2023-02-08T14:06:32,353 Created temporary directory: /tmp/pip-ephem-wheel-cache-uvv_gcoz
2023-02-08T14:06:32,358 Created temporary directory: /tmp/pip-build-tracker-qm10f4n3
2023-02-08T14:06:32,358 Initialized build tracking at /tmp/pip-build-tracker-qm10f4n3
2023-02-08T14:06:32,359 Created build tracker: /tmp/pip-build-tracker-qm10f4n3
2023-02-08T14:06:32,359 Entered build tracker: /tmp/pip-build-tracker-qm10f4n3
2023-02-08T14:06:32,360 Created temporary directory: /tmp/pip-wheel-kyltfgil
2023-02-08T14:06:32,369 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-08T14:06:32,374 Created temporary directory: /tmp/pip-ephem-wheel-cache-mlfg80gt
2023-02-08T14:06:32,425 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-08T14:06:32,433 2 location(s) to search for versions of galaxy-tool-util:
2023-02-08T14:06:32,433 * https://pypi.org/simple/galaxy-tool-util/
2023-02-08T14:06:32,433 * https://www.piwheels.org/simple/galaxy-tool-util/
2023-02-08T14:06:32,435 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-tool-util/
2023-02-08T14:06:32,436 Getting page https://pypi.org/simple/galaxy-tool-util/
2023-02-08T14:06:32,439 Found index url https://pypi.org/simple
2023-02-08T14:06:32,629 Fetched page https://pypi.org/simple/galaxy-tool-util/ as application/vnd.pypi.simple.v1+json
2023-02-08T14:06:32,672   Found link https://files.pythonhosted.org/packages/68/b2/9b2647b039cb24bd33bcc14601d153b38793115c044e8e07c3e1b87ccda4/galaxy-tool-util-19.9.0.dev0.tar.gz (from https://pypi.org/simple/galaxy-tool-util/), version: 19.9.0.dev0
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2023-02-08T14:06:32,726   Found link https://files.pythonhosted.org/packages/fe/43/e0e03a86a2b9359960996139cb78f734d838ba63bdf8c60657cd4f3fed69/galaxy-tool-util-22.5.0.dev0.tar.gz (from https://pypi.org/simple/galaxy-tool-util/) (requires-python:>=3.7), version: 22.5.0.dev0
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2023-02-08T14:06:33,012   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev4-py2.py3-none-any.whl#sha256=1d8a6bb9e6104db4ea1cd468ccbf6a1d4e27c8b7c8e5a70c1ab09fed151c69b4 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2023-02-08T14:06:33,012   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev3-py2.py3-none-any.whl#sha256=4f37bcc38772266c1fe9eb830150eb8ab4ed7d027d3cd36c7615329c288f19e2 (from https://www.piwheels.org/simple/galaxy-tool-util/)
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2023-02-08T14:06:33,014   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev0-py2.py3-none-any.whl#sha256=f5d584c26cda61bce66239bcfe6b148ed1752585ebebdcf03cb423a252899e11 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2023-02-08T14:06:33,014   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.1-py2.py3-none-any.whl#sha256=d2026a5c374a2206158eb34518473e14ded7c8a7f80d35c743ad31e75c5552bb (from https://www.piwheels.org/simple/galaxy-tool-util/)
2023-02-08T14:06:33,015   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0-py2.py3-none-any.whl#sha256=b9ae70a1744abff6164cab3304cf279e8683944b8cf2d95c26f6df7dfe9eb4c5 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2023-02-08T14:06:33,015   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev5-py2.py3-none-any.whl#sha256=f869574a225f69e7b51f6dba165eec4a58fe6c76d45924aecd9cc44e6513ad77 (from https://www.piwheels.org/simple/galaxy-tool-util/)
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2023-02-08T14:06:33,018   Skipping link: No binaries permitted for galaxy-tool-util: https://www.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/)
2023-02-08T14:06:33,019 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/
2023-02-08T14:06:33,019 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/
2023-02-08T14:06:33,070 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates
2023-02-08T14:06:33,101 Collecting galaxy-tool-util==22.5.0.dev2
2023-02-08T14:06:33,106   Created temporary directory: /tmp/pip-unpack-qcp62l0l
2023-02-08T14:06:33,367   Downloading galaxy-tool-util-22.5.0.dev2.tar.gz (302 kB)
2023-02-08T14:06:34,230   Added galaxy-tool-util==22.5.0.dev2 from https://files.pythonhosted.org/packages/3d/15/7f75540539ee669bff212479f141f6fed8d55d6818352e6bfa4cfc348f10/galaxy-tool-util-22.5.0.dev2.tar.gz to build tracker '/tmp/pip-build-tracker-qm10f4n3'
2023-02-08T14:06:34,236   Created temporary directory: /tmp/pip-build-env-4q7c0vs_
2023-02-08T14:06:34,247   Installing build dependencies: started
2023-02-08T14:06:34,250   Running command pip subprocess to install build dependencies
2023-02-08T14:06:36,966   Using pip 23.0 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-02-08T14:06:37,765   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-08T14:06:37,819   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-08T14:06:41,670   Collecting setuptools
2023-02-08T14:06:41,905     Using cached https://www.piwheels.org/simple/setuptools/setuptools-67.2.0-py3-none-any.whl (1.1 MB)
2023-02-08T14:06:47,623   Installing collected packages: setuptools
2023-02-08T14:06:51,796   Successfully installed setuptools-67.2.0
2023-02-08T14:06:52,236   Installing build dependencies: finished with status 'done'
2023-02-08T14:06:52,246   Getting requirements to build wheel: started
