2023-02-05T05:03:32,478 Created temporary directory: /tmp/pip-ephem-wheel-cache-qyixcbyw 2023-02-05T05:03:32,481 Created temporary directory: /tmp/pip-build-tracker-brpkahmf 2023-02-05T05:03:32,481 Initialized build tracking at /tmp/pip-build-tracker-brpkahmf 2023-02-05T05:03:32,481 Created build tracker: /tmp/pip-build-tracker-brpkahmf 2023-02-05T05:03:32,481 Entered build tracker: /tmp/pip-build-tracker-brpkahmf 2023-02-05T05:03:32,482 Created temporary directory: /tmp/pip-wheel-oj98u56x 2023-02-05T05:03:32,485 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-05T05:03:32,487 Created temporary directory: /tmp/pip-ephem-wheel-cache-nws33oy6 2023-02-05T05:03:32,514 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-05T05:03:32,518 2 location(s) to search for versions of glycopeptidepy: 2023-02-05T05:03:32,518 * https://pypi.org/simple/glycopeptidepy/ 2023-02-05T05:03:32,518 * https://www.piwheels.org/simple/glycopeptidepy/ 2023-02-05T05:03:32,518 Fetching project page and analyzing links: https://pypi.org/simple/glycopeptidepy/ 2023-02-05T05:03:32,519 Getting page https://pypi.org/simple/glycopeptidepy/ 2023-02-05T05:03:32,520 Found index url https://pypi.org/simple 2023-02-05T05:03:32,575 Fetched page https://pypi.org/simple/glycopeptidepy/ as application/vnd.pypi.simple.v1+json 2023-02-05T05:03:32,599 Skipping link: unsupported archive format: .egg: 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https://pypi.org/simple/glycopeptidepy/ 2023-02-05T05:03:32,849 Given no hashes to check 1 links for project 'glycopeptidepy': discarding no candidates 2023-02-05T05:03:32,866 Collecting glycopeptidepy==0.0.23 2023-02-05T05:03:32,868 Created temporary directory: /tmp/pip-unpack-btbcxmir 2023-02-05T05:03:32,918 Downloading glycopeptidepy-0.0.23.tar.gz (1.4 MB) 2023-02-05T05:03:33,804 Added glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz to build tracker '/tmp/pip-build-tracker-brpkahmf' 2023-02-05T05:03:33,810 Created temporary directory: /tmp/pip-build-env-yuv3hj7z 2023-02-05T05:03:33,817 Installing build dependencies: started 2023-02-05T05:03:33,818 Running command pip subprocess to install build dependencies 2023-02-05T05:03:35,032 Using pip 22.3 from /usr/local/lib/python3.9/dist-packages/pip (python 3.9) 2023-02-05T05:03:35,417 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-05T05:03:35,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-05T05:03:37,105 Collecting setuptools 2023-02-05T05:03:37,209 Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.1.0-py3-none-any.whl (1.1 MB) 2023-02-05T05:03:37,470 Collecting wheel 2023-02-05T05:03:37,489 Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB) 2023-02-05T05:03:38,799 Collecting Cython 2023-02-05T05:03:39,297 Using cached https://www.piwheels.org/simple/cython/Cython-0.29.33-cp39-cp39-linux_armv7l.whl (5.0 MB) 2023-02-05T05:03:39,642 Collecting glypy 2023-02-05T05:03:39,814 Using cached https://www.piwheels.org/simple/glypy/glypy-1.0.7-cp39-cp39-linux_armv7l.whl (1.5 MB) 2023-02-05T05:03:40,021 Collecting six 2023-02-05T05:03:40,037 Using cached https://www.piwheels.org/simple/six/six-1.16.0-py2.py3-none-any.whl (11 kB) 2023-02-05T05:03:40,120 Collecting hjson 2023-02-05T05:03:40,139 Using cached https://www.piwheels.org/simple/hjson/hjson-3.1.0-py3-none-any.whl (54 kB) 2023-02-05T05:03:42,076 Installing collected packages: hjson, wheel, six, setuptools, Cython, glypy 2023-02-05T05:03:42,332 Creating /tmp/pip-build-env-yuv3hj7z/overlay/bin 2023-02-05T05:03:42,335 changing mode of /tmp/pip-build-env-yuv3hj7z/overlay/bin/hjson to 755 2023-02-05T05:03:42,487 changing mode of /tmp/pip-build-env-yuv3hj7z/overlay/bin/wheel to 755 2023-02-05T05:03:47,771 changing mode of /tmp/pip-build-env-yuv3hj7z/overlay/bin/cygdb to 755 2023-02-05T05:03:47,773 changing mode of /tmp/pip-build-env-yuv3hj7z/overlay/bin/cython to 755 2023-02-05T05:03:47,775 changing mode of /tmp/pip-build-env-yuv3hj7z/overlay/bin/cythonize to 755 2023-02-05T05:03:49,103 Successfully installed Cython-0.29.33 glypy-1.0.7 hjson-3.1.0 setuptools-67.1.0 six-1.16.0 wheel-0.38.4 2023-02-05T05:03:49,118 [notice] A new release of pip available: 22.3 -> 23.0 2023-02-05T05:03:49,119 [notice] To update, run: python3 -m pip install --upgrade pip 2023-02-05T05:03:49,447 Installing build dependencies: finished with status 'done' 2023-02-05T05:03:49,462 Getting requirements to build wheel: started 2023-02-05T05:03:49,463 Running command Getting requirements to build wheel 2023-02-05T05:03:51,561 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/base.pxd 2023-02-05T05:03:51,562 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:03:52,702 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/fragment.pxd 2023-02-05T05:03:52,703 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:03:55,176 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd 2023-02-05T05:03:55,176 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:03:56,375 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd 2023-02-05T05:03:56,375 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:03:58,902 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd 2023-02-05T05:03:58,903 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:03,528 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/glycan.pxd 2023-02-05T05:04:03,529 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:04,853 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/modification/rule.pxd 2023-02-05T05:04:04,853 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:05,415 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/sequence_methods.pxd 2023-02-05T05:04:05,415 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:07,259 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/algorithm.pyx 2023-02-05T05:04:07,259 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:08,129 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/collectiontools.pxd 2023-02-05T05:04:08,130 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:09,124 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/count_table.pxd 2023-02-05T05:04:09,124 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:11,121 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/parser.pxd 2023-02-05T05:04:11,121 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:12,340 warning: src/glycopeptidepy/_c/parser.pyx:224:23: Unreachable code 2023-02-05T05:04:12,588 /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09/src/glycopeptidepy/_c/structure/modification/source.pxd 2023-02-05T05:04:12,588 tree = Parsing.p_module(s, pxd, full_module_name) 2023-02-05T05:04:13,057 Compiling src/glycopeptidepy/_c/collectiontools.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T05:04:13,057 Compiling src/glycopeptidepy/_c/count_table.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/parser.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/base.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/fragment.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/glycan.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/sequence_methods.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/modification/rule.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/utils/cenum.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/modification/source.