2023-02-07T10:32:14,590 Created temporary directory: /tmp/pip-ephem-wheel-cache-jw50_j6l 2023-02-07T10:32:14,592 Created temporary directory: /tmp/pip-build-tracker-3l49qzvs 2023-02-07T10:32:14,592 Initialized build tracking at /tmp/pip-build-tracker-3l49qzvs 2023-02-07T10:32:14,592 Created build tracker: /tmp/pip-build-tracker-3l49qzvs 2023-02-07T10:32:14,592 Entered build tracker: /tmp/pip-build-tracker-3l49qzvs 2023-02-07T10:32:14,593 Created temporary directory: /tmp/pip-wheel-lryklqd9 2023-02-07T10:32:14,596 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-07T10:32:14,599 Created temporary directory: /tmp/pip-ephem-wheel-cache-j24ib0zh 2023-02-07T10:32:14,626 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-07T10:32:14,629 2 location(s) to search for versions of funid: 2023-02-07T10:32:14,629 * https://pypi.org/simple/funid/ 2023-02-07T10:32:14,629 * https://www.piwheels.org/simple/funid/ 2023-02-07T10:32:14,629 Fetching project page and analyzing links: https://pypi.org/simple/funid/ 2023-02-07T10:32:14,630 Getting page https://pypi.org/simple/funid/ 2023-02-07T10:32:14,631 Found index url https://pypi.org/simple 2023-02-07T10:32:14,684 Fetched page https://pypi.org/simple/funid/ as application/vnd.pypi.simple.v1+json 2023-02-07T10:32:14,686 Found link https://files.pythonhosted.org/packages/b0/d0/b9677ff882d01786ca1981c74fefbb390901732cac86cb16d066cfbcee73/FunID-0.3.0.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.0 2023-02-07T10:32:14,687 Skipping link: No binaries permitted for funid: https://files.pythonhosted.org/packages/6a/08/2bccf4d17d6297e5c52bcba4eda5d5a1ed634eeb4c048a6a0492bf26f0e2/FunID-0.3.2-py2.py3-none-any.whl (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-02-07T10:32:14,687 Found link https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz (from https://pypi.org/simple/funid/) (requires-python:<3.11, >3.8), version: 0.3.2 2023-02-07T10:32:14,687 Fetching project page and analyzing links: https://www.piwheels.org/simple/funid/ 2023-02-07T10:32:14,688 Getting page https://www.piwheels.org/simple/funid/ 2023-02-07T10:32:14,689 Found index url https://www.piwheels.org/simple 2023-02-07T10:32:14,855 Fetched page https://www.piwheels.org/simple/funid/ as text/html 2023-02-07T10:32:14,856 Skipping link: No binaries permitted for funid: https://www.piwheels.org/simple/funid/FunID-0.3.0-py3-none-any.whl#sha256=e875a0092c43c61afaa8f12b92c67d0ae13e5a081dc0f494828474f50c67bfd2 (from https://www.piwheels.org/simple/funid/) (requires-python:<3.11, >3.8) 2023-02-07T10:32:14,857 Skipping link: not a file: https://www.piwheels.org/simple/funid/ 2023-02-07T10:32:14,857 Skipping link: not a file: https://pypi.org/simple/funid/ 2023-02-07T10:32:14,875 Given no hashes to check 1 links for project 'funid': discarding no candidates 2023-02-07T10:32:14,891 Collecting funid==0.3.2 2023-02-07T10:32:14,894 Created temporary directory: /tmp/pip-unpack-y2q04g6n 2023-02-07T10:32:15,558 Downloading FunID-0.3.2.tar.gz (65.2 MB) 2023-02-07T10:32:45,217 Added funid==0.3.2 from https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz to build tracker '/tmp/pip-build-tracker-3l49qzvs' 2023-02-07T10:32:45,219 Running setup.py (path:/tmp/pip-wheel-lryklqd9/funid_346deccc78d44cd2b03b466fb21865ff/setup.py) egg_info for package funid 2023-02-07T10:32:45,219 Created temporary directory: /tmp/pip-pip-egg-info-x8hsve1_ 2023-02-07T10:32:45,220 Preparing metadata (setup.py): started 2023-02-07T10:32:45,221 Running command python setup.py egg_info 2023-02-07T10:32:46,309 {'name': 'FunID', 'version': '0.3.2', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-02-07T10:32:46,310 running egg_info 2023-02-07T10:32:46,311 creating /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info 2023-02-07T10:32:46,334 writing /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/PKG-INFO 2023-02-07T10:32:46,337 writing dependency_links to /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/dependency_links.txt 2023-02-07T10:32:46,339 writing entry points to /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/entry_points.txt 2023-02-07T10:32:46,340 writing requirements to /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/requires.txt 2023-02-07T10:32:46,341 writing top-level names to /tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/top_level.txt 2023-02-07T10:32:46,343 writing manifest file '/tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/SOURCES.txt' 2023-02-07T10:32:46,428 reading manifest file '/tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/SOURCES.txt' 2023-02-07T10:32:46,430 adding license file 'LICENSE' 2023-02-07T10:32:46,433 writing manifest file '/tmp/pip-pip-egg-info-x8hsve1_/FunID.egg-info/SOURCES.txt' 2023-02-07T10:32:46,545 Preparing metadata (setup.py): finished with status 'done' 2023-02-07T10:32:46,551 Source in /tmp/pip-wheel-lryklqd9/funid_346deccc78d44cd2b03b466fb21865ff has version 0.3.2, which satisfies requirement funid==0.3.2 from https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz 2023-02-07T10:32:46,552 Removed funid==0.3.2 from https://files.pythonhosted.org/packages/4f/38/873f19b14c7c4ddfcd7f26ae1d2bd8a785a00b43931b2495493aa52029ff/FunID-0.3.2.tar.gz from build tracker '/tmp/pip-build-tracker-3l49qzvs' 2023-02-07T10:32:46,559 Created temporary directory: /tmp/pip-unpack-z6hvxtmd 2023-02-07T10:32:46,559 Building wheels for collected packages: funid 2023-02-07T10:32:46,564 Created temporary directory: /tmp/pip-wheel-79qjn11l 2023-02-07T10:32:46,564 Building wheel for funid (setup.py): started 2023-02-07T10:32:46,565 Destination directory: /tmp/pip-wheel-79qjn11l 2023-02-07T10:32:46,565 Running command python setup.py bdist_wheel 2023-02-07T10:32:47,401 {'name': 'FunID', 'version': '0.3.2', 'description': 'Fungal Identification Pipeline', 'author': 'Changwan Seo', 'author_email': 'wan101010@snu.ac.kr', 'url': 'https://github.com/Changwanseo/FunID', 'python_requires': '<3.11, >3.8', 'packages': ['funid', 'funid.src', 'funid.data', 'funid.test_dataset', 'funid.preset'], 'install_requires': ['biopython==1.78', 'ete3==3.1.2', 'Cython', 'dendropy', 'GenMine', 'lxml', 'matplotlib==3.5.1', 'numpy==1.22.3', 'openpyxl==3.0.9', 'pandas==1.4.2', 'plotly==5.9.0', 'PyQt5>=5.9.2', 'pyyaml', 'sip>=4.19.4', 'scikit-learn==1.0.2', 'tabulate', 'unidecode==1.2.0', 'xlrd==2.0.1', 'xlsxwriter', 'xmltodict==0.12.0'], 'zip_safe': False, 'entry_points': {'console_scripts': ['FunID = funid.main:main']}, 'package_dir': {'funid': 'funid'}, 'package_data': {'funid.data': ['*.xlsx', '*.txt'], 'funid.test_dataset': ['**'], 'funid.preset': ['**']}, 'include_package_data': True, 'license': 'GPL3'} 2023-02-07T10:32:47,750 running bdist_wheel 2023-02-07T10:32:48,176 running build 2023-02-07T10:32:48,176 running build_py 2023-02-07T10:32:48,206 creating build 2023-02-07T10:32:48,206 creating build/lib 2023-02-07T10:32:48,207 creating build/lib/funid 2023-02-07T10:32:48,208 copying funid/__init__.py -> build/lib/funid 2023-02-07T10:32:48,209 copying funid/FunID_GUI.py -> build/lib/funid 2023-02-07T10:32:48,212 copying funid/main.py -> build/lib/funid 2023-02-07T10:32:48,215 creating build/lib/funid/src 2023-02-07T10:32:48,216 copying funid/src/__init__.py -> build/lib/funid/src 2023-02-07T10:32:48,218 copying funid/src/search.py -> build/lib/funid/src 2023-02-07T10:32:48,220 copying funid/src/hasher.py -> build/lib/funid/src 2023-02-07T10:32:48,221 copying funid/src/dataset.py -> build/lib/funid/src 2023-02-07T10:32:48,224 copying funid/src/initialize.py -> build/lib/funid/src 2023-02-07T10:32:48,226 copying funid/src/trim.py -> build/lib/funid/src 2023-02-07T10:32:48,227 copying funid/src/multigene.py -> build/lib/funid/src 2023-02-07T10:32:48,230 copying funid/src/manage_input.py -> build/lib/funid/src 2023-02-07T10:32:48,232 copying funid/src/opt_generator.py -> build/lib/funid/src 2023-02-07T10:32:48,234 copying funid/src/ncbi.py -> build/lib/funid/src 2023-02-07T10:32:48,236 copying funid/src/save.py -> build/lib/funid/src 2023-02-07T10:32:48,238 copying funid/src/cluster.py -> build/lib/funid/src 2023-02-07T10:32:48,241 copying funid/src/logics.py -> build/lib/funid/src 2023-02-07T10:32:48,243 copying funid/src/tree.py -> build/lib/funid/src 2023-02-07T10:32:48,245 copying funid/src/reporter.py -> build/lib/funid/src 2023-02-07T10:32:48,248 copying funid/src/validate_option.py -> build/lib/funid/src 2023-02-07T10:32:48,252 copying funid/src/command.py -> build/lib/funid/src 2023-02-07T10:32:48,254 copying funid/src/align.py -> build/lib/funid/src 2023-02-07T10:32:48,256 copying funid/src/modeltest.py -> build/lib/funid/src 2023-02-07T10:32:48,258 copying funid/src/tree_interpretation_pipe.py -> build/lib/funid/src 2023-02-07T10:32:48,261 copying funid/src/tool.py -> build/lib/funid/src 2023-02-07T10:32:48,263 copying funid/src/patch.py -> build/lib/funid/src 2023-02-07T10:32:48,265 copying funid/src/ext.py -> build/lib/funid/src 2023-02-07T10:32:48,267 copying funid/src/logger.py -> build/lib/funid/src 2023-02-07T10:32:48,269 copying funid/src/validation.py -> build/lib/funid/src 2023-02-07T10:32:48,270 copying funid/src/tree_interpretation.py -> build/lib/funid/src 2023-02-07T10:32:48,274 creating build/lib/funid/data 2023-02-07T10:32:48,275 copying funid/data/__init__.py -> build/lib/funid/data 2023-02-07T10:32:48,277 running egg_info 2023-02-07T10:32:48,334 writing FunID.egg-info/PKG-INFO 2023-02-07T10:32:48,336 writing dependency_links to FunID.egg-info/dependency_links.txt 2023-02-07T10:32:48,338 writing entry points to FunID.egg-info/entry_points.txt 2023-02-07T10:32:48,339 writing requirements to FunID.egg-info/requires.txt 2023-02-07T10:32:48,340 writing top-level names to FunID.egg-info/top_level.txt 2023-02-07T10:32:48,374 reading manifest file 'FunID.egg-info/SOURCES.txt' 2023-02-07T10:32:48,404 adding license file 'LICENSE' 2023-02-07T10:32:48,412 writing manifest file 'FunID.egg-info/SOURCES.txt' 2023-02-07T10:32:48,426 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,426 !! 