2023-02-03T17:29:03,144 Created temporary directory: /tmp/pip-ephem-wheel-cache-kq6o2r_s
2023-02-03T17:29:03,146 Created temporary directory: /tmp/pip-build-tracker-_zr1cfud
2023-02-03T17:29:03,146 Initialized build tracking at /tmp/pip-build-tracker-_zr1cfud
2023-02-03T17:29:03,146 Created build tracker: /tmp/pip-build-tracker-_zr1cfud
2023-02-03T17:29:03,147 Entered build tracker: /tmp/pip-build-tracker-_zr1cfud
2023-02-03T17:29:03,147 Created temporary directory: /tmp/pip-wheel-2wesfuk7
2023-02-03T17:29:03,150 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-03T17:29:03,153 Created temporary directory: /tmp/pip-ephem-wheel-cache-r23ve2xh
2023-02-03T17:29:03,179 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-03T17:29:03,182 2 location(s) to search for versions of moleculekit:
2023-02-03T17:29:03,182 * https://pypi.org/simple/moleculekit/
2023-02-03T17:29:03,182 * https://www.piwheels.org/simple/moleculekit/
2023-02-03T17:29:03,183 Fetching project page and analyzing links: https://pypi.org/simple/moleculekit/
2023-02-03T17:29:03,183 Getting page https://pypi.org/simple/moleculekit/
2023-02-03T17:29:03,184 Found index url https://pypi.org/simple
2023-02-03T17:29:03,239 Fetched page https://pypi.org/simple/moleculekit/ as application/vnd.pypi.simple.v1+json
2023-02-03T17:29:03,272   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/91/e6/25b6853357dfef8a4026325e420d8213d34c17c078a2f13b60cbb6213ea3/moleculekit-0.1.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,273   Found link https://files.pythonhosted.org/packages/13/0f/a200e8e7632d3a521cfc7c15fa4d0270802efce40f98ac5a5cae58385b7e/moleculekit-0.1.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.4
2023-02-03T17:29:03,273   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/9f/a5/eac32fcb2e9ff0d30298aa4cec8e152c95d675c4dd1a1a5d7676986d4d75/moleculekit-0.1.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,273   Found link https://files.pythonhosted.org/packages/c5/6f/ae7d1b8513eb23ec0fa8e153c42fda0ee96f9e29c6e4808c5ff78c115e89/moleculekit-0.1.5.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.5
2023-02-03T17:29:03,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e2/51/0f4e4b95d0d5c16664ede7f2cd31e6d6003e9c940a8fbe28c74de91de627/moleculekit-0.1.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,274   Found link https://files.pythonhosted.org/packages/08/fa/bc1b5918a1715901fd0ea1e796de9e6647276943983962616f2ddceb1c3b/moleculekit-0.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.6
2023-02-03T17:29:03,274   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/49/59/ddf780e7a574dde727d5db8b93c41bcc3d19436a8ae9f468bad5ea48529e/moleculekit-0.1.7-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,274   Found link https://files.pythonhosted.org/packages/c7/cb/d1b609de2d59d10a60ca74c9d1a044534f608e323dc16a87e5bd77ee0eb0/moleculekit-0.1.7.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.7
2023-02-03T17:29:03,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5b/a4/59e6017c4e5b99be72d8e0eb6b6442061f338e309d91c25d607162298d11/moleculekit-0.1.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,275   Found link https://files.pythonhosted.org/packages/c0/1d/753c7461942457e39fb069504cdc381518a4ef18f486de0a42572236095e/moleculekit-0.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.8
2023-02-03T17:29:03,275   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/28/39/e4219020234475a17077f38ebcbdff236872d8e3a0455b376edb847f4141/moleculekit-0.1.9-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,276   Found link https://files.pythonhosted.org/packages/e0/c6/5d47b6257a3d1aca76d635d1dc8fffd6ed712fbe324bfeb2f2da47edda09/moleculekit-0.1.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.9
2023-02-03T17:29:03,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/12/42a0a156c8a51b2ef9de7c720cbcd226c1b0a7d13dce7dcdd4c34480e05f/moleculekit-0.1.12-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,276   Found link https://files.pythonhosted.org/packages/12/9d/ef12aeb7165210a6d06f5a735640db6c49cda2597bebb3584e72f7a2aee5/moleculekit-0.1.12.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.12
2023-02-03T17:29:03,276   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/e0/de/ddea29e806547e8743801bd5b44f5f4b62e96a3b6aa1b59e7ae3c183e65d/moleculekit-0.1.14-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,277   Found link https://files.pythonhosted.org/packages/0f/b8/5dce8ade2a03ba18558275d58f1f586fc78b76442ca923e02e05b7aa4638/moleculekit-0.1.14.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.14
2023-02-03T17:29:03,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/98/67/c911fd0aab052ed8866739c282be96070bcafee75cad331165f356d0bf11/moleculekit-0.1.15-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,277   Found link https://files.pythonhosted.org/packages/be/5c/b803aa60ac93136e6fce9ab52ec50aec246481c5db76892780152f769d75/moleculekit-0.1.15.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.15
2023-02-03T17:29:03,277   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/4f/30/78d34f8541a5e0e7488b6d59c43b29cf4d9f42467553fb0cee41312409c7/moleculekit-0.1.16-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,278   Found link https://files.pythonhosted.org/packages/d3/39/0774efc740b7e6a6969e084e0eb126483049a60229de80cc09a1a4b78011/moleculekit-0.1.16.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.16
2023-02-03T17:29:03,278   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/ca/d8/f9dd491ee5984f59dbd1206bb41062543e1a1664bb002d4b2675ec3f882c/moleculekit-0.1.17-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,278   Found link https://files.pythonhosted.org/packages/f6/27/b820e1158e448f35830265eeb023ec7d7cc72272136a31ec5365a893174f/moleculekit-0.1.17.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.17
2023-02-03T17:29:03,278   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0d/df/1d0dfd734e1d67c6ba1a1291b6f530c60eb3a65c25e2990d0fb62c73dbea/moleculekit-0.1.19-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,278   Found link https://files.pythonhosted.org/packages/6e/55/28d041ad7324e063e00ed2e0a5cd91d4c67e6cda3e62c24ab9c3ea2ad5dc/moleculekit-0.1.19.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.19
2023-02-03T17:29:03,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f0/f3/18f3b015e5fdf04c0243d63132d4d29ab807b608bda9cab6de505c060196/moleculekit-0.1.21-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,279   Found link https://files.pythonhosted.org/packages/d7/2f/510d466d4e507523c6f8bb5323a03351e0a9e6422b29ab7a9d7b34101484/moleculekit-0.1.21.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.21
2023-02-03T17:29:03,279   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/2c/83/5bdc26bbc9c0dc6b7fa54260134f5545c6f8c01e50b4cc94de02d0a2f295/moleculekit-0.1.22-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,279   Found link https://files.pythonhosted.org/packages/28/80/3c053d293b0aad5df512b8c7bf1ef111c621ee80bbe08ea83763ca004a85/moleculekit-0.1.22.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.22
2023-02-03T17:29:03,280   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/5d/ec/9e6438a424607cba93fe71b89ef89dbff35369f133ed76ded895861ab290/moleculekit-0.1.23-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,280   Found link https://files.pythonhosted.org/packages/6d/c3/680633af7541d2c7ecf2fde4dc9661f107efaf55688d3f41d15407cb2248/moleculekit-0.1.23.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.23
2023-02-03T17:29:03,280   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/0b/02/f2bbd133b7e76a60bdc1d92d10621ce9f60f8eeaf97ed7dacae2e216cb2b/moleculekit-0.1.24-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,280   Found link https://files.pythonhosted.org/packages/7f/f7/48b8b09fbf6e368925a186ef4cb874ae0abfae6d5b81bd2656502290add5/moleculekit-0.1.24.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.24
2023-02-03T17:29:03,281   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/1e/bd/24146e575547d1fc8bd24b4b7d9a57cbe14c357ebf85d638df6421412465/moleculekit-0.1.26-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,281   Found link https://files.pythonhosted.org/packages/f5/6e/a9dafd4b3b109011d156a6f7c726925669e42435b6049859f3a0a050a87f/moleculekit-0.1.26.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.26
2023-02-03T17:29:03,281   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/fe/63/a0e65b18866805186e3a4ba2b8ece20b73b85ec1ce6b3f8597e0c2508178/moleculekit-0.1.27-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,281   Found link https://files.pythonhosted.org/packages/70/7e/a01a54d9e88eaf00ec47989f360fb98d58e871d500aa28c44b9c7b8bd7ff/moleculekit-0.1.27.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.27
2023-02-03T17:29:03,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/f1/db/8f0879b07acae5356393297640e1116c459d28b59d19e1bd328da94e4b7a/moleculekit-0.1.29-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,282   Found link https://files.pythonhosted.org/packages/dc/10/67c6720423554f257425330caf21342c13c59bc86aee634f369b481dad7b/moleculekit-0.1.29.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.29
2023-02-03T17:29:03,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/83/f1/2cb963c0a74d919761e8516fe969330c122c9874426ff8eef7834b9b0c62/moleculekit-0.1.30-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,282   Found link https://files.pythonhosted.org/packages/a9/87/cd070158b979d89c02edf2a1deb98ced11e6a442952ed67ebb4f281d6700/moleculekit-0.1.30.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.30
2023-02-03T17:29:03,282   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cf/c4/f211cc80e281f1ee01040cfa490a65e874a54b5bedf2dfd73e3be6e72d93/moleculekit-0.1.31-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,283   Found link https://files.pythonhosted.org/packages/d7/8b/2b012f3371e5fceb875601e16c83a0ddfd5602d1cdceb953a4b36fc12200/moleculekit-0.1.31.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.31
2023-02-03T17:29:03,283   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/bf/2e/56178883cad4d2429d5cb5fb23d17be42663dea6da428df98f2b70be67a3/moleculekit-0.1.32-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,283   Found link https://files.pythonhosted.org/packages/97/34/992324fd9f1bb4d151b3383f601e3b69810e62c9d3530580ae8b43c4dcca/moleculekit-0.1.32.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.1.32
2023-02-03T17:29:03,283   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/7e/84/8e678afbcbd29c9b462973571bf3a043a7b5dbf7a98f1ac3dc82c3f5fc91/moleculekit-0.2.0-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,284   Found link https://files.pythonhosted.org/packages/10/f8/dfc9b84d16081239c0b6e3a2896e59db9f8b8617a67b7585e98789942324/moleculekit-0.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.0
2023-02-03T17:29:03,284   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/cb/a7/e706e1daa9d60d9ca9a96436564ec0612fe5fc850fdabad6e0c5174d52c5/moleculekit-0.2.1-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,284   Found link https://files.pythonhosted.org/packages/a8/ad/3c01c094324fcaf3a516aa3ab376ae4bec251dc2005f172217368e97b1db/moleculekit-0.2.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.1
2023-02-03T17:29:03,284   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/30/c3/e618404cdeb463f4f5f8fbfa1d5d45a81ea3c31cef86e9c6ca14a3d64589/moleculekit-0.2.2-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-03T17:29:03,285   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/3c/c6/baf4c6dafa42a7f055cd29cad8a79b2e99baaf474e8ddcff833e02a8c9a2/moleculekit-0.2.3-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,285   Found link https://files.pythonhosted.org/packages/92/3b/d42fa900fbc359ad0b7806344c2eb303f06336fc6bad439db5550483ce5c/moleculekit-0.2.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.3
2023-02-03T17:29:03,285   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/d7/72/5674ef2a697583774eb66559f23b37026098badcc7e14bb09247c112baec/moleculekit-0.2.4-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
2023-02-03T17:29:03,286   Found link https://files.pythonhosted.org/packages/7c/f3/5372063ddc10f57f1ea1aa29ab3f06d98d3d29c22d2a3d0c7c318ff7dc4a/moleculekit-0.2.4.tar.gz (from https://pypi.org/simple/moleculekit/), version: 0.2.4
2023-02-03T17:29:03,286   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/35/99/9bc21e28d9d4007623055b30fc43d18464649dfa39703ea80e9c32ba4607/moleculekit-0.2.5-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-03T17:29:03,286   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/97/2d/1b5aeecf49f225f13c39534c7a93181f14bbb295f4b0bb50019d7efda717/moleculekit-0.2.6-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-03T17:29:03,287   Skipping link: No binaries permitted for moleculekit: https://files.pythonhosted.org/packages/a3/85/452591c89b66659eaf24e216aef7818e3061a78bb1fc832f8616808949d4/moleculekit-0.2.8-py3-none-any.whl (from https://pypi.org/simple/moleculekit/)
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2023-02-03T17:29:03,311   Found link https://files.pythonhosted.org/packages/09/29/7e58bdf57dda487be8ab4c3719ebbf31db17ad65232fc9305a20eaa3c90c/moleculekit-1.1.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.0
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2023-02-03T17:29:03,312   Found link https://files.pythonhosted.org/packages/f4/53/156ee257b5781f55228ef884eec2b57cc368dbf37c4654315347af0e7a71/moleculekit-1.1.6.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.6
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2023-02-03T17:29:03,313   Found link https://files.pythonhosted.org/packages/eb/2e/c50f42aefc5f3510073bd5059723baff738a5ee171174441586000c444dc/moleculekit-1.1.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.1.8
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2023-02-03T17:29:03,313   Found link https://files.pythonhosted.org/packages/06/90/69685dad023515e231d8da7747793f33c497bb62496c4075e518f230da55/moleculekit-1.2.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.0
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2023-02-03T17:29:03,315   Found link https://files.pythonhosted.org/packages/29/f1/10cd916b3024b2efe08c06413dff5938859e01c8bc671cde8bf070758031/moleculekit-1.2.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.2.8
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2023-02-03T17:29:03,317   Found link https://files.pythonhosted.org/packages/1a/fd/3788664397288c8169d713da13ae2419a0534a9ee826d1ce718811e27569/moleculekit-1.3.8.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.8
2023-02-03T17:29:03,317   Found link https://files.pythonhosted.org/packages/fe/a6/b9b3e9ec27de783731911f111354a9d1e6cd766e47aeff934b769a415311/moleculekit-1.3.9.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.3.9
2023-02-03T17:29:03,318   Found link https://files.pythonhosted.org/packages/fd/8d/5420b8fc8713c9a27e74eb85aab9b758169f739c0d6aca1540d73582aba6/moleculekit-1.4.0.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.0
2023-02-03T17:29:03,318   Found link https://files.pythonhosted.org/packages/68/7e/cd023ea3b0a765a65611a8b103d51dbb55fc97bb9df335095d520ad46deb/moleculekit-1.4.1.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.1
2023-02-03T17:29:03,318   Found link https://files.pythonhosted.org/packages/21/ce/d98ddf9106565632f876b1b853bb23c64534e65884b9d3d73208c7fe17e6/moleculekit-1.4.2.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.2
2023-02-03T17:29:03,318   Found link https://files.pythonhosted.org/packages/f9/12/68450058da1b4f39328ce41f22cfb5a38717147b3e624cb76b225318dd96/moleculekit-1.4.3.tar.gz (from https://pypi.org/simple/moleculekit/), version: 1.4.3
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2023-02-03T17:29:03,319   Found link https://files.pythonhosted.org/packages/65/2b/f8fbac2b196d899066e4d26b78e62adc1f2356734b3de63da153e9b18e44/moleculekit-1.4.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.6
2023-02-03T17:29:03,320   Found link https://files.pythonhosted.org/packages/6b/80/69b1d49f78060edafdb9a5e49080f189c6d72a7a2a83f2567f7abfaf9fcb/moleculekit-1.4.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.7
2023-02-03T17:29:03,320   Found link https://files.pythonhosted.org/packages/91/bd/4e692bc271e6a957732a20347e43f0388e12ab60df6717a178b628f18fce/moleculekit-1.4.8.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.8
2023-02-03T17:29:03,321   Found link https://files.pythonhosted.org/packages/0b/22/49372d8ecca8baa50e08ca3971786e207825556920bd5b19697d085bf681/moleculekit-1.4.9.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.4.9
2023-02-03T17:29:03,322   Found link https://files.pythonhosted.org/packages/3a/52/c87b6f8651063e38a723e8506788475ecf32f2b2e67fcf42739e8737f120/moleculekit-1.5.0.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.0
2023-02-03T17:29:03,322   Found link https://files.pythonhosted.org/packages/e9/64/50b82745c79e8f28fb8c1615e637221dceb4af565af8e785b04b5c9bd7f0/moleculekit-1.5.1.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.1
2023-02-03T17:29:03,323   Found link https://files.pythonhosted.org/packages/3d/18/e249854f20e449b9890eca08ef37ccdb87f719b6ac0db8e9d2ca9c4eb890/moleculekit-1.5.2.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.2
2023-02-03T17:29:03,323   Found link https://files.pythonhosted.org/packages/3f/e8/860f3b89afd29b5ba405ab028f3d49ac22e95557b6b906e475c2f6558df5/moleculekit-1.5.3.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.3
2023-02-03T17:29:03,324   Found link https://files.pythonhosted.org/packages/e7/1e/8f982d3446852e3778250fc8af491eb3ceaf081b891eb7a4936776dfe730/moleculekit-1.5.4.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.4
2023-02-03T17:29:03,325   Found link https://files.pythonhosted.org/packages/46/81/f7be4e086eb469d0fda5d9be51c6fe2107d39c4127f64218774c40f5923a/moleculekit-1.5.5.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.5
2023-02-03T17:29:03,325   Found link https://files.pythonhosted.org/packages/d1/99/5866f661f25b1168804a5c26ab38edd26a7239d91b84c13fb129c1f84ab6/moleculekit-1.5.6.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.6
2023-02-03T17:29:03,326   Found link https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz (from https://pypi.org/simple/moleculekit/) (requires-python:>=3.8), version: 1.5.7
2023-02-03T17:29:03,326 Fetching project page and analyzing links: https://www.piwheels.org/simple/moleculekit/
2023-02-03T17:29:03,327 Getting page https://www.piwheels.org/simple/moleculekit/
2023-02-03T17:29:03,327 Found index url https://www.piwheels.org/simple
2023-02-03T17:29:03,501 Fetched page https://www.piwheels.org/simple/moleculekit/ as text/html
2023-02-03T17:29:03,546   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.6-cp39-cp39-linux_armv7l.whl#sha256=74f3b1d99a606d46d255c6b5bed074c5720349d2e2084e2f9c2491cd146df149 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.6-cp39-cp39-linux_armv6l.whl#sha256=74f3b1d99a606d46d255c6b5bed074c5720349d2e2084e2f9c2491cd146df149 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.5-cp39-cp39-linux_armv7l.whl#sha256=fcac9ef91095d0a7d660dd126ceb19282bfb11fa015d6e8cb3c9da09e65ffc21 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.5-cp39-cp39-linux_armv6l.whl#sha256=fcac9ef91095d0a7d660dd126ceb19282bfb11fa015d6e8cb3c9da09e65ffc21 (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.4-cp39-cp39-linux_armv7l.whl#sha256=1fc4c6ec32c23ebee660588de417f646cbfb358d0999778e2b3c0aa53708a6db (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,547   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.4-cp39-cp39-linux_armv6l.whl#sha256=1fc4c6ec32c23ebee660588de417f646cbfb358d0999778e2b3c0aa53708a6db (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,548   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.3-cp39-cp39-linux_armv7l.whl#sha256=a58a8161291ef6053c2da61de41173f39fae373796d435240cdb0916e437856b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
2023-02-03T17:29:03,548   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-1.5.3-cp39-cp39-linux_armv6l.whl#sha256=a58a8161291ef6053c2da61de41173f39fae373796d435240cdb0916e437856b (from https://www.piwheels.org/simple/moleculekit/) (requires-python:>=3.8)
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2023-02-03T17:29:03,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp39-cp39-linux_armv6l.whl#sha256=b1bfb9de96ef11fdd768cccd1b894300c470a7389f83c8cca3f42ac636f3dcb7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,555   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.7-cp37-cp37m-linux_armv7l.whl#sha256=8e98ed7e4f43a05739fbb98f22bc0aeabe5d6a76673b8883a4fa88c3762ba080 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-03T17:29:03,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp39-cp39-linux_armv7l.whl#sha256=de2e9946d86d3e6deb732605b7b9804d3ee229e0d1e869093c26731ff1cf6e49 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-03T17:29:03,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv7l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.6-cp37-cp37m-linux_armv6l.whl#sha256=881a09b6497cca181f77a3388648b0ec90974f79d8c81513666ac38dbed69842 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,556   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv7l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp39-cp39-linux_armv6l.whl#sha256=f42eb6c315d3242355c8e36090f1f77ed92b768cefb595178e81eb89fa5a79d5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv7l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.5-cp37-cp37m-linux_armv6l.whl#sha256=30013f87dd3dc0c9b99cc9862ac0d0be618fe63faa7c7c4623be9cdd86396624 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv7l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,557   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp39-cp39-linux_armv6l.whl#sha256=e123a257574ee84a677c70d154c26fb75cdf29cfb3f9491b309d8ad47e37f3c0 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv7l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.4-cp37-cp37m-linux_armv6l.whl#sha256=a30adf43b2972eb0763ce00b18dc4dffb61a74ac1da2391652cf53f73dba67ce (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv7l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp39-cp39-linux_armv6l.whl#sha256=c666ea91f79ecf6c6d99ca251e7f938e7e82208a01a91d39b827ba64eee4ce41 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,558   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv7l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.3-cp37-cp37m-linux_armv6l.whl#sha256=286faceca4683f35ce8e9aeefefdecee1c02150dfc9b7deb62015ce17f3f557c (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp39-cp39-linux_armv7l.whl#sha256=390edc2399f77605c97d9fc8db3b63f282ba297c67fe9514db91ebec945fa2d7 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-03T17:29:03,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv7l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,559   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.2-cp37-cp37m-linux_armv6l.whl#sha256=e7e709fde2552ca5cb602bf420ed89d740b1e75bd32c879ee33ffe3b747b109a (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv7l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp39-cp39-linux_armv6l.whl#sha256=aed227f0c49804421d71b6c949c0d24367a74207b8f855c59e4e73a89b5a93ed (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv7l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.1-cp37-cp37m-linux_armv6l.whl#sha256=ad67f1f622d2a2a49358691e3e784e48277aa09cf1f984ed60e847892a3413d7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,560   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv7l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp39-cp39-linux_armv6l.whl#sha256=7f76858d50e6bb4611f32f053be82003c583d01ad83aa44b6f220dce89a7856f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv7l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.9.0-cp37-cp37m-linux_armv6l.whl#sha256=ab05d1bc06d0d249cbb4871d51e6dca4b9e8474288d86326bd7dd603b9b99820 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv7l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp39-cp39-linux_armv6l.whl#sha256=0f20a256b92c66dbaac370cf1a01b885b10f1371beacaec65ec35ce8ac935afb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,561   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv7l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.9-cp37-cp37m-linux_armv6l.whl#sha256=34809734c61c1fcc4c4de1857dadfb84e726cbfe0dd0b60fce249166d29a3bb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv7l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp39-cp39-linux_armv6l.whl#sha256=a8a1cb7f5b851f5f58273e5d12aa871e5086f6bfd844f33f0b4bf20c83f429ec (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv7l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,562   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.6-cp37-cp37m-linux_armv6l.whl#sha256=93f57ab9c01697fb9f28ed39e4c5c32828e862bf410f556fdbc43c7a72825cb2 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv7l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp39-cp39-linux_armv6l.whl#sha256=de79a8099ce28793ecc89cf8dfbcb6542a270d00290c96903280f704e2ec22e7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv7l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.5-cp37-cp37m-linux_armv6l.whl#sha256=25d1bdfd25f377e21e8a522d9f3cd2ce3896cf857957c8ec876c69f4de8d53f5 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,563   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv7l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp39-cp39-linux_armv6l.whl#sha256=c1983524eecc8638287c4a1e09dda961635e861bf6f9342dc566a9f9a4c0b771 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv7l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.3-cp37-cp37m-linux_armv6l.whl#sha256=2d64935710bb05965f486f3bd9f258d8d479dc5c00dc1535ba5e285c8786dcf1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv7l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,564   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp39-cp39-linux_armv6l.whl#sha256=24cfa04ff95ecb68f6d261ba4176e979846a0424ba781a1e314ca233c5206ae7 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv7l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.2-cp37-cp37m-linux_armv6l.whl#sha256=3fa03496ffbd230b85c032f9e1ba3129efbd4c37f6509c6cfef258ce69ed6925 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv7l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp39-cp39-linux_armv6l.whl#sha256=41b03e81b9cd75c716643741a53b8d4d5aeb1633b5e07091c1a7355b6b44d233 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,565   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv7l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.1-cp37-cp37m-linux_armv6l.whl#sha256=584155aa2ddfa324fcd872934f8b25a296c40b34797209bb754f4a641a5b27eb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv7l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp39-cp39-linux_armv6l.whl#sha256=1b6361e98ea6ec0f3a7a4cce9ec9569a117c26deb95d0ce2bcea9d6f1f38d503 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv7l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,566   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.8.0-cp37-cp37m-linux_armv6l.whl#sha256=b0ac5fea57fee9d962de25688ffde053c705daa15588886ea6aa7d5ab0986077 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv7l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp39-cp39-linux_armv6l.whl#sha256=223cbac9f53d732be3d157f8e68c124c79439d057ec079594c681d7c5327f342 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv7l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.9-cp37-cp37m-linux_armv6l.whl#sha256=a6ee5c9ac5b2648bb87ca08a6491d955004770b58180224d6d24bdb8cec17458 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,567   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv7l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp39-cp39-linux_armv6l.whl#sha256=c18e44dbd9cf047134d440ff4fbb18722a3fdb0f348d431e8b7bed7dd398bd6e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv7l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.8-cp37-cp37m-linux_armv6l.whl#sha256=19e3b710f4af1a0cb530060979c4216d87f0bd8a71e9f41824cf3565abbcbbdb (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv7l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp39-cp39-linux_armv6l.whl#sha256=53a48e2a1781a9ae00e1f905778bad58715b08cff2ed4605148de1e481c9d50e (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,568   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv7l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.7-cp37-cp37m-linux_armv6l.whl#sha256=8e63b6afb6715f46aae20e77b81958cdc652a7b1b6d294c5d559f7f06d5a5106 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv7l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp39-cp39-linux_armv6l.whl#sha256=d5e470ed8514697a92a69cccdc99ddf6da22ddde2cc24b3e6ed949645778116f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv7l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,569   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.6-cp37-cp37m-linux_armv6l.whl#sha256=a85d0cfa7da9e3593e97f1c63822eb0a9733744fdeb19c3bbd09e1f4242e1d91 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv7l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp39-cp39-linux_armv6l.whl#sha256=55bb6252b29c31ce9b46ca6dc68ed50a4fbe0e44a1b3f8f6f57b13faf1c939c1 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv7l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.5-cp37-cp37m-linux_armv6l.whl#sha256=2670c23b960766e0d52c54881bf4a8a663345f17190e380f84a273d51c8cdb3f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,570   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv7l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp39-cp39-linux_armv6l.whl#sha256=8c575ac103cbab0a21e8ac9ee5d64f45634da6dcfa639e87f54e4afd333fe22f (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv7l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.7.4-cp37-cp37m-linux_armv6l.whl#sha256=c59aab79b14443a5c4194c3a08c69a2f1a98abedfda3217c0b15e5f694cb8dc3 (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,571   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.6.7-cp39-cp39-linux_armv7l.whl#sha256=6975400d079ca432444a3145d286b6b9c52b60c61acfbb1ad67be92f2b7a4585 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-03T17:29:03,579   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.17-py3-none-any.whl#sha256=cd99998c6c3ee48df7148cec7161f3696beede842d4e93bb9da19fa9e2c6c459 (from https://www.piwheels.org/simple/moleculekit/)
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2023-02-03T17:29:03,580   Skipping link: No binaries permitted for moleculekit: https://www.piwheels.org/simple/moleculekit/moleculekit-0.1.4-py3-none-any.whl#sha256=5784491ff294e145a00311f8239aaa0b92c12605db0508ee3e10469b80d4cadd (from https://www.piwheels.org/simple/moleculekit/)
2023-02-03T17:29:03,581 Skipping link: not a file: https://www.piwheels.org/simple/moleculekit/
2023-02-03T17:29:03,581 Skipping link: not a file: https://pypi.org/simple/moleculekit/
2023-02-03T17:29:03,617 Given no hashes to check 1 links for project 'moleculekit': discarding no candidates
2023-02-03T17:29:03,635 Collecting moleculekit==1.5.7
2023-02-03T17:29:03,637   Created temporary directory: /tmp/pip-unpack-udodloci
2023-02-03T17:29:04,283   Downloading moleculekit-1.5.7.tar.gz (5.8 MB)
2023-02-03T17:29:08,129   Added moleculekit==1.5.7 from https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz to build tracker '/tmp/pip-build-tracker-_zr1cfud'
2023-02-03T17:29:08,137   Created temporary directory: /tmp/pip-build-env-ywm44mcy
2023-02-03T17:29:08,145   Installing build dependencies: started
2023-02-03T17:29:08,146   Running command pip subprocess to install build dependencies
2023-02-03T17:29:09,362   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-03T17:29:09,748   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-03T17:29:09,772   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-03T17:29:11,379   Collecting setuptools
2023-02-03T17:29:11,479     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.1.0-py3-none-any.whl (1.1 MB)
2023-02-03T17:29:12,693   Collecting numpy>=1.18.5
2023-02-03T17:29:13,814     Using cached https://www.piwheels.org/simple/numpy/numpy-1.24.1-cp39-cp39-linux_armv7l.whl (12.3 MB)
2023-02-03T17:29:15,511   Collecting Cython>=0.29.21
2023-02-03T17:29:16,027     Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB)
2023-02-03T17:29:16,313   Collecting toml
2023-02-03T17:29:16,331     Using cached https://www.piwheels.org/simple/toml/toml-0.10.2-py2.py3-none-any.whl (16 kB)
2023-02-03T17:29:16,689   Collecting versioneer[toml]==0.26
2023-02-03T17:29:16,789     Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.26-py3-none-any.whl (44 kB)
2023-02-03T17:29:16,913   Collecting tomli
2023-02-03T17:29:16,930     Using cached https://www.piwheels.org/simple/tomli/tomli-2.0.1-py3-none-any.whl (12 kB)
2023-02-03T17:29:18,914   Installing collected packages: versioneer, tomli, toml, setuptools, numpy, Cython
2023-02-03T17:29:18,954     Creating /tmp/pip-build-env-ywm44mcy/overlay/bin
2023-02-03T17:29:18,957     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/versioneer to 755
2023-02-03T17:29:30,076     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/f2py to 755
2023-02-03T17:29:30,078     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/f2py3 to 755
2023-02-03T17:29:30,080     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/f2py3.9 to 755
2023-02-03T17:29:32,953     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/cygdb to 755
2023-02-03T17:29:32,955     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/cython to 755
2023-02-03T17:29:32,957     changing mode of /tmp/pip-build-env-ywm44mcy/overlay/bin/cythonize to 755
2023-02-03T17:29:32,986   Successfully installed Cython-0.29.33 numpy-1.24.1 setuptools-67.1.0 toml-0.10.2 tomli-2.0.1 versioneer-0.26

