2023-02-05T04:57:35,017 Created temporary directory: /tmp/pip-ephem-wheel-cache-7mkft2iz 2023-02-05T04:57:35,019 Created temporary directory: /tmp/pip-build-tracker-2z0_606s 2023-02-05T04:57:35,019 Initialized build tracking at /tmp/pip-build-tracker-2z0_606s 2023-02-05T04:57:35,019 Created build tracker: /tmp/pip-build-tracker-2z0_606s 2023-02-05T04:57:35,019 Entered build tracker: /tmp/pip-build-tracker-2z0_606s 2023-02-05T04:57:35,020 Created temporary directory: /tmp/pip-wheel-oufo0fxe 2023-02-05T04:57:35,023 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-05T04:57:35,025 Created temporary directory: /tmp/pip-ephem-wheel-cache-a1i6s8pz 2023-02-05T04:57:35,052 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-05T04:57:35,055 2 location(s) to search for versions of glycopeptidepy: 2023-02-05T04:57:35,055 * https://pypi.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,055 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,056 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,056 Getting page https://pypi.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,058 Found index url https://pypi.org/simple 2023-02-05T04:57:35,112 Fetched page https://pypi.org/simple/glycopeptidepy/ as application/vnd.pypi.simple.v1+json 2023-02-05T04:57:35,136 Skipping link: unsupported archive format: .egg: 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https://www.piwheels.org/simple/glycopeptidepy/glycopeptidepy-0.0.9-cp37-cp37m-linux_armv6l.whl#sha256=6ae840262993fd30d3cc9886ab9c084101c73d2fe5ff93f6790e38e23c8c45e8 (from https://www.piwheels.org/simple/glycopeptidepy/) 2023-02-05T04:57:35,380 Skipping link: not a file: https://www.piwheels.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,380 Skipping link: not a file: https://pypi.org/simple/glycopeptidepy/ 2023-02-05T04:57:35,400 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-02-05T04:57:35,417 Collecting glycopeptidepy==0.0.22 2023-02-05T04:57:35,419 Created temporary directory: /tmp/pip-unpack-2578wytr 2023-02-05T04:57:35,465 Downloading glycopeptidepy-0.0.22.tar.gz (1.4 MB) 2023-02-05T04:57:36,372 Added glycopeptidepy==0.0.22 from https://files.pythonhosted.org/packages/44/2e/d0285cf3423f12619dcf8aafe32280a08b2ff1ce9debe15a5a27b030e2d4/glycopeptidepy-0.0.22.tar.gz to build tracker '/tmp/pip-build-tracker-2z0_606s' 2023-02-05T04:57:36,377 Created temporary directory: /tmp/pip-build-env-62rkwmoh 2023-02-05T04:57:36,385 Installing build dependencies: started 2023-02-05T04:57:36,386 Running command pip subprocess to install build dependencies 2023-02-05T04:57:37,636 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-02-05T04:57:38,053 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-05T04:57:38,079 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-05T04:57:39,708 Collecting setuptools 2023-02-05T04:57:39,845 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.1.0-py3-none-any.whl (1.1 MB) 2023-02-05T04:57:40,128 Collecting wheel 2023-02-05T04:57:40,146 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-05T04:57:41,576 Collecting Cython 2023-02-05T04:57:42,102 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-02-05T04:57:42,529 Collecting glypy 2023-02-05T04:57:42,746 Using cached https://www.piwheels.org/simple/glypy/glypy-1.0.7-cp39-cp39-linux_armv7l.whl (1.5 MB) 2023-02-05T04:57:42,957 Collecting six 2023-02-05T04:57:42,975 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-02-05T04:57:43,217 Collecting hjson 2023-02-05T04:57:43,262 Using cached https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-02-05T04:57:45,222 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-02-05T04:57:45,480 Creating /tmp/pip-build-env-62rkwmoh/overlay/bin 2023-02-05T04:57:45,482 changing mode of /tmp/pip-build-env-62rkwmoh/overlay/bin/hjson to 755 2023-02-05T04:57:45,645 changing mode of /tmp/pip-build-env-62rkwmoh/overlay/bin/wheel to 755 2023-02-05T04:57:51,190 changing mode of /tmp/pip-build-env-62rkwmoh/overlay/bin/cygdb to 755 2023-02-05T04:57:51,193 changing mode of /tmp/pip-build-env-62rkwmoh/overlay/bin/cython to 755 2023-02-05T04:57:51,195 changing mode of /tmp/pip-build-env-62rkwmoh/overlay/bin/cythonize to 755 2023-02-05T04:57:52,594 Successfully installed Cython-0.29.33 glypy-1.0.7 hjson-3.1.0 setuptools-67.1.0 six-1.16.0 wheel-0.38.4 2023-02-05T04:57:52,610 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-05T04:57:52,610 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-05T04:57:52,943 Installing build dependencies: finished with status 'done' 2023-02-05T04:57:52,958 Getting requirements to build wheel: started 2023-02-05T04:57:52,959 Running command Getting requirements to build wheel 2023-02-05T04:57:55,367 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/base.pxd 2023-02-05T04:57:55,367 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:57:56,516 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/fragment.pxd 2023-02-05T04:57:56,516 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:57:58,987 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-02-05T04:57:58,988 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:00,184 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-02-05T04:58:00,185 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:02,698 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-02-05T04:58:02,699 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:07,317 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/glycan.pxd 2023-02-05T04:58:07,318 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:08,636 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/modification/rule.pxd 2023-02-05T04:58:08,636 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:09,680 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-02-05T04:58:09,680 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:11,534 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/algorithm.pyx 2023-02-05T04:58:11,534 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:12,401 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/collectiontools.pxd 2023-02-05T04:58:12,401 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:13,394 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/count_table.pxd 2023-02-05T04:58:13,394 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:15,381 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/parser.pxd 2023-02-05T04:58:15,381 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:16,618 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-02-05T04:58:16,859 /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3/src/glycopeptidepy/_c/structure/modification/source.pxd 2023-02-05T04:58:16,859 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T04:58:17,323 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/count_table.