2023-02-08T14:06:52,248   Running command Getting requirements to build wheel
2023-02-08T14:06:53,948   running egg_info
2023-02-08T14:06:53,959   writing galaxy_tool_util.egg-info/PKG-INFO
2023-02-08T14:06:53,963   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2023-02-08T14:06:53,969   writing entry points to galaxy_tool_util.egg-info/entry_points.txt
2023-02-08T14:06:53,974   writing requirements to galaxy_tool_util.egg-info/requires.txt
2023-02-08T14:06:53,976   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2023-02-08T14:06:54,051   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:06:54,065   reading manifest template 'MANIFEST.in'
2023-02-08T14:06:54,077   adding license file 'LICENSE'
2023-02-08T14:06:54,100   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:06:54,238   Getting requirements to build wheel: finished with status 'done'
2023-02-08T14:06:54,263   Installing backend dependencies: started
2023-02-08T14:06:54,265   Running command pip subprocess to install backend dependencies
2023-02-08T14:06:56,953   Using pip 23.0 from /home/piwheels/.local/lib/python3.7/site-packages/pip (python 3.7)
2023-02-08T14:06:57,742   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2023-02-08T14:06:57,797   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2023-02-08T14:06:58,677   Collecting wheel
2023-02-08T14:06:58,715     Using cached https://www.piwheels.org/simple/wheel/wheel-0.38.4-py3-none-any.whl (36 kB)
2023-02-08T14:07:03,443   Installing collected packages: wheel
2023-02-08T14:07:03,734     Creating /tmp/pip-build-env-4q7c0vs_/normal/bin
2023-02-08T14:07:03,738     changing mode of /tmp/pip-build-env-4q7c0vs_/normal/bin/wheel to 755
2023-02-08T14:07:03,764   Successfully installed wheel-0.38.4
2023-02-08T14:07:04,145   Installing backend dependencies: finished with status 'done'
2023-02-08T14:07:04,150   Created temporary directory: /tmp/pip-modern-metadata-dpq7t6pi
2023-02-08T14:07:04,157   Preparing metadata (pyproject.toml): started
2023-02-08T14:07:04,159   Running command Preparing metadata (pyproject.toml)
2023-02-08T14:07:05,707   running dist_info
2023-02-08T14:07:05,750   creating /tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info
2023-02-08T14:07:05,759   writing /tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/PKG-INFO
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2023-02-08T14:07:05,769   writing entry points to /tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/entry_points.txt
2023-02-08T14:07:05,772   writing requirements to /tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/requires.txt
2023-02-08T14:07:05,774   writing top-level names to /tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/top_level.txt
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2023-02-08T14:07:05,878   reading manifest file '/tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:07:05,883   reading manifest template 'MANIFEST.in'
2023-02-08T14:07:05,896   adding license file 'LICENSE'
2023-02-08T14:07:05,914   writing manifest file '/tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:07:05,917   creating '/tmp/pip-modern-metadata-dpq7t6pi/galaxy_tool_util-22.5.0.dev2.dist-info'
2023-02-08T14:07:06,220   Preparing metadata (pyproject.toml): finished with status 'done'
2023-02-08T14:07:06,235   Source in /tmp/pip-wheel-kyltfgil/galaxy-tool-util_c8cc121024de4fe783d0579bbff29b68 has version 22.5.0.dev2, which satisfies requirement galaxy-tool-util==22.5.0.dev2 from https://files.pythonhosted.org/packages/3d/15/7f75540539ee669bff212479f141f6fed8d55d6818352e6bfa4cfc348f10/galaxy-tool-util-22.5.0.dev2.tar.gz
2023-02-08T14:07:06,237   Removed galaxy-tool-util==22.5.0.dev2 from https://files.pythonhosted.org/packages/3d/15/7f75540539ee669bff212479f141f6fed8d55d6818352e6bfa4cfc348f10/galaxy-tool-util-22.5.0.dev2.tar.gz from build tracker '/tmp/pip-build-tracker-qm10f4n3'
2023-02-08T14:07:06,252 Created temporary directory: /tmp/pip-unpack-0ceeud01
2023-02-08T14:07:06,254 Building wheels for collected packages: galaxy-tool-util
2023-02-08T14:07:06,263   Created temporary directory: /tmp/pip-wheel-pgf7dj0w
2023-02-08T14:07:06,264   Destination directory: /tmp/pip-wheel-pgf7dj0w
2023-02-08T14:07:06,269   Building wheel for galaxy-tool-util (pyproject.toml): started
2023-02-08T14:07:06,271   Running command Building wheel for galaxy-tool-util (pyproject.toml)
2023-02-08T14:07:07,777   running bdist_wheel
2023-02-08T14:07:07,851   running build
2023-02-08T14:07:07,852   running build_py
2023-02-08T14:07:07,868   creating build
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2023-02-08T14:07:07,872   copying galaxy/__init__.py -> build/lib/galaxy
2023-02-08T14:07:07,878   creating build/lib/galaxy/tool_util
2023-02-08T14:07:07,880   copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util
2023-02-08T14:07:07,883   copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util
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2023-02-08T14:07:07,912   creating build/lib/galaxy/tool_util/unittest_utils
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2023-02-08T14:07:07,950   creating build/lib/galaxy/tool_util/locations
