2023-02-07T20:00:55,450 Created temporary directory: /tmp/pip-ephem-wheel-cache-vapnqvsu 2023-02-07T20:00:55,452 Created temporary directory: /tmp/pip-build-tracker-sz3fsdkk 2023-02-07T20:00:55,452 Initialized build tracking at /tmp/pip-build-tracker-sz3fsdkk 2023-02-07T20:00:55,452 Created build tracker: /tmp/pip-build-tracker-sz3fsdkk 2023-02-07T20:00:55,452 Entered build tracker: /tmp/pip-build-tracker-sz3fsdkk 2023-02-07T20:00:55,453 Created temporary directory: /tmp/pip-wheel-8j999_5q 2023-02-07T20:00:55,456 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2023-02-07T20:00:55,458 Created temporary directory: /tmp/pip-ephem-wheel-cache-b74ehyfd 2023-02-07T20:00:55,482 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2023-02-07T20:00:55,485 2 location(s) to search for versions of biolink-model: 2023-02-07T20:00:55,485 * https://pypi.org/simple/biolink-model/ 2023-02-07T20:00:55,485 * https://www.piwheels.org/simple/biolink-model/ 2023-02-07T20:00:55,485 Fetching project page and analyzing links: https://pypi.org/simple/biolink-model/ 2023-02-07T20:00:55,486 Getting page https://pypi.org/simple/biolink-model/ 2023-02-07T20:00:55,487 Found index url https://pypi.org/simple 2023-02-07T20:00:55,541 Fetched page https://pypi.org/simple/biolink-model/ as application/vnd.pypi.simple.v1+json 2023-02-07T20:00:55,551 Skipping link: No binaries permitted for biolink-model: 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https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,574 Found link https://files.pythonhosted.org/packages/3d/c6/c039d2c2749bf2f45a0e15c5c7446c84077210527270a35612d20c86c063/biolink-model-3.1.1.tar.gz (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 3.1.1 2023-02-07T20:00:55,574 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/bf/4c/96cdc2767dbbe7880c2bcad50acab54d9672e1d9a05f9ca81fe7d76fcae8/biolink_model-3.1.1-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,574 Found link https://files.pythonhosted.org/packages/8b/40/a29611c683ac0baa63ca5b0b799df6479f3e437689d7882542bbc05e374a/biolink-model-3.1.2.tar.gz (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 3.1.2 2023-02-07T20:00:55,575 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/ad/7d/a1f20dc6487a3b7cf62c750d031c80b23de26d28a3dcd502e6bc5a8bd435/biolink_model-3.1.2-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,575 Found link https://files.pythonhosted.org/packages/ce/3d/154aaa163a5ece0a13f1148433b3f0e63028719f4a25f8d9773103f36f73/biolink-model-3.2.0.tar.gz (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7), version: 3.2.0 2023-02-07T20:00:55,575 Skipping link: No binaries permitted for biolink-model: https://files.pythonhosted.org/packages/4a/9d/6f0db7b65ee3ad0cb2924790b1e13ef313ddb711dfc6b5682718d1a9b888/biolink_model-3.2.0-py3-none-any.whl (from https://pypi.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,576 Fetching project page and analyzing links: https://www.piwheels.org/simple/biolink-model/ 2023-02-07T20:00:55,576 Getting page https://www.piwheels.org/simple/biolink-model/ 2023-02-07T20:00:55,577 Found index url https://www.piwheels.org/simple 2023-02-07T20:00:55,771 Fetched page https://www.piwheels.org/simple/biolink-model/ as text/html 2023-02-07T20:00:55,773 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.5-py3-none-any.whl#sha256=d4fb26095d715bd9abea9e36b3a3c14299c2de72b3c2333e8dc4b91248af2fb7 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,773 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.4-py3-none-any.whl#sha256=903f752ed3430dbab76022e2c69176550e267eb9c55ac4cb39b98d9b270609d0 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,774 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.3-py3-none-any.whl#sha256=882f1d08c2a5605c40c0ae3368dcc1acbf5349c9f9aff243c999f6fa575a1e52 (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,774 Skipping link: No binaries permitted for biolink-model: https://www.piwheels.org/simple/biolink-model/biolink_model-1.2.2-py3-none-any.whl#sha256=460f615978ea5b78c1736ba23bc4c05f92a8125034eed571f83a57f1fc06f8fd (from https://www.piwheels.org/simple/biolink-model/) (requires-python:>=3.7) 2023-02-07T20:00:55,774 Skipping link: not a file: https://www.piwheels.org/simple/biolink-model/ 2023-02-07T20:00:55,774 Skipping link: not a file: https://pypi.org/simple/biolink-model/ 2023-02-07T20:00:55,796 Given no hashes to check 1 links for project 'biolink-model': discarding no candidates 2023-02-07T20:00:55,814 Collecting biolink-model==3.2.0 2023-02-07T20:00:55,816 Created temporary directory: /tmp/pip-unpack-tcyd8zt6 2023-02-07T20:00:55,875 Downloading biolink-model-3.2.0.tar.gz (110 kB) 2023-02-07T20:00:55,983 Added biolink-model==3.2.0 from https://files.pythonhosted.org/packages/ce/3d/154aaa163a5ece0a13f1148433b3f0e63028719f4a25f8d9773103f36f73/biolink-model-3.