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/parser.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,324 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T04:58:17,325 Compiling src/glycopeptidepy/_c/algorithm.pyx because it depends on /tmp/pip-build-env-62rkwmoh/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T04:58:17,325 [ 1/13] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2023-02-05T04:58:17,326 [ 2/13] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2023-02-05T04:58:17,326 [ 3/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-02-05T04:58:17,326 [ 4/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-02-05T04:58:17,326 [ 5/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-02-05T04:58:17,326 [ 6/13] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2023-02-05T04:58:17,326 [ 7/13] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2023-02-05T04:58:17,326 [ 8/13] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2023-02-05T04:58:17,327 [ 9/13] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2023-02-05T04:58:17,327 [10/13] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2023-02-05T04:58:17,327 [11/13] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2023-02-05T04:58:17,327 [12/13] Cythonizing src/glycopeptidepy/_c/parser.pyx 2023-02-05T04:58:17,327 [13/13] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2023-02-05T04:58:17,409 running egg_info 2023-02-05T04:58:17,416 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T04:58:17,418 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T04:58:17,420 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-02-05T04:58:17,421 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-02-05T04:58:17,465 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:17,470 reading manifest template 'MANIFEST.in' 2023-02-05T04:58:17,665 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:18,169 Getting requirements to build wheel: finished with status 'done' 2023-02-05T04:58:18,180 Created temporary directory: /tmp/pip-modern-metadata-jqc4z5mz 2023-02-05T04:58:18,183 Preparing metadata (pyproject.toml): started 2023-02-05T04:58:18,184 Running command Preparing metadata (pyproject.toml) 2023-02-05T04:58:19,960 running dist_info 2023-02-05T04:58:19,981 creating /tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info 2023-02-05T04:58:19,987 writing /tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T04:58:19,990 writing dependency_links to /tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T04:58:19,992 writing requirements to /tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/requires.txt 2023-02-05T04:58:19,993 writing top-level names to /tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/top_level.txt 2023-02-05T04:58:19,994 writing manifest file '/tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:20,025 reading manifest file '/tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:20,027 reading manifest template 'MANIFEST.in' 2023-02-05T04:58:20,226 writing manifest file '/tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:20,228 creating '/tmp/pip-modern-metadata-jqc4z5mz/glycopeptidepy-0.0.22.dist-info' 2023-02-05T04:58:20,434 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-05T04:58:20,441 Source in /tmp/pip-wheel-oufo0fxe/glycopeptidepy_c7fa71333aeb41ee84d9005022549ac3 has version 0.0.22, which satisfies requirement glycopeptidepy==0.0.22 from https://files.pythonhosted.org/packages/44/2e/d0285cf3423f12619dcf8aafe32280a08b2ff1ce9debe15a5a27b030e2d4/glycopeptidepy-0.0.22.tar.gz 2023-02-05T04:58:20,442 Removed glycopeptidepy==0.0.22 from https://files.pythonhosted.org/packages/44/2e/d0285cf3423f12619dcf8aafe32280a08b2ff1ce9debe15a5a27b030e2d4/glycopeptidepy-0.0.22.tar.gz from build tracker '/tmp/pip-build-tracker-2z0_606s' 2023-02-05T04:58:20,446 Created temporary directory: /tmp/pip-unpack-8vtc0f4_ 2023-02-05T04:58:20,447 Building wheels for collected packages: glycopeptidepy 2023-02-05T04:58:20,452 Created temporary directory: /tmp/pip-wheel-p6jf5hig 2023-02-05T04:58:20,452 Destination directory: /tmp/pip-wheel-p6jf5hig 2023-02-05T04:58:20,455 Building wheel for glycopeptidepy (pyproject.toml): started 2023-02-05T04:58:20,456 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-02-05T04:58:22,132 running bdist_wheel 2023-02-05T04:58:22,150 running build 2023-02-05T04:58:22,150 running build_py 2023-02-05T04:58:22,159 creating build 2023-02-05T04:58:22,160 creating build/lib.linux-armv7l-cpython-39 2023-02-05T04:58:22,161 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T04:58:22,162 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T04:58:22,165 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T04:58:22,167 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T04:58:22,170 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T04:58:22,172 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,173 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,175 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,177 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,178 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,181 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,183 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,185 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,187 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,189 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T04:58:22,192 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,193 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,196 