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T05:04:13,058 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,059 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,059 Compiling src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/glypy/composition/ccomposition.pxd. 2023-02-05T05:04:13,059 Compiling src/glycopeptidepy/_c/algorithm.pyx because it depends on /tmp/pip-build-env-yuv3hj7z/overlay/lib/python3.9/site-packages/Cython/Includes/libc/string.pxd. 2023-02-05T05:04:13,059 [ 1/13] Cythonizing src/glycopeptidepy/_c/structure/base.pyx 2023-02-05T05:04:13,059 [ 2/13] Cythonizing src/glycopeptidepy/_c/structure/fragment.pyx 2023-02-05T05:04:13,059 [ 3/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx 2023-02-05T05:04:13,059 [ 4/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx 2023-02-05T05:04:13,059 [ 5/13] Cythonizing src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx 2023-02-05T05:04:13,060 [ 6/13] Cythonizing src/glycopeptidepy/_c/structure/glycan.pyx 2023-02-05T05:04:13,060 [ 7/13] Cythonizing src/glycopeptidepy/_c/structure/modification/rule.pyx 2023-02-05T05:04:13,060 [ 8/13] Cythonizing src/glycopeptidepy/_c/structure/sequence_methods.pyx 2023-02-05T05:04:13,060 [ 9/13] Cythonizing src/glycopeptidepy/_c/algorithm.pyx 2023-02-05T05:04:13,060 [10/13] Cythonizing src/glycopeptidepy/_c/collectiontools.pyx 2023-02-05T05:04:13,060 [11/13] Cythonizing src/glycopeptidepy/_c/count_table.pyx 2023-02-05T05:04:13,060 [12/13] Cythonizing src/glycopeptidepy/_c/parser.pyx 2023-02-05T05:04:13,060 [13/13] Cythonizing src/glycopeptidepy/_c/structure/modification/source.pyx 2023-02-05T05:04:13,152 running egg_info 2023-02-05T05:04:13,159 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T05:04:13,161 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T05:04:13,164 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-02-05T05:04:13,166 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-02-05T05:04:13,210 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:13,216 reading manifest template 'MANIFEST.in' 2023-02-05T05:04:13,406 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:13,908 Getting requirements to build wheel: finished with status 'done' 2023-02-05T05:04:13,920 Created temporary directory: /tmp/pip-modern-metadata-6eivljux 2023-02-05T05:04:13,923 Preparing metadata (pyproject.toml): started 2023-02-05T05:04:13,924 Running command Preparing metadata (pyproject.toml) 2023-02-05T05:04:15,804 running dist_info 2023-02-05T05:04:15,825 creating /tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info 2023-02-05T05:04:15,830 writing /tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T05:04:15,833 writing dependency_links to /tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T05:04:15,835 writing requirements to /tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/requires.txt 2023-02-05T05:04:15,836 writing top-level names to /tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/top_level.txt 2023-02-05T05:04:15,838 writing manifest file '/tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:15,868 reading manifest file '/tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:15,870 reading manifest template 'MANIFEST.in' 2023-02-05T05:04:16,064 writing manifest file '/tmp/pip-modern-metadata-6eivljux/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:16,066 creating '/tmp/pip-modern-metadata-6eivljux/glycopeptidepy-0.0.23.dist-info' 2023-02-05T05:04:16,267 Preparing metadata (pyproject.toml): finished with status 'done' 2023-02-05T05:04:16,274 Source in /tmp/pip-wheel-oj98u56x/glycopeptidepy_3454013645574e65b42c277710bebc09 has version 0.0.23, which satisfies requirement glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz 2023-02-05T05:04:16,275 Removed glycopeptidepy==0.0.23 from https://files.pythonhosted.org/packages/33/21/3f1e97b40d2c1cdbdfbe013202fde94876f7159e26f83de603c800beb97d/glycopeptidepy-0.0.23.tar.gz from build tracker '/tmp/pip-build-tracker-brpkahmf' 2023-02-05T05:04:16,279 Created temporary directory: /tmp/pip-unpack-nct1pupc 2023-02-05T05:04:16,280 Building wheels for collected packages: glycopeptidepy 2023-02-05T05:04:16,284 Created temporary directory: /tmp/pip-wheel-tib12zts 2023-02-05T05:04:16,285 Destination directory: /tmp/pip-wheel-tib12zts 2023-02-05T05:04:16,287 Building wheel for glycopeptidepy (pyproject.toml): started 2023-02-05T05:04:16,288 Running command Building wheel for glycopeptidepy (pyproject.toml) 2023-02-05T05:04:17,907 running bdist_wheel 2023-02-05T05:04:17,925 running build 2023-02-05T05:04:17,925 running build_py 2023-02-05T05:04:17,934 creating build 2023-02-05T05:04:17,934 creating build/lib.linux-armv7l-cpython-39 2023-02-05T05:04:17,935 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T05:04:17,936 copying src/glycopeptidepy/enzyme.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T05:04:17,939 copying src/glycopeptidepy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T05:04:17,941 copying src/glycopeptidepy/algorithm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T05:04:17,943 copying src/glycopeptidepy/version.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy 2023-02-05T05:04:17,946 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:17,947 copying src/glycopeptidepy/_c/cythonize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:17,949 copying src/glycopeptidepy/_c/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:17,951 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,952 copying src/glycopeptidepy/utils/intervals.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,955 copying src/glycopeptidepy/utils/memoize.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,957 copying src/glycopeptidepy/utils/iterators.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,959 copying src/glycopeptidepy/utils/sequence_tree.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,961 copying src/glycopeptidepy/utils/collectiontools.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,963 copying src/glycopeptidepy/utils/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils 2023-02-05T05:04:17,966 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,966 copying src/glycopeptidepy/structure/residue.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,969 copying src/glycopeptidepy/structure/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,971 copying src/glycopeptidepy/structure/fragment.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,974 copying src/glycopeptidepy/structure/composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,975 copying src/glycopeptidepy/structure/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,978 copying src/glycopeptidepy/structure/terminal_group.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,980 copying src/glycopeptidepy/structure/constants.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,982 copying src/glycopeptidepy/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,983 copying src/glycopeptidepy/structure/parser.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,986 copying src/glycopeptidepy/structure/sequence_composition.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure 2023-02-05T05:04:17,989 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T05:04:17,989 copying src/glycopeptidepy/test/sequence_test_suite.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T05:04:17,992 copying src/glycopeptidepy/test/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/test 2023-02-05T05:04:17,994 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:17,996 copying src/glycopeptidepy/io/mzid.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:17,998 copying src/glycopeptidepy/io/uniprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,001 copying src/glycopeptidepy/io/nextprot.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,002 copying src/glycopeptidepy/io/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,004 copying src/glycopeptidepy/io/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,006 copying src/glycopeptidepy/io/annotation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,008 copying src/glycopeptidepy/io/fasta.