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-sz3fsdkk' 2023-02-07T20:00:55,985 Running setup.py (path:/tmp/pip-wheel-8j999_5q/biolink-model_8d0f12ce870c4308b441c31a7cd82dde/setup.py) egg_info for package biolink-model 2023-02-07T20:00:55,985 Created temporary directory: /tmp/pip-pip-egg-info-92wtz8kz 2023-02-07T20:00:55,986 Preparing metadata (setup.py): started 2023-02-07T20:00:55,987 Running command python setup.py egg_info 2023-02-07T20:00:56,868 Traceback (most recent call last): 2023-02-07T20:00:56,869 File "", line 2, in 2023-02-07T20:00:56,869 File "", line 34, in 2023-02-07T20:00:56,869 File "/tmp/pip-wheel-8j999_5q/biolink-model_8d0f12ce870c4308b441c31a7cd82dde/setup.py", line 5, in 2023-02-07T20:00:56,869 with open("requirements.txt", "r") as FH: 2023-02-07T20:00:56,870 FileNotFoundError: [Errno 2] No such file or directory: 'requirements.txt' 2023-02-07T20:00:56,950 ERROR: [present-rich] python setup.py egg_info exited with 1 2023-02-07T20:00:56,968 [bold magenta]full command[/]: [blue]/usr/bin/python3 -c ' 2023-02-07T20:00:56,968 exec(compile('"'"''"'"''"'"' 2023-02-07T20:00:56,968 # This is -- a caller that pip uses to run setup.py 2023-02-07T20:00:56,968 # 2023-02-07T20:00:56,968 # - It imports setuptools before invoking setup.py, to enable projects that directly 2023-02-07T20:00:56,968 # import from `distutils.core` to work with newer packaging standards. 2023-02-07T20:00:56,968 # - It provides a clear error message when setuptools is not installed. 2023-02-07T20:00:56,968 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2023-02-07T20:00:56,968 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2023-02-07T20:00:56,968 # manifest_maker: standard file '"'"'-c'"'"' not found". 2023-02-07T20:00:56,968 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2023-02-07T20:00:56,968 import os, sys, tokenize 2023-02-07T20:00:56,968 2023-02-07T20:00:56,968 try: 2023-02-07T20:00:56,968 import setuptools 2023-02-07T20:00:56,968 except ImportError as error: 2023-02-07T20:00:56,968 print( 2023-02-07T20:00:56,968 "ERROR: Can not execute `setup.py` since setuptools is not available in " 2023-02-07T20:00:56,968 "the build environment.", 2023-02-07T20:00:56,968 file=sys.stderr, 2023-02-07T20:00:56,968 ) 2023-02-07T20:00:56,968 sys.exit(1) 2023-02-07T20:00:56,968 2023-02-07T20:00:56,968 __file__ = %r 2023-02-07T20:00:56,968 sys.argv[0] = __file__ 2023-02-07T20:00:56,968 2023-02-07T20:00:56,968 if os.path.exists(__file__): 2023-02-07T20:00:56,968 filename = __file__ 2023-02-07T20:00:56,968 with tokenize.open(__file__) as f: 2023-02-07T20:00:56,968 setup_py_code = f.read() 2023-02-07T20:00:56,968 else: 2023-02-07T20:00:56,968 filename = "" 2023-02-07T20:00:56,968 setup_py_code = "from setuptools import setup; setup()" 2023-02-07T20:00:56,968 2023-02-07T20:00:56,968 exec(compile(setup_py_code, filename, "exec")) 2023-02-07T20:00:56,968 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-8j999_5q/biolink-model_8d0f12ce870c4308b441c31a7cd82dde/setup.py'"'"',), "", "exec"))' egg_info --egg-base /tmp/pip-pip-egg-info-92wtz8kz[/] 2023-02-07T20:00:56,968 [bold magenta]cwd[/]: /tmp/pip-wheel-8j999_5q/biolink-model_8d0f12ce870c4308b441c31a7cd82dde/ 2023-02-07T20:00:56,968 Preparing metadata (setup.py): finished with status 'error' 2023-02-07T20:00:56,969 ERROR: [present-rich] metadata generation failed 2023-02-07T20:00:56,975 Exception information: 2023-02-07T20:00:56,975 Traceback (most recent call last): 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 64, in generate_metadata 2023-02-07T20:00:56,975 