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2023-02-08T14:07:07,976   creating build/lib/galaxy/tool_util/biotools
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2023-02-08T14:07:08,058   creating build/lib/galaxy/tool_util/toolbox
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2023-02-08T14:07:08,098   creating build/lib/galaxy/tool_util/client
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2023-02-08T14:07:08,102   copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client
2023-02-08T14:07:08,109   creating build/lib/galaxy/tool_util/cwl
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2023-02-08T14:07:08,134   copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl
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2023-02-08T14:07:08,153   creating build/lib/galaxy/tool_util/parser
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2023-02-08T14:07:08,176   copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,181   copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,185   copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,190   copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,195   copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,202   copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser
2023-02-08T14:07:08,209   creating build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,211   copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,217   copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,220   copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,224   copying galaxy/tool_util/linters/outputs.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,228   copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,231   copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,235   copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,239   copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,243   copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,247   copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,251   copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,255   copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters
2023-02-08T14:07:08,261   creating build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,264   copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,268   copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,272   copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,277   copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,281   copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,284   copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,288   copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,291   copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,297   creating build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,299   copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,304   copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,309   copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,313   copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,317   copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,320   copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,324   copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,328   copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,332   copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,336   copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,341   creating build/lib/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:08,342   copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:08,348   copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:08,351   copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:08,358   creating build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,359   copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,363   copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,366   copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,369   copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,373   copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,377   copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,381   copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,385   copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,390   copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,394   copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,398   copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,402   copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,408   creating build/lib/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:08,410   copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:08,416   creating build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,418   copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,421   copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,425   copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,428   copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,433   copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,437   copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views