2023-02-03T17:29:33,001   [notice] A new release of pip available: 22.3 -> 23.0
2023-02-03T17:29:33,001   [notice] To update, run: python3 -m pip install --upgrade pip
2023-02-03T17:29:33,371   Installing build dependencies: finished with status 'done'
2023-02-03T17:29:33,376   Getting requirements to build wheel: started
2023-02-03T17:29:33,377   Running command Getting requirements to build wheel
2023-02-03T17:30:17,146   Compiling moleculekit/interactions/hbonds/hbonds.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,147   Compiling moleculekit/interactions/pipi/pipi.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,148   Compiling moleculekit/interactions/cationpi/cationpi.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,148   Compiling moleculekit/interactions/sigmahole/sigmahole.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,148   Compiling moleculekit/wrapping/wrapping.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,148   Compiling moleculekit/bondguesser_utils/bondguesser_utils.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,148   Compiling moleculekit/atomselect_utils/atomselect_utils.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,149   Compiling moleculekit/distance_utils/distance_utils.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,149   Compiling moleculekit/occupancy_utils/occupancy_utils.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,149   Compiling moleculekit/xtc_utils/xtc.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd.
2023-02-03T17:30:17,149   Compiling moleculekit/tmalign/tmalign_util.pyx because it depends on /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/Cython/Includes/libcpp/vector.pxd.
2023-02-03T17:30:17,149   [ 1/11] Cythonizing moleculekit/atomselect_utils/atomselect_utils.pyx
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2023-02-03T17:30:17,149   [ 3/11] Cythonizing moleculekit/distance_utils/distance_utils.pyx
2023-02-03T17:30:17,150   [ 4/11] Cythonizing moleculekit/interactions/cationpi/cationpi.pyx
2023-02-03T17:30:17,150   [ 5/11] Cythonizing moleculekit/interactions/hbonds/hbonds.pyx
2023-02-03T17:30:17,150   [ 6/11] Cythonizing moleculekit/interactions/pipi/pipi.pyx
2023-02-03T17:30:17,150   [ 7/11] Cythonizing moleculekit/interactions/sigmahole/sigmahole.pyx
2023-02-03T17:30:17,150   [ 8/11] Cythonizing moleculekit/occupancy_utils/occupancy_utils.pyx
2023-02-03T17:30:17,150   [ 9/11] Cythonizing moleculekit/tmalign/tmalign_util.pyx
2023-02-03T17:30:17,150   [10/11] Cythonizing moleculekit/wrapping/wrapping.pyx
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2023-02-03T17:30:17,224   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-03T17:30:17,225     warnings.warn(msg, _BetaConfiguration)
2023-02-03T17:30:17,365   running egg_info
2023-02-03T17:30:17,371   writing moleculekit.egg-info/PKG-INFO
2023-02-03T17:30:17,373   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-02-03T17:30:17,376   writing requirements to moleculekit.egg-info/requires.txt
2023-02-03T17:30:17,377   writing top-level names to moleculekit.egg-info/top_level.txt
2023-02-03T17:30:17,407   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:17,447   reading manifest template 'MANIFEST.in'
2023-02-03T17:30:17,731   no previously-included directories found matching 'moleculekit/test-data'
2023-02-03T17:30:17,733   no previously-included directories found matching 'moleculekit/tests'
2023-02-03T17:30:17,734   no previously-included directories found matching 'package'
2023-02-03T17:30:17,734   adding license file 'LICENSE'
2023-02-03T17:30:17,752   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:18,591   Getting requirements to build wheel: finished with status 'done'
2023-02-03T17:30:18,609   Installing backend dependencies: started
2023-02-03T17:30:18,610   Running command pip subprocess to install backend dependencies
2023-02-03T17:30:19,928   Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9)
2023-02-03T17:30:20,342   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-03T17:30:20,372   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-03T17:30:20,936   Collecting wheel
2023-02-03T17:30:20,955     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-02-03T17:30:22,522   Installing collected packages: wheel
2023-02-03T17:30:22,674     Creating /tmp/pip-build-env-ywm44mcy/normal/bin
2023-02-03T17:30:22,677     changing mode of /tmp/pip-build-env-ywm44mcy/normal/bin/wheel to 755
2023-02-03T17:30:22,690   Successfully installed wheel-0.38.4