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,198 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,200 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,202 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,205 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,207 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,209 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,211 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,213 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T04:58:22,216 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T04:58:22,217 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T04:58:22,220 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T04:58:22,223 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,224 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,226 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,229 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,231 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,233 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,235 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,237 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T04:58:22,242 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,242 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,245 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,246 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,248 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,249 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,251 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T04:58:22,253 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T04:58:22,256 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T04:58:22,258 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T04:58:22,261 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T04:58:22,264 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,265 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,267 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,270 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,272 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,275 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,277 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,279 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,282 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T04:58:22,285 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,286 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,289 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,292 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,293 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,296 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T04:58:22,299 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:22,300 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:22,304 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:22,305 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:22,308 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T04:58:22,309 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T04:58:22,311 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T04:58:22,313 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T04:58:22,316 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T04:58:22,318 running egg_info 2023-02-05T04:58:22,339 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T04:58:22,340 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T04:58:22,342 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-02-05T04:58:22,343 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-02-05T04:58:22,360 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:22,365 reading manifest template 'MANIFEST.in' 2023-02-05T04:58:22,567 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T04:58:22,576 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,590 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,593 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,602 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,604 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,606 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,608 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,610 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,630 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,632 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,635 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,649 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,651 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T04:58:22,654 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,676 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,678 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,681 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,688 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,691 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,693 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,723 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,725 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,729 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,750 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,752 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,755 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,776 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,779 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T04:58:22,782 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,793 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,796 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,799 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,831 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,833 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,837 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,877 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,879 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:58:22,882 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,892 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,894 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,896 