2023-02-08T14:07:08,443   creating build/lib/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:08,445   copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:08,448   copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:08,452   copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:08,456   running egg_info
2023-02-08T14:07:08,495   writing galaxy_tool_util.egg-info/PKG-INFO
2023-02-08T14:07:08,498   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2023-02-08T14:07:08,503   writing entry points to galaxy_tool_util.egg-info/entry_points.txt
2023-02-08T14:07:08,506   writing requirements to galaxy_tool_util.egg-info/requires.txt
2023-02-08T14:07:08,508   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2023-02-08T14:07:08,559   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:07:08,571   reading manifest template 'MANIFEST.in'
2023-02-08T14:07:08,581   adding license file 'LICENSE'
2023-02-08T14:07:08,604   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2023-02-08T14:07:08,623   creating build/lib/galaxy/tool_util/xsd
2023-02-08T14:07:08,625   copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd
2023-02-08T14:07:08,629   copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd
2023-02-08T14:07:08,633   copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd
2023-02-08T14:07:08,638   copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd
2023-02-08T14:07:08,658   copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify
2023-02-08T14:07:08,662   copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2023-02-08T14:07:08,667   copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2023-02-08T14:07:08,670   copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2023-02-08T14:07:08,674   copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:08,678   copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled
2023-02-08T14:07:08,683   copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:08,749   installing to build/bdist.linux-armv7l/wheel
2023-02-08T14:07:08,750   running install
2023-02-08T14:07:08,813   running install_lib
2023-02-08T14:07:08,828   creating build/bdist.linux-armv7l
2023-02-08T14:07:08,829   creating build/bdist.linux-armv7l/wheel
2023-02-08T14:07:08,832   creating build/bdist.linux-armv7l/wheel/galaxy
2023-02-08T14:07:08,834   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy
2023-02-08T14:07:08,840   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:08,843   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils
2023-02-08T14:07:08,846   copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils
2023-02-08T14:07:08,850   copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils
2023-02-08T14:07:08,854   copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:08,858   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,860   copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,867   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,869   copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,874   copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,878   copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,882   copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,887   copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,890   copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,895   copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,899   copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2023-02-08T14:07:08,903   copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,907   copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,915   copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,921   copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,925   copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2023-02-08T14:07:08,928   copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:08,934   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2023-02-08T14:07:08,936   copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2023-02-08T14:07:08,940   copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2023-02-08T14:07:08,944   copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2023-02-08T14:07:08,947   copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2023-02-08T14:07:08,952   copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:08,956   copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:08,961   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,963   copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,967   copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,971   copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,975   copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,978   copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2023-02-08T14:07:08,983   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2023-02-08T14:07:08,985   copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2023-02-08T14:07:08,989   copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2023-02-08T14:07:08,993   copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2023-02-08T14:07:08,999   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,001   copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,005   copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,010   copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,015   copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,022   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,023   copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,029   copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,034   copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,038   copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,043   copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,049   copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,053   copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,058   copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,063   copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,068   copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,072   copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2023-02-08T14:07:09,076   copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,079   copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,084   copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,089   copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,093   copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,097   copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,103   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:09,105   copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:09,111   copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:09,115   copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2023-02-08T14:07:09,119   copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,123   copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,128   copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,134   copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,139   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,141   copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,145   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,149   copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,151   copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,155   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,158   copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,163   copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,167   copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,171   copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,176   copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,181   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,184   copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,189   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2023-02-08T14:07:09,194   copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,198   copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2023-02-08T14:07:09,203   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,205   copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,210   copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,214   copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,217   copying build/lib/galaxy/tool_util/toolbox/tags.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,222   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:09,223   copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:09,228   copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters
2023-02-08T14:07:09,232   copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,240   copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,244   copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2023-02-08T14:07:09,249   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,251   copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,254   copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,257   copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,261   copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,265   copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,269   copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2023-02-08T14:07:09,274   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:09,276   copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:09,280   copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:09,284   copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2023-02-08T14:07:09,287   copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:09,292   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client
2023-02-08T14:07:09,293   copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client
2023-02-08T14:07:09,296   copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/client