2023-02-03T17:30:22,705   [notice] A new release of pip available: 22.3 -> 23.0
2023-02-03T17:30:22,705   [notice] To update, run: python3 -m pip install --upgrade pip
2023-02-03T17:30:22,915   Installing backend dependencies: finished with status 'done'
2023-02-03T17:30:22,918   Created temporary directory: /tmp/pip-modern-metadata-b_qk4cw3
2023-02-03T17:30:22,921   Preparing metadata (pyproject.toml): started
2023-02-03T17:30:22,922   Running command Preparing metadata (pyproject.toml)
2023-02-03T17:30:24,807   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-03T17:30:24,807     warnings.warn(msg, _BetaConfiguration)
2023-02-03T17:30:24,958   running dist_info
2023-02-03T17:30:24,960   creating /tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info
2023-02-03T17:30:24,967   writing /tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/PKG-INFO
2023-02-03T17:30:24,971   writing dependency_links to /tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/dependency_links.txt
2023-02-03T17:30:24,973   writing requirements to /tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/requires.txt
2023-02-03T17:30:24,975   writing top-level names to /tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/top_level.txt
2023-02-03T17:30:24,976   writing manifest file '/tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:25,012   reading manifest file '/tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:25,015   reading manifest template 'MANIFEST.in'
2023-02-03T17:30:25,299   no previously-included directories found matching 'moleculekit/test-data'
2023-02-03T17:30:25,300   no previously-included directories found matching 'moleculekit/tests'
2023-02-03T17:30:25,300   no previously-included directories found matching 'package'
2023-02-03T17:30:25,300   adding license file 'LICENSE'
2023-02-03T17:30:25,313   writing manifest file '/tmp/pip-modern-metadata-b_qk4cw3/moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:25,323   creating '/tmp/pip-modern-metadata-b_qk4cw3/moleculekit-1.5.7.dist-info'
2023-02-03T17:30:25,532   Preparing metadata (pyproject.toml): finished with status 'done'
2023-02-03T17:30:25,539   Source in /tmp/pip-wheel-2wesfuk7/moleculekit_9949a498f9da4c3e9c100ff660f4bad2 has version 1.5.7, which satisfies requirement moleculekit==1.5.7 from https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz
2023-02-03T17:30:25,540   Removed moleculekit==1.5.7 from https://files.pythonhosted.org/packages/25/45/e228ef66e7b03b1613382490f07c3db31c9713e3878eb9766781076b8209/moleculekit-1.5.7.tar.gz from build tracker '/tmp/pip-build-tracker-_zr1cfud'
2023-02-03T17:30:25,547 Created temporary directory: /tmp/pip-unpack-1qbxj6at
2023-02-03T17:30:25,548 Building wheels for collected packages: moleculekit
2023-02-03T17:30:25,553   Created temporary directory: /tmp/pip-wheel-pfw0elae
2023-02-03T17:30:25,553   Destination directory: /tmp/pip-wheel-pfw0elae
2023-02-03T17:30:25,556   Building wheel for moleculekit (pyproject.toml): started
2023-02-03T17:30:25,557   Running command Building wheel for moleculekit (pyproject.toml)
2023-02-03T17:30:27,267   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/config/pyprojecttoml.py:108: _BetaConfiguration: Support for `[tool.setuptools]` in `pyproject.toml` is still *beta*.
2023-02-03T17:30:27,268     warnings.warn(msg, _BetaConfiguration)
2023-02-03T17:30:27,401   running bdist_wheel
2023-02-03T17:30:27,417   running build
2023-02-03T17:30:27,417   running build_py
2023-02-03T17:30:27,427   creating build
2023-02-03T17:30:27,427   creating build/lib.linux-armv7l-cpython-39
2023-02-03T17:30:27,428   creating build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,429   copying moleculekit/opm.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,432   copying moleculekit/vmdgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,434   copying moleculekit/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,437   copying moleculekit/readers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,441   copying moleculekit/rcsb.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,443   copying moleculekit/dihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,445   copying moleculekit/_version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,447   copying moleculekit/home.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,449   copying moleculekit/pymolgraphics.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,450   copying moleculekit/bondguesser.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,453   copying moleculekit/molecule.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,458   copying moleculekit/vmdviewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,460   copying moleculekit/viewer.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,463   copying moleculekit/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,464   copying moleculekit/version.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,466   copying moleculekit/writers.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,469   copying moleculekit/periodictable.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,472   copying moleculekit/config.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,473   copying moleculekit/rdkitintegration.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,475   copying moleculekit/align.py -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:27,478   creating build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-03T17:30:27,479   copying moleculekit/ply/lex.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-03T17:30:27,482   copying moleculekit/ply/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-03T17:30:27,484   copying moleculekit/ply/yacc.py -> build/lib.linux-armv7l-cpython-39/moleculekit/ply
2023-02-03T17:30:27,489   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-03T17:30:27,490   copying moleculekit/interactions/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-03T17:30:27,492   copying moleculekit/interactions/interactions.py -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-03T17:30:27,496   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-03T17:30:27,497   copying moleculekit/atomselect/languageparser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-03T17:30:27,500   copying moleculekit/atomselect/atomselect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-03T17:30:27,503   copying moleculekit/atomselect/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-03T17:30:27,504   copying moleculekit/atomselect/analyze.py -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect
2023-02-03T17:30:27,508   creating build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,508   copying moleculekit/projections/metricdistance.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,512   copying moleculekit/projections/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,514   copying moleculekit/projections/metricgyration.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,517   copying moleculekit/projections/metricshell.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,519   copying moleculekit/projections/projection.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,521   copying moleculekit/projections/metricrmsd.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,523   copying moleculekit/projections/metricplumed2.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,526   copying moleculekit/projections/metriccoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,529   copying moleculekit/projections/metrictmscore.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,532   copying moleculekit/projections/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,534   copying moleculekit/projections/metricdihedral.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,537   copying moleculekit/projections/metricfluctuation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,540   copying moleculekit/projections/metricsecondarystructure.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,543   copying moleculekit/projections/metricsphericalcoordinate.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,545   copying moleculekit/projections/metricsasa.py -> build/lib.linux-armv7l-cpython-39/moleculekit/projections
2023-02-03T17:30:27,549   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,550   copying moleculekit/tools/crystalpacking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,552   copying moleculekit/tools/preparation.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,556   copying moleculekit/tools/detect.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,559   copying moleculekit/tools/docking.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,561   copying moleculekit/tools/atomtyper.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,564   copying moleculekit/tools/sequencestructuralalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,566   copying moleculekit/tools/hhblitsprofile.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,568   copying moleculekit/tools/graphalignment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,571   copying moleculekit/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,573   copying moleculekit/tools/voxeldescriptors.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,576   copying moleculekit/tools/moleculechecks.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,578   copying moleculekit/tools/preparation_customres.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,580   copying moleculekit/tools/autosegment.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools
2023-02-03T17:30:27,583   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-02-03T17:30:27,584   copying moleculekit/pdbx/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx
2023-02-03T17:30:27,587   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,588   copying moleculekit/smallmol/util.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,590   copying moleculekit/smallmol/smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,594   copying moleculekit/smallmol/smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,597   copying moleculekit/smallmol/test_smallmol.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,599   copying moleculekit/smallmol/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,601   copying moleculekit/smallmol/test_smallmollib.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol
2023-02-03T17:30:27,604   creating build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-03T17:30:27,605   copying moleculekit/tools/obabel_tools/obabel_cli.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-03T17:30:27,607   copying moleculekit/tools/obabel_tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools
2023-02-03T17:30:27,610   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-03T17:30:27,611   copying moleculekit/pdbx/tests/PdbxReaderTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-03T17:30:27,613   copying moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-03T17:30:27,616   copying moleculekit/pdbx/tests/PdbxWriterTests.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-03T17:30:27,618   copying moleculekit/pdbx/tests/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests
2023-02-03T17:30:27,620   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-03T17:30:27,621   copying moleculekit/pdbx/writer/PdbxWriter.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-03T17:30:27,624   copying moleculekit/pdbx/writer/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer
2023-02-03T17:30:27,626   creating build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-03T17:30:27,627   copying moleculekit/pdbx/reader/PdbxReader.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-03T17:30:27,630   copying moleculekit/pdbx/reader/PdbxContainers.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-03T17:30:27,633   copying moleculekit/pdbx/reader/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-03T17:30:27,635   copying moleculekit/pdbx/reader/PdbxParser.py -> build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader
2023-02-03T17:30:27,639   creating build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-03T17:30:27,640   copying moleculekit/smallmol/tools/test_tools.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-03T17:30:27,642   copying moleculekit/smallmol/tools/clustering.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-03T17:30:27,645   copying moleculekit/smallmol/tools/__init__.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-03T17:30:27,647   copying moleculekit/smallmol/tools/restrainedembed.py -> build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools
2023-02-03T17:30:27,649   running egg_info
2023-02-03T17:30:27,655   writing moleculekit.egg-info/PKG-INFO
2023-02-03T17:30:27,658   writing dependency_links to moleculekit.egg-info/dependency_links.txt
2023-02-03T17:30:27,659   writing requirements to moleculekit.egg-info/requires.txt
2023-02-03T17:30:27,661   writing top-level names to moleculekit.egg-info/top_level.txt
2023-02-03T17:30:27,680   reading manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:27,689   reading manifest template 'MANIFEST.in'
2023-02-03T17:30:27,963   no previously-included directories found matching 'moleculekit/test-data'
2023-02-03T17:30:27,964   no previously-included directories found matching 'moleculekit/tests'
2023-02-03T17:30:27,965   no previously-included directories found matching 'package'
2023-02-03T17:30:27,965   adding license file 'LICENSE'
2023-02-03T17:30:27,982   writing manifest file 'moleculekit.egg-info/SOURCES.txt'
2023-02-03T17:30:27,994   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.atomselect_utils' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:27,994       !!


2023-02-03T17:30:27,994       ############################
2023-02-03T17:30:27,994       # Package would be ignored #
2023-02-03T17:30:27,994       ############################
2023-02-03T17:30:27,995       Python recognizes 'moleculekit.atomselect_utils' as an importable package,
2023-02-03T17:30:27,995       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:27,995       'moleculekit.atomselect_utils' has been automatically added to the distribution only
2023-02-03T17:30:27,995       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:27,995       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:27,995       Please make sure that 'moleculekit.atomselect_utils' is included as a package by using
2023-02-03T17:30:27,996       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:27,996       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:27,996       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:27,996       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:27,996       documentation page.


2023-02-03T17:30:27,996   !!

2023-02-03T17:30:27,997     check.warn(importable)
2023-02-03T17:30:27,997   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.bondguesser_utils' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:27,997       !!


2023-02-03T17:30:27,997       ############################
2023-02-03T17:30:27,997       # Package would be ignored #
2023-02-03T17:30:27,998       ############################
2023-02-03T17:30:27,998       Python recognizes 'moleculekit.bondguesser_utils' as an importable package,
2023-02-03T17:30:27,998       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:27,998       'moleculekit.bondguesser_utils' has been automatically added to the distribution only
2023-02-03T17:30:27,998       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:27,998       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:27,998       Please make sure that 'moleculekit.bondguesser_utils' is included as a package by using
2023-02-03T17:30:27,999       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:27,999       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:27,999       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:27,999       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:27,999       documentation page.


2023-02-03T17:30:27,999   !!

2023-02-03T17:30:28,000     check.warn(importable)
2023-02-03T17:30:28,000   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.distance_utils' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,000       !!


2023-02-03T17:30:28,000       ############################
2023-02-03T17:30:28,000       # Package would be ignored #
2023-02-03T17:30:28,000       ############################
2023-02-03T17:30:28,001       Python recognizes 'moleculekit.distance_utils' as an importable package,
2023-02-03T17:30:28,001       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,001       'moleculekit.distance_utils' has been automatically added to the distribution only
2023-02-03T17:30:28,001       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,001       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,001       Please make sure that 'moleculekit.distance_utils' is included as a package by using
2023-02-03T17:30:28,001       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,002       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,002       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,002       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,002       documentation page.


2023-02-03T17:30:28,002   !!

2023-02-03T17:30:28,003     check.warn(importable)
2023-02-03T17:30:28,003   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.cationpi' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,003       !!


2023-02-03T17:30:28,003       ############################
2023-02-03T17:30:28,003       # Package would be ignored #
2023-02-03T17:30:28,003       ############################
2023-02-03T17:30:28,003       Python recognizes 'moleculekit.interactions.cationpi' as an importable package,
2023-02-03T17:30:28,003       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,004       'moleculekit.interactions.cationpi' has been automatically added to the distribution only
2023-02-03T17:30:28,004       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,004       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,004       Please make sure that 'moleculekit.interactions.cationpi' is included as a package by using
2023-02-03T17:30:28,004       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,004       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,004       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,005       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,005       documentation page.


2023-02-03T17:30:28,005   !!

2023-02-03T17:30:28,005     check.warn(importable)
2023-02-03T17:30:28,005   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.hbonds' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,006       !!


2023-02-03T17:30:28,006       ############################
2023-02-03T17:30:28,006       # Package would be ignored #
2023-02-03T17:30:28,006       ############################
2023-02-03T17:30:28,006       Python recognizes 'moleculekit.interactions.hbonds' as an importable package,
2023-02-03T17:30:28,006       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,007       'moleculekit.interactions.hbonds' has been automatically added to the distribution only
2023-02-03T17:30:28,007       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,007       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,007       Please make sure that 'moleculekit.interactions.hbonds' is included as a package by using
2023-02-03T17:30:28,007       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,007       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,007       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,008       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,008       documentation page.


2023-02-03T17:30:28,008   !!

2023-02-03T17:30:28,008     check.warn(importable)
2023-02-03T17:30:28,008   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.pipi' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,008       !!


2023-02-03T17:30:28,009       ############################
2023-02-03T17:30:28,009       # Package would be ignored #
2023-02-03T17:30:28,009       ############################
2023-02-03T17:30:28,009       Python recognizes 'moleculekit.interactions.pipi' as an importable package,
2023-02-03T17:30:28,009       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,009       'moleculekit.interactions.pipi' has been automatically added to the distribution only
2023-02-03T17:30:28,010       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,010       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,010       Please make sure that 'moleculekit.interactions.pipi' is included as a package by using
2023-02-03T17:30:28,010       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,010       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,010       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,010       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,011       documentation page.


2023-02-03T17:30:28,011   !!

2023-02-03T17:30:28,011     check.warn(importable)
2023-02-03T17:30:28,011   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.interactions.sigmahole' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,011       !!


2023-02-03T17:30:28,012       ############################
2023-02-03T17:30:28,012       # Package would be ignored #
2023-02-03T17:30:28,012       ############################
2023-02-03T17:30:28,012       Python recognizes 'moleculekit.interactions.sigmahole' as an importable package,
2023-02-03T17:30:28,012       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,012       'moleculekit.interactions.sigmahole' has been automatically added to the distribution only
2023-02-03T17:30:28,012       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,012       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,013       Please make sure that 'moleculekit.interactions.sigmahole' is included as a package by using
2023-02-03T17:30:28,013       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,013       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,013       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,013       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,013       documentation page.


2023-02-03T17:30:28,014   !!

2023-02-03T17:30:28,014     check.warn(importable)
2023-02-03T17:30:28,014   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.occupancy_utils' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,014       !!


2023-02-03T17:30:28,014       ############################
2023-02-03T17:30:28,015       # Package would be ignored #
2023-02-03T17:30:28,015       ############################
2023-02-03T17:30:28,015       Python recognizes 'moleculekit.occupancy_utils' as an importable package,
2023-02-03T17:30:28,015       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,015       'moleculekit.occupancy_utils' has been automatically added to the distribution only
2023-02-03T17:30:28,015       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,015       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,016       Please make sure that 'moleculekit.occupancy_utils' is included as a package by using
2023-02-03T17:30:28,016       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,016       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,016       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,016       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,016       documentation page.


2023-02-03T17:30:28,017   !!

2023-02-03T17:30:28,017     check.warn(importable)
2023-02-03T17:30:28,017   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,017       !!


2023-02-03T17:30:28,018       ############################
2023-02-03T17:30:28,018       # Package would be ignored #
2023-02-03T17:30:28,018       ############################
2023-02-03T17:30:28,018       Python recognizes 'moleculekit.share' as an importable package,
2023-02-03T17:30:28,018       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,018       'moleculekit.share' has been automatically added to the distribution only
2023-02-03T17:30:28,018       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,018       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,019       Please make sure that 'moleculekit.share' is included as a package by using
2023-02-03T17:30:28,019       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,019       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,019       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,019       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,019       documentation page.


2023-02-03T17:30:28,020   !!

2023-02-03T17:30:28,020     check.warn(importable)
2023-02-03T17:30:28,020   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.atomselect' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,020       !!


2023-02-03T17:30:28,020       ############################
2023-02-03T17:30:28,020       # Package would be ignored #
2023-02-03T17:30:28,021       ############################
2023-02-03T17:30:28,021       Python recognizes 'moleculekit.share.atomselect' as an importable package,
2023-02-03T17:30:28,021       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,021       'moleculekit.share.atomselect' has been automatically added to the distribution only
2023-02-03T17:30:28,021       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,021       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,021       Please make sure that 'moleculekit.share.atomselect' is included as a package by using
2023-02-03T17:30:28,022       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,022       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,022       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,022       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,022       documentation page.


2023-02-03T17:30:28,022   !!

2023-02-03T17:30:28,023     check.warn(importable)
2023-02-03T17:30:28,023   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.share.pdb2pqr.residues' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,023       !!


2023-02-03T17:30:28,023       ############################
2023-02-03T17:30:28,023       # Package would be ignored #
2023-02-03T17:30:28,023       ############################
2023-02-03T17:30:28,023       Python recognizes 'moleculekit.share.pdb2pqr.residues' as an importable package,
2023-02-03T17:30:28,024       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,024       'moleculekit.share.pdb2pqr.residues' has been automatically added to the distribution only
2023-02-03T17:30:28,024       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,024       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,024       Please make sure that 'moleculekit.share.pdb2pqr.residues' is included as a package by using
2023-02-03T17:30:28,024       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,024       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,025       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,025       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,025       documentation page.


2023-02-03T17:30:28,025   !!

2023-02-03T17:30:28,025     check.warn(importable)
2023-02-03T17:30:28,026   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,026       !!


2023-02-03T17:30:28,026       ############################
2023-02-03T17:30:28,026       # Package would be ignored #
2023-02-03T17:30:28,026       ############################
2023-02-03T17:30:28,026       Python recognizes 'moleculekit.tmalign' as an importable package,
2023-02-03T17:30:28,026       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,027       'moleculekit.tmalign' has been automatically added to the distribution only
2023-02-03T17:30:28,027       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,027       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,027       Please make sure that 'moleculekit.tmalign' is included as a package by using
2023-02-03T17:30:28,027       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,027       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,027       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,028       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,028       documentation page.


2023-02-03T17:30:28,028   !!

2023-02-03T17:30:28,028     check.warn(importable)
2023-02-03T17:30:28,028   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.include' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,028       !!