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,911 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,913 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,916 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,927 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,929 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,931 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T04:58:22,933 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:22,936 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T04:58:23,001 running build_ext 2023-02-05T04:58:23,006 building 'glycopeptidepy._c.collectiontools' extension 2023-02-05T04:58:23,007 creating build/temp.linux-armv7l-cpython-39 2023-02-05T04:58:23,007 creating build/temp.linux-armv7l-cpython-39/src 2023-02-05T04:58:23,008 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy 2023-02-05T04:58:23,009 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c 2023-02-05T04:58:23,010 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o 2023-02-05T04:58:27,102 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:58:27,282 building 'glycopeptidepy._c.count_table' extension 2023-02-05T04:58:27,283 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o 2023-02-05T04:58:28,256 src/glycopeptidepy/_c/count_table.c:2444:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-02-05T04:58:28,256 2444 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-02-05T04:58:28,256 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T04:58:28,257 src/glycopeptidepy/_c/count_table.c:2186:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-02-05T04:58:28,257 2186 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-02-05T04:58:28,257 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T04:58:28,257 src/glycopeptidepy/_c/count_table.c:1956:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-02-05T04:58:28,258 1956 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-02-05T04:58:28,258 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T04:58:35,984 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:58:36,131 building 'glycopeptidepy._c.parser' extension 2023-02-05T04:58:36,131 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o 2023-02-05T04:58:36,480 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-02-05T04:58:36,481 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-02-05T04:58:36,481 38 | #define PyInt_Check PyLong_Check 2023-02-05T04:58:36,481 | 2023-02-05T04:58:36,483 src/glycopeptidepy/_c/parser.c:670: note: this is the location of the previous definition 2023-02-05T04:58:36,483 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-02-05T04:58:36,483 | 2023-02-05T04:58:36,484 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-02-05T04:58:36,484 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-02-05T04:58:36,484 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-02-05T04:58:36,484 | 2023-02-05T04:58:36,484 src/glycopeptidepy/_c/parser.c:671: note: this is the location of the previous definition 2023-02-05T04:58:36,484 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-02-05T04:58:36,484 | 2023-02-05T04:58:36,493 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-02-05T04:58:36,494 src/glycopeptidepy/_c/parser.c:2004:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:36,494 2004 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-02-05T04:58:36,494 | ^ 2023-02-05T04:58:36,523 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2023-02-05T04:58:36,525 src/glycopeptidepy/_c/parser.c:4494:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T04:58:36,525 4494 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2023-02-05T04:58:36,525 | ^~ 2023-02-05T04:58:36,532 src/glycopeptidepy/_c/parser.c:4921:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T04:58:36,532 4921 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2023-02-05T04:58:36,532 | ^~ 2023-02-05T04:58:36,536 src/glycopeptidepy/_c/parser.c:5127:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T04:58:36,537 5127 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2023-02-05T04:58:36,537 | ^~ 2023-02-05T04:58:36,548 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-02-05T04:58:36,550 src/glycopeptidepy/_c/parser.c:5990:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:36,551 5990 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-02-05T04:58:36,551 | ^ 2023-02-05T04:58:41,951 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:58:42,070 building 'glycopeptidepy._c.structure.base' extension 2023-02-05T04:58:42,071 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure 2023-02-05T04:58:42,072 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o 2023-02-05T04:58:54,244 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:58:54,399 building 'glycopeptidepy._c.structure.fragment' extension 2023-02-05T04:58:54,400 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o 2023-02-05T04:58:54,724 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-02-05T04:58:54,724 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-02-05T04:58:54,724 38 | #define PyInt_Check PyLong_Check 2023-02-05T04:58:54,724 | 2023-02-05T04:58:54,730 src/glycopeptidepy/_c/structure/fragment.c:670: note: this is the location of the previous definition 2023-02-05T04:58:54,731 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-02-05T04:58:54,731 | 2023-02-05T04:58:54,731 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-02-05T04:58:54,731 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-02-05T04:58:54,731 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-02-05T04:58:54,731 | 2023-02-05T04:58:54,732 src/glycopeptidepy/_c/structure/fragment.c:671: note: this is the location of the previous definition 2023-02-05T04:58:54,732 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-02-05T04:58:54,732 | 2023-02-05T04:58:54,756 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-02-05T04:58:54,757 src/glycopeptidepy/_c/structure/fragment.c:3243:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,757 3243 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-02-05T04:58:54,758 | ^ 2023-02-05T04:58:54,759 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-02-05T04:58:54,761 