2023-02-08T14:07:09,302   copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:09,307   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,309   copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,316   copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,319   copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,324   copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,328   copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,333   copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,336   copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,340   copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2023-02-08T14:07:09,345   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2023-02-08T14:07:09,346   copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2023-02-08T14:07:09,350   copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2023-02-08T14:07:09,353   copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2023-02-08T14:07:09,357   copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2023-02-08T14:07:09,378   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,379   copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,385   copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,389   copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,393   copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,396   copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,400   copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,405   copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,408   copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,413   copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,417   copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,424   copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2023-02-08T14:07:09,429   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,431   copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,436   copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,440   copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,443   copying build/lib/galaxy/tool_util/linters/outputs.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,447   copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,450   copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,454   copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,458   copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,461   copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,465   copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,469   copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,473   copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2023-02-08T14:07:09,477   copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:09,481   copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/galaxy/tool_util
2023-02-08T14:07:09,485   running install_egg_info
2023-02-08T14:07:09,508   Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.5.0.dev2-py3.7.egg-info
2023-02-08T14:07:09,531   running install_scripts
2023-02-08T14:07:09,700   creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-22.5.0.dev2.dist-info/WHEEL
2023-02-08T14:07:09,705   creating '/tmp/pip-wheel-pgf7dj0w/.tmp-anoy5a8k/galaxy_tool_util-22.5.0.dev2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2023-02-08T14:07:09,710   adding 'galaxy/__init__.py'
2023-02-08T14:07:09,714   adding 'galaxy/tool_util/__init__.py'
2023-02-08T14:07:09,717   adding 'galaxy/tool_util/edam_util.py'
2023-02-08T14:07:09,720   adding 'galaxy/tool_util/fetcher.py'
2023-02-08T14:07:09,725   adding 'galaxy/tool_util/lint.py'
2023-02-08T14:07:09,727   adding 'galaxy/tool_util/loader.py'
2023-02-08T14:07:09,731   adding 'galaxy/tool_util/loader_directory.py'
2023-02-08T14:07:09,736   adding 'galaxy/tool_util/output_checker.py'
2023-02-08T14:07:09,740   adding 'galaxy/tool_util/provided_metadata.py'
2023-02-08T14:07:09,744   adding 'galaxy/tool_util/biotools/__init__.py'
2023-02-08T14:07:09,746   adding 'galaxy/tool_util/biotools/interface.py'
2023-02-08T14:07:09,749   adding 'galaxy/tool_util/biotools/source.py'
2023-02-08T14:07:09,753   adding 'galaxy/tool_util/client/__init__.py'
2023-02-08T14:07:09,757   adding 'galaxy/tool_util/client/staging.py'
2023-02-08T14:07:09,761   adding 'galaxy/tool_util/cwl/__init__.py'
2023-02-08T14:07:09,764   adding 'galaxy/tool_util/cwl/cwltool_deps.py'
2023-02-08T14:07:09,779   adding 'galaxy/tool_util/cwl/parser.py'
2023-02-08T14:07:09,786   adding 'galaxy/tool_util/cwl/representation.py'
2023-02-08T14:07:09,789   adding 'galaxy/tool_util/cwl/runnable.py'
2023-02-08T14:07:09,793   adding 'galaxy/tool_util/cwl/runtime_actions.py'
2023-02-08T14:07:09,796   adding 'galaxy/tool_util/cwl/schema.py'
2023-02-08T14:07:09,803   adding 'galaxy/tool_util/cwl/util.py'
2023-02-08T14:07:09,810   adding 'galaxy/tool_util/deps/__init__.py'
2023-02-08T14:07:09,817   adding 'galaxy/tool_util/deps/brew_exts.py'
2023-02-08T14:07:09,820   adding 'galaxy/tool_util/deps/brew_util.py'
2023-02-08T14:07:09,823   adding 'galaxy/tool_util/deps/commands.py'
2023-02-08T14:07:09,826   adding 'galaxy/tool_util/deps/conda_compat.py'
2023-02-08T14:07:09,832   adding 'galaxy/tool_util/deps/conda_util.py'
2023-02-08T14:07:09,838   adding 'galaxy/tool_util/deps/container_classes.py'
2023-02-08T14:07:09,841   adding 'galaxy/tool_util/deps/container_volumes.py'
2023-02-08T14:07:09,846   adding 'galaxy/tool_util/deps/containers.py'
2023-02-08T14:07:09,850   adding 'galaxy/tool_util/deps/dependencies.py'
2023-02-08T14:07:09,854   adding 'galaxy/tool_util/deps/docker_util.py'
2023-02-08T14:07:09,856   adding 'galaxy/tool_util/deps/dockerfiles.py'