2023-02-07T10:32:48,427 ############################ 2023-02-07T10:32:48,427 # Package would be ignored # 2023-02-07T10:32:48,427 ############################ 2023-02-07T10:32:48,427 Python recognizes 'funid.external' as an importable package, 2023-02-07T10:32:48,427 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,427 'funid.external' has been automatically added to the distribution only 2023-02-07T10:32:48,428 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,428 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,428 Please make sure that 'funid.external' is included as a package by using 2023-02-07T10:32:48,428 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,428 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,428 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,428 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,429 documentation page. 2023-02-07T10:32:48,429 !! 2023-02-07T10:32:48,429 check.warn(importable) 2023-02-07T10:32:48,429 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,429 !! 2023-02-07T10:32:48,430 ############################ 2023-02-07T10:32:48,430 # Package would be ignored # 2023-02-07T10:32:48,430 ############################ 2023-02-07T10:32:48,430 Python recognizes 'funid.external.BLAST_Windows' as an importable package, 2023-02-07T10:32:48,430 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,431 'funid.external.BLAST_Windows' has been automatically added to the distribution only 2023-02-07T10:32:48,431 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,431 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,431 Please make sure that 'funid.external.BLAST_Windows' is included as a package by using 2023-02-07T10:32:48,431 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,431 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,431 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,432 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,432 documentation page. 2023-02-07T10:32:48,432 !! 2023-02-07T10:32:48,432 check.warn(importable) 2023-02-07T10:32:48,432 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.bin' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,433 !! 2023-02-07T10:32:48,433 ############################ 2023-02-07T10:32:48,433 # Package would be ignored # 2023-02-07T10:32:48,433 ############################ 2023-02-07T10:32:48,433 Python recognizes 'funid.external.BLAST_Windows.bin' as an importable package, 2023-02-07T10:32:48,433 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,434 'funid.external.BLAST_Windows.bin' has been automatically added to the distribution only 2023-02-07T10:32:48,434 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,434 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,434 Please make sure that 'funid.external.BLAST_Windows.bin' is included as a package by using 2023-02-07T10:32:48,434 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,434 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,435 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,435 documentation page. 2023-02-07T10:32:48,435 !! 2023-02-07T10:32:48,435 check.warn(importable) 2023-02-07T10:32:48,435 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.BLAST_Windows.doc' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,435 !! 2023-02-07T10:32:48,436 ############################ 2023-02-07T10:32:48,436 # Package would be ignored # 2023-02-07T10:32:48,436 ############################ 2023-02-07T10:32:48,436 Python recognizes 'funid.external.BLAST_Windows.doc' as an importable package, 2023-02-07T10:32:48,436 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,436 'funid.external.BLAST_Windows.doc' has been automatically added to the distribution only 2023-02-07T10:32:48,437 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,437 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,437 Please make sure that 'funid.external.BLAST_Windows.doc' is included as a package by using 2023-02-07T10:32:48,437 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,437 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,437 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,437 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,438 documentation page. 2023-02-07T10:32:48,438 !! 2023-02-07T10:32:48,438 check.warn(importable) 2023-02-07T10:32:48,438 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.FastTree_Windows' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,438 !! 2023-02-07T10:32:48,439 ############################ 2023-02-07T10:32:48,439 # Package would be ignored # 2023-02-07T10:32:48,439 ############################ 2023-02-07T10:32:48,439 Python recognizes 'funid.external.FastTree_Windows' as an importable package, 2023-02-07T10:32:48,439 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,439 'funid.external.FastTree_Windows' has been automatically added to the distribution only 2023-02-07T10:32:48,439 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,440 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,440 Please make sure that 'funid.external.FastTree_Windows' is included as a package by using 2023-02-07T10:32:48,440 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,440 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,440 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,441 documentation page. 2023-02-07T10:32:48,441 !! 2023-02-07T10:32:48,441 check.warn(importable) 2023-02-07T10:32:48,441 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.RAxML_Windows' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,441 !! 2023-02-07T10:32:48,442 ############################ 2023-02-07T10:32:48,442 # Package would be ignored # 2023-02-07T10:32:48,442 ############################ 2023-02-07T10:32:48,442 Python recognizes 'funid.external.RAxML_Windows' as an importable package, 2023-02-07T10:32:48,442 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,442 'funid.external.RAxML_Windows' has been automatically added to the distribution only 2023-02-07T10:32:48,442 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,443 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,443 Please make sure that 'funid.external.RAxML_Windows' is included as a package by using 2023-02-07T10:32:48,443 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,443 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,443 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,443 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,443 documentation page. 2023-02-07T10:32:48,444 !! 2023-02-07T10:32:48,444 check.warn(importable) 2023-02-07T10:32:48,444 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,444 !! 2023-02-07T10:32:48,445 ############################ 2023-02-07T10:32:48,445 # Package would be ignored # 2023-02-07T10:32:48,445 ############################ 2023-02-07T10:32:48,445 Python recognizes 'funid.external.mmseqs_Windows' as an importable package, 2023-02-07T10:32:48,445 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,445 'funid.external.mmseqs_Windows' has been automatically added to the distribution only 2023-02-07T10:32:48,445 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,445 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,446 Please make sure that 'funid.external.mmseqs_Windows' is included as a package by using 2023-02-07T10:32:48,446 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,446 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,446 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,446 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,446 documentation page. 2023-02-07T10:32:48,447 !! 2023-02-07T10:32:48,447 check.warn(importable) 2023-02-07T10:32:48,447 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.bin' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,447 !! 