src/glycopeptidepy/_c/structure/fragment.c:3472:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,761 3472 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-02-05T04:58:54,761 | ^ 2023-02-05T04:58:54,867 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-02-05T04:58:54,872 src/glycopeptidepy/_c/structure/fragment.c:10375:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,872 10375 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T04:58:54,872 | ^ 2023-02-05T04:58:54,881 src/glycopeptidepy/_c/structure/fragment.c:10690:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,881 10690 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T04:58:54,882 | ^ 2023-02-05T04:58:54,888 src/glycopeptidepy/_c/structure/fragment.c:10864:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,888 10864 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T04:58:54,888 | ^ 2023-02-05T04:58:54,894 src/glycopeptidepy/_c/structure/fragment.c:11043:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T04:58:54,894 11043 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T04:58:54,894 | ^ 2023-02-05T04:59:14,711 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:14,895 building 'glycopeptidepy._c.structure.constants' extension 2023-02-05T04:59:14,896 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o 2023-02-05T04:59:18,020 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:18,135 building 'glycopeptidepy._c.structure.glycan' extension 2023-02-05T04:59:18,136 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o 2023-02-05T04:59:18,474 src/glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2023-02-05T04:59:18,475 src/glycopeptidepy/_c/structure/glycan.c:2608:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T04:59:18,475 2608 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2023-02-05T04:59:18,476 | ^~ 2023-02-05T04:59:30,260 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:30,419 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-02-05T04:59:30,420 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o 2023-02-05T04:59:30,950 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-02-05T04:59:30,956 src/glycopeptidepy/_c/structure/sequence_methods.c:11799:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-05T04:59:30,956 11799 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2023-02-05T04:59:30,956 | ^~ 2023-02-05T04:59:42,815 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:42,969 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-02-05T04:59:42,970 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification 2023-02-05T04:59:42,970 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o 2023-02-05T04:59:50,722 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:50,861 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-02-05T04:59:50,861 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o 2023-02-05T04:59:54,903 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:55,051 building 'glycopeptidepy._c.structure.modification.source' extension 2023-02-05T04:59:55,051 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o 2023-02-05T04:59:59,284 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2023-02-05T04:59:59,403 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-02-05T04:59:59,404 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T04:59:59,405 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-02-05T05:00:03,697 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:00:03,823 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-02-05T05:00:03,824 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-02-05T05:00:31,615 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:00:31,853 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-02-05T05:00:31,853 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-02-05T05:00:32,385 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-02-05T05:00:32,390 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9538:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-02-05T05:00:32,390 9538 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-02-05T05:00:32,390 | ^ 2023-02-05T05:00:32,395 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9554:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-02-05T05:00:32,395 9554 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-02-05T05:00:32,395 | ^ 2023-02-05T05:00:32,478 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-02-05T05:00:32,485 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13646:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:00:32,485 13646 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:00:32,485 | ^ 2023-02-05T05:00:32,496 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-02-05T05:00:32,504 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14270:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-02-05T05:00:32,504 14270 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-02-05T05:00:32,504 | ^ 2023-02-05T05:00:32,516 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14028:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-02-05T05:00:32,516 14028 | int __pyx_t_15; 2023-02-05T05:00:32,516 | ^~~~~~~~~~ 2023-02-05T05:00:32,547 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-02-05T05:00:32,556 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16077:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-02-05T05:00:32,556 16077 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-02-05T05:00:32,556 | ^ 2023-02-05T05:00:32,569 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15835:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-02-05T05:00:32,569 15835 | int __pyx_t_15; 2023-02-05T05:00:32,569 | ^~~~~~~~~~ 2023-02-05T05:00:32,595 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-02-05T05:00:32,604 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17329:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:00:32,604 17329 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:00:32,605 | ^ 2023-02-05T05:00:32,614 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17387:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:00:32,614 17387 