'resolwe_bio/tools/deseq.R' 2023-02-01T13:30:40,778 adding 'resolwe_bio/tools/detect_strandedness.sh' 2023-02-01T13:30:40,780 adding 'resolwe_bio/tools/diffexp_filtering.R' 2023-02-01T13:30:40,783 adding 'resolwe_bio/tools/etc.py' 2023-02-01T13:30:40,786 adding 'resolwe_bio/tools/expression2storage.py' 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'resolwe_bio/tools/mergebowtie2stats_paired.py' 2023-02-01T13:30:40,828 adding 'resolwe_bio/tools/mergebowtiestats.py' 2023-02-01T13:30:40,831 adding 'resolwe_bio/tools/mergeetc.py' 2023-02-01T13:30:40,833 adding 'resolwe_bio/tools/novel_splice_junctions.py' 2023-02-01T13:30:40,836 adding 'resolwe_bio/tools/parse_closest_features.R' 2023-02-01T13:30:40,838 adding 'resolwe_bio/tools/parse_cuffnorm.py' 2023-02-01T13:30:40,841 adding 'resolwe_bio/tools/parse_diffexp.py' 2023-02-01T13:30:40,844 adding 'resolwe_bio/tools/parse_encoding_type.py' 2023-02-01T13:30:40,846 adding 'resolwe_bio/tools/parse_library_type.py' 2023-02-01T13:30:40,849 adding 'resolwe_bio/tools/parse_star_expressions.py' 2023-02-01T13:30:40,852 adding 'resolwe_bio/tools/pca.py' 2023-02-01T13:30:40,854 adding 'resolwe_bio/tools/peak2geneScore.R' 2023-02-01T13:30:40,857 adding 'resolwe_bio/tools/plot_enhancers.py' 2023-02-01T13:30:40,860 adding 'resolwe_bio/tools/postprocess_snpeff.py' 2023-02-01T13:30:40,863 adding 'resolwe_bio/tools/run_edger.R' 2023-02-01T13:30:40,866 adding 'resolwe_bio/tools/sesame.R' 2023-02-01T13:30:40,871 adding 'resolwe_bio/tools/spikein_pairwise.py' 2023-02-01T13:30:40,873 adding 'resolwe_bio/tools/spikeins_report.py' 2023-02-01T13:30:40,876 adding 'resolwe_bio/tools/star_sj_to_bed12.py' 2023-02-01T13:30:40,879 adding 'resolwe_bio/tools/tximport_summarize.R' 2023-02-01T13:30:40,882 adding 'resolwe_bio/tools/unique_sample_names.py' 2023-02-01T13:30:40,884 adding 'resolwe_bio/tools/utils.py' 2023-02-01T13:30:40,887 adding 'resolwe_bio/tools/validate_fastq.py' 2023-02-01T13:30:40,891 adding 'resolwe_bio/tools/xexpression.py' 2023-02-01T13:30:40,894 adding 'resolwe_bio/utils/__init__.py' 2023-02-01T13:30:40,897 adding 'resolwe_bio/utils/filter.py' 2023-02-01T13:30:40,900 adding 'resolwe_bio/utils/test.py' 2023-02-01T13:30:40,907 adding 'resolwe_bio-49.0.0a2.dist-info/LICENSE' 2023-02-01T13:30:40,910 adding 'resolwe_bio-49.0.0a2.dist-info/METADATA' 2023-02-01T13:30:40,912 adding 'resolwe_bio-49.0.0a2.dist-info/WHEEL' 2023-02-01T13:30:40,914 adding 'resolwe_bio-49.0.0a2.dist-info/top_level.txt' 2023-02-01T13:30:40,927 adding 'resolwe_bio-49.0.0a2.dist-info/RECORD' 2023-02-01T13:30:40,962 removing build/bdist.linux-armv7l/wheel 2023-02-01T13:30:41,291 Building wheel for resolwe-bio (pyproject.toml): finished with status 'done' 2023-02-01T13:30:41,331 Created wheel for resolwe-bio: filename=resolwe_bio-49.0.0a2-py3-none-any.whl size=542741 sha256=8d46c00810cf13f106f780ca4d46dd6ff94db7f4d80e5133deb699ce2acdd138 2023-02-01T13:30:41,333 Stored in directory: /tmp/pip-ephem-wheel-cache-qju_59xz/wheels/59/ef/d5/d65aa6c27b9c78e5efb5b2cf891465dda09ce8df32c5e4ea8c 2023-02-01T13:30:41,386 Successfully built resolwe-bio 2023-02-01T13:30:41,430 Removed build tracker: '/tmp/pip-build-tracker-p92qmp_d'