call_subprocess( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/utils/subprocess.py", line 224, in call_subprocess 2023-02-07T20:00:56,975 raise error 2023-02-07T20:00:56,975 pip._internal.exceptions.InstallationSubprocessError: python setup.py egg_info exited with 1 2023-02-07T20:00:56,975 2023-02-07T20:00:56,975 The above exception was the direct cause of the following exception: 2023-02-07T20:00:56,975 2023-02-07T20:00:56,975 Traceback (most recent call last): 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2023-02-07T20:00:56,975 status = run_func(*args) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2023-02-07T20:00:56,975 return func(self, options, args) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/commands/wheel.py", line 170, in run 2023-02-07T20:00:56,975 requirement_set = resolver.resolve(reqs, check_supported_wheels=True) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/resolver.py", line 92, in resolve 2023-02-07T20:00:56,975 result = self._result = resolver.resolve( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 481, in resolve 2023-02-07T20:00:56,975 state = resolution.resolve(requirements, max_rounds=max_rounds) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 348, in resolve 2023-02-07T20:00:56,975 self._add_to_criteria(self.state.criteria, r, parent=None) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/resolvers.py", line 172, in _add_to_criteria 2023-02-07T20:00:56,975 if not criterion.candidates: 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_vendor/resolvelib/structs.py", line 151, in __bool__ 2023-02-07T20:00:56,975 return bool(self._sequence) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 155, in __bool__ 2023-02-07T20:00:56,975 return any(self) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 143, in 2023-02-07T20:00:56,975 return (c for c in iterator if id(c) not in self._incompatible_ids) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/found_candidates.py", line 47, in _iter_built 2023-02-07T20:00:56,975 candidate = func() 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/factory.py", line 206, in _make_candidate_from_link 2023-02-07T20:00:56,975 self._link_candidate_cache[link] = LinkCandidate( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 297, in __init__ 2023-02-07T20:00:56,975 super().__init__( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 162, in __init__ 2023-02-07T20:00:56,975 self.dist = self._prepare() 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 231, in _prepare 2023-02-07T20:00:56,975 dist = self._prepare_distribution() 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/resolution/resolvelib/candidates.py", line 308, in _prepare_distribution 2023-02-07T20:00:56,975 return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 491, in prepare_linked_requirement 2023-02-07T20:00:56,975 return self._prepare_linked_requirement(req, parallel_builds) 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 577, in _prepare_linked_requirement 2023-02-07T20:00:56,975 dist = _get_prepared_distribution( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/prepare.py", line 69, in _get_prepared_distribution 2023-02-07T20:00:56,975 abstract_dist.prepare_distribution_metadata( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/distributions/sdist.py", line 61, in prepare_distribution_metadata 2023-02-07T20:00:56,975 self.req.prepare_metadata() 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/req/req_install.py", line 541, in prepare_metadata 2023-02-07T20:00:56,975 self.metadata_directory = generate_metadata_legacy( 2023-02-07T20:00:56,975 File "/usr/local/lib/python3.9/dist-packages/pip/_internal/operations/build/metadata_legacy.py", line 71, in generate_metadata 2023-02-07T20:00:56,975 raise MetadataGenerationFailed(package_details=details) from error 2023-02-07T20:00:56,975 pip._internal.exceptions.MetadataGenerationFailed: metadata generation failed 2023-02-07T20:00:56,986 Removed biolink-model==3.2.0 from https://files.pythonhosted.org/packages/ce/3d/154aaa163a5ece0a13f1148433b3f0e63028719f4a25f8d9773103f36f73/biolink-model-3.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-sz3fsdkk' 2023-02-07T20:00:56,986 Removed build tracker: '/tmp/pip-build-tracker-sz3fsdkk'