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:00:32,615 | ^ 2023-02-05T05:00:32,625 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17445:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:00:32,625 17445 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:00:32,625 | ^ 2023-02-05T05:00:52,325 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:00:52,505 building 'glycopeptidepy._c.algorithm' extension 2023-02-05T05:00:52,505 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o 2023-02-05T05:01:00,841 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:01:01,000 installing to build/bdist.linux-armv7l/wheel 2023-02-05T05:01:01,000 running install 2023-02-05T05:01:01,026 running install_lib 2023-02-05T05:01:01,034 creating build/bdist.linux-armv7l 2023-02-05T05:01:01,035 creating build/bdist.linux-armv7l/wheel 2023-02-05T05:01:01,037 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:01:01,039 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,040 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,042 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,044 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,047 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,055 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,058 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,060 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,063 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,073 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,075 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,077 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,079 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,081 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,092 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,109 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,128 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,144 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,145 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,153 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,154 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,163 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,166 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,169 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,171 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,181 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,183 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,185 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,187 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,218 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,260 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,297 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,299 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:01:01,329 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,332 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,333 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,335 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,337 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,339 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,348 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,362 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,363 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,365 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,367 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,376 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,378 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,392 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,394 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,403 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:01:01,412 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,442 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,444 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,466 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,468 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,471 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,491 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,516 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,518 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,521 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,528 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,530 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,531 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,533 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,554 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,573 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,575 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,600 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,603 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:01:01,644 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,656 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,677 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:01:01,680 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:01:01,684 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,685 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,689 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,691 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,693 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,696 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,698 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:01:01,699 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:01:01,701 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:01:01,704 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:01:01,707 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,709 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:01:01,710 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:01:01,714 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:01:01,718 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:01:01,724 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:01:01,727 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,734 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,736 