2023-02-03T17:30:28,029       ############################
2023-02-03T17:30:28,029       # Package would be ignored #
2023-02-03T17:30:28,029       ############################
2023-02-03T17:30:28,029       Python recognizes 'moleculekit.tmalign.include' as an importable package,
2023-02-03T17:30:28,029       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,029       'moleculekit.tmalign.include' has been automatically added to the distribution only
2023-02-03T17:30:28,029       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,030       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,030       Please make sure that 'moleculekit.tmalign.include' is included as a package by using
2023-02-03T17:30:28,030       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,030       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,030       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,030       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,030       documentation page.


2023-02-03T17:30:28,031   !!

2023-02-03T17:30:28,031     check.warn(importable)
2023-02-03T17:30:28,031   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.tmalign.src' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,031       !!


2023-02-03T17:30:28,032       ############################
2023-02-03T17:30:28,032       # Package would be ignored #
2023-02-03T17:30:28,032       ############################
2023-02-03T17:30:28,032       Python recognizes 'moleculekit.tmalign.src' as an importable package,
2023-02-03T17:30:28,032       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,032       'moleculekit.tmalign.src' has been automatically added to the distribution only
2023-02-03T17:30:28,032       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,032       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,033       Please make sure that 'moleculekit.tmalign.src' is included as a package by using
2023-02-03T17:30:28,033       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,033       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,033       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,033       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,033       documentation page.


2023-02-03T17:30:28,034   !!

2023-02-03T17:30:28,034     check.warn(importable)
2023-02-03T17:30:28,034   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.wrapping' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,034       !!


2023-02-03T17:30:28,035       ############################
2023-02-03T17:30:28,035       # Package would be ignored #
2023-02-03T17:30:28,035       ############################
2023-02-03T17:30:28,035       Python recognizes 'moleculekit.wrapping' as an importable package,
2023-02-03T17:30:28,035       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,035       'moleculekit.wrapping' has been automatically added to the distribution only
2023-02-03T17:30:28,036       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,036       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,036       Please make sure that 'moleculekit.wrapping' is included as a package by using
2023-02-03T17:30:28,036       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,036       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,036       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,037       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,037       documentation page.


2023-02-03T17:30:28,037   !!

2023-02-03T17:30:28,037     check.warn(importable)
2023-02-03T17:30:28,037   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,038       !!


2023-02-03T17:30:28,038       ############################
2023-02-03T17:30:28,038       # Package would be ignored #
2023-02-03T17:30:28,038       ############################
2023-02-03T17:30:28,038       Python recognizes 'moleculekit.xtc_utils' as an importable package,
2023-02-03T17:30:28,039       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,039       'moleculekit.xtc_utils' has been automatically added to the distribution only
2023-02-03T17:30:28,039       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,039       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,039       Please make sure that 'moleculekit.xtc_utils' is included as a package by using
2023-02-03T17:30:28,039       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,040       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,040       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,040       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,040       documentation page.


2023-02-03T17:30:28,040   !!

2023-02-03T17:30:28,041     check.warn(importable)
2023-02-03T17:30:28,041   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.include' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,041       !!


2023-02-03T17:30:28,041       ############################
2023-02-03T17:30:28,041       # Package would be ignored #
2023-02-03T17:30:28,041       ############################
2023-02-03T17:30:28,042       Python recognizes 'moleculekit.xtc_utils.include' as an importable package,
2023-02-03T17:30:28,042       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,042       'moleculekit.xtc_utils.include' has been automatically added to the distribution only
2023-02-03T17:30:28,042       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,042       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,042       Please make sure that 'moleculekit.xtc_utils.include' is included as a package by using
2023-02-03T17:30:28,042       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,043       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,043       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,043       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,043       documentation page.


2023-02-03T17:30:28,043   !!

2023-02-03T17:30:28,044     check.warn(importable)
2023-02-03T17:30:28,044   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'moleculekit.xtc_utils.src' as data is deprecated, please list it in `packages`.
2023-02-03T17:30:28,044       !!


2023-02-03T17:30:28,044       ############################
2023-02-03T17:30:28,044       # Package would be ignored #
2023-02-03T17:30:28,044       ############################
2023-02-03T17:30:28,044       Python recognizes 'moleculekit.xtc_utils.src' as an importable package,
2023-02-03T17:30:28,045       but it is not listed in the `packages` configuration of setuptools.

2023-02-03T17:30:28,045       'moleculekit.xtc_utils.src' has been automatically added to the distribution only
2023-02-03T17:30:28,045       because it may contain data files, but this behavior is likely to change
2023-02-03T17:30:28,045       in future versions of setuptools (and therefore is considered deprecated).

2023-02-03T17:30:28,045       Please make sure that 'moleculekit.xtc_utils.src' is included as a package by using
2023-02-03T17:30:28,045       the `packages` configuration field or the proper discovery methods
2023-02-03T17:30:28,046       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-03T17:30:28,046       instead of `find_packages(...)`/`find:`).

2023-02-03T17:30:28,046       You can read more about "package discovery" and "data files" on setuptools
2023-02-03T17:30:28,046       documentation page.


2023-02-03T17:30:28,046   !!