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io 2023-02-05T05:04:18,012 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,013 copying src/glycopeptidepy/_c/structure/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,015 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,016 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,018 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,019 copying src/glycopeptidepy/_c/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,022 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:04:18,022 copying src/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:04:18,025 copying src/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:04:18,027 copying src/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:04:18,031 copying src/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:04:18,033 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,034 copying src/glycopeptidepy/structure/modification/modification.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,037 copying src/glycopeptidepy/structure/modification/source.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,039 copying src/glycopeptidepy/structure/modification/descriptors.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,041 copying src/glycopeptidepy/structure/modification/rule.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,044 copying src/glycopeptidepy/structure/modification/utils.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,046 copying src/glycopeptidepy/structure/modification/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,048 copying src/glycopeptidepy/structure/modification/glycosylation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,050 copying src/glycopeptidepy/structure/modification/target.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification 2023-02-05T05:04:18,053 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,054 copying src/glycopeptidepy/structure/sequence/base.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,057 copying src/glycopeptidepy/structure/sequence/implementation.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,060 copying src/glycopeptidepy/structure/sequence/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,061 copying src/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,063 copying src/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence 2023-02-05T05:04:18,066 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,067 copying src/glycopeptidepy/structure/modification/data/unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,070 copying src/glycopeptidepy/structure/modification/data/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,072 copying src/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,074 creating build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T05:04:18,075 copying src/glycopeptidepy/io/cv/term.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T05:04:18,078 copying src/glycopeptidepy/io/cv/uniprot_ptm.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T05:04:18,079 copying src/glycopeptidepy/io/cv/peff.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T05:04:18,082 copying src/glycopeptidepy/io/cv/__init__.py -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv 2023-02-05T05:04:18,083 running egg_info 2023-02-05T05:04:18,104 writing src/glycopeptidepy.egg-info/PKG-INFO 2023-02-05T05:04:18,106 writing dependency_links to src/glycopeptidepy.egg-info/dependency_links.txt 2023-02-05T05:04:18,108 writing requirements to src/glycopeptidepy.egg-info/requires.txt 2023-02-05T05:04:18,109 writing top-level names to src/glycopeptidepy.egg-info/top_level.txt 2023-02-05T05:04:18,126 reading manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:18,131 reading manifest template 'MANIFEST.in' 2023-02-05T05:04:18,324 writing manifest file 'src/glycopeptidepy.egg-info/SOURCES.txt' 2023-02-05T05:04:18,333 copying src/glycopeptidepy/_c/algorithm.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,347 copying src/glycopeptidepy/_c/algorithm.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,350 copying src/glycopeptidepy/_c/collectiontools.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,359 copying src/glycopeptidepy/_c/collectiontools.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,361 copying src/glycopeptidepy/_c/collectiontools.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,363 copying src/glycopeptidepy/_c/compat.h -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,366 copying src/glycopeptidepy/_c/compat.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,368 copying src/glycopeptidepy/_c/count_table.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,386 copying src/glycopeptidepy/_c/count_table.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,389 copying src/glycopeptidepy/_c/count_table.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,392 copying src/glycopeptidepy/_c/parser.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,403 copying src/glycopeptidepy/_c/parser.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,405 copying src/glycopeptidepy/_c/parser.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c 2023-02-05T05:04:18,408 copying src/glycopeptidepy/_c/structure/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,427 copying src/glycopeptidepy/_c/structure/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,429 copying src/glycopeptidepy/_c/structure/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,432 copying src/glycopeptidepy/_c/structure/constants.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,440 copying src/glycopeptidepy/_c/structure/constants.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,442 copying src/glycopeptidepy/_c/structure/constants.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,444 copying src/glycopeptidepy/_c/structure/fragment.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,473 copying src/glycopeptidepy/_c/structure/fragment.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,475 copying src/glycopeptidepy/_c/structure/fragment.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,478 copying src/glycopeptidepy/_c/structure/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,498 copying src/glycopeptidepy/_c/structure/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,500 copying src/glycopeptidepy/_c/structure/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,503 copying src/glycopeptidepy/_c/structure/sequence_methods.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,523 copying src/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,525 copying src/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure 2023-02-05T05:04:18,528 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,542 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,545 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,547 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,586 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,588 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,592 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,634 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,636 copying src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:04:18,640 copying src/glycopeptidepy/_c/structure/modification/modification.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,652 copying src/glycopeptidepy/_c/structure/modification/modification.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,655 copying src/glycopeptidepy/_c/structure/modification/modification.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,657 copying src/glycopeptidepy/_c/structure/modification/rule.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,673 copying src/glycopeptidepy/_c/structure/modification/rule.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,675 copying src/glycopeptidepy/_c/structure/modification/rule.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,678 copying src/glycopeptidepy/_c/structure/modification/source.c -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,690 copying src/glycopeptidepy/_c/structure/modification/source.pxd -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,692 copying src/glycopeptidepy/_c/structure/modification/source.