2023-02-07T10:32:48,447 ############################ 2023-02-07T10:32:48,448 # Package would be ignored # 2023-02-07T10:32:48,448 ############################ 2023-02-07T10:32:48,448 Python recognizes 'funid.external.mmseqs_Windows.bin' as an importable package, 2023-02-07T10:32:48,448 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,448 'funid.external.mmseqs_Windows.bin' has been automatically added to the distribution only 2023-02-07T10:32:48,448 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,448 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,449 Please make sure that 'funid.external.mmseqs_Windows.bin' is included as a package by using 2023-02-07T10:32:48,449 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,449 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,449 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,449 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,449 documentation page. 2023-02-07T10:32:48,450 !! 2023-02-07T10:32:48,450 check.warn(importable) 2023-02-07T10:32:48,450 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.examples' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,450 !! 2023-02-07T10:32:48,450 ############################ 2023-02-07T10:32:48,450 # Package would be ignored # 2023-02-07T10:32:48,451 ############################ 2023-02-07T10:32:48,451 Python recognizes 'funid.external.mmseqs_Windows.examples' as an importable package, 2023-02-07T10:32:48,451 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,451 'funid.external.mmseqs_Windows.examples' has been automatically added to the distribution only 2023-02-07T10:32:48,451 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,451 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,451 Please make sure that 'funid.external.mmseqs_Windows.examples' is included as a package by using 2023-02-07T10:32:48,452 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,452 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,452 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,452 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,453 documentation page. 2023-02-07T10:32:48,453 !! 2023-02-07T10:32:48,453 check.warn(importable) 2023-02-07T10:32:48,454 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.matrices' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,454 !! 2023-02-07T10:32:48,455 ############################ 2023-02-07T10:32:48,455 # Package would be ignored # 2023-02-07T10:32:48,455 ############################ 2023-02-07T10:32:48,455 Python recognizes 'funid.external.mmseqs_Windows.matrices' as an importable package, 2023-02-07T10:32:48,455 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,455 'funid.external.mmseqs_Windows.matrices' has been automatically added to the distribution only 2023-02-07T10:32:48,455 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,456 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,456 Please make sure that 'funid.external.mmseqs_Windows.matrices' is included as a package by using 2023-02-07T10:32:48,456 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,456 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,457 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,457 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,457 documentation page. 2023-02-07T10:32:48,458 !! 2023-02-07T10:32:48,458 check.warn(importable) 2023-02-07T10:32:48,458 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.external.mmseqs_Windows.util' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,459 !! 2023-02-07T10:32:48,459 ############################ 2023-02-07T10:32:48,459 # Package would be ignored # 2023-02-07T10:32:48,460 ############################ 2023-02-07T10:32:48,460 Python recognizes 'funid.external.mmseqs_Windows.util' as an importable package, 2023-02-07T10:32:48,460 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,461 'funid.external.mmseqs_Windows.util' has been automatically added to the distribution only 2023-02-07T10:32:48,461 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,461 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,462 Please make sure that 'funid.external.mmseqs_Windows.util' is included as a package by using 2023-02-07T10:32:48,462 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,462 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,462 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,463 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,463 documentation page. 2023-02-07T10:32:48,463 !! 2023-02-07T10:32:48,463 check.warn(importable) 2023-02-07T10:32:48,463 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,463 !! 2023-02-07T10:32:48,464 ############################ 2023-02-07T10:32:48,464 # Package would be ignored # 2023-02-07T10:32:48,464 ############################ 2023-02-07T10:32:48,464 Python recognizes 'funid.test_dataset.penicillium' as an importable package, 2023-02-07T10:32:48,464 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,464 'funid.test_dataset.penicillium' has been automatically added to the distribution only 2023-02-07T10:32:48,465 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,465 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,465 Please make sure that 'funid.test_dataset.penicillium' is included as a package by using 2023-02-07T10:32:48,465 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,465 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,466 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,466 documentation page. 2023-02-07T10:32:48,466 !! 2023-02-07T10:32:48,466 check.warn(importable) 2023-02-07T10:32:48,466 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.DB' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,466 !! 2023-02-07T10:32:48,467 ############################ 2023-02-07T10:32:48,467 # Package would be ignored # 2023-02-07T10:32:48,467 ############################ 2023-02-07T10:32:48,467 Python recognizes 'funid.test_dataset.penicillium.DB' as an importable package, 2023-02-07T10:32:48,467 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,467 'funid.test_dataset.penicillium.DB' has been automatically added to the distribution only 2023-02-07T10:32:48,468 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,468 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,468 Please make sure that 'funid.test_dataset.penicillium.DB' is included as a package by using 2023-02-07T10:32:48,468 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,468 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,468 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,468 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,469 documentation page. 2023-02-07T10:32:48,469 !! 2023-02-07T10:32:48,469 check.warn(importable) 2023-02-07T10:32:48,469 /usr/local/lib/python3.9/dist-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning: Installing 'funid.test_dataset.penicillium.Query' as data is deprecated, please list it in `packages`. 2023-02-07T10:32:48,469 !! 2023-02-07T10:32:48,470 ############################ 2023-02-07T10:32:48,470 # Package would be ignored # 2023-02-07T10:32:48,470 ############################ 2023-02-07T10:32:48,470 Python recognizes 'funid.test_dataset.penicillium.Query' as an importable package, 2023-02-07T10:32:48,470 but it is not listed in the `packages` configuration of setuptools. 2023-02-07T10:32:48,470 'funid.test_dataset.penicillium.Query' has been automatically added to the distribution only 2023-02-07T10:32:48,471 because it may contain data files, but this behavior is likely to change 2023-02-07T10:32:48,471 in future versions of setuptools (and therefore is considered deprecated). 2023-02-07T10:32:48,471 Please make sure that 'funid.test_dataset.penicillium.Query' is included as a package by using 2023-02-07T10:32:48,471 the `packages` configuration field or the proper discovery methods 2023-02-07T10:32:48,471 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2023-02-07T10:32:48,471 instead of `find_packages(...)`/`find:`). 2023-02-07T10:32:48,472 You can read more about "package discovery" and "data files" on setuptools 2023-02-07T10:32:48,472 documentation page. 2023-02-07T10:32:48,472 !! 2023-02-07T10:32:48,472 check.warn(importable) 2023-02-07T10:32:48,472 creating build/lib/funid/external 2023-02-07T10:32:48,472 copying funid/external/MAFFT_LICENSE -> build/lib/funid/external 2023-02-07T10:32:48,473 copying funid/external/MAFFT_Windows.zip -> build/lib/funid/external 2023-02-07T10:32:48,951 copying funid/external/__init__.py -> build/lib/funid/external 2023-02-07T10:32:48,953 creating build/lib/funid/external/BLAST_Windows 2023-02-07T10:32:48,954 copying funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/lib/funid/external/BLAST_Windows 2023-02-07T10:32:48,958 creating build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:48,958 copying funid/external/BLAST_Windows/bin/blastn.