2023-02-03T17:30:28,047     check.warn(importable)
2023-02-03T17:30:28,047   copying moleculekit/logging.ini -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:28,047   copying moleculekit/vmd_wrapper -> build/lib.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:28,047   creating build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-03T17:30:28,047   copying moleculekit/atomselect_utils/atomselect_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-03T17:30:28,070   copying moleculekit/atomselect_utils/atomselect_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-03T17:30:28,073   creating build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-03T17:30:28,073   copying moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-03T17:30:28,104   copying moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-03T17:30:28,107   creating build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-03T17:30:28,108   copying moleculekit/distance_utils/distance_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-03T17:30:28,141   copying moleculekit/distance_utils/distance_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-03T17:30:28,157   creating build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-03T17:30:28,158   copying moleculekit/occupancy_utils/occupancy_utils.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-03T17:30:28,179   copying moleculekit/occupancy_utils/occupancy_utils.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-03T17:30:28,181   creating build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-03T17:30:28,182   copying moleculekit/share/ALA.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-03T17:30:28,185   copying moleculekit/share/backbone.cif -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-03T17:30:28,187   copying moleculekit/share/opm_sequences.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share
2023-02-03T17:30:28,459   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-02-03T17:30:28,459   copying moleculekit/share/atomselect/atomselect.json -> build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect
2023-02-03T17:30:28,462   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr
2023-02-03T17:30:28,462   creating build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,463   copying moleculekit/share/pdb2pqr/residues/.gitkeep -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,466   copying moleculekit/share/pdb2pqr/residues/004.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,468   copying moleculekit/share/pdb2pqr/residues/004.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,470   copying moleculekit/share/pdb2pqr/residues/03Y.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,472   copying moleculekit/share/pdb2pqr/residues/03Y.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,474   copying moleculekit/share/pdb2pqr/residues/0A1.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,476   copying moleculekit/share/pdb2pqr/residues/0A1.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,479   copying moleculekit/share/pdb2pqr/residues/0AF.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,481   copying moleculekit/share/pdb2pqr/residues/0AF.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,483   copying moleculekit/share/pdb2pqr/residues/0BN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,485   copying moleculekit/share/pdb2pqr/residues/0BN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,488   copying moleculekit/share/pdb2pqr/residues/1MH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,490   copying moleculekit/share/pdb2pqr/residues/1MH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,492   copying moleculekit/share/pdb2pqr/residues/2AS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,494   copying moleculekit/share/pdb2pqr/residues/2AS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,496   copying moleculekit/share/pdb2pqr/residues/2GX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,498   copying moleculekit/share/pdb2pqr/residues/2GX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,501   copying moleculekit/share/pdb2pqr/residues/2ML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,503   copying moleculekit/share/pdb2pqr/residues/2ML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,505   copying moleculekit/share/pdb2pqr/residues/2MR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,507   copying moleculekit/share/pdb2pqr/residues/2MR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,510   copying moleculekit/share/pdb2pqr/residues/4IN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,512   copying moleculekit/share/pdb2pqr/residues/4IN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,514   copying moleculekit/share/pdb2pqr/residues/4PH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,516   copying moleculekit/share/pdb2pqr/residues/4PH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,518   copying moleculekit/share/pdb2pqr/residues/4PQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,520   copying moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,523   copying moleculekit/share/pdb2pqr/residues/5JP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,525   copying moleculekit/share/pdb2pqr/residues/5JP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,527   copying moleculekit/share/pdb2pqr/residues/AA4.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,529   copying moleculekit/share/pdb2pqr/residues/AA4.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,531   copying moleculekit/share/pdb2pqr/residues/ABA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,533   copying moleculekit/share/pdb2pqr/residues/ABA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,535   copying moleculekit/share/pdb2pqr/residues/AHP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,537   copying moleculekit/share/pdb2pqr/residues/AHP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,540   copying moleculekit/share/pdb2pqr/residues/ALC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,542   copying moleculekit/share/pdb2pqr/residues/ALC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,544   copying moleculekit/share/pdb2pqr/residues/ALN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,546   copying moleculekit/share/pdb2pqr/residues/ALN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,548   copying moleculekit/share/pdb2pqr/residues/ALY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,551   copying moleculekit/share/pdb2pqr/residues/ALY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,553   copying moleculekit/share/pdb2pqr/residues/APD.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,556   copying moleculekit/share/pdb2pqr/residues/APD.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,558   copying moleculekit/share/pdb2pqr/residues/BB8.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,560   copying moleculekit/share/pdb2pqr/residues/BB8.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,562   copying moleculekit/share/pdb2pqr/residues/BCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,565   copying moleculekit/share/pdb2pqr/residues/BCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,567   copying moleculekit/share/pdb2pqr/residues/BTK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,569   copying moleculekit/share/pdb2pqr/residues/BTK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,572   copying moleculekit/share/pdb2pqr/residues/CCS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,574   copying moleculekit/share/pdb2pqr/residues/CCS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,576   copying moleculekit/share/pdb2pqr/residues/CGU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,578   copying moleculekit/share/pdb2pqr/residues/CGU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,580   copying moleculekit/share/pdb2pqr/residues/CSA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,583   copying moleculekit/share/pdb2pqr/residues/CSA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,585   copying moleculekit/share/pdb2pqr/residues/CSO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,587   copying moleculekit/share/pdb2pqr/residues/CSO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,589   copying moleculekit/share/pdb2pqr/residues/CSP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,592   copying moleculekit/share/pdb2pqr/residues/CSP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,594   copying moleculekit/share/pdb2pqr/residues/CSS.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,596   copying moleculekit/share/pdb2pqr/residues/CSS.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,598   copying moleculekit/share/pdb2pqr/residues/D4P.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,600   copying moleculekit/share/pdb2pqr/residues/D4P.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,602   copying moleculekit/share/pdb2pqr/residues/DA2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,605   copying moleculekit/share/pdb2pqr/residues/DA2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,607   copying moleculekit/share/pdb2pqr/residues/DAB.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,609   copying moleculekit/share/pdb2pqr/residues/DAB.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,612   copying moleculekit/share/pdb2pqr/residues/DAH.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,614   copying moleculekit/share/pdb2pqr/residues/DAH.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,616   copying moleculekit/share/pdb2pqr/residues/DPP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,618   copying moleculekit/share/pdb2pqr/residues/DPP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,620   copying moleculekit/share/pdb2pqr/residues/ESC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,623   copying moleculekit/share/pdb2pqr/residues/ESC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,625   copying moleculekit/share/pdb2pqr/residues/FGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,627   copying moleculekit/share/pdb2pqr/residues/FGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,629   copying moleculekit/share/pdb2pqr/residues/GHG.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,631   copying moleculekit/share/pdb2pqr/residues/GHG.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,633   copying moleculekit/share/pdb2pqr/residues/GME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,636   copying moleculekit/share/pdb2pqr/residues/GME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,638   copying moleculekit/share/pdb2pqr/residues/GNC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,640   copying moleculekit/share/pdb2pqr/residues/GNC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,642   copying moleculekit/share/pdb2pqr/residues/HHK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,644   copying moleculekit/share/pdb2pqr/residues/HHK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,647   copying moleculekit/share/pdb2pqr/residues/HLU.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,650   copying moleculekit/share/pdb2pqr/residues/HLU.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,652   copying moleculekit/share/pdb2pqr/residues/HLX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,654   copying moleculekit/share/pdb2pqr/residues/HLX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,657   copying moleculekit/share/pdb2pqr/residues/HOX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,659   copying moleculekit/share/pdb2pqr/residues/HOX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,661   copying moleculekit/share/pdb2pqr/residues/HPE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,663   copying moleculekit/share/pdb2pqr/residues/HPE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,665   copying moleculekit/share/pdb2pqr/residues/HQA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,668   copying moleculekit/share/pdb2pqr/residues/HQA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,670   copying moleculekit/share/pdb2pqr/residues/HTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,672   copying moleculekit/share/pdb2pqr/residues/HTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,674   copying moleculekit/share/pdb2pqr/residues/HYP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,677   copying moleculekit/share/pdb2pqr/residues/HYP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,679   copying moleculekit/share/pdb2pqr/residues/I2M.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,681   copying moleculekit/share/pdb2pqr/residues/I2M.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,684   copying moleculekit/share/pdb2pqr/residues/IGL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,686   copying moleculekit/share/pdb2pqr/residues/IGL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,688   copying moleculekit/share/pdb2pqr/residues/IIL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,691   copying moleculekit/share/pdb2pqr/residues/IIL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,693   copying moleculekit/share/pdb2pqr/residues/IML.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,696   copying moleculekit/share/pdb2pqr/residues/IML.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,698   copying moleculekit/share/pdb2pqr/residues/KYN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,700   copying moleculekit/share/pdb2pqr/residues/KYN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,703   copying moleculekit/share/pdb2pqr/residues/LME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,705   copying moleculekit/share/pdb2pqr/residues/LME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,707   copying moleculekit/share/pdb2pqr/residues/LMQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,709   copying moleculekit/share/pdb2pqr/residues/LMQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,711   copying moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,713   copying moleculekit/share/pdb2pqr/residues/LYZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,716   copying moleculekit/share/pdb2pqr/residues/M3L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,718   copying moleculekit/share/pdb2pqr/residues/M3L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,721   copying moleculekit/share/pdb2pqr/residues/ME0.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,723   copying moleculekit/share/pdb2pqr/residues/ME0.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,725   copying moleculekit/share/pdb2pqr/residues/MEA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,727   copying moleculekit/share/pdb2pqr/residues/MEA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,730   copying moleculekit/share/pdb2pqr/residues/MEN.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,732   copying moleculekit/share/pdb2pqr/residues/MEN.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,735   copying moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,737   copying moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,739   copying moleculekit/share/pdb2pqr/residues/MLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,742   copying moleculekit/share/pdb2pqr/residues/MLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,744   copying moleculekit/share/pdb2pqr/residues/MLY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,747   copying moleculekit/share/pdb2pqr/residues/MLY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,749   copying moleculekit/share/pdb2pqr/residues/MLZ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,751   copying moleculekit/share/pdb2pqr/residues/MLZ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,753   copying moleculekit/share/pdb2pqr/residues/MME.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,756   copying moleculekit/share/pdb2pqr/residues/MME.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,758   copying moleculekit/share/pdb2pqr/residues/MMO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,760   copying moleculekit/share/pdb2pqr/residues/MMO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,762   copying moleculekit/share/pdb2pqr/residues/MVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,764   copying moleculekit/share/pdb2pqr/residues/MVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,767   copying moleculekit/share/pdb2pqr/residues/NAL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,769   copying moleculekit/share/pdb2pqr/residues/NAL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,771   copying moleculekit/share/pdb2pqr/residues/NCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,773   copying moleculekit/share/pdb2pqr/residues/NCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,775   copying moleculekit/share/pdb2pqr/residues/NLE.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,777   copying moleculekit/share/pdb2pqr/residues/NLE.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,780   copying moleculekit/share/pdb2pqr/residues/NVA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,782   copying moleculekit/share/pdb2pqr/residues/NVA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,784   copying moleculekit/share/pdb2pqr/residues/NZC.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,786   copying moleculekit/share/pdb2pqr/residues/NZC.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,788   copying moleculekit/share/pdb2pqr/residues/OCY.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,790   copying moleculekit/share/pdb2pqr/residues/OCY.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,792   copying moleculekit/share/pdb2pqr/residues/OMX.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,794   copying moleculekit/share/pdb2pqr/residues/OMX.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,797   copying moleculekit/share/pdb2pqr/residues/ONL.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,799   copying moleculekit/share/pdb2pqr/residues/ONL.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,802   copying moleculekit/share/pdb2pqr/residues/ORM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,804   copying moleculekit/share/pdb2pqr/residues/ORM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,806   copying moleculekit/share/pdb2pqr/residues/P1L.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,808   copying moleculekit/share/pdb2pqr/residues/P1L.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,811   copying moleculekit/share/pdb2pqr/residues/PCA.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,813   copying moleculekit/share/pdb2pqr/residues/PCA.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,816   copying moleculekit/share/pdb2pqr/residues/PRK.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,818   copying moleculekit/share/pdb2pqr/residues/PRK.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,821   copying moleculekit/share/pdb2pqr/residues/PTR.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,823   copying moleculekit/share/pdb2pqr/residues/PTR.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,825   copying moleculekit/share/pdb2pqr/residues/SEP.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,827   copying moleculekit/share/pdb2pqr/residues/SEP.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,830   copying moleculekit/share/pdb2pqr/residues/TPO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,832   copying moleculekit/share/pdb2pqr/residues/TPO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,834   copying moleculekit/share/pdb2pqr/residues/TRO.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,837   copying moleculekit/share/pdb2pqr/residues/TRO.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,839   copying moleculekit/share/pdb2pqr/residues/TY2.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,841   copying moleculekit/share/pdb2pqr/residues/TY2.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,844   copying moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,846   copying moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,848   copying moleculekit/share/pdb2pqr/residues/YCM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,851   copying moleculekit/share/pdb2pqr/residues/YCM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,853   copying moleculekit/share/pdb2pqr/residues/YNM.dat -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,855   copying moleculekit/share/pdb2pqr/residues/YNM.xml -> build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues
2023-02-03T17:30:28,858   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-03T17:30:28,859   copying moleculekit/tmalign/tmalign_util.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-03T17:30:28,881   copying moleculekit/tmalign/tmalign_util.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-03T17:30:28,883   copying moleculekit/tmalign/tmalignlib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-03T17:30:28,886   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-02-03T17:30:28,887   copying moleculekit/tmalign/include/TMAlign.h -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include
2023-02-03T17:30:28,889   creating build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-03T17:30:28,890   copying moleculekit/tmalign/src/TMAlign.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-03T17:30:28,898   creating build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-03T17:30:28,899   copying moleculekit/wrapping/wrapping.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-03T17:30:28,921   copying moleculekit/wrapping/wrapping.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-03T17:30:28,923   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-03T17:30:28,924   copying moleculekit/xtc_utils/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-03T17:30:28,947   copying moleculekit/xtc_utils/xtc.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-03T17:30:28,949   copying moleculekit/xtc_utils/xtclib.pxd -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-03T17:30:28,951   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-03T17:30:28,952   copying moleculekit/xtc_utils/include/xdrfile.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-03T17:30:28,956   copying moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-03T17:30:28,958   copying moleculekit/xtc_utils/include/xtc.h -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include
2023-02-03T17:30:28,960   creating build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-03T17:30:28,961   copying moleculekit/xtc_utils/src/xdrfile.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-03T17:30:28,965   copying moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-03T17:30:28,968   copying moleculekit/xtc_utils/src/xtc.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-03T17:30:28,971   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-03T17:30:28,972   copying moleculekit/interactions/cationpi/cationpi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-03T17:30:28,994   copying moleculekit/interactions/cationpi/cationpi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-03T17:30:28,997   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-03T17:30:28,997   copying moleculekit/interactions/hbonds/hbonds.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-03T17:30:29,023   copying moleculekit/interactions/hbonds/hbonds.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-03T17:30:29,026   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-03T17:30:29,027   copying moleculekit/interactions/pipi/pipi.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-03T17:30:29,053   copying moleculekit/interactions/pipi/pipi.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-03T17:30:29,056   creating build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-03T17:30:29,057   copying moleculekit/interactions/sigmahole/sigmahole.cpp -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-03T17:30:29,082   copying moleculekit/interactions/sigmahole/sigmahole.pyx -> build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-03T17:30:29,095   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-02-03T17:30:29,095   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.7'
2023-02-03T17:30:29,096   running build_ext
2023-02-03T17:30:29,108   building 'moleculekit.interactions.hbonds' extension
2023-02-03T17:30:29,108   creating build/temp.linux-armv7l-cpython-39
2023-02-03T17:30:29,109   creating build/temp.linux-armv7l-cpython-39/moleculekit
2023-02-03T17:30:29,110   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions
2023-02-03T17:30:29,111   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds
2023-02-03T17:30:29,112   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/hbonds/hbonds.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -O3
2023-02-03T17:30:29,453   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:30:29,453                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:30:29,454                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:30:29,454                    from moleculekit/interactions/hbonds/hbonds.cpp:786:
2023-02-03T17:30:29,454   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:30:29,454      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:30:29,454         |  ^~~~~~~
2023-02-03T17:30:48,702   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:30:49,043   building 'moleculekit.interactions.pipi' extension
2023-02-03T17:30:49,044   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi
2023-02-03T17:30:49,045   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/pipi/pipi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -O3
2023-02-03T17:30:49,310   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:30:49,310                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:30:49,310                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:30:49,310                    from moleculekit/interactions/pipi/pipi.cpp:786:
2023-02-03T17:30:49,310   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:30:49,310      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:30:49,310         |  ^~~~~~~
2023-02-03T17:31:10,602   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:31:10,950   building 'moleculekit.interactions.cationpi' extension
2023-02-03T17:31:10,951   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi
2023-02-03T17:31:10,952   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/cationpi/cationpi.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -O3
2023-02-03T17:31:11,214   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:31:11,214                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:31:11,214                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:31:11,215                    from moleculekit/interactions/cationpi/cationpi.cpp:786:
2023-02-03T17:31:11,215   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:31:11,215      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:31:11,215         |  ^~~~~~~
2023-02-03T17:31:32,506   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:31:32,852   building 'moleculekit.interactions.sigmahole' extension
2023-02-03T17:31:32,853   creating build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole
2023-02-03T17:31:32,853   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/interactions/sigmahole/sigmahole.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -O3
2023-02-03T17:31:33,157   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:31:33,158                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:31:33,158                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:31:33,158                    from moleculekit/interactions/sigmahole/sigmahole.cpp:786:
2023-02-03T17:31:33,158   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:31:33,158      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:31:33,159         |  ^~~~~~~