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,694 copying src/glycopeptidepy/_c/structure/modification/target.pyx -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification 2023-02-05T05:04:18,696 copying src/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,699 copying src/glycopeptidepy/structure/modification/data/unimod.json -> build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data 2023-02-05T05:04:18,746 running build_ext 2023-02-05T05:04:18,751 building 'glycopeptidepy._c.collectiontools' extension 2023-02-05T05:04:18,752 creating build/temp.linux-armv7l-cpython-39 2023-02-05T05:04:18,752 creating build/temp.linux-armv7l-cpython-39/src 2023-02-05T05:04:18,753 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy 2023-02-05T05:04:18,754 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c 2023-02-05T05:04:18,755 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/collectiontools.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o 2023-02-05T05:04:22,745 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/collectiontools.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:04:22,869 building 'glycopeptidepy._c.count_table' extension 2023-02-05T05:04:22,869 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/count_table.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o 2023-02-05T05:04:23,803 src/glycopeptidepy/_c/count_table.c:2444:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist’ defined but not used [-Wunused-function] 2023-02-05T05:04:23,803 2444 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_initialize_count_table_bin_freelist(size_t __pyx_v_n, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_inst) { 2023-02-05T05:04:23,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T05:04:23,804 src/glycopeptidepy/_c/count_table.c:2186:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get’ defined but not used [-Wunused-function] 2023-02-05T05:04:23,804 2186 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_get(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-02-05T05:04:23,804 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T05:04:23,805 src/glycopeptidepy/_c/count_table.c:1956:12: warning: ‘__pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put’ defined but not used [-Wunused-function] 2023-02-05T05:04:23,805 1956 | static int __pyx_f_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist_put(struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin_freelist *__pyx_v_freelist, struct __pyx_t_14glycopeptidepy_2_c_11count_table_count_table_bin *__pyx_v_bin) { 2023-02-05T05:04:23,805 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2023-02-05T05:04:31,515 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/count_table.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:04:31,656 building 'glycopeptidepy._c.parser' extension 2023-02-05T05:04:31,657 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/parser.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o 2023-02-05T05:04:31,972 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-02-05T05:04:31,973 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-02-05T05:04:31,973 38 | #define PyInt_Check PyLong_Check 2023-02-05T05:04:31,973 | 2023-02-05T05:04:31,975 src/glycopeptidepy/_c/parser.c:670: note: this is the location of the previous definition 2023-02-05T05:04:31,975 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-02-05T05:04:31,975 | 2023-02-05T05:04:31,975 In file included from src/glycopeptidepy/_c/parser.c:763: 2023-02-05T05:04:31,975 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-02-05T05:04:31,976 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-02-05T05:04:31,976 | 2023-02-05T05:04:31,976 src/glycopeptidepy/_c/parser.c:671: note: this is the location of the previous definition 2023-02-05T05:04:31,976 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-02-05T05:04:31,976 | 2023-02-05T05:04:31,985 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser__cstring_sequence_tokenizer’: 2023-02-05T05:04:31,986 src/glycopeptidepy/_c/parser.c:2004:21: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:31,986 2004 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-02-05T05:04:31,986 | ^ 2023-02-05T05:04:32,014 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_fuse_1__pyx_f_14glycopeptidepy_2_c_6parser__sequence_tokenizer’: 2023-02-05T05:04:32,016 src/glycopeptidepy/_c/parser.c:4494:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T05:04:32,017 4494 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 295, __pyx_L1_error) 2023-02-05T05:04:32,017 | ^~ 2023-02-05T05:04:32,023 src/glycopeptidepy/_c/parser.c:4921:66: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T05:04:32,024 4921 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 328, __pyx_L1_error) 2023-02-05T05:04:32,024 | ^~ 2023-02-05T05:04:32,028 src/glycopeptidepy/_c/parser.c:5127:64: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T05:04:32,028 5127 | if (!(likely(PyList_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "list", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 344, __pyx_L1_error) 2023-02-05T05:04:32,028 | ^~ 2023-02-05T05:04:32,039 src/glycopeptidepy/_c/parser.c: In function ‘__pyx_f_14glycopeptidepy_2_c_6parser_parse_simple’: 2023-02-05T05:04:32,042 src/glycopeptidepy/_c/parser.c:5990:23: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:32,042 5990 | __pyx_v_csequence = PyStr_AsString(__pyx_v_sequence); 2023-02-05T05:04:32,043 | ^ 2023-02-05T05:04:37,450 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/parser.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:04:37,570 building 'glycopeptidepy._c.structure.base' extension 2023-02-05T05:04:37,570 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure 2023-02-05T05:04:37,571 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o 2023-02-05T05:04:49,714 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:04:49,870 building 'glycopeptidepy._c.structure.fragment' extension 2023-02-05T05:04:49,870 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragment.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o 2023-02-05T05:04:50,204 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-02-05T05:04:50,204 src/glycopeptidepy/_c/compat.h:38: warning: "PyInt_Check" redefined 2023-02-05T05:04:50,204 38 | #define PyInt_Check PyLong_Check 2023-02-05T05:04:50,204 | 2023-02-05T05:04:50,213 src/glycopeptidepy/_c/structure/fragment.c:670: note: this is the location of the previous definition 2023-02-05T05:04:50,214 670 | #define PyInt_Check(op) PyLong_Check(op) 2023-02-05T05:04:50,214 | 2023-02-05T05:04:50,214 In file included from src/glycopeptidepy/_c/structure/fragment.c:764: 2023-02-05T05:04:50,214 src/glycopeptidepy/_c/compat.h:39: warning: "PyInt_CheckExact" redefined 2023-02-05T05:04:50,214 39 | #define PyInt_CheckExact PyLong_CheckExact 2023-02-05T05:04:50,215 | 2023-02-05T05:04:50,215 src/glycopeptidepy/_c/structure/fragment.c:671: note: this is the location of the previous definition 2023-02-05T05:04:50,215 671 | #define PyInt_CheckExact(op) PyLong_CheckExact(op) 2023-02-05T05:04:50,215 | 2023-02-05T05:04:50,249 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_init_str_ints’: 2023-02-05T05:04:50,252 src/glycopeptidepy/_c/structure/fragment.c:3243:19: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,252 3243 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-02-05T05:04:50,252 | ^ 2023-02-05T05:04:50,254 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_get_str_int’: 2023-02-05T05:04:50,257 src/glycopeptidepy/_c/structure/fragment.c:3472:17: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,257 3472 | __pyx_v_atemp = PyStr_AsUTF8AndSize(__pyx_v_pa, (&__pyx_v_z)); 2023-02-05T05:04:50,257 | ^ 2023-02-05T05:04:50,374 src/glycopeptidepy/_c/structure/fragment.