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,283 copying funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,285 copying funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,288 copying funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,292 copying funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,523 copying funid/external/BLAST_Windows/bin/nghttp2.dll -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,528 copying funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/lib/funid/external/BLAST_Windows/bin 2023-02-07T10:32:49,531 creating build/lib/funid/external/BLAST_Windows/doc 2023-02-07T10:32:49,532 copying funid/external/BLAST_Windows/doc/README.txt -> build/lib/funid/external/BLAST_Windows/doc 2023-02-07T10:32:49,534 creating build/lib/funid/external/FastTree_Windows 2023-02-07T10:32:49,534 copying funid/external/FastTree_Windows/FastTree.exe -> build/lib/funid/external/FastTree_Windows 2023-02-07T10:32:49,543 creating build/lib/funid/external/Gblocks_Windows_0.91b 2023-02-07T10:32:49,544 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:49,545 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:49,552 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:49,554 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:49,556 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-07T10:32:49,557 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-07T10:32:49,561 creating build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:49,561 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:49,564 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:49,567 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:49,569 copying funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:49,572 creating build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,572 copying funid/external/RAxML_Windows/GPL-3.0.txt -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,576 copying funid/external/RAxML_Windows/README -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,578 copying funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,609 copying funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,642 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,674 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,712 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,747 copying funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,785 copying funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,816 copying funid/external/RAxML_Windows/raxmlHPC.exe -> build/lib/funid/external/RAxML_Windows 2023-02-07T10:32:49,849 creating build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:49,850 copying funid/external/iqtree-2.1.3-Windows/example.cf -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:49,900 copying funid/external/iqtree-2.1.3-Windows/example.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:49,903 copying funid/external/iqtree-2.1.3-Windows/example.phy -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:49,907 copying funid/external/iqtree-2.1.3-Windows/models.nex -> build/lib/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:49,912 creating build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:49,913 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:50,122 copying funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:50,939 copying funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/lib/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:50,994 creating build/lib/funid/external/mmseqs_Windows 2023-02-07T10:32:50,995 copying funid/external/mmseqs_Windows/LICENSE.md -> build/lib/funid/external/mmseqs_Windows 2023-02-07T10:32:51,000 copying funid/external/mmseqs_Windows/README.md -> build/lib/funid/external/mmseqs_Windows 2023-02-07T10:32:51,004 copying funid/external/mmseqs_Windows/mmseqs.bat -> build/lib/funid/external/mmseqs_Windows 2023-02-07T10:32:51,006 copying funid/external/mmseqs_Windows/userguide.pdf -> build/lib/funid/external/mmseqs_Windows 2023-02-07T10:32:51,075 creating build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,076 copying funid/external/mmseqs_Windows/bin/busybox.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,091 copying funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,095 copying funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,099 copying funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,107 copying funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,146 copying funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,223 copying funid/external/mmseqs_Windows/bin/cygz.dll -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,228 copying funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/lib/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:51,485 creating build/lib/funid/external/mmseqs_Windows/examples 2023-02-07T10:32:51,486 copying funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/lib/funid/external/mmseqs_Windows/examples 2023-02-07T10:32:51,495 creating build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,496 copying funid/external/mmseqs_Windows/matrices/PAM10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,498 copying funid/external/mmseqs_Windows/matrices/PAM100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,500 copying funid/external/mmseqs_Windows/matrices/PAM110.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,502 copying funid/external/mmseqs_Windows/matrices/PAM120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,504 copying funid/external/mmseqs_Windows/matrices/PAM130.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,506 copying funid/external/mmseqs_Windows/matrices/PAM140.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,508 copying funid/external/mmseqs_Windows/matrices/PAM150.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,510 copying funid/external/mmseqs_Windows/matrices/PAM160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,512 copying funid/external/mmseqs_Windows/matrices/PAM170.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,514 copying funid/external/mmseqs_Windows/matrices/PAM180.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,516 copying funid/external/mmseqs_Windows/matrices/PAM190.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,518 copying funid/external/mmseqs_Windows/matrices/PAM20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,520 copying funid/external/mmseqs_Windows/matrices/PAM30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,522 copying funid/external/mmseqs_Windows/matrices/PAM40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,524 copying funid/external/mmseqs_Windows/matrices/PAM50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,526 copying funid/external/mmseqs_Windows/matrices/PAM60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,528 copying funid/external/mmseqs_Windows/matrices/PAM70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,530 copying funid/external/mmseqs_Windows/matrices/PAM80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,532 copying funid/external/mmseqs_Windows/matrices/PAM90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,534 copying funid/external/mmseqs_Windows/matrices/VTML10.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,536 copying funid/external/mmseqs_Windows/matrices/VTML120.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,538 copying funid/external/mmseqs_Windows/matrices/VTML160.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,540 copying funid/external/mmseqs_Windows/matrices/VTML20.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,542 copying funid/external/mmseqs_Windows/matrices/VTML40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,544 copying funid/external/mmseqs_Windows/matrices/VTML80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,547 copying funid/external/mmseqs_Windows/matrices/blosum100.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,549 copying funid/external/mmseqs_Windows/matrices/blosum30.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,551 copying funid/external/mmseqs_Windows/matrices/blosum35.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,553 copying funid/external/mmseqs_Windows/matrices/blosum40.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,555 copying funid/external/mmseqs_Windows/matrices/blosum45.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,557 copying funid/external/mmseqs_Windows/matrices/blosum50.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,559 copying funid/external/mmseqs_Windows/matrices/blosum55.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,561 copying funid/external/mmseqs_Windows/matrices/blosum60.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,563 copying funid/external/mmseqs_Windows/matrices/blosum62.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,565 copying funid/external/mmseqs_Windows/matrices/blosum65.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,567 copying funid/external/mmseqs_Windows/matrices/blosum70.