2023-02-03T17:31:54,093   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:31:54,441   building 'moleculekit.wrapping' extension
2023-02-03T17:31:54,442   creating build/temp.linux-armv7l-cpython-39/moleculekit/wrapping
2023-02-03T17:31:54,443   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/wrapping/wrapping.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -O3
2023-02-03T17:31:54,705   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:31:54,705                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:31:54,705                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:31:54,705                    from moleculekit/wrapping/wrapping.cpp:786:
2023-02-03T17:31:54,705   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:31:54,706      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:31:54,706         |  ^~~~~~~
2023-02-03T17:32:12,268   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:32:12,501   building 'moleculekit.bondguesser_utils' extension
2023-02-03T17:32:12,502   creating build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils
2023-02-03T17:32:12,503   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/bondguesser_utils/bondguesser_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -O3
2023-02-03T17:32:12,772   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:32:12,772                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:32:12,773                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:32:12,773                    from moleculekit/bondguesser_utils/bondguesser_utils.cpp:786:
2023-02-03T17:32:12,773   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:32:12,773      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:32:12,773         |  ^~~~~~~
2023-02-03T17:32:13,990   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_make_grid_neighborlist_nonperiodic(PyObject*, __Pyx_memviewslice, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t, __pyx_t_11moleculekit_17bondguesser_utils_UINT32_t)’:
2023-02-03T17:32:13,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2954:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-03T17:32:13,991    2954 |   for (__pyx_t_3 = 0; __pyx_t_3 < __pyx_t_2; __pyx_t_3+=1) {
2023-02-03T17:32:13,991         |                       ~~~~~~~~~~^~~~~~~~~~~
2023-02-03T17:32:13,991   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2966:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-03T17:32:13,992    2966 |     for (__pyx_t_6 = 0; __pyx_t_6 < __pyx_t_5; __pyx_t_6+=1) {
2023-02-03T17:32:13,992         |                         ~~~~~~~~~~^~~~~~~~~~~
2023-02-03T17:32:13,992   moleculekit/bondguesser_utils/bondguesser_utils.cpp:2978:37: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} [-Wsign-compare]
2023-02-03T17:32:13,992    2978 |       for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) {
2023-02-03T17:32:13,993         |                           ~~~~~~~~~~^~~~~~~~~~~
2023-02-03T17:32:13,993   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3017:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,994    3017 |         __pyx_t_12 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:13,994         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,994   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3056:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,995    3056 |         __pyx_t_12 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-03T17:32:13,995         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,995   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3095:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,996    3095 |         __pyx_t_12 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:13,996         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,996   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3134:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,997    3134 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:13,997         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,997   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3140:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,997    3140 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-03T17:32:13,998         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,998   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3181:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,999    3181 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:13,999         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:13,999   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3187:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:13,999    3187 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,000         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,000   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3228:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,000    3228 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-03T17:32:14,001         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,001   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3234:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,001    3234 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,001         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,002   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3275:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,002    3275 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:14,003         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,003   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3328:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,004    3328 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,004         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,005   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3375:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,005    3375 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,005         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,006   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3416:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,006    3416 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:14,006         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,007   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3422:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,007    3422 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-03T17:32:14,007         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,007   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3428:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,008    3428 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,008         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,009   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3475:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,009    3475 |         __pyx_t_13 = ((__pyx_v_yi < (__pyx_v_yboxes - 1)) != 0);
2023-02-03T17:32:14,009         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,009   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3481:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,010    3481 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,010         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,011   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3522:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,011    3522 |         __pyx_t_13 = ((__pyx_v_xi < (__pyx_v_xboxes - 1)) != 0);
2023-02-03T17:32:14,011         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,012   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3534:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,012    3534 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,012         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,013   moleculekit/bondguesser_utils/bondguesser_utils.cpp:3587:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long unsigned int’ [-Wsign-compare]
2023-02-03T17:32:14,013    3587 |         __pyx_t_13 = ((__pyx_v_zi < (__pyx_v_zboxes - 1)) != 0);
2023-02-03T17:32:14,013         |                        ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,040   moleculekit/bondguesser_utils/bondguesser_utils.cpp: In function ‘PyObject* __pyx_pf_11moleculekit_17bondguesser_utils_2grid_bonds(PyObject*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, float, int, __Pyx_memviewslice, __Pyx_memviewslice)’:
2023-02-03T17:32:14,040   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4136:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-03T17:32:14,040    4136 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_n_boxes) != 0);
2023-02-03T17:32:14,040         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
2023-02-03T17:32:14,041   moleculekit/bondguesser_utils/bondguesser_utils.cpp:4173:38: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_17bondguesser_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-03T17:32:14,041    4173 |       __pyx_t_6 = ((__pyx_v_boxneigh == __pyx_v_boxidx) != 0);
2023-02-03T17:32:14,041         |                     ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-02-03T17:32:30,898   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:32:31,227   building 'moleculekit.atomselect_utils' extension
2023-02-03T17:32:31,228   creating build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils
2023-02-03T17:32:31,228   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/atomselect_utils/atomselect_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -O3
2023-02-03T17:32:31,492   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:32:31,492                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:32:31,493                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:32:31,493                    from moleculekit/atomselect_utils/atomselect_utils.cpp:786:
2023-02-03T17:32:31,493   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:32:31,493      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:32:31,493         |  ^~~~~~~
2023-02-03T17:32:32,880   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_connected_subfragment(int, int, const char*, const char*, const char*, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&)’:
2023-02-03T17:32:32,880   moleculekit/atomselect_utils/atomselect_utils.cpp:5406:162: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-03T17:32:32,880    5406 |       __pyx_t_3 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_2 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_resnum) != 0);
2023-02-03T17:32:32,880         |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
2023-02-03T17:32:32,885   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-02-03T17:32:32,885   moleculekit/atomselect_utils/atomselect_utils.cpp:5660:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-03T17:32:32,885    5660 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-02-03T17:32:32,885         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-03T17:32:32,890   moleculekit/atomselect_utils/atomselect_utils.cpp: In function ‘bool __pyx_f_11moleculekit_16atomselect_utils__find_subfragments_topologically(int, std::vector<std::vector<int> >&, std::vector<std::vector<int> >&, __Pyx_memviewslice, __Pyx_memviewslice, __Pyx_memviewslice, std::vector<std::__cxx11::basic_string<char> >&, __Pyx_memviewslice, std::vector<std::vector<int> >&)’:
2023-02-03T17:32:32,890   moleculekit/atomselect_utils/atomselect_utils.cpp:5926:164: warning: comparison of integer expressions of different signedness: ‘__pyx_t_11moleculekit_16atomselect_utils_UINT32_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
2023-02-03T17:32:32,890    5926 |         __pyx_t_6 = (((*((__pyx_t_11moleculekit_16atomselect_utils_UINT32_t *) ( /* dim=0 */ (__pyx_v_uq_resid.data + __pyx_t_5 * __pyx_v_uq_resid.strides[0]) ))) != __pyx_v_i) != 0);
2023-02-03T17:32:32,891         |                       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-03T17:32:56,078   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:32:56,432   building 'moleculekit.distance_utils' extension
2023-02-03T17:32:56,433   creating build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils
2023-02-03T17:32:56,434   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/distance_utils/distance_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -O3
2023-02-03T17:32:56,706   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:32:56,706                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:32:56,706                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:32:56,706                    from moleculekit/distance_utils/distance_utils.cpp:786:
2023-02-03T17:32:56,706   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:32:56,707      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:32:56,707         |  ^~~~~~~
2023-02-03T17:33:19,203   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:33:19,548   building 'moleculekit.occupancy_utils' extension
2023-02-03T17:33:19,549   creating build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils
2023-02-03T17:33:19,549   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/occupancy_utils/occupancy_utils.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -O3
2023-02-03T17:33:19,844   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:33:19,844                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:33:19,845                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:33:19,845                    from moleculekit/occupancy_utils/occupancy_utils.cpp:786:
2023-02-03T17:33:19,845   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:33:19,845      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:33:19,846         |  ^~~~~~~
2023-02-03T17:33:36,708   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:33:36,928   building 'moleculekit.xtc' extension
2023-02-03T17:33:36,929   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils
2023-02-03T17:33:36,929   creating build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src
2023-02-03T17:33:36,931   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o
2023-02-03T17:33:37,192   moleculekit/xtc_utils/src/xdrfile.cpp:66:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,193      66 |  "OK",
2023-02-03T17:33:37,193         |  ^~~~
2023-02-03T17:33:37,193   moleculekit/xtc_utils/src/xdrfile.cpp:67:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,193      67 |  "Header",
2023-02-03T17:33:37,193         |  ^~~~~~~~
2023-02-03T17:33:37,194   moleculekit/xtc_utils/src/xdrfile.cpp:68:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,194      68 |  "String",
2023-02-03T17:33:37,194         |  ^~~~~~~~
2023-02-03T17:33:37,194   moleculekit/xtc_utils/src/xdrfile.cpp:69:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,194      69 |  "Double",
2023-02-03T17:33:37,194         |  ^~~~~~~~
2023-02-03T17:33:37,195   moleculekit/xtc_utils/src/xdrfile.cpp:70:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,195      70 |  "Integer",
2023-02-03T17:33:37,195         |  ^~~~~~~~~
2023-02-03T17:33:37,195   moleculekit/xtc_utils/src/xdrfile.cpp:71:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,195      71 |  "Float",
2023-02-03T17:33:37,196         |  ^~~~~~~
2023-02-03T17:33:37,196   moleculekit/xtc_utils/src/xdrfile.cpp:72:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,196      72 |  "Unsigned integer",
2023-02-03T17:33:37,196         |  ^~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,196   moleculekit/xtc_utils/src/xdrfile.cpp:73:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,196      73 |  "Compressed 3D coordinate",
2023-02-03T17:33:37,197         |  ^~~~~~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,197   moleculekit/xtc_utils/src/xdrfile.cpp:74:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,197      74 |  "Closing file",
2023-02-03T17:33:37,197         |  ^~~~~~~~~~~~~~
2023-02-03T17:33:37,197   moleculekit/xtc_utils/src/xdrfile.cpp:75:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,197      75 |  "Magic number",
2023-02-03T17:33:37,198         |  ^~~~~~~~~~~~~~
2023-02-03T17:33:37,198   moleculekit/xtc_utils/src/xdrfile.cpp:76:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,198      76 |  "Not enough memory",
2023-02-03T17:33:37,198         |  ^~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,198   moleculekit/xtc_utils/src/xdrfile.cpp:77:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,198      77 |  "End of file",
2023-02-03T17:33:37,199         |  ^~~~~~~~~~~~~
2023-02-03T17:33:37,199   moleculekit/xtc_utils/src/xdrfile.cpp:78:2: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings]
2023-02-03T17:33:37,199      78 |  "File not found"
2023-02-03T17:33:37,199         |  ^~~~~~~~~~~~~~~~
2023-02-03T17:33:37,207   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofint(int)’:
2023-02-03T17:33:37,208   moleculekit/xtc_utils/src/xdrfile.cpp:459:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,208     459 |     while (size >= num && num_of_bits < 32)
2023-02-03T17:33:37,208         |            ~~~~~^~~~~~
2023-02-03T17:33:37,209   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int sizeofints(int, unsigned int*)’:
2023-02-03T17:33:37,209   moleculekit/xtc_utils/src/xdrfile.cpp:505:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,209     505 |     while (bytes[num_of_bytes] >= num)
2023-02-03T17:33:37,209         |            ~~~~~~~~~~~~~~~~~~~~^~~~~~
2023-02-03T17:33:37,212   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘void encodeints(int*, int, int, unsigned int*, unsigned int*)’:
2023-02-03T17:33:37,212   moleculekit/xtc_utils/src/xdrfile.cpp:614:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,212     614 |     if (num_of_bits >= num_of_bytes * 8)
2023-02-03T17:33:37,213         |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,213   moleculekit/xtc_utils/src/xdrfile.cpp:616:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,213     616 |   for (i = 0; i < num_of_bytes; i++)
2023-02-03T17:33:37,213         |               ~~^~~~~~~~~~~~~~
2023-02-03T17:33:37,214   moleculekit/xtc_utils/src/xdrfile.cpp:624:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,214     624 |   for (i = 0; i < num_of_bytes-1; i++)
2023-02-03T17:33:37,214         |               ~~^~~~~~~~~~~~~~~~
2023-02-03T17:33:37,215   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int decodebits(int*, int)’:
2023-02-03T17:33:37,216   moleculekit/xtc_utils/src/xdrfile.cpp:664:16: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,216     664 |   if (lastbits < num_of_bits)
2023-02-03T17:33:37,216         |       ~~~~~~~~~^~~~~~~~~~~~~
2023-02-03T17:33:37,220   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_float(float*, int*, float*, XDRFILE*)’:
2023-02-03T17:33:37,220   moleculekit/xtc_utils/src/xdrfile.cpp:785:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,220     785 |  if(size3>xfp->buf1size)
2023-02-03T17:33:37,220         |     ~~~~~^~~~~~~~~~~~~~
2023-02-03T17:33:37,222   moleculekit/xtc_utils/src/xdrfile.cpp:842:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,223     842 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-03T17:33:37,223         |                   ^
2023-02-03T17:33:37,226   moleculekit/xtc_utils/src/xdrfile.cpp:932:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,226     932 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,226         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,226   moleculekit/xtc_utils/src/xdrfile.cpp:935:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,227     935 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,227         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,227   moleculekit/xtc_utils/src/xdrfile.cpp:938:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,227     938 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,227         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,228   moleculekit/xtc_utils/src/xdrfile.cpp:945:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,228     945 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,228         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,229   moleculekit/xtc_utils/src/xdrfile.cpp:948:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,229     948 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,229         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,229   moleculekit/xtc_utils/src/xdrfile.cpp:951:17: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,230     951 |     if(countmjh >= size3 ) { return -1; }
2023-02-03T17:33:37,230         |        ~~~~~~~~~^~~~~~~~
2023-02-03T17:33:37,231   moleculekit/xtc_utils/src/xdrfile.cpp:756:17: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,231     756 |  int smallidx,  minidx, maxidx;
2023-02-03T17:33:37,231         |                 ^~~~~~
2023-02-03T17:33:37,231   moleculekit/xtc_utils/src/xdrfile.cpp:759:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,231     759 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-02-03T17:33:37,231         |                         ^~~~~~
2023-02-03T17:33:37,232   moleculekit/xtc_utils/src/xdrfile.cpp:763:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-02-03T17:33:37,232     763 |  int errval=1;
2023-02-03T17:33:37,232         |      ^~~~~~
2023-02-03T17:33:37,234   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_float(float*, int, float, XDRFILE*)’:
2023-02-03T17:33:37,235   moleculekit/xtc_utils/src/xdrfile.cpp:1011:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,235    1011 |  if(size3>xfp->buf1size)
2023-02-03T17:33:37,235         |     ~~~~~^~~~~~~~~~~~~~
2023-02-03T17:33:37,237   moleculekit/xtc_utils/src/xdrfile.cpp:1068:29: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,238    1068 |     countmjh++; if( countmjh> size3) { return -1; }
2023-02-03T17:33:37,238         |                     ~~~~~~~~^~~~~~~
2023-02-03T17:33:37,239   moleculekit/xtc_utils/src/xdrfile.cpp:1084:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,239    1084 |    countmjh++; if( countmjh> size3) { return -1; }
2023-02-03T17:33:37,239         |                    ~~~~~~~~^~~~~~~
2023-02-03T17:33:37,240   moleculekit/xtc_utils/src/xdrfile.cpp:1098:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,240    1098 |    countmjh++; if( countmjh> size3) { return -1; }
2023-02-03T17:33:37,240         |                    ~~~~~~~~^~~~~~~
2023-02-03T17:33:37,242   moleculekit/xtc_utils/src/xdrfile.cpp:1137:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,242    1137 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff)
2023-02-03T17:33:37,242         |                  ^
2023-02-03T17:33:37,243   moleculekit/xtc_utils/src/xdrfile.cpp:1143:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,243    1143 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-03T17:33:37,243         |                   ^
2023-02-03T17:33:37,247   moleculekit/xtc_utils/src/xdrfile.cpp:1275:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,248    1275 |  if(tmp==(unsigned int)buf2[0])
2023-02-03T17:33:37,248         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,248   moleculekit/xtc_utils/src/xdrfile.cpp:1001:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,248    1001 |  int errval;
2023-02-03T17:33:37,248         |      ^~~~~~
2023-02-03T17:33:37,252   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_decompress_coord_double(double*, int*, double*, XDRFILE*)’:
2023-02-03T17:33:37,252   moleculekit/xtc_utils/src/xdrfile.cpp:1316:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,252    1316 |  if(size3>xfp->buf1size)
2023-02-03T17:33:37,252         |     ~~~~~^~~~~~~~~~~~~~
2023-02-03T17:33:37,254   moleculekit/xtc_utils/src/xdrfile.cpp:1377:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,255    1377 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-03T17:33:37,255         |                   ^
2023-02-03T17:33:37,258   moleculekit/xtc_utils/src/xdrfile.cpp:1289:25: warning: variable ‘minidx’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,258    1289 |  int smallidx,  maxidx, minidx;
2023-02-03T17:33:37,258         |                         ^~~~~~
2023-02-03T17:33:37,259   moleculekit/xtc_utils/src/xdrfile.cpp:1292:25: warning: variable ‘larger’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,259    1292 |  int smallnum, smaller, larger, i, is_smaller, run;
2023-02-03T17:33:37,259         |                         ^~~~~~
2023-02-03T17:33:37,259   moleculekit/xtc_utils/src/xdrfile.cpp:1297:6: warning: unused variable ‘errval’ [-Wunused-variable]
2023-02-03T17:33:37,259    1297 |  int errval=1;
2023-02-03T17:33:37,259         |      ^~~~~~
2023-02-03T17:33:37,262   moleculekit/xtc_utils/src/xdrfile.cpp: In function ‘int xdrfile_compress_coord_double(double*, int, double, XDRFILE*)’:
2023-02-03T17:33:37,262   moleculekit/xtc_utils/src/xdrfile.cpp:1513:10: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,262    1513 |  if(size3>xfp->buf1size) {
2023-02-03T17:33:37,262         |     ~~~~~^~~~~~~~~~~~~~
2023-02-03T17:33:37,267   moleculekit/xtc_utils/src/xdrfile.cpp:1628:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,267    1628 |  while (smallidx < LASTIDX && magicints[smallidx] < mindiff) {
2023-02-03T17:33:37,267         |                  ^
2023-02-03T17:33:37,268   moleculekit/xtc_utils/src/xdrfile.cpp:1633:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2023-02-03T17:33:37,268    1633 |  maxidx = (LASTIDX<tmp) ? LASTIDX : tmp;
2023-02-03T17:33:37,268         |                   ^
2023-02-03T17:33:37,272   moleculekit/xtc_utils/src/xdrfile.cpp:1743:8: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2023-02-03T17:33:37,272    1743 |  if(tmp==(unsigned int)buf2[0])
2023-02-03T17:33:37,272         |     ~~~^~~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:37,273   moleculekit/xtc_utils/src/xdrfile.cpp:1504:6: warning: variable ‘errval’ set but not used [-Wunused-but-set-variable]
2023-02-03T17:33:37,273    1504 |  int errval=1;
2023-02-03T17:33:37,273         |      ^~~~~~
2023-02-03T17:33:39,525   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xdrfile_xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o
2023-02-03T17:33:39,797   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/src/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o
2023-02-03T17:33:40,439   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_new(char*, float*, float*, float*, int*, int, int)’:
2023-02-03T17:33:40,440   moleculekit/xtc_utils/src/xtc.cpp:207:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-02-03T17:33:40,440     207 |  int nf3 = nframes * 3; // Precalculate 3 * nframes for the coordinate lookup macro
2023-02-03T17:33:40,440         |      ^~~
2023-02-03T17:33:40,446   moleculekit/xtc_utils/src/xtc.cpp: In function ‘int xtc_write(char*, int, int, int*, float*, float*, float*)’:
2023-02-03T17:33:40,446   moleculekit/xtc_utils/src/xtc.cpp:418:6: warning: unused variable ‘nf3’ [-Wunused-variable]
2023-02-03T17:33:40,447     418 |  int nf3 = nframes * 3;
2023-02-03T17:33:40,447         |      ^~~
2023-02-03T17:33:40,451   moleculekit/xtc_utils/src/xtc.cpp: In function ‘void xtc_read_frame(char*, float*, float*, float*, int*, int, int, int, int)’:
2023-02-03T17:33:40,451   moleculekit/xtc_utils/src/xtc.cpp:491:6: warning: unused variable ‘reading_index’ [-Wunused-variable]
2023-02-03T17:33:40,451     491 |  int reading_index = 0;
2023-02-03T17:33:40,451         |      ^~~~~~~~~~~~~
2023-02-03T17:33:40,452   moleculekit/xtc_utils/src/xtc.cpp:492:6: warning: unused variable ‘writing_index’ [-Wunused-variable]
2023-02-03T17:33:40,452     492 |  int writing_index = 0;
2023-02-03T17:33:40,452         |      ^~~~~~~~~~~~~
2023-02-03T17:33:41,030   moleculekit/xtc_utils/src/xtc.cpp:532:20: warning: ‘garbage_natoms’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2023-02-03T17:33:41,030     532 |   frames = xtc_read(filename, garbage_natoms, &traj_nframes, &dt, &dstep);