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_8fragment_15PeptideFragment_get_fragment_name’: 2023-02-05T05:04:50,379 src/glycopeptidepy/_c/structure/fragment.c:10375:22: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,379 10375 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T05:04:50,380 | ^ 2023-02-05T05:04:50,388 src/glycopeptidepy/_c/structure/fragment.c:10690:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,389 10690 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T05:04:50,389 | ^ 2023-02-05T05:04:50,395 src/glycopeptidepy/_c/structure/fragment.c:10864:28: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,395 10864 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T05:04:50,395 | ^ 2023-02-05T05:04:50,401 src/glycopeptidepy/_c/structure/fragment.c:11043:24: warning: assignment discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2023-02-05T05:04:50,401 11043 | __pyx_v_tmp_buffer = PyStr_AsUTF8AndSize(((PyObject*)__pyx_t_2), (&__pyx_v_size_ref)); 2023-02-05T05:04:50,402 | ^ 2023-02-05T05:05:10,213 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragment.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:10,399 building 'glycopeptidepy._c.structure.constants' extension 2023-02-05T05:05:10,400 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/constants.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o 2023-02-05T05:05:13,520 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/constants.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:13,636 building 'glycopeptidepy._c.structure.glycan' extension 2023-02-05T05:05:13,637 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o 2023-02-05T05:05:13,976 src/glycopeptidepy/_c/structure/glycan.c: In function ‘__pyx_fuse_0__pyx_f_14glycopeptidepy_2_c_9structure_6glycan_22GlycanCompositionProxy__create’: 2023-02-05T05:05:13,977 src/glycopeptidepy/_c/structure/glycan.c:2608:58: warning: self-comparison always evaluates to true [-Wtautological-compare] 2023-02-05T05:05:13,977 2608 | if (!(likely(PyString_CheckExact(Py_None))||((Py_None) == Py_None)||((void)PyErr_Format(PyExc_TypeError, "Expected %.16s, got %.200s", "str", Py_TYPE(Py_None)->tp_name), 0))) __PYX_ERR(0, 28, __pyx_L1_error) 2023-02-05T05:05:13,977 | ^~ 2023-02-05T05:05:25,831 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:25,992 building 'glycopeptidepy._c.structure.sequence_methods' extension 2023-02-05T05:05:25,993 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/sequence_methods.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o 2023-02-05T05:05:26,496 src/glycopeptidepy/_c/structure/sequence_methods.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_16sequence_methods_add_modification’: 2023-02-05T05:05:26,502 src/glycopeptidepy/_c/structure/sequence_methods.c:11799:37: warning: comparison of integer expressions of different signedness: ‘long int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2023-02-05T05:05:26,502 11799 | __pyx_t_2 = ((__pyx_v_position_ >= ((struct __pyx_vtabstruct_14glycopeptidepy_2_c_9structure_16sequence_methods__PeptideSequenceCore *)__pyx_v_self->__pyx_base.__pyx_vtab)->get_size(__pyx_v_self)) != 0); 2023-02-05T05:05:26,502 | ^~ 2023-02-05T05:05:38,385 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/sequence_methods.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:38,535 building 'glycopeptidepy._c.structure.modification.rule' extension 2023-02-05T05:05:38,536 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification 2023-02-05T05:05:38,537 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/rule.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o 2023-02-05T05:05:46,321 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/rule.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:46,458 building 'glycopeptidepy._c.structure.modification.modification' extension 2023-02-05T05:05:46,459 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/modification.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o 2023-02-05T05:05:50,484 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/modification.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:50,605 building 'glycopeptidepy._c.structure.modification.source' extension 2023-02-05T05:05:50,606 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/modification/source.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o 2023-02-05T05:05:54,805 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/modification/source.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:54,943 building 'glycopeptidepy._c.structure.fragmentation_strategy.base' extension 2023-02-05T05:05:54,945 creating build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:05:54,946 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o 2023-02-05T05:05:59,070 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/base.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:05:59,191 building 'glycopeptidepy._c.structure.fragmentation_strategy.peptide' extension 2023-02-05T05:05:59,192 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o 2023-02-05T05:06:27,046 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:06:27,268 building 'glycopeptidepy._c.structure.fragmentation_strategy.glycan' extension 2023-02-05T05:06:27,269 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o 2023-02-05T05:06:27,745 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_fucosylate_extended’: 2023-02-05T05:06:27,749 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9538:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-02-05T05:06:27,750 9538 | for (__pyx_t_10 = 0; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-02-05T05:06:27,750 | ^ 2023-02-05T05:06:27,754 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:9554:35: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare] 2023-02-05T05:06:27,755 9554 | for (__pyx_t_10 = 1; __pyx_t_10 < __pyx_t_9; __pyx_t_10+=1) { 2023-02-05T05:06:27,755 | ^ 2023-02-05T05:06:27,837 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_n_glycan_stub_fragments’: 2023-02-05T05:06:27,844 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:13646:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:06:27,845 13646 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:06:27,845 | ^ 2023-02-05T05:06:27,856 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_o_glycan_stub_fragments’: 2023-02-05T05:06:27,864 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14270:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-02-05T05:06:27,864 14270 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-02-05T05:06:27,864 | ^ 2023-02-05T05:06:27,876 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:14028:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-02-05T05:06:27,876 14028 | int __pyx_t_15; 2023-02-05T05:06:27,876 | ^~~~~~~~~~ 2023-02-05T05:06:27,907 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_gag_linker_stub_fragments’: 2023-02-05T05:06:27,915 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:16077:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 2023-02-05T05:06:27,916 16077 | for (__pyx_t_7 = 0; __pyx_t_7 < __pyx_t_13; __pyx_t_7+=1) { 2023-02-05T05:06:27,916 | ^ 2023-02-05T05:06:27,929 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:15835:7: warning: variable ‘__pyx_t_15’ set but not used [-Wunused-but-set-variable] 2023-02-05T05:06:27,929 15835 | int __pyx_t_15; 2023-02-05T05:06:27,929 | ^~~~~~~~~~ 2023-02-05T05:06:27,955 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c: In function ‘__pyx_f_14glycopeptidepy_2_c_9structure_22fragmentation_strategy_6glycan_24StubGlycopeptideStrategy_mixed_stub_fragments’: 2023-02-05T05:06:27,964 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17329:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:06:27,964 17329 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:06:27,964 | ^ 2023-02-05T05:06:27,974 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17387:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:06:27,974 17387 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:06:27,974 | ^ 2023-02-05T05:06:27,984 src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c:17445:33: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 