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,569 copying funid/external/mmseqs_Windows/matrices/blosum75.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,571 copying funid/external/mmseqs_Windows/matrices/blosum80.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,573 copying funid/external/mmseqs_Windows/matrices/blosum85.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,575 copying funid/external/mmseqs_Windows/matrices/blosum90.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,577 copying funid/external/mmseqs_Windows/matrices/blosum95.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,579 copying funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/lib/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:51,581 creating build/lib/funid/external/mmseqs_Windows/util 2023-02-07T10:32:51,582 copying funid/external/mmseqs_Windows/util/bash-completion.sh -> build/lib/funid/external/mmseqs_Windows/util 2023-02-07T10:32:51,584 creating build/lib/funid/external/trimal.v1.2rev59 2023-02-07T10:32:51,584 creating build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:51,585 copying funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:51,587 copying funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:51,589 copying funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:51,592 copying funid/external/trimal.v1.2rev59/trimAl/README -> build/lib/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:51,594 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:51,595 copying funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:51,610 copying funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/lib/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:51,626 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,627 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,631 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,635 copying funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,638 copying funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,640 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,642 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,644 copying funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,646 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,648 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,650 copying funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,652 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,707 copying funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:51,740 creating build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,741 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,746 copying funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,748 copying funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,751 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,753 copying funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,756 copying funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,760 copying funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,762 copying funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,764 copying funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,768 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,770 copying funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,773 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,775 copying funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,777 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,780 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,782 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,784 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,786 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,789 copying funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,792 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,794 copying funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,797 copying funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/lib/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:51,799 copying funid/data/Option_manager.xlsx -> build/lib/funid/data 2023-02-07T10:32:51,802 copying funid/data/genus_line.txt -> build/lib/funid/data 2023-02-07T10:32:51,805 creating build/lib/funid/test_dataset 2023-02-07T10:32:51,806 creating build/lib/funid/test_dataset/penicillium 2023-02-07T10:32:51,807 copying funid/test_dataset/penicillium/Options.config -> build/lib/funid/test_dataset/penicillium 2023-02-07T10:32:51,809 copying funid/test_dataset/penicillium/preset.yaml -> build/lib/funid/test_dataset/penicillium 2023-02-07T10:32:51,811 creating build/lib/funid/test_dataset/penicillium/DB 2023-02-07T10:32:51,812 copying funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/lib/funid/test_dataset/penicillium/DB 2023-02-07T10:32:51,822 creating build/lib/funid/test_dataset/penicillium/Query 2023-02-07T10:32:51,823 copying funid/test_dataset/penicillium/Query/Query.xlsx -> build/lib/funid/test_dataset/penicillium/Query 2023-02-07T10:32:51,828 creating build/lib/funid/preset 2023-02-07T10:32:51,829 copying funid/preset/accurate.yaml -> build/lib/funid/preset 2023-02-07T10:32:51,832 copying funid/preset/fast.yaml -> build/lib/funid/preset 2023-02-07T10:32:51,865 /usr/local/lib/python3.9/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. 2023-02-07T10:32:51,866 warnings.warn( 2023-02-07T10:32:51,890 installing to build/bdist.linux-armv7l/wheel 2023-02-07T10:32:51,890 running install 2023-02-07T10:32:51,915 running install_lib 2023-02-07T10:32:51,951 creating build/bdist.linux-armv7l 2023-02-07T10:32:51,952 creating build/bdist.linux-armv7l/wheel 2023-02-07T10:32:51,953 creating build/bdist.linux-armv7l/wheel/funid 2023-02-07T10:32:51,954 copying build/lib/funid/__init__.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-07T10:32:51,956 creating build/bdist.linux-armv7l/wheel/funid/test_dataset 2023-02-07T10:32:51,958 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-07T10:32:51,959 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-02-07T10:32:51,960 copying build/lib/funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/DB 2023-02-07T10:32:51,970 creating build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-02-07T10:32:51,970 copying build/lib/funid/test_dataset/penicillium/Query/Query.xlsx -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium/Query 2023-02-07T10:32:51,976 copying build/lib/funid/test_dataset/penicillium/Options.config -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-07T10:32:51,978 copying build/lib/funid/test_dataset/penicillium/preset.yaml -> build/bdist.linux-armv7l/wheel/funid/test_dataset/penicillium 2023-02-07T10:32:51,980 creating build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,981 copying build/lib/funid/src/__init__.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,983 copying build/lib/funid/src/search.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,985 copying build/lib/funid/src/hasher.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,987 copying build/lib/funid/src/dataset.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,990 copying build/lib/funid/src/initialize.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,992 copying build/lib/funid/src/trim.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,994 copying build/lib/funid/src/multigene.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,996 copying build/lib/funid/src/manage_input.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:51,999 copying build/lib/funid/src/opt_generator.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,001 copying build/lib/funid/src/ncbi.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,003 copying build/lib/funid/src/save.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,005 copying build/lib/funid/src/cluster.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,008 copying build/lib/funid/src/logics.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,009 copying build/lib/funid/src/tree.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,012 copying build/lib/funid/src/reporter.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,015 copying build/lib/funid/src/validate_option.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,018 copying build/lib/funid/src/command.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,020 copying build/lib/funid/src/align.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,022 copying build/lib/funid/src/modeltest.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,025 copying build/lib/funid/src/tree_interpretation_pipe.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,027 copying build/lib/funid/src/tool.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,029 copying build/lib/funid/src/patch.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,031 copying build/lib/funid/src/ext.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,033 copying build/lib/funid/src/logger.