2023-02-03T17:33:41,031         |            ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2023-02-03T17:33:41,230   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/xtc_utils/include/ -Imoleculekit/xtc_utils/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/xtc_utils/xtc.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o
2023-02-03T17:33:41,494   In file included from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1940,
2023-02-03T17:33:41,495                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
2023-02-03T17:33:41,495                    from /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5,
2023-02-03T17:33:41,495                    from moleculekit/xtc_utils/xtc.cpp:788:
2023-02-03T17:33:41,495   /tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
2023-02-03T17:33:41,495      17 | #warning "Using deprecated NumPy API, disable it with " \
2023-02-03T17:33:41,495         |  ^~~~~~~
2023-02-03T17:33:56,512   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.o build/temp.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:33:56,852   building 'moleculekit.tmalign' extension
2023-02-03T17:33:56,854   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign
2023-02-03T17:33:56,855   creating build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src
2023-02-03T17:33:56,856   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/src/TMAlign.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o -w
2023-02-03T17:34:26,722   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Imoleculekit/tmalign/include/ -Imoleculekit/tmalign/ -I/tmp/pip-build-env-ywm44mcy/overlay/lib/python3.9/site-packages/numpy/core/include -I/usr/include/python3.9 -c moleculekit/tmalign/tmalign_util.cpp -o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -w
2023-02-03T17:34:39,276   In file included from /usr/include/c++/10/vector:72,
2023-02-03T17:34:39,276                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-02-03T17:34:39,276   /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
2023-02-03T17:34:39,276   /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
2023-02-03T17:34:39,276     426 |       vector<_Tp, _Alloc>::
2023-02-03T17:34:39,277         |       ^~~~~~~~~~~~~~~~~~~
2023-02-03T17:34:39,773   In file included from /usr/include/c++/10/vector:67,
2023-02-03T17:34:39,773                    from moleculekit/tmalign/tmalign_util.cpp:802:
2023-02-03T17:34:39,773   /usr/include/c++/10/bits/stl_vector.h: In function ‘PyObject* __pyx_pw_11moleculekit_7tmalign_1tmalign(PyObject*, PyObject*, PyObject*)’:
2023-02-03T17:34:39,774   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-03T17:34:39,774    1198 |    _M_realloc_insert(end(), __x);
2023-02-03T17:34:39,774         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-03T17:34:39,774   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-03T17:34:39,774    1198 |    _M_realloc_insert(end(), __x);
2023-02-03T17:34:39,774         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-03T17:34:39,775   /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
2023-02-03T17:34:39,775    1198 |    _M_realloc_insert(end(), __x);
2023-02-03T17:34:39,775         |    ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
2023-02-03T17:34:41,954   arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.o build/temp.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so
2023-02-03T17:34:42,444   UPDATING build/lib.linux-armv7l-cpython-39/moleculekit/_version.py
2023-02-03T17:34:42,444   set build/lib.linux-armv7l-cpython-39/moleculekit/_version.py to '1.5.7'
2023-02-03T17:34:42,444   installing to build/bdist.linux-armv7l/wheel
2023-02-03T17:34:42,445   running install
2023-02-03T17:34:42,470   running install_lib
2023-02-03T17:34:42,478   creating build/bdist.linux-armv7l
2023-02-03T17:34:42,479   creating build/bdist.linux-armv7l/wheel
2023-02-03T17:34:42,481   creating build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,483   copying build/lib.linux-armv7l-cpython-39/moleculekit/opm.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,486   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,489   copying build/lib.linux-armv7l-cpython-39/moleculekit/util.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,492   copying build/lib.linux-armv7l-cpython-39/moleculekit/readers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,499   creating build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-03T17:34:42,500   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/lex.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-03T17:34:42,504   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-03T17:34:42,506   copying build/lib.linux-armv7l-cpython-39/moleculekit/ply/yacc.py -> build/bdist.linux-armv7l/wheel/moleculekit/ply
2023-02-03T17:34:42,512   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmd_wrapper -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,515   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,517   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-03T17:34:42,518   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-03T17:34:42,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi/pipi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/pipi
2023-02-03T17:34:42,544   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,576   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-03T17:34:42,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-03T17:34:42,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi/cationpi.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/cationpi
2023-02-03T17:34:42,603   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,605   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,638   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-03T17:34:42,640   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-03T17:34:42,670   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/sigmahole/sigmahole.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/sigmahole
2023-02-03T17:34:42,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,707   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,737   creating build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-03T17:34:42,737   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-03T17:34:42,760   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/hbonds/hbonds.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/interactions/hbonds
2023-02-03T17:34:42,762   copying build/lib.linux-armv7l-cpython-39/moleculekit/interactions/interactions.py -> build/bdist.linux-armv7l/wheel/moleculekit/interactions
2023-02-03T17:34:42,765   copying build/lib.linux-armv7l-cpython-39/moleculekit/rcsb.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/dihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/_version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,771   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-03T17:34:42,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-03T17:34:42,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils/atomselect_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect_utils
2023-02-03T17:34:42,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/home.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,805   creating build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-03T17:34:42,806   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-03T17:34:42,828   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping/wrapping.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/wrapping
2023-02-03T17:34:42,830   copying build/lib.linux-armv7l-cpython-39/moleculekit/pymolgraphics.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:42,832   creating build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-03T17:34:42,834   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr
2023-02-03T17:34:42,838   creating build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,839   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,843   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0AF.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,845   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,847   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,850   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IML.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,854   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,856   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,858   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BB8.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,860   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,863   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ESC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,865   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,867   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,869   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,871   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PCA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,873   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4IN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,875   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HPE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,877   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,879   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,881   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,887   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,889   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,891   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GHG.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,892   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,894   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,896   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,898   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,900   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,902   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/5JP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,904   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,906   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,908   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PTR.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,911   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2ML.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,915   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,918   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,920   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/D4P.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,929   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HOX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,932   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/I2M.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,934   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,936   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PH.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,938   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,941   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,943   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NZC.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/PRK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:42,956   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:42,960   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:42,962   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CGU.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:42,974   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:42,981   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,000   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,002   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,004   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,011   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/4PQ.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,013   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,017   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,019   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TYQ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HTR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/.gitkeep -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,056   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NLE.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,076   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,080   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/M3L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,082   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LME.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,086   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,088   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/FGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,092   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TY2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,097   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/OMX.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,099   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BTK.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,102   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MMO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,104   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/P1L.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,106   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/GNC.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,108   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MLE.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,110   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0BN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,112   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IIL.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,114   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,116   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ALN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,120   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ONL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,122   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NAL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,124   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ORM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,126   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/ABA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,128   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HYP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,130   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YCM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,135   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
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2023-02-03T17:34:43,139   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2GX.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,141   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,143   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/BCS.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,146   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HQA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,148   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DAB.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,150   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HHK.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,151   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/HLU.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,153   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MEN.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,155   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2MR.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,157   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AHP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,160   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,162   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/2AS.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,164   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DPP.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,166   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/IGL.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,168   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/SEP.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,170   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TRO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,172   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/APD.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,174   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,176   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/DA2.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,178   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/KYN.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,181   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,183   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/NCY.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,185   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/YNM.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,187   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/AA4.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,189   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/MVA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,191   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/LYZ.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,193   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/TPO.dat -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,195   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/03Y.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,197   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/0A1.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,201   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/pdb2pqr/residues/CSA.xml -> build/bdist.linux-armv7l/wheel/moleculekit/share/pdb2pqr/residues
2023-02-03T17:34:43,204   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/ALA.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-03T17:34:43,207   creating build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-02-03T17:34:43,208   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/atomselect/atomselect.json -> build/bdist.linux-armv7l/wheel/moleculekit/share/atomselect
2023-02-03T17:34:43,210   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/backbone.cif -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-03T17:34:43,212   copying build/lib.linux-armv7l-cpython-39/moleculekit/share/opm_sequences.json -> build/bdist.linux-armv7l/wheel/moleculekit/share
2023-02-03T17:34:43,521   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,548   creating build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-03T17:34:43,549   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-03T17:34:43,577   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils/distance_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/distance_utils
2023-02-03T17:34:43,580   copying build/lib.linux-armv7l-cpython-39/moleculekit/logging.ini -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,582   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,584   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,674   copying build/lib.linux-armv7l-cpython-39/moleculekit/molecule.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,679   creating build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-03T17:34:43,680   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-03T17:34:43,682   copying build/lib.linux-armv7l-cpython-39/moleculekit/bondguesser_utils/bondguesser_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/bondguesser_utils
2023-02-03T17:34:43,704   copying build/lib.linux-armv7l-cpython-39/moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,747   copying build/lib.linux-armv7l-cpython-39/moleculekit/vmdviewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,750   creating build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-03T17:34:43,751   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/languageparser.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-03T17:34:43,753   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/atomselect.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-03T17:34:43,756   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-03T17:34:43,757   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect/analyze.py -> build/bdist.linux-armv7l/wheel/moleculekit/atomselect
2023-02-03T17:34:43,760   creating build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,761   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdistance.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,764   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,767   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricgyration.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,769   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricshell.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,772   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/projection.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,773   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricrmsd.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,776   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricplumed2.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,779   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metriccoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,781   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metrictmscore.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,783   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,785   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricdihedral.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,788   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricfluctuation.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,790   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsecondarystructure.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,793   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsphericalcoordinate.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,795   copying build/lib.linux-armv7l-cpython-39/moleculekit/projections/metricsasa.py -> build/bdist.linux-armv7l/wheel/moleculekit/projections
2023-02-03T17:34:43,798   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-03T17:34:43,799   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-03T17:34:43,802   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-03T17:34:43,802   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile_xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-03T17:34:43,804   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xdrfile.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-03T17:34:43,807   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/include/xtc.h -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/include
2023-02-03T17:34:43,810   creating build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-03T17:34:43,811   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-03T17:34:43,815   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-03T17:34:43,817   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/src/xdrfile_xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils/src
2023-02-03T17:34:43,819   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtc.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-03T17:34:43,840   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc_utils/xtclib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/xtc_utils
2023-02-03T17:34:43,842   copying build/lib.linux-armv7l-cpython-39/moleculekit/viewer.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,844   copying build/lib.linux-armv7l-cpython-39/moleculekit/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,847   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-03T17:34:43,848   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-02-03T17:34:43,849   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/include/TMAlign.h -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/include
2023-02-03T17:34:43,852   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalignlib.pxd -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-03T17:34:43,854   creating build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-02-03T17:34:43,855   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/src/TMAlign.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign/src
2023-02-03T17:34:43,862   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-03T17:34:43,864   copying build/lib.linux-armv7l-cpython-39/moleculekit/tmalign/tmalign_util.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/tmalign
2023-02-03T17:34:43,882   creating build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-03T17:34:43,883   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.pyx -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-03T17:34:43,885   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils/occupancy_utils.cpp -> build/bdist.linux-armv7l/wheel/moleculekit/occupancy_utils
2023-02-03T17:34:43,906   creating build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,907   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/crystalpacking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,910   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,914   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/detect.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,917   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/docking.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,919   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/atomtyper.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,922   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/sequencestructuralalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,925   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/hhblitsprofile.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,927   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/graphalignment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,930   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,932   creating build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-03T17:34:43,933   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/obabel_cli.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-03T17:34:43,935   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/obabel_tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools/obabel_tools
2023-02-03T17:34:43,937   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/voxeldescriptors.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,940   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/moleculechecks.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,942   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/preparation_customres.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,945   copying build/lib.linux-armv7l-cpython-39/moleculekit/tools/autosegment.py -> build/bdist.linux-armv7l/wheel/moleculekit/tools