2023-02-05T05:06:27,984 17445 | for (__pyx_t_9 = 0; __pyx_t_9 < __pyx_t_8; __pyx_t_9+=1) { 2023-02-05T05:06:27,985 | ^ 2023-02-05T05:06:47,735 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:06:47,928 building 'glycopeptidepy._c.algorithm' extension 2023-02-05T05:06:47,929 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Isrc/glycopeptidepy/_c -I/usr/include/python3.9 -c src/glycopeptidepy/_c/algorithm.c -o build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o 2023-02-05T05:06:56,269 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/src/glycopeptidepy/_c/algorithm.o -L/usr/lib -o build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so 2023-02-05T05:06:56,433 installing to build/bdist.linux-armv7l/wheel 2023-02-05T05:06:56,433 running install 2023-02-05T05:06:56,459 running install_lib 2023-02-05T05:06:56,468 creating build/bdist.linux-armv7l 2023-02-05T05:06:56,468 creating build/bdist.linux-armv7l/wheel 2023-02-05T05:06:56,470 creating build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:06:56,472 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,473 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,475 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/cythonize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,477 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,480 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,488 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,491 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/compat.h -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,493 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,497 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,506 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,508 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,510 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,512 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,514 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,526 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,542 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/count_table.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,560 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:56,576 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,577 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,585 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,586 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,596 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,599 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,602 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,604 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,614 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,616 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,618 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,620 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,651 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,687 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,730 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,732 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/fragmentation_strategy 2023-02-05T05:06:56,765 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,768 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,769 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,771 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/target.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,773 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,776 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,785 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,803 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,805 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,807 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,809 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,818 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,820 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/rule.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,841 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/source.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,844 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,854 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure/modification 2023-02-05T05:06:56,864 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,896 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,898 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,922 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,925 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,929 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,949 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,974 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,977 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,980 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,987 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,989 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/constants.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,992 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/base.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:56,994 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,015 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.c -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,040 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.pxd -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,043 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,065 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/sequence_methods.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,068 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c/structure 2023-02-05T05:06:57,098 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:57,108 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:57,125 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/_c/collectiontools.pyx -> build/bdist.linux-armv7l/wheel/glycopeptidepy/_c 2023-02-05T05:06:57,128 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/enzyme.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:06:57,131 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,133 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/intervals.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,136 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/memoize.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,139 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/iterators.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,141 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/sequence_tree.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,144 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/collectiontools.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,147 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/utils/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/utils 2023-02-05T05:06:57,149 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:06:57,152 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/algorithm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:06:57,156 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/version.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy 2023-02-05T05:06:57,159 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,161 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:06:57,162 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/peptide.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:06:57,166 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:06:57,169 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:06:57,172 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragmentation_strategy/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/fragmentation_strategy 2023-02-05T05:06:57,175 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/residue.