2023-02-08T14:07:09,859   adding 'galaxy/tool_util/deps/installable.py'
2023-02-08T14:07:09,864   adding 'galaxy/tool_util/deps/requirements.py'
2023-02-08T14:07:09,867   adding 'galaxy/tool_util/deps/singularity_util.py'
2023-02-08T14:07:09,872   adding 'galaxy/tool_util/deps/views.py'
2023-02-08T14:07:09,876   adding 'galaxy/tool_util/deps/container_resolvers/__init__.py'
2023-02-08T14:07:09,880   adding 'galaxy/tool_util/deps/container_resolvers/explicit.py'
2023-02-08T14:07:09,887   adding 'galaxy/tool_util/deps/container_resolvers/mulled.py'
2023-02-08T14:07:09,891   adding 'galaxy/tool_util/deps/mulled/__init__.py'
2023-02-08T14:07:09,894   adding 'galaxy/tool_util/deps/mulled/_cli.py'
2023-02-08T14:07:09,898   adding 'galaxy/tool_util/deps/mulled/get_tests.py'
2023-02-08T14:07:09,901   adding 'galaxy/tool_util/deps/mulled/invfile.lua'
2023-02-08T14:07:09,907   adding 'galaxy/tool_util/deps/mulled/mulled_build.py'
2023-02-08T14:07:09,911   adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py'
2023-02-08T14:07:09,914   adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py'
2023-02-08T14:07:09,917   adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py'
2023-02-08T14:07:09,919   adding 'galaxy/tool_util/deps/mulled/mulled_hash.py'
2023-02-08T14:07:09,922   adding 'galaxy/tool_util/deps/mulled/mulled_list.py'
2023-02-08T14:07:09,928   adding 'galaxy/tool_util/deps/mulled/mulled_search.py'
2023-02-08T14:07:09,932   adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py'
2023-02-08T14:07:09,938   adding 'galaxy/tool_util/deps/mulled/util.py'
2023-02-08T14:07:09,944   adding 'galaxy/tool_util/deps/resolvers/__init__.py'
2023-02-08T14:07:09,947   adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py'
2023-02-08T14:07:09,953   adding 'galaxy/tool_util/deps/resolvers/conda.py'
2023-02-08T14:07:09,956   adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml'
2023-02-08T14:07:09,959   adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py'
2023-02-08T14:07:09,962   adding 'galaxy/tool_util/deps/resolvers/homebrew.py'
2023-02-08T14:07:09,966   adding 'galaxy/tool_util/deps/resolvers/lmod.py'
2023-02-08T14:07:09,970   adding 'galaxy/tool_util/deps/resolvers/modules.py'
2023-02-08T14:07:09,973   adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py'
2023-02-08T14:07:09,976   adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py'
2023-02-08T14:07:09,979   adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py'
2023-02-08T14:07:09,983   adding 'galaxy/tool_util/linters/__init__.py'
2023-02-08T14:07:09,985   adding 'galaxy/tool_util/linters/_util.py'
2023-02-08T14:07:09,988   adding 'galaxy/tool_util/linters/citations.py'
2023-02-08T14:07:09,991   adding 'galaxy/tool_util/linters/command.py'
2023-02-08T14:07:09,993   adding 'galaxy/tool_util/linters/cwl.py'
2023-02-08T14:07:09,996   adding 'galaxy/tool_util/linters/general.py'
2023-02-08T14:07:09,999   adding 'galaxy/tool_util/linters/help.py'
2023-02-08T14:07:10,005   adding 'galaxy/tool_util/linters/inputs.py'
2023-02-08T14:07:10,009   adding 'galaxy/tool_util/linters/outputs.py'
2023-02-08T14:07:10,012   adding 'galaxy/tool_util/linters/stdio.py'
2023-02-08T14:07:10,016   adding 'galaxy/tool_util/linters/tests.py'
2023-02-08T14:07:10,019   adding 'galaxy/tool_util/linters/xml_order.py'
2023-02-08T14:07:10,022   adding 'galaxy/tool_util/locations/__init__.py'
2023-02-08T14:07:10,025   adding 'galaxy/tool_util/locations/dockstore.py'
2023-02-08T14:07:10,028   adding 'galaxy/tool_util/locations/file.py'
2023-02-08T14:07:10,030   adding 'galaxy/tool_util/locations/http.py'
2023-02-08T14:07:10,033   adding 'galaxy/tool_util/ontologies/__init__.py'
2023-02-08T14:07:10,036   adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv'
2023-02-08T14:07:10,038   adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv'
2023-02-08T14:07:10,040   adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv'
2023-02-08T14:07:10,043   adding 'galaxy/tool_util/ontologies/ontology_data.py'
2023-02-08T14:07:10,047   adding 'galaxy/tool_util/parser/__init__.py'
2023-02-08T14:07:10,050   adding 'galaxy/tool_util/parser/cwl.py'
2023-02-08T14:07:10,054   adding 'galaxy/tool_util/parser/factory.py'
2023-02-08T14:07:10,059   adding 'galaxy/tool_util/parser/interface.py'
2023-02-08T14:07:10,065   adding 'galaxy/tool_util/parser/output_actions.py'
2023-02-08T14:07:10,069   adding 'galaxy/tool_util/parser/output_collection_def.py'
2023-02-08T14:07:10,074   adding 'galaxy/tool_util/parser/output_objects.py'
2023-02-08T14:07:10,077   adding 'galaxy/tool_util/parser/stdio.py'
2023-02-08T14:07:10,080   adding 'galaxy/tool_util/parser/util.py'
2023-02-08T14:07:10,096   adding 'galaxy/tool_util/parser/xml.py'
2023-02-08T14:07:10,101   adding 'galaxy/tool_util/parser/yaml.py'
2023-02-08T14:07:10,105   adding 'galaxy/tool_util/toolbox/__init__.py'
2023-02-08T14:07:10,124   adding 'galaxy/tool_util/toolbox/base.py'
2023-02-08T14:07:10,129   adding 'galaxy/tool_util/toolbox/integrated_panel.py'
2023-02-08T14:07:10,133   adding 'galaxy/tool_util/toolbox/panel.py'
2023-02-08T14:07:10,136   adding 'galaxy/tool_util/toolbox/parser.py'
2023-02-08T14:07:10,139   adding 'galaxy/tool_util/toolbox/tags.py'