2023-02-03T17:34:43,947   copying build/lib.linux-armv7l-cpython-39/moleculekit/version.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,949   copying build/lib.linux-armv7l-cpython-39/moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,982   copying build/lib.linux-armv7l-cpython-39/moleculekit/writers.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,986   copying build/lib.linux-armv7l-cpython-39/moleculekit/periodictable.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,988   copying build/lib.linux-armv7l-cpython-39/moleculekit/config.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:43,990   copying build/lib.linux-armv7l-cpython-39/moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:44,013   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-02-03T17:34:44,014   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-03T17:34:44,016   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReaderTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-03T17:34:44,018   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxReadWriteTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-03T17:34:44,021   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/PdbxWriterTests.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-03T17:34:44,023   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/tests/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/tests
2023-02-03T17:34:44,025   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-03T17:34:44,026   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/PdbxWriter.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-03T17:34:44,029   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/writer/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/writer
2023-02-03T17:34:44,031   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx
2023-02-03T17:34:44,034   creating build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-03T17:34:44,035   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxReader.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-03T17:34:44,038   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxContainers.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-03T17:34:44,042   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-03T17:34:44,043   copying build/lib.linux-armv7l-cpython-39/moleculekit/pdbx/reader/PdbxParser.py -> build/bdist.linux-armv7l/wheel/moleculekit/pdbx/reader
2023-02-03T17:34:44,047   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,048   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/util.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,051   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,054   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,057   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmol.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,060   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,062   creating build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-03T17:34:44,063   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/test_tools.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-03T17:34:44,066   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/clustering.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-03T17:34:44,068   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/__init__.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-03T17:34:44,070   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/tools/restrainedembed.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol/tools
2023-02-03T17:34:44,072   copying build/lib.linux-armv7l-cpython-39/moleculekit/smallmol/test_smallmollib.py -> build/bdist.linux-armv7l/wheel/moleculekit/smallmol
2023-02-03T17:34:44,074   copying build/lib.linux-armv7l-cpython-39/moleculekit/rdkitintegration.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:44,077   copying build/lib.linux-armv7l-cpython-39/moleculekit/align.py -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:44,079   copying build/lib.linux-armv7l-cpython-39/moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:44,118   copying build/lib.linux-armv7l-cpython-39/moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/moleculekit
2023-02-03T17:34:44,146   running install_egg_info
2023-02-03T17:34:44,152   Copying moleculekit.egg-info to build/bdist.linux-armv7l/wheel/moleculekit-1.5.7-py3.9.egg-info
2023-02-03T17:34:44,166   running install_scripts
2023-02-03T17:34:44,234   creating build/bdist.linux-armv7l/wheel/moleculekit-1.5.7.dist-info/WHEEL
2023-02-03T17:34:44,237   creating '/tmp/pip-wheel-pfw0elae/.tmp-tq43ox11/moleculekit-1.5.7-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-03T17:34:44,240   adding 'moleculekit/__init__.py'
2023-02-03T17:34:44,242   adding 'moleculekit/_version.py'
2023-02-03T17:34:44,244   adding 'moleculekit/align.py'
2023-02-03T17:34:44,540   adding 'moleculekit/atomselect_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:44,551   adding 'moleculekit/bondguesser.py'
2023-02-03T17:34:44,766   adding 'moleculekit/bondguesser_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:44,774   adding 'moleculekit/config.py'
2023-02-03T17:34:44,776   adding 'moleculekit/dihedral.py'
2023-02-03T17:34:45,043   adding 'moleculekit/distance_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:45,053   adding 'moleculekit/home.py'
2023-02-03T17:34:45,055   adding 'moleculekit/logging.ini'
2023-02-03T17:34:45,068   adding 'moleculekit/molecule.py'
2023-02-03T17:34:45,269   adding 'moleculekit/occupancy_utils.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:45,278   adding 'moleculekit/opm.py'
2023-02-03T17:34:45,280   adding 'moleculekit/periodictable.py'
2023-02-03T17:34:45,282   adding 'moleculekit/pymolgraphics.py'
2023-02-03T17:34:45,283   adding 'moleculekit/rcsb.py'
2023-02-03T17:34:45,285   adding 'moleculekit/rdkitintegration.py'
2023-02-03T17:34:45,297   adding 'moleculekit/readers.py'
2023-02-03T17:34:45,881   adding 'moleculekit/tmalign.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:45,904   adding 'moleculekit/util.py'
2023-02-03T17:34:45,906   adding 'moleculekit/version.py'
2023-02-03T17:34:45,907   adding 'moleculekit/viewer.py'
2023-02-03T17:34:45,909   adding 'moleculekit/vmd_wrapper'
2023-02-03T17:34:45,911   adding 'moleculekit/vmdgraphics.py'
2023-02-03T17:34:45,913   adding 'moleculekit/vmdviewer.py'
2023-02-03T17:34:46,120   adding 'moleculekit/wrapping.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:46,131   adding 'moleculekit/writers.py'
2023-02-03T17:34:46,371   adding 'moleculekit/xtc.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:46,379   adding 'moleculekit/atomselect/__init__.py'
2023-02-03T17:34:46,381   adding 'moleculekit/atomselect/analyze.py'
2023-02-03T17:34:46,383   adding 'moleculekit/atomselect/atomselect.py'
2023-02-03T17:34:46,385   adding 'moleculekit/atomselect/languageparser.py'
2023-02-03T17:34:46,470   adding 'moleculekit/atomselect_utils/atomselect_utils.cpp'
2023-02-03T17:34:46,480   adding 'moleculekit/atomselect_utils/atomselect_utils.pyx'
2023-02-03T17:34:46,552   adding 'moleculekit/bondguesser_utils/bondguesser_utils.cpp'
2023-02-03T17:34:46,560   adding 'moleculekit/bondguesser_utils/bondguesser_utils.pyx'
2023-02-03T17:34:46,636   adding 'moleculekit/distance_utils/distance_utils.cpp'
2023-02-03T17:34:46,644   adding 'moleculekit/distance_utils/distance_utils.pyx'
2023-02-03T17:34:46,645   adding 'moleculekit/interactions/__init__.py'
2023-02-03T17:34:46,899   adding 'moleculekit/interactions/cationpi.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:47,137   adding 'moleculekit/interactions/hbonds.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:47,147   adding 'moleculekit/interactions/interactions.py'
2023-02-03T17:34:47,398   adding 'moleculekit/interactions/pipi.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:47,655   adding 'moleculekit/interactions/sigmahole.cpython-39-arm-linux-gnueabihf.so'
2023-02-03T17:34:47,736   adding 'moleculekit/interactions/cationpi/cationpi.cpp'
2023-02-03T17:34:47,744   adding 'moleculekit/interactions/cationpi/cationpi.pyx'
2023-02-03T17:34:47,816   adding 'moleculekit/interactions/hbonds/hbonds.cpp'
2023-02-03T17:34:47,823   adding 'moleculekit/interactions/hbonds/hbonds.pyx'
2023-02-03T17:34:47,896   adding 'moleculekit/interactions/pipi/pipi.cpp'
2023-02-03T17:34:47,904   adding 'moleculekit/interactions/pipi/pipi.pyx'
2023-02-03T17:34:47,976   adding 'moleculekit/interactions/sigmahole/sigmahole.cpp'
2023-02-03T17:34:47,984   adding 'moleculekit/interactions/sigmahole/sigmahole.pyx'
2023-02-03T17:34:48,052   adding 'moleculekit/occupancy_utils/occupancy_utils.cpp'
2023-02-03T17:34:48,059   adding 'moleculekit/occupancy_utils/occupancy_utils.pyx'
2023-02-03T17:34:48,061   adding 'moleculekit/pdbx/__init__.py'
2023-02-03T17:34:48,065   adding 'moleculekit/pdbx/reader/PdbxContainers.py'
2023-02-03T17:34:48,068   adding 'moleculekit/pdbx/reader/PdbxParser.py'
2023-02-03T17:34:48,070   adding 'moleculekit/pdbx/reader/PdbxReader.py'
2023-02-03T17:34:48,072   adding 'moleculekit/pdbx/reader/__init__.py'
2023-02-03T17:34:48,074   adding 'moleculekit/pdbx/tests/PdbxReadWriteTests.py'
2023-02-03T17:34:48,076   adding 'moleculekit/pdbx/tests/PdbxReaderTests.py'
2023-02-03T17:34:48,077   adding 'moleculekit/pdbx/tests/PdbxWriterTests.py'
2023-02-03T17:34:48,078   adding 'moleculekit/pdbx/tests/__init__.py'
2023-02-03T17:34:48,081   adding 'moleculekit/pdbx/writer/PdbxWriter.py'
2023-02-03T17:34:48,082   adding 'moleculekit/pdbx/writer/__init__.py'
2023-02-03T17:34:48,084   adding 'moleculekit/ply/__init__.py'
2023-02-03T17:34:48,088   adding 'moleculekit/ply/lex.py'
2023-02-03T17:34:48,100   adding 'moleculekit/ply/yacc.py'
2023-02-03T17:34:48,103   adding 'moleculekit/projections/__init__.py'
2023-02-03T17:34:48,105   adding 'moleculekit/projections/metriccoordinate.py'
2023-02-03T17:34:48,108   adding 'moleculekit/projections/metricdihedral.py'
2023-02-03T17:34:48,113   adding 'moleculekit/projections/metricdistance.py'
2023-02-03T17:34:48,115   adding 'moleculekit/projections/metricfluctuation.py'
2023-02-03T17:34:48,117   adding 'moleculekit/projections/metricgyration.py'
2023-02-03T17:34:48,121   adding 'moleculekit/projections/metricplumed2.py'
2023-02-03T17:34:48,123   adding 'moleculekit/projections/metricrmsd.py'
2023-02-03T17:34:48,125   adding 'moleculekit/projections/metricsasa.py'
2023-02-03T17:34:48,127   adding 'moleculekit/projections/metricsecondarystructure.py'
2023-02-03T17:34:48,129   adding 'moleculekit/projections/metricshell.py'
2023-02-03T17:34:48,131   adding 'moleculekit/projections/metricsphericalcoordinate.py'
2023-02-03T17:34:48,132   adding 'moleculekit/projections/metrictmscore.py'
2023-02-03T17:34:48,134   adding 'moleculekit/projections/projection.py'
2023-02-03T17:34:48,135   adding 'moleculekit/projections/util.py'
2023-02-03T17:34:48,138   adding 'moleculekit/share/ALA.cif'
2023-02-03T17:34:48,139   adding 'moleculekit/share/backbone.cif'
2023-02-03T17:34:49,463   adding 'moleculekit/share/opm_sequences.json'
2023-02-03T17:34:49,549   adding 'moleculekit/share/atomselect/atomselect.json'
2023-02-03T17:34:49,554   adding 'moleculekit/share/pdb2pqr/residues/.gitkeep'
2023-02-03T17:34:49,555   adding 'moleculekit/share/pdb2pqr/residues/004.dat'
2023-02-03T17:34:49,557   adding 'moleculekit/share/pdb2pqr/residues/004.xml'
2023-02-03T17:34:49,558   adding 'moleculekit/share/pdb2pqr/residues/03Y.dat'
2023-02-03T17:34:49,559   adding 'moleculekit/share/pdb2pqr/residues/03Y.xml'
2023-02-03T17:34:49,561   adding 'moleculekit/share/pdb2pqr/residues/0A1.dat'
2023-02-03T17:34:49,562   adding 'moleculekit/share/pdb2pqr/residues/0A1.xml'
2023-02-03T17:34:49,563   adding 'moleculekit/share/pdb2pqr/residues/0AF.dat'
2023-02-03T17:34:49,565   adding 'moleculekit/share/pdb2pqr/residues/0AF.xml'
2023-02-03T17:34:49,566   adding 'moleculekit/share/pdb2pqr/residues/0BN.dat'
2023-02-03T17:34:49,567   adding 'moleculekit/share/pdb2pqr/residues/0BN.xml'
2023-02-03T17:34:49,569   adding 'moleculekit/share/pdb2pqr/residues/1MH.dat'
2023-02-03T17:34:49,570   adding 'moleculekit/share/pdb2pqr/residues/1MH.xml'
2023-02-03T17:34:49,571   adding 'moleculekit/share/pdb2pqr/residues/2AS.dat'
2023-02-03T17:34:49,572   adding 'moleculekit/share/pdb2pqr/residues/2AS.xml'
2023-02-03T17:34:49,574   adding 'moleculekit/share/pdb2pqr/residues/2GX.dat'
2023-02-03T17:34:49,575   adding 'moleculekit/share/pdb2pqr/residues/2GX.xml'
2023-02-03T17:34:49,576   adding 'moleculekit/share/pdb2pqr/residues/2ML.dat'
2023-02-03T17:34:49,578   adding 'moleculekit/share/pdb2pqr/residues/2ML.xml'
2023-02-03T17:34:49,579   adding 'moleculekit/share/pdb2pqr/residues/2MR.dat'
2023-02-03T17:34:49,580   adding 'moleculekit/share/pdb2pqr/residues/2MR.xml'
2023-02-03T17:34:49,582   adding 'moleculekit/share/pdb2pqr/residues/4IN.dat'
2023-02-03T17:34:49,583   adding 'moleculekit/share/pdb2pqr/residues/4IN.xml'
2023-02-03T17:34:49,584   adding 'moleculekit/share/pdb2pqr/residues/4PH.dat'
2023-02-03T17:34:49,586   adding 'moleculekit/share/pdb2pqr/residues/4PH.xml'
2023-02-03T17:34:49,587   adding 'moleculekit/share/pdb2pqr/residues/4PQ.dat'
2023-02-03T17:34:49,588   adding 'moleculekit/share/pdb2pqr/residues/4PQ.xml'
2023-02-03T17:34:49,590   adding 'moleculekit/share/pdb2pqr/residues/5JP.dat'
2023-02-03T17:34:49,591   adding 'moleculekit/share/pdb2pqr/residues/5JP.xml'
2023-02-03T17:34:49,592   adding 'moleculekit/share/pdb2pqr/residues/AA4.dat'
2023-02-03T17:34:49,594   adding 'moleculekit/share/pdb2pqr/residues/AA4.xml'
2023-02-03T17:34:49,595   adding 'moleculekit/share/pdb2pqr/residues/ABA.dat'
2023-02-03T17:34:49,596   adding 'moleculekit/share/pdb2pqr/residues/ABA.xml'
2023-02-03T17:34:49,597   adding 'moleculekit/share/pdb2pqr/residues/AHP.dat'
2023-02-03T17:34:49,599   adding 'moleculekit/share/pdb2pqr/residues/AHP.xml'
2023-02-03T17:34:49,600   adding 'moleculekit/share/pdb2pqr/residues/ALC.dat'
2023-02-03T17:34:49,601   adding 'moleculekit/share/pdb2pqr/residues/ALC.xml'
2023-02-03T17:34:49,603   adding 'moleculekit/share/pdb2pqr/residues/ALN.dat'
2023-02-03T17:34:49,604   adding 'moleculekit/share/pdb2pqr/residues/ALN.xml'
2023-02-03T17:34:49,605   adding 'moleculekit/share/pdb2pqr/residues/ALY.dat'
2023-02-03T17:34:49,607   adding 'moleculekit/share/pdb2pqr/residues/ALY.xml'
2023-02-03T17:34:49,608   adding 'moleculekit/share/pdb2pqr/residues/APD.dat'
2023-02-03T17:34:49,610   adding 'moleculekit/share/pdb2pqr/residues/APD.xml'
2023-02-03T17:34:49,611   adding 'moleculekit/share/pdb2pqr/residues/BB8.dat'
2023-02-03T17:34:49,612   adding 'moleculekit/share/pdb2pqr/residues/BB8.xml'
2023-02-03T17:34:49,613   adding 'moleculekit/share/pdb2pqr/residues/BCS.dat'
2023-02-03T17:34:49,615   adding 'moleculekit/share/pdb2pqr/residues/BCS.xml'
2023-02-03T17:34:49,616   adding 'moleculekit/share/pdb2pqr/residues/BTK.dat'
2023-02-03T17:34:49,617   adding 'moleculekit/share/pdb2pqr/residues/BTK.xml'
2023-02-03T17:34:49,619   adding 'moleculekit/share/pdb2pqr/residues/CCS.dat'
2023-02-03T17:34:49,620   adding 'moleculekit/share/pdb2pqr/residues/CCS.xml'
2023-02-03T17:34:49,621   adding 'moleculekit/share/pdb2pqr/residues/CGU.dat'
2023-02-03T17:34:49,623   adding 'moleculekit/share/pdb2pqr/residues/CGU.xml'
2023-02-03T17:34:49,624   adding 'moleculekit/share/pdb2pqr/residues/CSA.dat'
2023-02-03T17:34:49,625   adding 'moleculekit/share/pdb2pqr/residues/CSA.xml'
2023-02-03T17:34:49,627   adding 'moleculekit/share/pdb2pqr/residues/CSO.dat'
2023-02-03T17:34:49,628   adding 'moleculekit/share/pdb2pqr/residues/CSO.xml'
2023-02-03T17:34:49,629   adding 'moleculekit/share/pdb2pqr/residues/CSP.dat'
2023-02-03T17:34:49,631   adding 'moleculekit/share/pdb2pqr/residues/CSP.xml'
2023-02-03T17:34:49,632   adding 'moleculekit/share/pdb2pqr/residues/CSS.dat'
2023-02-03T17:34:49,633   adding 'moleculekit/share/pdb2pqr/residues/CSS.xml'
2023-02-03T17:34:49,634   adding 'moleculekit/share/pdb2pqr/residues/D4P.dat'
2023-02-03T17:34:49,636   adding 'moleculekit/share/pdb2pqr/residues/D4P.xml'
2023-02-03T17:34:49,637   adding 'moleculekit/share/pdb2pqr/residues/DA2.dat'
2023-02-03T17:34:49,638   adding 'moleculekit/share/pdb2pqr/residues/DA2.xml'
2023-02-03T17:34:49,640   adding 'moleculekit/share/pdb2pqr/residues/DAB.dat'
2023-02-03T17:34:49,641   adding 'moleculekit/share/pdb2pqr/residues/DAB.xml'
2023-02-03T17:34:49,642   adding 'moleculekit/share/pdb2pqr/residues/DAH.dat'
2023-02-03T17:34:49,643   adding 'moleculekit/share/pdb2pqr/residues/DAH.xml'
2023-02-03T17:34:49,645   adding 'moleculekit/share/pdb2pqr/residues/DPP.dat'
2023-02-03T17:34:49,646   adding 'moleculekit/share/pdb2pqr/residues/DPP.xml'
2023-02-03T17:34:49,647   adding 'moleculekit/share/pdb2pqr/residues/ESC.dat'
2023-02-03T17:34:49,648   adding 'moleculekit/share/pdb2pqr/residues/ESC.xml'
2023-02-03T17:34:49,650   adding 'moleculekit/share/pdb2pqr/residues/FGL.dat'
2023-02-03T17:34:49,651   adding 'moleculekit/share/pdb2pqr/residues/FGL.xml'
2023-02-03T17:34:49,652   adding 'moleculekit/share/pdb2pqr/residues/GHG.dat'
2023-02-03T17:34:49,653   adding 'moleculekit/share/pdb2pqr/residues/GHG.xml'
2023-02-03T17:34:49,655   adding 'moleculekit/share/pdb2pqr/residues/GME.dat'
2023-02-03T17:34:49,656   adding 'moleculekit/share/pdb2pqr/residues/GME.xml'
2023-02-03T17:34:49,657   adding 'moleculekit/share/pdb2pqr/residues/GNC.dat'
2023-02-03T17:34:49,659   adding 'moleculekit/share/pdb2pqr/residues/GNC.xml'
2023-02-03T17:34:49,660   adding 'moleculekit/share/pdb2pqr/residues/HHK.dat'
2023-02-03T17:34:49,661   adding 'moleculekit/share/pdb2pqr/residues/HHK.xml'
2023-02-03T17:34:49,663   adding 'moleculekit/share/pdb2pqr/residues/HLU.dat'
2023-02-03T17:34:49,664   adding 'moleculekit/share/pdb2pqr/residues/HLU.xml'
2023-02-03T17:34:49,665   adding 'moleculekit/share/pdb2pqr/residues/HLX.dat'
2023-02-03T17:34:49,667   adding 'moleculekit/share/pdb2pqr/residues/HLX.xml'
2023-02-03T17:34:49,668   adding 'moleculekit/share/pdb2pqr/residues/HOX.dat'
2023-02-03T17:34:49,669   adding 'moleculekit/share/pdb2pqr/residues/HOX.xml'
2023-02-03T17:34:49,671   adding 'moleculekit/share/pdb2pqr/residues/HPE.dat'
2023-02-03T17:34:49,672   adding 'moleculekit/share/pdb2pqr/residues/HPE.xml'
2023-02-03T17:34:49,673   adding 'moleculekit/share/pdb2pqr/residues/HQA.dat'
2023-02-03T17:34:49,674   adding 'moleculekit/share/pdb2pqr/residues/HQA.xml'
2023-02-03T17:34:49,676   adding 'moleculekit/share/pdb2pqr/residues/HTR.dat'
2023-02-03T17:34:49,677   adding 'moleculekit/share/pdb2pqr/residues/HTR.xml'
2023-02-03T17:34:49,678   adding 'moleculekit/share/pdb2pqr/residues/HYP.dat'
2023-02-03T17:34:49,680   adding 'moleculekit/share/pdb2pqr/residues/HYP.xml'
2023-02-03T17:34:49,681   adding 'moleculekit/share/pdb2pqr/residues/I2M.dat'
2023-02-03T17:34:49,682   adding 'moleculekit/share/pdb2pqr/residues/I2M.xml'
2023-02-03T17:34:49,683   adding 'moleculekit/share/pdb2pqr/residues/IGL.dat'
2023-02-03T17:34:49,685   adding 'moleculekit/share/pdb2pqr/residues/IGL.xml'
2023-02-03T17:34:49,686   adding 'moleculekit/share/pdb2pqr/residues/IIL.dat'
2023-02-03T17:34:49,687   adding 'moleculekit/share/pdb2pqr/residues/IIL.xml'
2023-02-03T17:34:49,689   adding 'moleculekit/share/pdb2pqr/residues/IML.dat'
2023-02-03T17:34:49,690   adding 'moleculekit/share/pdb2pqr/residues/IML.xml'
2023-02-03T17:34:49,691   adding 'moleculekit/share/pdb2pqr/residues/KYN.dat'
2023-02-03T17:34:49,693   adding 'moleculekit/share/pdb2pqr/residues/KYN.xml'
2023-02-03T17:34:49,694   adding 'moleculekit/share/pdb2pqr/residues/LME.dat'
2023-02-03T17:34:49,695   adding 'moleculekit/share/pdb2pqr/residues/LME.xml'
2023-02-03T17:34:49,696   adding 'moleculekit/share/pdb2pqr/residues/LMQ.dat'
2023-02-03T17:34:49,698   adding 'moleculekit/share/pdb2pqr/residues/LMQ.xml'
2023-02-03T17:34:49,699   adding 'moleculekit/share/pdb2pqr/residues/LYZ.dat'
2023-02-03T17:34:49,700   adding 'moleculekit/share/pdb2pqr/residues/LYZ.xml'
2023-02-03T17:34:49,702   adding 'moleculekit/share/pdb2pqr/residues/M3L.dat'
2023-02-03T17:34:49,703   adding 'moleculekit/share/pdb2pqr/residues/M3L.xml'
2023-02-03T17:34:49,704   adding 'moleculekit/share/pdb2pqr/residues/ME0.dat'
2023-02-03T17:34:49,706   adding 'moleculekit/share/pdb2pqr/residues/ME0.xml'
2023-02-03T17:34:49,707   adding 'moleculekit/share/pdb2pqr/residues/MEA.dat'
2023-02-03T17:34:49,708   adding 'moleculekit/share/pdb2pqr/residues/MEA.xml'
2023-02-03T17:34:49,710   adding 'moleculekit/share/pdb2pqr/residues/MEN.dat'
2023-02-03T17:34:49,711   adding 'moleculekit/share/pdb2pqr/residues/MEN.xml'
2023-02-03T17:34:49,712   adding 'moleculekit/share/pdb2pqr/residues/MEQ.dat'
2023-02-03T17:34:49,713   adding 'moleculekit/share/pdb2pqr/residues/MEQ.xml'
2023-02-03T17:34:49,715   adding 'moleculekit/share/pdb2pqr/residues/MLE.dat'
2023-02-03T17:34:49,716   adding 'moleculekit/share/pdb2pqr/residues/MLE.xml'
2023-02-03T17:34:49,717   adding 'moleculekit/share/pdb2pqr/residues/MLY.dat'
2023-02-03T17:34:49,719   adding 'moleculekit/share/pdb2pqr/residues/MLY.xml'
2023-02-03T17:34:49,720   adding 'moleculekit/share/pdb2pqr/residues/MLZ.dat'
2023-02-03T17:34:49,721   adding 'moleculekit/share/pdb2pqr/residues/MLZ.xml'
2023-02-03T17:34:49,723   adding 'moleculekit/share/pdb2pqr/residues/MME.dat'
2023-02-03T17:34:49,724   adding 'moleculekit/share/pdb2pqr/residues/MME.xml'
2023-02-03T17:34:49,725   adding 'moleculekit/share/pdb2pqr/residues/MMO.dat'
2023-02-03T17:34:49,727   adding 'moleculekit/share/pdb2pqr/residues/MMO.xml'
2023-02-03T17:34:49,728   adding 'moleculekit/share/pdb2pqr/residues/MVA.dat'
2023-02-03T17:34:49,729   adding 'moleculekit/share/pdb2pqr/residues/MVA.xml'
2023-02-03T17:34:49,731   adding 'moleculekit/share/pdb2pqr/residues/NAL.dat'
2023-02-03T17:34:49,732   adding 'moleculekit/share/pdb2pqr/residues/NAL.xml'
2023-02-03T17:34:49,733   adding 'moleculekit/share/pdb2pqr/residues/NCY.dat'
2023-02-03T17:34:49,734   adding 'moleculekit/share/pdb2pqr/residues/NCY.xml'
2023-02-03T17:34:49,736   adding 'moleculekit/share/pdb2pqr/residues/NLE.dat'
2023-02-03T17:34:49,737   adding 'moleculekit/share/pdb2pqr/residues/NLE.xml'
2023-02-03T17:34:49,738   adding 'moleculekit/share/pdb2pqr/residues/NVA.dat'
2023-02-03T17:34:49,740   adding 'moleculekit/share/pdb2pqr/residues/NVA.xml'
2023-02-03T17:34:49,741   adding 'moleculekit/share/pdb2pqr/residues/NZC.dat'
2023-02-03T17:34:49,742   adding 'moleculekit/share/pdb2pqr/residues/NZC.xml'
2023-02-03T17:34:49,744   adding 'moleculekit/share/pdb2pqr/residues/OCY.dat'
2023-02-03T17:34:49,745   adding 'moleculekit/share/pdb2pqr/residues/OCY.xml'
2023-02-03T17:34:49,746   adding 'moleculekit/share/pdb2pqr/residues/OMX.dat'
2023-02-03T17:34:49,747   adding 'moleculekit/share/pdb2pqr/residues/OMX.xml'
2023-02-03T17:34:49,749   adding 'moleculekit/share/pdb2pqr/residues/ONL.dat'
2023-02-03T17:34:49,750   adding 'moleculekit/share/pdb2pqr/residues/ONL.xml'
2023-02-03T17:34:49,751   adding 'moleculekit/share/pdb2pqr/residues/ORM.dat'
2023-02-03T17:34:49,753   adding 'moleculekit/share/pdb2pqr/residues/ORM.xml'
2023-02-03T17:34:49,754   adding 'moleculekit/share/pdb2pqr/residues/P1L.dat'
2023-02-03T17:34:49,755   adding 'moleculekit/share/pdb2pqr/residues/P1L.xml'
2023-02-03T17:34:49,757   adding 'moleculekit/share/pdb2pqr/residues/PCA.dat'
2023-02-03T17:34:49,758   adding 'moleculekit/share/pdb2pqr/residues/PCA.xml'
2023-02-03T17:34:49,759   adding 'moleculekit/share/pdb2pqr/residues/PRK.dat'
2023-02-03T17:34:49,761   adding 'moleculekit/share/pdb2pqr/residues/PRK.xml'
2023-02-03T17:34:49,762   adding 'moleculekit/share/pdb2pqr/residues/PTR.dat'
2023-02-03T17:34:49,763   adding 'moleculekit/share/pdb2pqr/residues/PTR.xml'
2023-02-03T17:34:49,764   adding 'moleculekit/share/pdb2pqr/residues/SEP.dat'
2023-02-03T17:34:49,766   adding 'moleculekit/share/pdb2pqr/residues/SEP.xml'
2023-02-03T17:34:49,767   adding 'moleculekit/share/pdb2pqr/residues/TPO.dat'
2023-02-03T17:34:49,768   adding 'moleculekit/share/pdb2pqr/residues/TPO.xml'
2023-02-03T17:34:49,769   adding 'moleculekit/share/pdb2pqr/residues/TRO.dat'
2023-02-03T17:34:49,771   adding 'moleculekit/share/pdb2pqr/residues/TRO.xml'
2023-02-03T17:34:49,772   adding 'moleculekit/share/pdb2pqr/residues/TY2.dat'
2023-02-03T17:34:49,773   adding 'moleculekit/share/pdb2pqr/residues/TY2.xml'
2023-02-03T17:34:49,775   adding 'moleculekit/share/pdb2pqr/residues/TYQ.dat'
2023-02-03T17:34:49,776   adding 'moleculekit/share/pdb2pqr/residues/TYQ.xml'
2023-02-03T17:34:49,777   adding 'moleculekit/share/pdb2pqr/residues/YCM.dat'
2023-02-03T17:34:49,779   adding 'moleculekit/share/pdb2pqr/residues/YCM.xml'
2023-02-03T17:34:49,780   adding 'moleculekit/share/pdb2pqr/residues/YNM.dat'
2023-02-03T17:34:49,781   adding 'moleculekit/share/pdb2pqr/residues/YNM.xml'
2023-02-03T17:34:49,783   adding 'moleculekit/smallmol/__init__.py'
2023-02-03T17:34:49,788   adding 'moleculekit/smallmol/smallmol.py'
2023-02-03T17:34:49,791   adding 'moleculekit/smallmol/smallmollib.py'
2023-02-03T17:34:49,793   adding 'moleculekit/smallmol/test_smallmol.py'
2023-02-03T17:34:49,795   adding 'moleculekit/smallmol/test_smallmollib.py'
2023-02-03T17:34:49,797   adding 'moleculekit/smallmol/util.py'
2023-02-03T17:34:49,799   adding 'moleculekit/smallmol/tools/__init__.py'
2023-02-03T17:34:49,801   adding 'moleculekit/smallmol/tools/clustering.py'
2023-02-03T17:34:49,802   adding 'moleculekit/smallmol/tools/restrainedembed.py'
2023-02-03T17:34:49,804   adding 'moleculekit/smallmol/tools/test_tools.py'
2023-02-03T17:34:49,874   adding 'moleculekit/tmalign/tmalign_util.cpp'
2023-02-03T17:34:49,882   adding 'moleculekit/tmalign/tmalign_util.pyx'
2023-02-03T17:34:49,883   adding 'moleculekit/tmalign/tmalignlib.pxd'
2023-02-03T17:34:49,885   adding 'moleculekit/tmalign/include/TMAlign.h'
2023-02-03T17:34:49,903   adding 'moleculekit/tmalign/src/TMAlign.cpp'
2023-02-03T17:34:49,907   adding 'moleculekit/tools/__init__.py'
2023-02-03T17:34:49,909   adding 'moleculekit/tools/atomtyper.py'
2023-02-03T17:34:49,912   adding 'moleculekit/tools/autosegment.py'
2023-02-03T17:34:49,914   adding 'moleculekit/tools/crystalpacking.py'
2023-02-03T17:34:49,916   adding 'moleculekit/tools/detect.py'
2023-02-03T17:34:49,918   adding 'moleculekit/tools/docking.py'
2023-02-03T17:34:49,921   adding 'moleculekit/tools/graphalignment.py'
2023-02-03T17:34:49,922   adding 'moleculekit/tools/hhblitsprofile.py'
2023-02-03T17:34:49,924   adding 'moleculekit/tools/moleculechecks.py'
2023-02-03T17:34:49,931   adding 'moleculekit/tools/preparation.py'
2023-02-03T17:34:49,934   adding 'moleculekit/tools/preparation_customres.py'
2023-02-03T17:34:49,936   adding 'moleculekit/tools/sequencestructuralalignment.py'
2023-02-03T17:34:49,939   adding 'moleculekit/tools/voxeldescriptors.py'
2023-02-03T17:34:49,941   adding 'moleculekit/tools/obabel_tools/__init__.py'
2023-02-03T17:34:49,943   adding 'moleculekit/tools/obabel_tools/obabel_cli.py'
2023-02-03T17:34:50,012   adding 'moleculekit/wrapping/wrapping.cpp'
2023-02-03T17:34:50,019   adding 'moleculekit/wrapping/wrapping.pyx'
2023-02-03T17:34:50,090   adding 'moleculekit/xtc_utils/xtc.cpp'
2023-02-03T17:34:50,097   adding 'moleculekit/xtc_utils/xtc.pyx'
2023-02-03T17:34:50,099   adding 'moleculekit/xtc_utils/xtclib.pxd'
2023-02-03T17:34:50,102   adding 'moleculekit/xtc_utils/include/xdrfile.h'
2023-02-03T17:34:50,104   adding 'moleculekit/xtc_utils/include/xdrfile_xtc.h'
2023-02-03T17:34:50,105   adding 'moleculekit/xtc_utils/include/xtc.h'
2023-02-03T17:34:50,113   adding 'moleculekit/xtc_utils/src/xdrfile.cpp'
2023-02-03T17:34:50,115   adding 'moleculekit/xtc_utils/src/xdrfile_xtc.cpp'
2023-02-03T17:34:50,117   adding 'moleculekit/xtc_utils/src/xtc.cpp'
2023-02-03T17:34:50,119   adding 'moleculekit-1.5.7.dist-info/LICENSE'
2023-02-03T17:34:50,121   adding 'moleculekit-1.5.7.dist-info/METADATA'
2023-02-03T17:34:50,122   adding 'moleculekit-1.5.7.dist-info/WHEEL'
2023-02-03T17:34:50,123   adding 'moleculekit-1.5.7.dist-info/top_level.txt'
2023-02-03T17:34:50,128   adding 'moleculekit-1.5.7.dist-info/RECORD'
2023-02-03T17:34:50,317   removing build/bdist.linux-armv7l/wheel
2023-02-03T17:34:50,616   Building wheel for moleculekit (pyproject.toml): finished with status 'done'
2023-02-03T17:34:50,893   Created wheel for moleculekit: filename=moleculekit-1.5.7-cp39-cp39-linux_armv7l.whl size=11483476 sha256=784b935ce724662b865807e16e6006c53548f55ba4e2832c419943d22a22a63b
2023-02-03T17:34:50,894   Stored in directory: /tmp/pip-ephem-wheel-cache-r23ve2xh/wheels/71/de/2d/aae7ef448a7b91848ef5e8e36be979e7e6a2b988a091038e53
2023-02-03T17:34:50,923 Successfully built moleculekit
2023-02-03T17:34:51,267 Removed build tracker: '/tmp/pip-build-tracker-_zr1cfud'