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,179 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,180 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/modification.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,183 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/source.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,187 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/descriptors.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,189 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/rule.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,193 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,195 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,198 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/glycosylation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,203 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,205 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,207 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.json -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,247 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,250 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,252 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/data/patch_unimod.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification/data 2023-02-05T05:06:57,255 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/modification/target.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/modification 2023-02-05T05:06:57,258 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,260 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/fragment.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,263 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,266 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/glycan.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,270 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,271 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/base.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,274 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/implementation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,277 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,279 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/mutable_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,282 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence/glycosylated_sequence.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure/sequence 2023-02-05T05:06:57,285 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/terminal_group.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,288 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/constants.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,290 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,293 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/parser.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,296 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/structure/sequence_composition.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/structure 2023-02-05T05:06:57,299 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:06:57,301 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/sequence_test_suite.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:06:57,304 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/test/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/test 2023-02-05T05:06:57,307 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,309 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/mzid.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,312 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/uniprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,315 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/nextprot.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,319 creating build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:06:57,320 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/term.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:06:57,323 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/uniprot_ptm.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:06:57,326 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/peff.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:06:57,329 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/cv/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io/cv 2023-02-05T05:06:57,331 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/utils.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,333 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/__init__.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,335 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/annotation.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,339 copying build/lib.linux-armv7l-cpython-39/glycopeptidepy/io/fasta.py -> build/bdist.linux-armv7l/wheel/glycopeptidepy/io 2023-02-05T05:06:57,342 running install_egg_info 2023-02-05T05:06:57,357 Copying src/glycopeptidepy.egg-info to build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.23-py3.9.egg-info 2023-02-05T05:06:57,373 running install_scripts 2023-02-05T05:06:57,447 creating build/bdist.linux-armv7l/wheel/glycopeptidepy-0.0.23.dist-info/WHEEL 2023-02-05T05:06:57,451 creating '/tmp/pip-wheel-tib12zts/.tmp-ga37kma1/glycopeptidepy-0.0.23-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-05T05:06:57,454 adding 'glycopeptidepy/__init__.py' 2023-02-05T05:06:57,457 adding 'glycopeptidepy/algorithm.py' 2023-02-05T05:06:57,459 adding 'glycopeptidepy/enzyme.py' 2023-02-05T05:06:57,461 adding 'glycopeptidepy/version.py' 2023-02-05T05:06:57,463 adding 'glycopeptidepy/_c/__init__.py' 2023-02-05T05:06:57,504 adding 'glycopeptidepy/_c/algorithm.c' 2023-02-05T05:06:57,634 adding 'glycopeptidepy/_c/algorithm.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:57,640 adding 'glycopeptidepy/_c/algorithm.pyx' 2023-02-05T05:06:57,666 adding 'glycopeptidepy/_c/collectiontools.c' 2023-02-05T05:06:57,725 adding 'glycopeptidepy/_c/collectiontools.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:57,728 adding 'glycopeptidepy/_c/collectiontools.pxd' 2023-02-05T05:06:57,730 adding 'glycopeptidepy/_c/collectiontools.pyx' 2023-02-05T05:06:57,732 adding 'glycopeptidepy/_c/compat.h' 2023-02-05T05:06:57,734 adding 'glycopeptidepy/_c/compat.pxd' 2023-02-05T05:06:57,782 adding 'glycopeptidepy/_c/count_table.c' 2023-02-05T05:06:57,911 adding 'glycopeptidepy/_c/count_table.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:57,917 adding 'glycopeptidepy/_c/count_table.pxd' 2023-02-05T05:06:57,921 adding 'glycopeptidepy/_c/count_table.pyx' 2023-02-05T05:06:57,923 adding 'glycopeptidepy/_c/cythonize.py' 2023-02-05T05:06:57,953 adding 'glycopeptidepy/_c/parser.c' 2023-02-05T05:06:58,025 adding 'glycopeptidepy/_c/parser.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:58,029 adding 'glycopeptidepy/_c/parser.pxd' 2023-02-05T05:06:58,031 adding 'glycopeptidepy/_c/parser.pyx' 2023-02-05T05:06:58,034 adding 'glycopeptidepy/_c/structure/__init__.py' 2023-02-05T05:06:58,090 adding 'glycopeptidepy/_c/structure/base.c' 2023-02-05T05:06:58,275 adding 'glycopeptidepy/_c/structure/base.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:58,283 adding 'glycopeptidepy/_c/structure/base.pxd' 2023-02-05T05:06:58,285 adding 'glycopeptidepy/_c/structure/base.pyx' 2023-02-05T05:06:58,305 adding 'glycopeptidepy/_c/structure/constants.c' 2023-02-05T05:06:58,352 adding 'glycopeptidepy/_c/structure/constants.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:58,356 adding 'glycopeptidepy/_c/structure/constants.pxd' 2023-02-05T05:06:58,357 adding 'glycopeptidepy/_c/structure/constants.pyx' 2023-02-05T05:06:58,446 adding 'glycopeptidepy/_c/structure/fragment.c' 2023-02-05T05:06:58,735 adding 'glycopeptidepy/_c/structure/fragment.