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,035 copying build/lib/funid/src/validation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,037 copying build/lib/funid/src/tree_interpretation.py -> build/bdist.linux-armv7l/wheel/funid/src 2023-02-07T10:32:52,040 creating build/bdist.linux-armv7l/wheel/funid/preset 2023-02-07T10:32:52,041 copying build/lib/funid/preset/fast.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-02-07T10:32:52,043 copying build/lib/funid/preset/accurate.yaml -> build/bdist.linux-armv7l/wheel/funid/preset 2023-02-07T10:32:52,045 creating build/bdist.linux-armv7l/wheel/funid/external 2023-02-07T10:32:52,046 copying build/lib/funid/external/__init__.py -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-07T10:32:52,048 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-07T10:32:52,049 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-02-07T10:32:52,050 copying build/lib/funid/external/mmseqs_Windows/util/bash-completion.sh -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/util 2023-02-07T10:32:52,052 copying build/lib/funid/external/mmseqs_Windows/LICENSE.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-07T10:32:52,055 copying build/lib/funid/external/mmseqs_Windows/userguide.pdf -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-07T10:32:52,138 copying build/lib/funid/external/mmseqs_Windows/mmseqs.bat -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-07T10:32:52,140 copying build/lib/funid/external/mmseqs_Windows/README.md -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows 2023-02-07T10:32:52,144 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,144 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum45.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,146 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum75.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,148 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,150 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum62.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,152 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM150.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,153 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,155 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum65.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,157 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM130.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,159 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,160 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,163 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,164 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,166 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum55.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,168 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM70.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,170 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,172 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum90.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,173 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,175 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,177 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,179 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,181 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum95.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,183 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM10.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,205 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML120.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,207 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,209 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML20.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,211 copying build/lib/funid/external/mmseqs_Windows/matrices/VTML160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,213 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM140.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,239 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum30.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,241 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM190.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,243 copying build/lib/funid/external/mmseqs_Windows/matrices/nucleotide.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,245 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum35.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,247 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM180.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,248 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,250 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM100.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,252 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM160.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,254 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM170.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,255 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM110.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,257 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum40.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,259 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum85.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,261 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum50.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,263 copying build/lib/funid/external/mmseqs_Windows/matrices/PAM60.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,264 copying build/lib/funid/external/mmseqs_Windows/matrices/blosum80.out -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/matrices 2023-02-07T10:32:52,266 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-02-07T10:32:52,267 copying build/lib/funid/external/mmseqs_Windows/examples/QUERY.fasta -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/examples 2023-02-07T10:32:52,278 creating build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,278 copying build/lib/funid/external/mmseqs_Windows/bin/busybox.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,293 copying build/lib/funid/external/mmseqs_Windows/bin/cygbz2-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,296 copying build/lib/funid/external/mmseqs_Windows/bin/cygstdc++-6.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,339 copying build/lib/funid/external/mmseqs_Windows/bin/mmseqs.exe -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,612 copying build/lib/funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,616 copying build/lib/funid/external/mmseqs_Windows/bin/cygwin1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,686 copying build/lib/funid/external/mmseqs_Windows/bin/cygz.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,691 copying build/lib/funid/external/mmseqs_Windows/bin/cyggomp-1.dll -> build/bdist.linux-armv7l/wheel/funid/external/mmseqs_Windows/bin 2023-02-07T10:32:52,698 copying build/lib/funid/external/MAFFT_Windows.zip -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-07T10:32:53,259 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59 2023-02-07T10:32:53,280 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:53,282 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/CHANGELOG -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:53,284 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/AUTHORS -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:53,286 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/README -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:53,289 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,290 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment2.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,319 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,323 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,326 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,329 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset3 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,331 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,334 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.phy -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,336 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,337 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/superAlignment1.phy2 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,395 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/fileset1 -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,397 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,398 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/dataset 2023-02-07T10:32:53,400 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/LICENSE -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl 2023-02-07T10:32:53,403 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:53,404 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:53,420 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/bin 2023-02-07T10:32:53,435 creating build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,436 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,438 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,442 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/utils.