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,738 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,742 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,744 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,747 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,749 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,751 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,754 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,755 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,757 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,806 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,811 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,813 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:01:01,816 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:01:01,819 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,821 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,825 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,827 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,832 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,833 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,837 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,841 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,844 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,848 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:01:01,852 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,855 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,858 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,860 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,865 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:01:01,870 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:01:01,872 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:01:01,878 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:01:01,884 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,887 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,893 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,901 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,910 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:01:01,914 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:01:01,923 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:01:01,929 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:01:01,932 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:01:01,933 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,935 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,937 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,939 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:01:01,942 running install_egg_info 2023-02-05T05:01:01,955 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.22-py3.9.egg-info 2023-02-05T05:01:01,969 running install_scripts 2023-02-05T05:01:02,040 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.22.dist-info/WHEEL 2023-02-05T05:01:02,043 creating '/tmp/pip-wheel-p6jf5hig/.tmp-z1ap8j8x/glycopeptidepy-0.0.22-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-05T05:01:02,046 adding 'glycopeptidepy/__init__.py' 2023-02-05T05:01:02,049 adding 'glycopeptidepy/algorithm.py' 2023-02-05T05:01:02,051 adding 'glycopeptidepy/enzyme.py' 2023-02-05T05:01:02,052 adding 'glycopeptidepy/version.py' 2023-02-05T05:01:02,054 adding 'glycopeptidepy/_c/__init__.py' 2023-02-05T05:01:02,094 adding 'glycopeptidepy/_c/algorithm.c' 2023-02-05T05:01:02,223 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,229 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-02-05T05:01:02,255 adding 'glycopeptidepy/_c/collectiontools.c' 2023-02-05T05:01:02,316 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,319 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-02-05T05:01:02,320 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-02-05T05:01:02,321 adding 'glycopeptidepy/_c/compat.h' 2023-02-05T05:01:02,323 adding 'glycopeptidepy/_c/compat.pxd' 2023-02-05T05:01:02,372 adding 'glycopeptidepy/_c/count_table.c' 2023-02-05T05:01:02,501 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,507 adding 'glycopeptidepy/_c/count_table.pxd' 2023-02-05T05:01:02,510 adding 'glycopeptidepy/_c/count_table.pyx' 2023-02-05T05:01:02,511 adding 'glycopeptidepy/_c/cythonize.py' 2023-02-05T05:01:02,542 adding 'glycopeptidepy/_c/parser.c' 2023-02-05T05:01:02,613 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,616 adding 'glycopeptidepy/_c/parser.pxd' 2023-02-05T05:01:02,618 adding 'glycopeptidepy/_c/parser.pyx' 2023-02-05T05:01:02,620 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-02-05T05:01:02,677 adding 'glycopeptidepy/_c/structure/base.c' 2023-02-05T05:01:02,861 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,868 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-02-05T05:01:02,870 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-02-05T05:01:02,890 adding 'glycopeptidepy/_c/structure/constants.c' 2023-02-05T05:01:02,938 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:02,941 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-02-05T05:01:02,942 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-02-05T05:01:03,030 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-02-05T05:01:03,319 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:03,329 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-02-05T05:01:03,332 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-02-05T05:01:03,387 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-02-05T05:01:03,575 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:03,582 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-02-05T05:01:03,584 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-02-05T05:01:03,651 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-02-05T05:01:03,831 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:03,837 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-02-05T05:01:03,840 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-02-05T05:01:03,842 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-02-05T05:01:03,869 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-02-05T05:01:03,932 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:03,935 