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:58,747 adding 'glycopeptidepy/_c/structure/fragment.pxd' 2023-02-05T05:06:58,750 adding 'glycopeptidepy/_c/structure/fragment.pyx' 2023-02-05T05:06:58,805 adding 'glycopeptidepy/_c/structure/glycan.c' 2023-02-05T05:06:58,990 adding 'glycopeptidepy/_c/structure/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:58,997 adding 'glycopeptidepy/_c/structure/glycan.pxd' 2023-02-05T05:06:59,000 adding 'glycopeptidepy/_c/structure/glycan.pyx' 2023-02-05T05:06:59,057 adding 'glycopeptidepy/_c/structure/sequence_methods.c' 2023-02-05T05:06:59,238 adding 'glycopeptidepy/_c/structure/sequence_methods.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:59,245 adding 'glycopeptidepy/_c/structure/sequence_methods.pxd' 2023-02-05T05:06:59,248 adding 'glycopeptidepy/_c/structure/sequence_methods.pyx' 2023-02-05T05:06:59,251 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/__init__.py' 2023-02-05T05:06:59,278 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.c' 2023-02-05T05:06:59,341 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:59,344 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pxd' 2023-02-05T05:06:59,346 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/base.pyx' 2023-02-05T05:06:59,432 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.c' 2023-02-05T05:06:59,708 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:06:59,719 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pxd' 2023-02-05T05:06:59,724 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/glycan.pyx' 2023-02-05T05:06:59,847 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.c' 2023-02-05T05:07:00,221 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:07:00,235 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pxd' 2023-02-05T05:07:00,238 adding 'glycopeptidepy/_c/structure/fragmentation_strategy/peptide.pyx' 2023-02-05T05:07:00,241 adding 'glycopeptidepy/_c/structure/modification/__init__.py' 2023-02-05T05:07:00,266 adding 'glycopeptidepy/_c/structure/modification/modification.c' 2023-02-05T05:07:00,329 adding 'glycopeptidepy/_c/structure/modification/modification.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:07:00,333 adding 'glycopeptidepy/_c/structure/modification/modification.pxd' 2023-02-05T05:07:00,335 adding 'glycopeptidepy/_c/structure/modification/modification.pyx' 2023-02-05T05:07:00,374 adding 'glycopeptidepy/_c/structure/modification/rule.c' 2023-02-05T05:07:00,493 adding 'glycopeptidepy/_c/structure/modification/rule.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:07:00,499 adding 'glycopeptidepy/_c/structure/modification/rule.pxd' 2023-02-05T05:07:00,501 adding 'glycopeptidepy/_c/structure/modification/rule.pyx' 2023-02-05T05:07:00,527 adding 'glycopeptidepy/_c/structure/modification/source.c' 2023-02-05T05:07:00,592 adding 'glycopeptidepy/_c/structure/modification/source.cpython-39-arm-linux-gnueabihf.so' 2023-02-05T05:07:00,596 adding 'glycopeptidepy/_c/structure/modification/source.pxd' 2023-02-05T05:07:00,598 adding 'glycopeptidepy/_c/structure/modification/source.pyx' 2023-02-05T05:07:00,600 adding 'glycopeptidepy/_c/structure/modification/target.pyx' 2023-02-05T05:07:00,602 adding 'glycopeptidepy/io/__init__.py' 2023-02-05T05:07:00,604 adding 'glycopeptidepy/io/annotation.py' 2023-02-05T05:07:00,609 adding 'glycopeptidepy/io/fasta.py' 2023-02-05T05:07:00,611 adding 'glycopeptidepy/io/mzid.py' 2023-02-05T05:07:00,613 adding 'glycopeptidepy/io/nextprot.py' 2023-02-05T05:07:00,616 adding 'glycopeptidepy/io/uniprot.py' 2023-02-05T05:07:00,618 adding 'glycopeptidepy/io/utils.py' 2023-02-05T05:07:00,620 adding 'glycopeptidepy/io/cv/__init__.py' 2023-02-05T05:07:00,622 adding 'glycopeptidepy/io/cv/peff.py' 2023-02-05T05:07:00,624 adding 'glycopeptidepy/io/cv/term.py' 2023-02-05T05:07:00,626 adding 'glycopeptidepy/io/cv/uniprot_ptm.py' 2023-02-05T05:07:00,629 adding 'glycopeptidepy/structure/__init__.py' 2023-02-05T05:07:00,631 adding 'glycopeptidepy/structure/base.py' 2023-02-05T05:07:00,632 adding 'glycopeptidepy/structure/composition.py' 2023-02-05T05:07:00,634 adding 'glycopeptidepy/structure/constants.py' 2023-02-05T05:07:00,637 adding 'glycopeptidepy/structure/fragment.py' 2023-02-05T05:07:00,640 adding 'glycopeptidepy/structure/glycan.py' 2023-02-05T05:07:00,642 adding 'glycopeptidepy/structure/parser.py' 2023-02-05T05:07:00,644 adding 'glycopeptidepy/structure/residue.py' 2023-02-05T05:07:00,647 adding 'glycopeptidepy/structure/sequence_composition.py' 2023-02-05T05:07:00,649 adding 'glycopeptidepy/structure/terminal_group.py' 2023-02-05T05:07:00,651 adding 'glycopeptidepy/structure/fragmentation_strategy/__init__.py' 2023-02-05T05:07:00,653 adding 'glycopeptidepy/structure/fragmentation_strategy/base.py' 2023-02-05T05:07:00,658 adding 'glycopeptidepy/structure/fragmentation_strategy/glycan.py' 2023-02-05T05:07:00,662 adding 'glycopeptidepy/structure/fragmentation_strategy/peptide.py' 2023-02-05T05:07:00,664 adding 'glycopeptidepy/structure/modification/__init__.py' 2023-02-05T05:07:00,666 adding 'glycopeptidepy/structure/modification/descriptors.py' 2023-02-05T05:07:00,668 adding 'glycopeptidepy/structure/modification/glycosylation.py' 2023-02-05T05:07:00,671 adding 'glycopeptidepy/structure/modification/modification.py' 2023-02-05T05:07:00,674 adding 'glycopeptidepy/structure/modification/rule.py' 2023-02-05T05:07:00,677 adding 'glycopeptidepy/structure/modification/source.py' 2023-02-05T05:07:00,679 adding 'glycopeptidepy/structure/modification/target.py' 2023-02-05T05:07:00,681 adding 'glycopeptidepy/structure/modification/utils.py' 2023-02-05T05:07:00,684 adding 'glycopeptidepy/structure/modification/data/ProteinProspectorModifications-for_gly2.csv' 2023-02-05T05:07:00,685 adding 'glycopeptidepy/structure/modification/data/__init__.py' 2023-02-05T05:07:00,687 adding 'glycopeptidepy/structure/modification/data/patch_unimod.py' 2023-02-05T05:07:00,754 adding 'glycopeptidepy/structure/modification/data/unimod.json' 2023-02-05T05:07:00,769 adding 'glycopeptidepy/structure/modification/data/unimod.py' 2023-02-05T05:07:00,771 adding 'glycopeptidepy/structure/sequence/__init__.py' 2023-02-05T05:07:00,774 adding 'glycopeptidepy/structure/sequence/base.py' 2023-02-05T05:07:00,776 adding 'glycopeptidepy/structure/sequence/glycosylated_sequence.py' 2023-02-05T05:07:00,778 adding 'glycopeptidepy/structure/sequence/implementation.py' 2023-02-05T05:07:00,780 adding 'glycopeptidepy/structure/sequence/mutable_sequence.py' 2023-02-05T05:07:00,783 adding 'glycopeptidepy/test/__init__.py' 2023-02-05T05:07:00,785 adding 'glycopeptidepy/test/sequence_test_suite.py' 2023-02-05T05:07:00,787 adding 'glycopeptidepy/utils/__init__.py' 2023-02-05T05:07:00,789 adding 'glycopeptidepy/utils/collectiontools.py' 2023-02-05T05:07:00,792 adding 'glycopeptidepy/utils/intervals.py' 2023-02-05T05:07:00,794 adding 'glycopeptidepy/utils/iterators.py' 2023-02-05T05:07:00,795 adding 'glycopeptidepy/utils/memoize.py' 2023-02-05T05:07:00,797 adding 'glycopeptidepy/utils/sequence_tree.py' 2023-02-05T05:07:00,800 adding 'glycopeptidepy-0.0.23.dist-info/METADATA' 2023-02-05T05:07:00,801 adding 'glycopeptidepy-0.0.23.dist-info/WHEEL' 2023-02-05T05:07:00,803 adding 'glycopeptidepy-0.0.23.dist-info/top_level.txt' 2023-02-05T05:07:00,805 adding 'glycopeptidepy-0.0.23.dist-info/RECORD' 2023-02-05T05:07:00,893 removing build/bdist.linux-armv7l/wheel 2023-02-05T05:07:01,097 Building wheel for glycopeptidepy (pyproject.toml): finished with status 'done' 2023-02-05T05:07:01,218 Created wheel for glycopeptidepy: filename=glycopeptidepy-0.0.23-cp39-cp39-linux_armv7l.whl size=5393287 sha256=67e0afedfc7209235ed5db24eb6fdf9258c11aed45cdeffe86d7a45025dbc2e6 2023-02-05T05:07:01,219 Stored in directory: /tmp/pip-ephem-wheel-cache-nws33oy6/wheels/85/42/e3/033450ed7f00bcae20bc934177947b3fd8c7ac97a9e7c98736 2023-02-05T05:07:01,237 Successfully built glycopeptidepy 2023-02-05T05:07:01,385 Removed build tracker: '/tmp/pip-build-tracker-brpkahmf'