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,444 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/autAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,446 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,448 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/rwAlignment.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,451 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,453 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/values.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,455 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,457 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/readAl.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,459 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,461 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/main.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,465 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,467 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,469 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/alignment.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,471 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,474 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/makefile -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,475 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsGaps.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,478 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/sequencesMatrix.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,480 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/statisticsConservation.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,481 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/similarityMatrix.cpp -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,484 copying build/lib/funid/external/trimal.v1.2rev59/trimAl/source/compareFiles.h -> build/bdist.linux-armv7l/wheel/funid/external/trimal.v1.2rev59/trimAl/source 2023-02-07T10:32:53,486 creating build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,487 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,523 copying build/lib/funid/external/RAxML_Windows/raxmlHPC.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,554 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,585 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,615 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,652 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,688 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-SSE3.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,719 copying build/lib/funid/external/RAxML_Windows/GPL-3.0.txt -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,722 copying build/lib/funid/external/RAxML_Windows/README -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,724 copying build/lib/funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe -> build/bdist.linux-armv7l/wheel/funid/external/RAxML_Windows 2023-02-07T10:32:53,772 creating build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-02-07T10:32:53,773 copying build/lib/funid/external/FastTree_Windows/FastTree.exe -> build/bdist.linux-armv7l/wheel/funid/external/FastTree_Windows 2023-02-07T10:32:53,783 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:53,783 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.phy -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:53,786 copying build/lib/funid/external/iqtree-2.1.3-Windows/models.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:53,791 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.cf -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:53,839 copying build/lib/funid/external/iqtree-2.1.3-Windows/example.nex -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows 2023-02-07T10:32:53,841 creating build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:53,842 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:54,046 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:54,349 copying build/lib/funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll -> build/bdist.linux-armv7l/wheel/funid/external/iqtree-2.1.3-Windows/bin 2023-02-07T10:32:54,372 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b 2023-02-07T10:32:54,374 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:54,375 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:54,376 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:54,379 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-07T10:32:54,379 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation 2023-02-07T10:32:54,383 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b 2023-02-07T10:32:54,392 creating build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:54,393 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:54,395 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:54,397 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:54,399 copying build/lib/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir -> build/bdist.linux-armv7l/wheel/funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments 2023-02-07T10:32:54,402 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-02-07T10:32:54,403 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-02-07T10:32:54,404 copying build/lib/funid/external/BLAST_Windows/doc/README.txt -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/doc 2023-02-07T10:32:54,406 copying build/lib/funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows 2023-02-07T10:32:54,410 creating build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,411 copying build/lib/funid/external/BLAST_Windows/bin/nghttp2.dll -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,416 copying build/lib/funid/external/BLAST_Windows/bin/makeblastdb.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,652 copying build/lib/funid/external/BLAST_Windows/bin/get_species_taxids.sh -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,654 copying build/lib/funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,657 copying build/lib/funid/external/BLAST_Windows/bin/blastn.exe -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,995 copying build/lib/funid/external/BLAST_Windows/bin/update_blastdb.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:54,998 copying build/lib/funid/external/BLAST_Windows/bin/legacy_blast.pl -> build/bdist.linux-armv7l/wheel/funid/external/BLAST_Windows/bin 2023-02-07T10:32:55,001 copying build/lib/funid/external/MAFFT_LICENSE -> build/bdist.linux-armv7l/wheel/funid/external 2023-02-07T10:32:55,004 creating build/bdist.linux-armv7l/wheel/funid/data 2023-02-07T10:32:55,005 copying build/lib/funid/data/__init__.py -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-07T10:32:55,006 copying build/lib/funid/data/genus_line.txt -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-07T10:32:55,009 copying build/lib/funid/data/Option_manager.xlsx -> build/bdist.linux-armv7l/wheel/funid/data 2023-02-07T10:32:55,012 copying build/lib/funid/FunID_GUI.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-07T10:32:55,015 copying build/lib/funid/main.py -> build/bdist.linux-armv7l/wheel/funid 2023-02-07T10:32:55,017 running install_egg_info 2023-02-07T10:32:55,054 Copying FunID.egg-info to build/bdist.linux-armv7l/wheel/FunID-0.3.2-py3.9.egg-info 2023-02-07T10:32:55,071 running install_scripts 2023-02-07T10:32:55,196 adding license file "LICENSE" (matched pattern "LICEN[CS]E*") 2023-02-07T10:32:55,202 creating build/bdist.linux-armv7l/wheel/FunID-0.3.2.dist-info/WHEEL 2023-02-07T10:32:55,204 creating '/tmp/pip-wheel-79qjn11l/FunID-0.3.