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-02-05T05:01:03,937 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-02-05T05:01:04,023 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-02-05T05:01:04,299 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:04,309 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-02-05T05:01:04,313 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-02-05T05:01:04,437 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-02-05T05:01:04,817 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:04,830 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-02-05T05:01:04,833 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-02-05T05:01:04,836 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-02-05T05:01:04,861 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-02-05T05:01:04,924 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:04,927 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-02-05T05:01:04,929 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-02-05T05:01:04,968 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-02-05T05:01:05,087 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:05,092 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-02-05T05:01:05,094 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-02-05T05:01:05,119 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-02-05T05:01:05,185 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:01:05,188 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-02-05T05:01:05,189 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-02-05T05:01:05,191 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-02-05T05:01:05,192 adding 'glycopeptidepy/io/__init__.py' 2023-02-05T05:01:05,194 adding 'glycopeptidepy/io/annotation.py' 2023-02-05T05:01:05,198 adding 'glycopeptidepy/io/fasta.py' 2023-02-05T05:01:05,200 adding 'glycopeptidepy/io/mzid.py' 2023-02-05T05:01:05,201 adding 'glycopeptidepy/io/nextprot.py' 2023-02-05T05:01:05,204 adding 'glycopeptidepy/io/uniprot.py' 2023-02-05T05:01:05,206 adding 'glycopeptidepy/io/utils.py' 2023-02-05T05:01:05,208 adding 'glycopeptidepy/io/cv/__init__.py' 2023-02-05T05:01:05,209 adding 'glycopeptidepy/io/cv/peff.py' 2023-02-05T05:01:05,211 adding 'glycopeptidepy/io/cv/term.py' 2023-02-05T05:01:05,212 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-02-05T05:01:05,215 adding 'glycopeptidepy/structure/__init__.py' 2023-02-05T05:01:05,216 adding 'glycopeptidepy/structure/base.py' 2023-02-05T05:01:05,217 adding 'glycopeptidepy/structure/composition.py' 2023-02-05T05:01:05,218 adding 'glycopeptidepy/structure/constants.py' 2023-02-05T05:01:05,221 adding 'glycopeptidepy/structure/fragment.py' 2023-02-05T05:01:05,223 adding 'glycopeptidepy/structure/glycan.py' 2023-02-05T05:01:05,225 adding 'glycopeptidepy/structure/parser.py' 2023-02-05T05:01:05,227 adding 'glycopeptidepy/structure/residue.py' 2023-02-05T05:01:05,229 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-02-05T05:01:05,231 adding 'glycopeptidepy/structure/terminal_group.py' 2023-02-05T05:01:05,233 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-02-05T05:01:05,234 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-02-05T05:01:05,238 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-02-05T05:01:05,241 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-02-05T05:01:05,243 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-02-05T05:01:05,245 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-02-05T05:01:05,247 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-02-05T05:01:05,249 adding 'glycopeptidepy/structure/modification/modification.py' 2023-02-05T05:01:05,252 adding 'glycopeptidepy/structure/modification/rule.py' 2023-02-05T05:01:05,255 adding 'glycopeptidepy/structure/modification/source.py' 2023-02-05T05:01:05,257 adding 'glycopeptidepy/structure/modification/target.py' 2023-02-05T05:01:05,258 adding 'glycopeptidepy/structure/modification/utils.py' 2023-02-05T05:01:05,260 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-02-05T05:01:05,261 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-02-05T05:01:05,262 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-02-05T05:01:05,330 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-02-05T05:01:05,344 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-02-05T05:01:05,346 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-02-05T05:01:05,348 adding 'glycopeptidepy/structure/sequence/base.py' 2023-02-05T05:01:05,350 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-02-05T05:01:05,352 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-02-05T05:01:05,353 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-02-05T05:01:05,355 adding 'glycopeptidepy/test/__init__.py' 2023-02-05T05:01:05,357 adding 'glycopeptidepy/test/sequence_test_suite.py' 2023-02-05T05:01:05,359 adding 'glycopeptidepy/utils/__init__.py' 2023-02-05T05:01:05,360 adding 'glycopeptidepy/utils/collectiontools.py' 2023-02-05T05:01:05,362 adding 'glycopeptidepy/utils/intervals.py' 2023-02-05T05:01:05,364 adding 'glycopeptidepy/utils/iterators.py' 2023-02-05T05:01:05,365 adding 'glycopeptidepy/utils/memoize.py' 2023-02-05T05:01:05,367 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-02-05T05:01:05,369 adding 'glycopeptidepy-0.0.22.dist-info/METADATA' 2023-02-05T05:01:05,370 adding 'glycopeptidepy-0.0.22.dist-info/WHEEL' 2023-02-05T05:01:05,371 adding 'glycopeptidepy-0.0.22.dist-info/top_level.txt' 2023-02-05T05:01:05,373 adding 'glycopeptidepy-0.0.22.dist-info/RECORD' 2023-02-05T05:01:05,459 removing build/bdist.linux-armv7l/wheel 2023-02-05T05:01:05,658 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-02-05T05:01:05,776 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.22-cp39-cp39-linux_armv7l.whl size=5393262 sha256=565917cd38ef20d058dda0b44d75e2f83b948f70478703b24f1c1685befc51d9 2023-02-05T05:01:05,777 Stored in directory: /tmp/pip-ephem-wheel-cache-a1i6s8pz/wheels/a1/e3/2f/3229920f8ba3fee94404c12826d5cea7ec8b94f615e578e5b9 2023-02-05T05:01:05,794 Successfully built glycopeptidepy 2023-02-05T05:01:05,970 Removed build tracker: '/tmp/pip-build-tracker-2z0_606s'