2023-02-08T14:07:10,142   adding 'galaxy/tool_util/toolbox/watcher.py'
2023-02-08T14:07:10,147   adding 'galaxy/tool_util/toolbox/filters/__init__.py'
2023-02-08T14:07:10,150   adding 'galaxy/tool_util/toolbox/filters/examples.py.sample'
2023-02-08T14:07:10,153   adding 'galaxy/tool_util/toolbox/lineages/__init__.py'
2023-02-08T14:07:10,156   adding 'galaxy/tool_util/toolbox/lineages/factory.py'
2023-02-08T14:07:10,159   adding 'galaxy/tool_util/toolbox/lineages/interface.py'
2023-02-08T14:07:10,162   adding 'galaxy/tool_util/toolbox/views/__init__.py'
2023-02-08T14:07:10,165   adding 'galaxy/tool_util/toolbox/views/definitions.py'
2023-02-08T14:07:10,169   adding 'galaxy/tool_util/toolbox/views/edam.py'
2023-02-08T14:07:10,172   adding 'galaxy/tool_util/toolbox/views/interface.py'
2023-02-08T14:07:10,175   adding 'galaxy/tool_util/toolbox/views/sources.py'
2023-02-08T14:07:10,178   adding 'galaxy/tool_util/toolbox/views/static.py'
2023-02-08T14:07:10,182   adding 'galaxy/tool_util/unittest_utils/__init__.py'
2023-02-08T14:07:10,185   adding 'galaxy/tool_util/unittest_utils/sample_data.py'
2023-02-08T14:07:10,191   adding 'galaxy/tool_util/verify/__init__.py'
2023-02-08T14:07:10,211   adding 'galaxy/tool_util/verify/interactor.py'
2023-02-08T14:07:10,219   adding 'galaxy/tool_util/verify/script.py'
2023-02-08T14:07:10,222   adding 'galaxy/tool_util/verify/test_config.sample.yml'
2023-02-08T14:07:10,225   adding 'galaxy/tool_util/verify/test_data.py'
2023-02-08T14:07:10,228   adding 'galaxy/tool_util/verify/wait.py'
2023-02-08T14:07:10,232   adding 'galaxy/tool_util/verify/asserts/__init__.py'
2023-02-08T14:07:10,235   adding 'galaxy/tool_util/verify/asserts/_util.py'
2023-02-08T14:07:10,238   adding 'galaxy/tool_util/verify/asserts/archive.py'
2023-02-08T14:07:10,241   adding 'galaxy/tool_util/verify/asserts/hdf5.py'
2023-02-08T14:07:10,243   adding 'galaxy/tool_util/verify/asserts/size.py'
2023-02-08T14:07:10,246   adding 'galaxy/tool_util/verify/asserts/tabular.py'
2023-02-08T14:07:10,249   adding 'galaxy/tool_util/verify/asserts/text.py'
2023-02-08T14:07:10,252   adding 'galaxy/tool_util/verify/asserts/xml.py'
2023-02-08T14:07:10,256   adding 'galaxy/tool_util/xsd/LICENSE'
2023-02-08T14:07:10,258   adding 'galaxy/tool_util/xsd/README.md'
2023-02-08T14:07:10,261   adding 'galaxy/tool_util/xsd/galaxy.jxb'
2023-02-08T14:07:10,346   adding 'galaxy/tool_util/xsd/galaxy.xsd'
2023-02-08T14:07:10,360   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/LICENSE'
2023-02-08T14:07:10,363   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/METADATA'
2023-02-08T14:07:10,365   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/WHEEL'
2023-02-08T14:07:10,367   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/entry_points.txt'
2023-02-08T14:07:10,369   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/top_level.txt'
2023-02-08T14:07:10,375   adding 'galaxy_tool_util-22.5.0.dev2.dist-info/RECORD'
2023-02-08T14:07:10,395   removing build/bdist.linux-armv7l/wheel
2023-02-08T14:07:10,472   /tmp/pip-build-env-4q7c0vs_/overlay/lib/python3.7/site-packages/setuptools/command/build_py.py:202: SetuptoolsDeprecationWarning:     Installing 'galaxy.tool_util.xsd' as data is deprecated, please list it in `packages`.
2023-02-08T14:07:10,472       !!


2023-02-08T14:07:10,474       ############################
2023-02-08T14:07:10,474       # Package would be ignored #
2023-02-08T14:07:10,474       ############################
2023-02-08T14:07:10,475       Python recognizes 'galaxy.tool_util.xsd' as an importable package,
2023-02-08T14:07:10,475       but it is not listed in the `packages` configuration of setuptools.

2023-02-08T14:07:10,476       'galaxy.tool_util.xsd' has been automatically added to the distribution only
2023-02-08T14:07:10,477       because it may contain data files, but this behavior is likely to change
2023-02-08T14:07:10,477       in future versions of setuptools (and therefore is considered deprecated).

2023-02-08T14:07:10,478       Please make sure that 'galaxy.tool_util.xsd' is included as a package by using
2023-02-08T14:07:10,479       the `packages` configuration field or the proper discovery methods
2023-02-08T14:07:10,479       (for example by using `find_namespace_packages(...)`/`find_namespace:`
2023-02-08T14:07:10,480       instead of `find_packages(...)`/`find:`).

2023-02-08T14:07:10,480       You can read more about "package discovery" and "data files" on setuptools
2023-02-08T14:07:10,481       documentation page.


2023-02-08T14:07:10,482   !!

2023-02-08T14:07:10,483     check.warn(importable)
2023-02-08T14:07:10,635   Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done'
2023-02-08T14:07:10,669   Created wheel for galaxy-tool-util: filename=galaxy_tool_util-22.5.0.dev2-py3-none-any.whl size=354153 sha256=bfcb8dbe5c89c8ce9270720e64ebf7b71fa7fa08b7e221c2d89481d553d28395
2023-02-08T14:07:10,671   Stored in directory: /tmp/pip-ephem-wheel-cache-mlfg80gt/wheels/a8/d2/72/97307926fde304f966730fd78d239a3088b7e6a34268e9f5ea
2023-02-08T14:07:10,711 Successfully built galaxy-tool-util
2023-02-08T14:07:10,749 Removed build tracker: '/tmp/pip-build-tracker-qm10f4n3'