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2023-02-07T10:32:55,209 adding 'funid/FunID_GUI.py' 2023-02-07T10:32:55,210 adding 'funid/__init__.py' 2023-02-07T10:32:55,212 adding 'funid/main.py' 2023-02-07T10:32:55,215 adding 'funid/data/Option_manager.xlsx' 2023-02-07T10:32:55,217 adding 'funid/data/__init__.py' 2023-02-07T10:32:55,224 adding 'funid/data/genus_line.txt' 2023-02-07T10:32:55,231 adding 'funid/external/MAFFT_LICENSE' 2023-02-07T10:32:58,362 adding 'funid/external/MAFFT_Windows.zip' 2023-02-07T10:32:58,531 adding 'funid/external/__init__.py' 2023-02-07T10:32:58,540 adding 'funid/external/BLAST_Windows/Uninstall-ncbi-blast-2.12.0+.exe' 2023-02-07T10:33:01,531 adding 'funid/external/BLAST_Windows/bin/blastn.exe' 2023-02-07T10:33:01,637 adding 'funid/external/BLAST_Windows/bin/cleanup-blastdb-volumes.py' 2023-02-07T10:33:01,639 adding 'funid/external/BLAST_Windows/bin/get_species_taxids.sh' 2023-02-07T10:33:01,643 adding 'funid/external/BLAST_Windows/bin/legacy_blast.pl' 2023-02-07T10:33:03,720 adding 'funid/external/BLAST_Windows/bin/makeblastdb.exe' 2023-02-07T10:33:03,821 adding 'funid/external/BLAST_Windows/bin/nghttp2.dll' 2023-02-07T10:33:03,825 adding 'funid/external/BLAST_Windows/bin/update_blastdb.pl' 2023-02-07T10:33:03,827 adding 'funid/external/BLAST_Windows/doc/README.txt' 2023-02-07T10:33:03,885 adding 'funid/external/FastTree_Windows/FastTree.exe' 2023-02-07T10:33:03,926 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Gblocks.exe' 2023-02-07T10:33:03,929 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/nad3.pir' 2023-02-07T10:33:03,930 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/paths' 2023-02-07T10:33:03,935 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/Documentation/Gblocks_documentation.html' 2023-02-07T10:33:03,938 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cox2.pir' 2023-02-07T10:33:03,940 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/cytb.pir' 2023-02-07T10:33:03,941 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad3.pir' 2023-02-07T10:33:03,944 adding 'funid/external/Gblocks_Windows_0.91b/Gblocks_0.91b/more_alignments/nad5.pir' 2023-02-07T10:33:03,951 adding 'funid/external/RAxML_Windows/GPL-3.0.txt' 2023-02-07T10:33:03,952 adding 'funid/external/RAxML_Windows/README' 2023-02-07T10:33:04,218 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX.exe' 2023-02-07T10:33:04,489 adding 'funid/external/RAxML_Windows/raxmlHPC-AVX2.exe' 2023-02-07T10:33:04,792 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX.exe' 2023-02-07T10:33:05,099 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-AVX2.exe' 2023-02-07T10:33:05,409 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS-SSE3.exe' 2023-02-07T10:33:05,709 adding 'funid/external/RAxML_Windows/raxmlHPC-PTHREADS.exe' 2023-02-07T10:33:05,988 adding 'funid/external/RAxML_Windows/raxmlHPC-SSE3.exe' 2023-02-07T10:33:06,258 adding 'funid/external/RAxML_Windows/raxmlHPC.exe' 2023-02-07T10:33:06,351 adding 'funid/external/iqtree-2.1.3-Windows/example.cf' 2023-02-07T10:33:06,430 adding 'funid/external/iqtree-2.1.3-Windows/example.nex' 2023-02-07T10:33:06,532 adding 'funid/external/iqtree-2.1.3-Windows/example.phy' 2023-02-07T10:33:06,668 adding 'funid/external/iqtree-2.1.3-Windows/models.nex' 2023-02-07T10:33:08,487 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2-click.exe' 2023-02-07T10:33:10,309 adding 'funid/external/iqtree-2.1.3-Windows/bin/iqtree2.exe' 2023-02-07T10:33:10,713 adding 'funid/external/iqtree-2.1.3-Windows/bin/libiomp5md.dll' 2023-02-07T10:33:10,726 adding 'funid/external/mmseqs_Windows/LICENSE.md' 2023-02-07T10:33:10,729 adding 'funid/external/mmseqs_Windows/README.md' 2023-02-07T10:33:10,730 adding 'funid/external/mmseqs_Windows/mmseqs.bat' 2023-02-07T10:33:11,257 adding 'funid/external/mmseqs_Windows/userguide.pdf' 2023-02-07T10:33:11,576 adding 'funid/external/mmseqs_Windows/bin/busybox.exe' 2023-02-07T10:33:11,591 adding 'funid/external/mmseqs_Windows/bin/cygbz2-1.dll' 2023-02-07T10:33:11,604 adding 'funid/external/mmseqs_Windows/bin/cyggcc_s-seh-1.dll' 2023-02-07T10:33:11,647 adding 'funid/external/mmseqs_Windows/bin/cyggomp-1.dll' 2023-02-07T10:33:11,939 adding 'funid/external/mmseqs_Windows/bin/cygstdc++-6.dll' 2023-02-07T10:33:12,551 adding 'funid/external/mmseqs_Windows/bin/cygwin1.dll' 2023-02-07T10:33:12,588 adding 'funid/external/mmseqs_Windows/bin/cygz.dll' 2023-02-07T10:33:16,319 adding 'funid/external/mmseqs_Windows/bin/mmseqs.exe' 2023-02-07T10:33:16,443 adding 'funid/external/mmseqs_Windows/examples/QUERY.fasta' 2023-02-07T10:33:16,448 adding 'funid/external/mmseqs_Windows/matrices/PAM10.out' 2023-02-07T10:33:16,449 adding 'funid/external/mmseqs_Windows/matrices/PAM100.out' 2023-02-07T10:33:16,450 adding 'funid/external/mmseqs_Windows/matrices/PAM110.out' 2023-02-07T10:33:16,452 adding 'funid/external/mmseqs_Windows/matrices/PAM120.out' 2023-02-07T10:33:16,453 adding 'funid/external/mmseqs_Windows/matrices/PAM130.out' 2023-02-07T10:33:16,454 adding 'funid/external/mmseqs_Windows/matrices/PAM140.out' 2023-02-07T10:33:16,455 adding 'funid/external/mmseqs_Windows/matrices/PAM150.out' 2023-02-07T10:33:16,457 adding 'funid/external/mmseqs_Windows/matrices/PAM160.out' 2023-02-07T10:33:16,458 adding 'funid/external/mmseqs_Windows/matrices/PAM170.out' 2023-02-07T10:33:16,459 adding 'funid/external/mmseqs_Windows/matrices/PAM180.out' 2023-02-07T10:33:16,460 adding 'funid/external/mmseqs_Windows/matrices/PAM190.out' 2023-02-07T10:33:16,461 adding 'funid/external/mmseqs_Windows/matrices/PAM20.out' 2023-02-07T10:33:16,463 adding 'funid/external/mmseqs_Windows/matrices/PAM30.out' 2023-02-07T10:33:16,464 adding 'funid/external/mmseqs_Windows/matrices/PAM40.out' 2023-02-07T10:33:16,465 adding 'funid/external/mmseqs_Windows/matrices/PAM50.out' 2023-02-07T10:33:16,467 adding 'funid/external/mmseqs_Windows/matrices/PAM60.out' 2023-02-07T10:33:16,468 adding 'funid/external/mmseqs_Windows/matrices/PAM70.out' 2023-02-07T10:33:16,469 adding 'funid/external/mmseqs_Windows/matrices/PAM80.out' 2023-02-07T10:33:16,470 adding 'funid/external/mmseqs_Windows/matrices/PAM90.out' 2023-02-07T10:33:16,472 adding 'funid/external/mmseqs_Windows/matrices/VTML10.out' 2023-02-07T10:33:16,473 adding 'funid/external/mmseqs_Windows/matrices/VTML120.out' 2023-02-07T10:33:16,474 adding 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'funid/external/trimal.v1.2rev59/trimAl/CHANGELOG' 2023-02-07T10:33:16,514 adding 'funid/external/trimal.v1.2rev59/trimAl/LICENSE' 2023-02-07T10:33:16,515 adding 'funid/external/trimal.v1.2rev59/trimAl/README' 2023-02-07T10:33:16,603 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/readal.exe' 2023-02-07T10:33:16,697 adding 'funid/external/trimal.v1.2rev59/trimAl/bin/trimal.exe' 2023-02-07T10:33:16,709 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.clw' 2023-02-07T10:33:16,716 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.msl' 2023-02-07T10:33:16,722 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/YKL197C.phy2' 2023-02-07T10:33:16,723 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/blosum62.mat' 2023-02-07T10:33:16,724 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/example1.clw' 2023-02-07T10:33:16,725 adding 'funid/external/trimal.v1.2rev59/trimAl/dataset/example1.msl' 2023-02-07T10:33:16,727 adding 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'funid/src/dataset.py' 2023-02-07T10:33:17,178 adding 'funid/src/ext.py' 2023-02-07T10:33:17,180 adding 'funid/src/hasher.py' 2023-02-07T10:33:17,181 adding 'funid/src/initialize.py' 2023-02-07T10:33:17,182 adding 'funid/src/logger.py' 2023-02-07T10:33:17,184 adding 'funid/src/logics.py' 2023-02-07T10:33:17,187 adding 'funid/src/manage_input.py' 2023-02-07T10:33:17,189 adding 'funid/src/modeltest.py' 2023-02-07T10:33:17,190 adding 'funid/src/multigene.py' 2023-02-07T10:33:17,192 adding 'funid/src/ncbi.py' 2023-02-07T10:33:17,193 adding 'funid/src/opt_generator.py' 2023-02-07T10:33:17,195 adding 'funid/src/patch.py' 2023-02-07T10:33:17,198 adding 'funid/src/reporter.py' 2023-02-07T10:33:17,200 adding 'funid/src/save.py' 2023-02-07T10:33:17,202 adding 'funid/src/search.py' 2023-02-07T10:33:17,204 adding 'funid/src/tool.py' 2023-02-07T10:33:17,205 adding 'funid/src/tree.py' 2023-02-07T10:33:17,210 adding 'funid/src/tree_interpretation.py' 2023-02-07T10:33:17,212 adding 'funid/src/tree_interpretation_pipe.py' 2023-02-07T10:33:17,213 adding 'funid/src/trim.py' 2023-02-07T10:33:17,218 adding 'funid/src/validate_option.py' 2023-02-07T10:33:17,220 adding 'funid/src/validation.py' 2023-02-07T10:33:17,222 adding 'funid/test_dataset/penicillium/Options.config' 2023-02-07T10:33:17,223 adding 'funid/test_dataset/penicillium/preset.yaml' 2023-02-07T10:33:17,262 adding 'funid/test_dataset/penicillium/DB/DB_Penicillium.xlsx' 2023-02-07T10:33:17,280 adding 'funid/test_dataset/penicillium/Query/Query.xlsx' 2023-02-07T10:33:17,287 adding 'FunID-0.3.2.dist-info/LICENSE' 2023-02-07T10:33:17,288 adding 'FunID-0.3.2.dist-info/METADATA' 2023-02-07T10:33:17,289 adding 'FunID-0.3.2.dist-info/WHEEL' 2023-02-07T10:33:17,290 adding 'FunID-0.3.2.dist-info/entry_points.txt' 2023-02-07T10:33:17,291 adding 'FunID-0.3.2.dist-info/top_level.txt' 2023-02-07T10:33:17,294 adding 'FunID-0.3.2.dist-info/RECORD' 2023-02-07T10:33:17,403 removing build/bdist.linux-armv7l/wheel 2023-02-07T10:33:17,645 Building wheel for funid (setup.py): finished with status 'done' 2023-02-07T10:33:19,099 Created wheel for funid: filename=FunID-0.3.2-py3-none-any.whl size=65427547 sha256=d0714cd7cd6b2c16ae6dc7120ae5ede922e049fab52e6d1a2a24c6e7075360be 2023-02-07T10:33:19,100 Stored in directory: /tmp/pip-ephem-wheel-cache-j24ib0zh/wheels/34/93/2b/3f5297e978222a3e12684e6adce2d2417680cfee6f22ab1e59 2023-02-07T10:33:19,149 Successfully built funid 2023-02-07T10:33:21,007 Removed build tracker: '/tmp/pip-build-tracker-3l49qzvs'